phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6j6n_0691/05_2022/6j6n_0691_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6j6n_0691/05_2022/6j6n_0691.map refinement.macro_cycles=10 scattering_table=electron resolution=3.86 write_initial_geo_file=False >& 6j6n.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6j6n_0691/05_2022/6j6n_0691.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6j6n_0691/05_2022/6j6n_0691.map 3.86
Refinement ran but no refined model file.