Starting phenix.real_space_refine on Wed Jan 17 22:34:52 2024 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jh6_9825/01_2024/6jh6_9825_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jh6_9825/01_2024/6jh6_9825.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=4.8 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jh6_9825/01_2024/6jh6_9825.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jh6_9825/01_2024/6jh6_9825.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jh6_9825/01_2024/6jh6_9825_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jh6_9825/01_2024/6jh6_9825_updated.pdb" } resolution = 4.8 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= 0.000 sd= 0.004 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 6 Type Number sf(0) Gaussians Zn 4 6.06 5 P 12 5.49 5 S 636 5.16 5 C 69296 2.51 5 N 18644 2.21 5 O 20332 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "A ARG 13": "NH1" <-> "NH2" Residue "A PHE 36": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 190": "NH1" <-> "NH2" Residue "B ARG 257": "NH1" <-> "NH2" Residue "B TYR 374": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B TYR 2039": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 2323": "NH1" <-> "NH2" Residue "B ARG 2519": "NH1" <-> "NH2" Residue "B ARG 3616": "NH1" <-> "NH2" Residue "B ARG 4148": "NH1" <-> "NH2" Residue "B ARG 4158": "NH1" <-> "NH2" Residue "B ARG 4498": "NH1" <-> "NH2" Residue "B ARG 4504": "NH1" <-> "NH2" Residue "B TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 4791": "NH1" <-> "NH2" Residue "C ARG 13": "NH1" <-> "NH2" Residue "C PHE 36": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 190": "NH1" <-> "NH2" Residue "D ARG 257": "NH1" <-> "NH2" Residue "D TYR 374": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 2039": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 2323": "NH1" <-> "NH2" Residue "D ARG 2519": "NH1" <-> "NH2" Residue "D ARG 3616": "NH1" <-> "NH2" Residue "D ARG 4148": "NH1" <-> "NH2" Residue "D ARG 4158": "NH1" <-> "NH2" Residue "D ARG 4498": "NH1" <-> "NH2" Residue "D ARG 4504": "NH1" <-> "NH2" Residue "D TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 4791": "NH1" <-> "NH2" Residue "E ARG 13": "NH1" <-> "NH2" Residue "E PHE 36": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F ARG 190": "NH1" <-> "NH2" Residue "F ARG 257": "NH1" <-> "NH2" Residue "F TYR 374": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F TYR 2039": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F ARG 2323": "NH1" <-> "NH2" Residue "F ARG 2519": "NH1" <-> "NH2" Residue "F ARG 3616": "NH1" <-> "NH2" Residue "F ARG 4148": "NH1" <-> "NH2" Residue "F ARG 4158": "NH1" <-> "NH2" Residue "F ARG 4498": "NH1" <-> "NH2" Residue "F ARG 4504": "NH1" <-> "NH2" Residue "F TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F ARG 4791": "NH1" <-> "NH2" Residue "G ARG 13": "NH1" <-> "NH2" Residue "G PHE 36": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 190": "NH1" <-> "NH2" Residue "H ARG 257": "NH1" <-> "NH2" Residue "H TYR 374": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H TYR 2039": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 2323": "NH1" <-> "NH2" Residue "H ARG 2519": "NH1" <-> "NH2" Residue "H ARG 3616": "NH1" <-> "NH2" Residue "H ARG 4148": "NH1" <-> "NH2" Residue "H ARG 4158": "NH1" <-> "NH2" Residue "H ARG 4498": "NH1" <-> "NH2" Residue "H ARG 4504": "NH1" <-> "NH2" Residue "H TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 4791": "NH1" <-> "NH2" Time to flip residues: 0.24s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/chem_data/mon_lib" Total number of atoms: 108924 Number of models: 1 Model: "" Number of chains: 12 Chain: "A" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "B" Number of atoms: 26380 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3454, 26380 Classifications: {'peptide': 3454} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 338} Link IDs: {'CIS': 13, 'PTRANS': 117, 'TRANS': 3323} Chain breaks: 60 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1424 Unresolved non-hydrogen angles: 1815 Unresolved non-hydrogen dihedrals: 1193 Unresolved non-hydrogen chiralities: 119 Planarities with less than four sites: {'GLN:plan1': 17, 'HIS:plan': 19, 'TYR:plan': 15, 'ASN:plan1': 15, 'TRP:plan': 3, 'ASP:plan': 22, 'PHE:plan': 21, 'GLU:plan': 32, 'ARG:plan': 33} Unresolved non-hydrogen planarities: 804 Chain: "C" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "D" Number of atoms: 26380 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3454, 26380 Classifications: {'peptide': 3454} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 338} Link IDs: {'CIS': 13, 'PTRANS': 117, 'TRANS': 3323} Chain breaks: 60 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1424 Unresolved non-hydrogen angles: 1815 Unresolved non-hydrogen dihedrals: 1192 Unresolved non-hydrogen chiralities: 119 Planarities with less than four sites: {'GLN:plan1': 17, 'HIS:plan': 19, 'TYR:plan': 15, 'ASN:plan1': 15, 'TRP:plan': 3, 'ASP:plan': 22, 'PHE:plan': 21, 'GLU:plan': 32, 'ARG:plan': 33} Unresolved non-hydrogen planarities: 804 Chain: "E" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "F" Number of atoms: 26380 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3454, 26380 Classifications: {'peptide': 3454} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 338} Link IDs: {'CIS': 13, 'PTRANS': 117, 'TRANS': 3323} Chain breaks: 60 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1424 Unresolved non-hydrogen angles: 1815 Unresolved non-hydrogen dihedrals: 1193 Unresolved non-hydrogen chiralities: 119 Planarities with less than four sites: {'GLN:plan1': 17, 'HIS:plan': 19, 'TYR:plan': 15, 'ASN:plan1': 15, 'TRP:plan': 3, 'ASP:plan': 22, 'PHE:plan': 21, 'GLU:plan': 32, 'ARG:plan': 33} Unresolved non-hydrogen planarities: 804 Chain: "G" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "H" Number of atoms: 26380 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3454, 26380 Classifications: {'peptide': 3454} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 338} Link IDs: {'CIS': 13, 'PTRANS': 117, 'TRANS': 3323} Chain breaks: 60 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1424 Unresolved non-hydrogen angles: 1815 Unresolved non-hydrogen dihedrals: 1192 Unresolved non-hydrogen chiralities: 119 Planarities with less than four sites: {'GLN:plan1': 17, 'HIS:plan': 19, 'TYR:plan': 15, 'ASN:plan1': 15, 'TRP:plan': 3, 'ASP:plan': 22, 'PHE:plan': 21, 'GLU:plan': 32, 'ARG:plan': 33} Unresolved non-hydrogen planarities: 804 Chain: "B" Number of atoms: 32 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 32 Unusual residues: {' ZN': 1, 'ATP': 1} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "D" Number of atoms: 32 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 32 Unusual residues: {' ZN': 1, 'ATP': 1} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "F" Number of atoms: 32 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 32 Unusual residues: {' ZN': 1, 'ATP': 1} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "H" Number of atoms: 32 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 32 Unusual residues: {' ZN': 1, 'ATP': 1} Classifications: {'undetermined': 2} Link IDs: {None: 1} Residues with excluded nonbonded symmetry interactions: 4 residue: pdb=" N HIS A 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS A 87 " occ=0.99 residue: pdb=" N HIS C 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS C 87 " occ=0.99 residue: pdb=" N HIS E 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS E 87 " occ=0.99 residue: pdb=" N HIS G 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS G 87 " occ=0.99 Time building chain proxies: 39.93, per 1000 atoms: 0.37 Number of scatterers: 108924 At special positions: 0 Unit cell: (374.977, 374.977, 209.046, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 6 Type Number sf(0) Zn 4 29.99 S 636 16.00 P 12 15.00 O 20332 8.00 N 18644 7.00 C 69296 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=0, symmetry=0 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=0, symmetry=0 Time building additional restraints: 31.12 Conformation dependent library (CDL) restraints added in 14.2 seconds 27496 Ramachandran restraints generated. 13748 Oldfield, 0 Emsley, 13748 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 26696 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 544 helices and 88 sheets defined 58.5% alpha, 9.9% beta 0 base pairs and 0 stacking pairs defined. Time for finding SS restraints: 30.23 Creating SS restraints... Processing helix chain 'A' and resid 38 through 43 Processing helix chain 'A' and resid 56 through 67 removed outlier: 4.642A pdb=" N GLY A 62 " --> pdb=" O GLY A 58 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N ALA A 63 " --> pdb=" O PHE A 59 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N ALA A 64 " --> pdb=" O GLU A 60 " (cutoff:3.500A) removed outlier: 4.581A pdb=" N SER A 67 " --> pdb=" O ALA A 63 " (cutoff:3.500A) Processing helix chain 'A' and resid 77 through 82 removed outlier: 3.748A pdb=" N TYR A 82 " --> pdb=" O PRO A 78 " (cutoff:3.500A) Processing helix chain 'C' and resid 38 through 43 Processing helix chain 'C' and resid 56 through 67 removed outlier: 4.642A pdb=" N GLY C 62 " --> pdb=" O GLY C 58 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N ALA C 63 " --> pdb=" O PHE C 59 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N ALA C 64 " --> pdb=" O GLU C 60 " (cutoff:3.500A) removed outlier: 4.581A pdb=" N SER C 67 " --> pdb=" O ALA C 63 " (cutoff:3.500A) Processing helix chain 'C' and resid 77 through 82 removed outlier: 3.749A pdb=" N TYR C 82 " --> pdb=" O PRO C 78 " (cutoff:3.500A) Processing helix chain 'E' and resid 38 through 43 Processing helix chain 'E' and resid 56 through 67 removed outlier: 4.643A pdb=" N GLY E 62 " --> pdb=" O GLY E 58 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N ALA E 63 " --> pdb=" O PHE E 59 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N ALA E 64 " --> pdb=" O GLU E 60 " (cutoff:3.500A) removed outlier: 4.580A pdb=" N SER E 67 " --> pdb=" O ALA E 63 " (cutoff:3.500A) Processing helix chain 'E' and resid 77 through 82 removed outlier: 3.749A pdb=" N TYR E 82 " --> pdb=" O PRO E 78 " (cutoff:3.500A) Processing helix chain 'G' and resid 38 through 43 Processing helix chain 'G' and resid 56 through 67 removed outlier: 4.642A pdb=" N GLY G 62 " --> pdb=" O GLY G 58 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N ALA G 63 " --> pdb=" O PHE G 59 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N ALA G 64 " --> pdb=" O GLU G 60 " (cutoff:3.500A) removed outlier: 4.581A pdb=" N SER G 67 " --> pdb=" O ALA G 63 " (cutoff:3.500A) Processing helix chain 'G' and resid 77 through 82 removed outlier: 3.748A pdb=" N TYR G 82 " --> pdb=" O PRO G 78 " (cutoff:3.500A) Processing helix chain 'B' and resid 61 through 66 removed outlier: 5.191A pdb=" N CYS B 65 " --> pdb=" O ASP B 61 " (cutoff:3.500A) Processing helix chain 'B' and resid 74 through 85 removed outlier: 5.042A pdb=" N THR B 85 " --> pdb=" O MET B 81 " (cutoff:3.500A) Processing helix chain 'B' and resid 266 through 271 removed outlier: 3.676A pdb=" N HIS B 270 " --> pdb=" O ALA B 266 " (cutoff:3.500A) removed outlier: 4.692A pdb=" N ALA B 271 " --> pdb=" O VAL B 267 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 266 through 271' Processing helix chain 'B' and resid 409 through 439 removed outlier: 3.586A pdb=" N VAL B 418 " --> pdb=" O ARG B 414 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N ARG B 420 " --> pdb=" O ALA B 416 " (cutoff:3.500A) removed outlier: 3.536A pdb=" N LEU B 436 " --> pdb=" O GLY B 432 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N LYS B 438 " --> pdb=" O ASP B 434 " (cutoff:3.500A) Processing helix chain 'B' and resid 449 through 464 removed outlier: 3.724A pdb=" N SER B 453 " --> pdb=" O ILE B 449 " (cutoff:3.500A) Processing helix chain 'B' and resid 471 through 493 removed outlier: 3.781A pdb=" N PHE B 489 " --> pdb=" O ARG B 485 " (cutoff:3.500A) Processing helix chain 'B' and resid 494 through 507 removed outlier: 5.214A pdb=" N VAL B 507 " --> pdb=" O ASP B 503 " (cutoff:3.500A) Processing helix chain 'B' and resid 519 through 542 removed outlier: 4.015A pdb=" N GLY B 523 " --> pdb=" O GLY B 519 " (cutoff:3.500A) removed outlier: 4.969A pdb=" N SER B 525 " --> pdb=" O GLU B 521 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N TRP B 526 " --> pdb=" O ALA B 522 " (cutoff:3.500A) removed outlier: 5.256A pdb=" N LYS B 527 " --> pdb=" O GLY B 523 " (cutoff:3.500A) removed outlier: 5.569A pdb=" N SER B 528 " --> pdb=" O GLU B 524 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N ILE B 541 " --> pdb=" O LEU B 537 " (cutoff:3.500A) removed outlier: 4.373A pdb=" N ARG B 542 " --> pdb=" O ALA B 538 " (cutoff:3.500A) Processing helix chain 'B' and resid 544 through 552 removed outlier: 4.441A pdb=" N CYS B 548 " --> pdb=" O ASN B 544 " (cutoff:3.500A) removed outlier: 4.423A pdb=" N SER B 552 " --> pdb=" O CYS B 548 " (cutoff:3.500A) Processing helix chain 'B' and resid 553 through 563 removed outlier: 4.487A pdb=" N TRP B 557 " --> pdb=" O GLY B 553 " (cutoff:3.500A) removed outlier: 4.089A pdb=" N GLU B 563 " --> pdb=" O ILE B 559 " (cutoff:3.500A) Processing helix chain 'B' and resid 567 through 582 removed outlier: 3.644A pdb=" N ILE B 571 " --> pdb=" O ALA B 567 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N GLU B 581 " --> pdb=" O CYS B 577 " (cutoff:3.500A) Processing helix chain 'B' and resid 583 through 589 removed outlier: 3.754A pdb=" N ASN B 587 " --> pdb=" O PRO B 583 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N ILE B 588 " --> pdb=" O GLU B 584 " (cutoff:3.500A) Processing helix chain 'B' and resid 590 through 605 removed outlier: 3.817A pdb=" N ILE B 594 " --> pdb=" O LYS B 590 " (cutoff:3.500A) Processing helix chain 'B' and resid 607 through 620 removed outlier: 3.695A pdb=" N LEU B 611 " --> pdb=" O ASN B 607 " (cutoff:3.500A) removed outlier: 4.915A pdb=" N CYS B 620 " --> pdb=" O SER B 616 " (cutoff:3.500A) Processing helix chain 'B' and resid 625 through 636 Processing helix chain 'B' and resid 821 through 827 removed outlier: 4.356A pdb=" N ALA B 825 " --> pdb=" O PRO B 821 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N VAL B 826 " --> pdb=" O CYS B 822 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N LEU B 827 " --> pdb=" O TYR B 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 821 through 827' Processing helix chain 'B' and resid 876 through 901 removed outlier: 3.816A pdb=" N ARG B 880 " --> pdb=" O PRO B 876 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N ILE B 881 " --> pdb=" O HIS B 877 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N GLU B 891 " --> pdb=" O GLU B 887 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N LEU B 892 " --> pdb=" O ASN B 888 " (cutoff:3.500A) Processing helix chain 'B' and resid 920 through 925 Proline residue: B 925 - end of helix Processing helix chain 'B' and resid 929 through 946 removed outlier: 4.268A pdb=" N MET B 935 " --> pdb=" O TYR B 931 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N LEU B 940 " --> pdb=" O SER B 936 " (cutoff:3.500A) Processing helix chain 'B' and resid 989 through 1014 removed outlier: 3.709A pdb=" N ASP B 997 " --> pdb=" O GLU B 993 " (cutoff:3.500A) removed outlier: 5.260A pdb=" N ARG B1013 " --> pdb=" O ARG B1009 " (cutoff:3.500A) removed outlier: 4.687A pdb=" N GLN B1014 " --> pdb=" O ASP B1010 " (cutoff:3.500A) Processing helix chain 'B' and resid 1042 through 1059 removed outlier: 4.881A pdb=" N ASN B1046 " --> pdb=" O THR B1042 " (cutoff:3.500A) Processing helix chain 'B' and resid 1220 through 1225 removed outlier: 5.887A pdb=" N LYS B1225 " --> pdb=" O VAL B1221 " (cutoff:3.500A) Processing helix chain 'B' and resid 1229 through 1235 removed outlier: 4.985A pdb=" N GLN B1233 " --> pdb=" O ILE B1229 " (cutoff:3.500A) removed outlier: 6.422A pdb=" N GLU B1234 " --> pdb=" O CYS B1230 " (cutoff:3.500A) Processing helix chain 'B' and resid 1238 through 1244 removed outlier: 4.716A pdb=" N ASN B1242 " --> pdb=" O PRO B1238 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N THR B1243 " --> pdb=" O PHE B1239 " (cutoff:3.500A) removed outlier: 4.726A pdb=" N ASN B1244 " --> pdb=" O ALA B1240 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 1238 through 1244' Processing helix chain 'B' and resid 1570 through 1576 removed outlier: 4.183A pdb=" N GLU B1574 " --> pdb=" O LEU B1570 " (cutoff:3.500A) removed outlier: 3.612A pdb=" N LYS B1576 " --> pdb=" O LYS B1572 " (cutoff:3.500A) Processing helix chain 'B' and resid 1640 through 1648 removed outlier: 3.948A pdb=" N LEU B1644 " --> pdb=" O ASP B1640 " (cutoff:3.500A) removed outlier: 4.388A pdb=" N THR B1645 " --> pdb=" O ILE B1641 " (cutoff:3.500A) removed outlier: 6.099A pdb=" N GLU B1646 " --> pdb=" O LEU B1642 " (cutoff:3.500A) removed outlier: 4.594A pdb=" N GLN B1647 " --> pdb=" O GLU B1643 " (cutoff:3.500A) removed outlier: 4.615A pdb=" N GLU B1648 " --> pdb=" O LEU B1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 1640 through 1648' Processing helix chain 'B' and resid 1649 through 1666 removed outlier: 4.291A pdb=" N ALA B1666 " --> pdb=" O SER B1662 " (cutoff:3.500A) Processing helix chain 'B' and resid 1669 through 1680 Processing helix chain 'B' and resid 1681 through 1692 removed outlier: 3.661A pdb=" N LEU B1685 " --> pdb=" O ASP B1681 " (cutoff:3.500A) removed outlier: 4.098A pdb=" N GLU B1690 " --> pdb=" O LEU B1686 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N ASN B1691 " --> pdb=" O TYR B1687 " (cutoff:3.500A) removed outlier: 5.800A pdb=" N LYS B1692 " --> pdb=" O ALA B1688 " (cutoff:3.500A) Processing helix chain 'B' and resid 1695 through 1710 removed outlier: 3.996A pdb=" N ILE B1707 " --> pdb=" O TYR B1703 " (cutoff:3.500A) Processing helix chain 'B' and resid 1711 through 1723 removed outlier: 5.063A pdb=" N ASN B1723 " --> pdb=" O LEU B1719 " (cutoff:3.500A) Processing helix chain 'B' and resid 1730 through 1736 removed outlier: 3.931A pdb=" N ILE B1736 " --> pdb=" O GLU B1732 " (cutoff:3.500A) Processing helix chain 'B' and resid 1784 through 1803 removed outlier: 3.680A pdb=" N ALA B1789 " --> pdb=" O ASP B1785 " (cutoff:3.500A) Processing helix chain 'B' and resid 1813 through 1832 Proline residue: B1820 - end of helix removed outlier: 4.251A pdb=" N GLY B1832 " --> pdb=" O LEU B1828 " (cutoff:3.500A) Processing helix chain 'B' and resid 1835 through 1847 Processing helix chain 'B' and resid 1893 through 1898 removed outlier: 3.545A pdb=" N MET B1897 " --> pdb=" O GLY B1893 " (cutoff:3.500A) removed outlier: 5.671A pdb=" N LYS B1898 " --> pdb=" O LEU B1894 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 1893 through 1898' Processing helix chain 'B' and resid 1901 through 1948 removed outlier: 4.481A pdb=" N LEU B1909 " --> pdb=" O LEU B1905 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N LEU B1910 " --> pdb=" O GLN B1906 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N VAL B1948 " --> pdb=" O ARG B1944 " (cutoff:3.500A) Processing helix chain 'B' and resid 2000 through 2012 removed outlier: 3.750A pdb=" N LEU B2004 " --> pdb=" O PHE B2000 " (cutoff:3.500A) Processing helix chain 'B' and resid 2024 through 2039 removed outlier: 3.658A pdb=" N TYR B2039 " --> pdb=" O GLU B2035 " (cutoff:3.500A) Processing helix chain 'B' and resid 2058 through 2073 removed outlier: 3.545A pdb=" N VAL B2068 " --> pdb=" O SER B2064 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N GLU B2073 " --> pdb=" O ARG B2069 " (cutoff:3.500A) Processing helix chain 'B' and resid 2078 through 2095 removed outlier: 3.743A pdb=" N VAL B2082 " --> pdb=" O ASP B2078 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N LEU B2088 " --> pdb=" O ALA B2084 " (cutoff:3.500A) Processing helix chain 'B' and resid 2096 through 2106 removed outlier: 3.899A pdb=" N ALA B2102 " --> pdb=" O GLY B2098 " (cutoff:3.500A) removed outlier: 4.307A pdb=" N LEU B2103 " --> pdb=" O LEU B2099 " (cutoff:3.500A) Proline residue: B2104 - end of helix Processing helix chain 'B' and resid 2113 through 2134 removed outlier: 5.148A pdb=" N ARG B2134 " --> pdb=" O LEU B2130 " (cutoff:3.500A) Processing helix chain 'B' and resid 2136 through 2153 removed outlier: 4.195A pdb=" N GLU B2140 " --> pdb=" O GLY B2136 " (cutoff:3.500A) removed outlier: 6.009A pdb=" N LYS B2141 " --> pdb=" O LYS B2137 " (cutoff:3.500A) removed outlier: 5.307A pdb=" N LEU B2142 " --> pdb=" O GLU B2138 " (cutoff:3.500A) Processing helix chain 'B' and resid 2154 through 2159 removed outlier: 3.719A pdb=" N GLN B2158 " --> pdb=" O LYS B2154 " (cutoff:3.500A) removed outlier: 5.616A pdb=" N HIS B2159 " --> pdb=" O VAL B2155 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 2154 through 2159' Processing helix chain 'B' and resid 2160 through 2167 removed outlier: 3.957A pdb=" N GLY B2167 " --> pdb=" O MET B2163 " (cutoff:3.500A) Processing helix chain 'B' and resid 2168 through 2181 removed outlier: 4.087A pdb=" N GLY B2181 " --> pdb=" O VAL B2177 " (cutoff:3.500A) Processing helix chain 'B' and resid 2192 through 2208 removed outlier: 3.680A pdb=" N PHE B2200 " --> pdb=" O ASN B2196 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N TYR B2203 " --> pdb=" O ARG B2199 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N ILE B2207 " --> pdb=" O TYR B2203 " (cutoff:3.500A) removed outlier: 4.895A pdb=" N SER B2208 " --> pdb=" O PHE B2204 " (cutoff:3.500A) Processing helix chain 'B' and resid 2209 through 2219 removed outlier: 3.555A pdb=" N MET B2215 " --> pdb=" O ASN B2211 " (cutoff:3.500A) removed outlier: 3.733A pdb=" N ASP B2217 " --> pdb=" O LYS B2213 " (cutoff:3.500A) removed outlier: 4.622A pdb=" N HIS B2218 " --> pdb=" O ALA B2214 " (cutoff:3.500A) removed outlier: 4.521A pdb=" N LEU B2219 " --> pdb=" O MET B2215 " (cutoff:3.500A) Processing helix chain 'B' and resid 2220 through 2226 removed outlier: 3.953A pdb=" N GLU B2224 " --> pdb=" O SER B2220 " (cutoff:3.500A) Processing helix chain 'B' and resid 2239 through 2250 removed outlier: 3.978A pdb=" N VAL B2248 " --> pdb=" O ALA B2244 " (cutoff:3.500A) removed outlier: 5.629A pdb=" N ASP B2250 " --> pdb=" O ALA B2246 " (cutoff:3.500A) Processing helix chain 'B' and resid 2251 through 2258 Processing helix chain 'B' and resid 2259 through 2271 removed outlier: 4.350A pdb=" N LEU B2263 " --> pdb=" O ARG B2259 " (cutoff:3.500A) removed outlier: 4.277A pdb=" N ALA B2271 " --> pdb=" O VAL B2267 " (cutoff:3.500A) Processing helix chain 'B' and resid 2294 through 2309 removed outlier: 4.658A pdb=" N ARG B2298 " --> pdb=" O VAL B2294 " (cutoff:3.500A) removed outlier: 3.864A pdb=" N TYR B2299 " --> pdb=" O GLU B2295 " (cutoff:3.500A) removed outlier: 4.665A pdb=" N CYS B2309 " --> pdb=" O PHE B2305 " (cutoff:3.500A) Processing helix chain 'B' and resid 2314 through 2329 removed outlier: 4.185A pdb=" N ALA B2318 " --> pdb=" O VAL B2314 " (cutoff:3.500A) Proline residue: B2329 - end of helix Processing helix chain 'B' and resid 2343 through 2351 removed outlier: 3.779A pdb=" N GLU B2349 " --> pdb=" O LEU B2345 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N GLU B2350 " --> pdb=" O ALA B2346 " (cutoff:3.500A) removed outlier: 4.324A pdb=" N ALA B2351 " --> pdb=" O ALA B2347 " (cutoff:3.500A) Processing helix chain 'B' and resid 2386 through 2403 removed outlier: 3.918A pdb=" N MET B2390 " --> pdb=" O GLY B2386 " (cutoff:3.500A) removed outlier: 4.813A pdb=" N CYS B2403 " --> pdb=" O LEU B2399 " (cutoff:3.500A) Processing helix chain 'B' and resid 2417 through 2427 removed outlier: 3.935A pdb=" N ILE B2423 " --> pdb=" O ARG B2419 " (cutoff:3.500A) Processing helix chain 'B' and resid 2432 through 2442 removed outlier: 4.028A pdb=" N PHE B2441 " --> pdb=" O ILE B2437 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N GLN B2442 " --> pdb=" O SER B2438 " (cutoff:3.500A) Processing helix chain 'B' and resid 2461 through 2476 removed outlier: 4.104A pdb=" N HIS B2465 " --> pdb=" O PHE B2461 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N LYS B2466 " --> pdb=" O CYS B2462 " (cutoff:3.500A) Processing helix chain 'B' and resid 2481 through 2488 removed outlier: 4.063A pdb=" N LEU B2488 " --> pdb=" O PHE B2484 " (cutoff:3.500A) Processing helix chain 'B' and resid 2492 through 2500 removed outlier: 4.309A pdb=" N ASP B2496 " --> pdb=" O GLY B2492 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N ALA B2500 " --> pdb=" O ASP B2496 " (cutoff:3.500A) Processing helix chain 'B' and resid 2514 through 2529 removed outlier: 5.190A pdb=" N ASN B2518 " --> pdb=" O ALA B2514 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N ARG B2519 " --> pdb=" O LEU B2515 " (cutoff:3.500A) removed outlier: 3.613A pdb=" N CYS B2522 " --> pdb=" O ASN B2518 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N LEU B2526 " --> pdb=" O CYS B2522 " (cutoff:3.500A) Proline residue: B2527 - end of helix Processing helix chain 'B' and resid 2535 through 2553 removed outlier: 4.252A pdb=" N THR B2539 " --> pdb=" O LEU B2535 " (cutoff:3.500A) Processing helix chain 'B' and resid 2558 through 2576 removed outlier: 3.539A pdb=" N LYS B2564 " --> pdb=" O CYS B2560 " (cutoff:3.500A) removed outlier: 4.355A pdb=" N SER B2576 " --> pdb=" O VAL B2572 " (cutoff:3.500A) Processing helix chain 'B' and resid 2582 through 2601 removed outlier: 3.722A pdb=" N MET B2586 " --> pdb=" O ARG B2582 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N ARG B2592 " --> pdb=" O HIS B2588 " (cutoff:3.500A) Proline residue: B2598 - end of helix Processing helix chain 'B' and resid 2605 through 2627 removed outlier: 4.142A pdb=" N ARG B2617 " --> pdb=" O ASN B2613 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N CYS B2618 " --> pdb=" O HIS B2614 " (cutoff:3.500A) Proline residue: B2625 - end of helix Processing helix chain 'B' and resid 2634 through 2653 removed outlier: 3.995A pdb=" N LEU B2653 " --> pdb=" O ILE B2649 " (cutoff:3.500A) Processing helix chain 'B' and resid 2658 through 2679 Proline residue: B2668 - end of helix Proline residue: B2678 - end of helix Processing helix chain 'B' and resid 2715 through 2741 removed outlier: 3.731A pdb=" N PHE B2721 " --> pdb=" O LYS B2717 " (cutoff:3.500A) removed outlier: 4.009A pdb=" N LYS B2724 " --> pdb=" O TYR B2720 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N GLU B2727 " --> pdb=" O ASN B2723 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ASN B2740 " --> pdb=" O ASP B2736 " (cutoff:3.500A) Processing helix chain 'B' and resid 2760 through 2765 removed outlier: 3.927A pdb=" N LEU B2764 " --> pdb=" O PRO B2760 " (cutoff:3.500A) removed outlier: 6.016A pdb=" N SER B2765 " --> pdb=" O TYR B2761 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 2760 through 2765' Processing helix chain 'B' and resid 2768 through 2785 removed outlier: 4.697A pdb=" N TYR B2772 " --> pdb=" O GLU B2768 " (cutoff:3.500A) Proline residue: B2775 - end of helix Processing helix chain 'B' and resid 2835 through 2865 removed outlier: 3.708A pdb=" N SER B2863 " --> pdb=" O LEU B2859 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N LYS B2864 " --> pdb=" O GLU B2860 " (cutoff:3.500A) removed outlier: 3.938A pdb=" N GLY B2865 " --> pdb=" O LEU B2861 " (cutoff:3.500A) Processing helix chain 'B' and resid 2882 through 2899 removed outlier: 4.542A pdb=" N ASP B2886 " --> pdb=" O GLU B2882 " (cutoff:3.500A) removed outlier: 4.815A pdb=" N LYS B2889 " --> pdb=" O LYS B2885 " (cutoff:3.500A) removed outlier: 4.309A pdb=" N ILE B2893 " --> pdb=" O LYS B2889 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N LEU B2894 " --> pdb=" O ALA B2890 " (cutoff:3.500A) Processing helix chain 'B' and resid 2982 through 3003 removed outlier: 4.342A pdb=" N ALA B2986 " --> pdb=" O TYR B2982 " (cutoff:3.500A) Proline residue: B2990 - end of helix Processing helix chain 'B' and resid 3009 through 3028 Processing helix chain 'B' and resid 3034 through 3053 removed outlier: 3.684A pdb=" N GLY B3038 " --> pdb=" O LEU B3034 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N GLU B3052 " --> pdb=" O LYS B3048 " (cutoff:3.500A) removed outlier: 5.053A pdb=" N SER B3053 " --> pdb=" O THR B3049 " (cutoff:3.500A) Processing helix chain 'B' and resid 3061 through 3082 removed outlier: 5.307A pdb=" N ALA B3065 " --> pdb=" O PHE B3061 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N LEU B3069 " --> pdb=" O ALA B3065 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N GLU B3070 " --> pdb=" O ALA B3066 " (cutoff:3.500A) removed outlier: 4.115A pdb=" N THR B3082 " --> pdb=" O GLN B3078 " (cutoff:3.500A) Processing helix chain 'B' and resid 3098 through 3117 removed outlier: 4.379A pdb=" N LEU B3102 " --> pdb=" O THR B3098 " (cutoff:3.500A) removed outlier: 4.336A pdb=" N LEU B3103 " --> pdb=" O THR B3099 " (cutoff:3.500A) Proline residue: B3104 - end of helix removed outlier: 4.230A pdb=" N GLN B3117 " --> pdb=" O ILE B3113 " (cutoff:3.500A) Processing helix chain 'B' and resid 3125 through 3144 removed outlier: 4.369A pdb=" N SER B3144 " --> pdb=" O ALA B3140 " (cutoff:3.500A) Processing helix chain 'B' and resid 3150 through 3164 Processing helix chain 'B' and resid 3171 through 3183 removed outlier: 3.893A pdb=" N TYR B3182 " --> pdb=" O LYS B3178 " (cutoff:3.500A) removed outlier: 4.218A pdb=" N SER B3183 " --> pdb=" O HIS B3179 " (cutoff:3.500A) Processing helix chain 'B' and resid 3613 through 3629 removed outlier: 4.116A pdb=" N ALA B3617 " --> pdb=" O PRO B3613 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ASN B3619 " --> pdb=" O HIS B3615 " (cutoff:3.500A) Processing helix chain 'B' and resid 3637 through 3647 removed outlier: 4.631A pdb=" N LYS B3647 " --> pdb=" O GLU B3643 " (cutoff:3.500A) Processing helix chain 'B' and resid 3663 through 3678 removed outlier: 3.546A pdb=" N THR B3678 " --> pdb=" O ARG B3674 " (cutoff:3.500A) Processing helix chain 'B' and resid 3686 through 3700 removed outlier: 4.430A pdb=" N CYS B3700 " --> pdb=" O MET B3696 " (cutoff:3.500A) Processing helix chain 'B' and resid 3714 through 3736 removed outlier: 3.590A pdb=" N ASP B3734 " --> pdb=" O ALA B3730 " (cutoff:3.500A) removed outlier: 4.904A pdb=" N ARG B3735 " --> pdb=" O ARG B3731 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N GLY B3736 " --> pdb=" O LEU B3732 " (cutoff:3.500A) Processing helix chain 'B' and resid 3737 through 3749 removed outlier: 3.876A pdb=" N VAL B3741 " --> pdb=" O ALA B3737 " (cutoff:3.500A) removed outlier: 4.945A pdb=" N LYS B3749 " --> pdb=" O ILE B3745 " (cutoff:3.500A) Processing helix chain 'B' and resid 3753 through 3768 removed outlier: 3.534A pdb=" N ALA B3757 " --> pdb=" O GLY B3753 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA B3765 " --> pdb=" O LYS B3761 " (cutoff:3.500A) Processing helix chain 'B' and resid 3771 through 3786 removed outlier: 3.909A pdb=" N LYS B3785 " --> pdb=" O TYR B3781 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N LYS B3786 " --> pdb=" O LEU B3782 " (cutoff:3.500A) Processing helix chain 'B' and resid 3787 through 3801 removed outlier: 4.074A pdb=" N PHE B3791 " --> pdb=" O ASP B3787 " (cutoff:3.500A) removed outlier: 4.258A pdb=" N SER B3800 " --> pdb=" O GLY B3796 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N CYS B3801 " --> pdb=" O LEU B3797 " (cutoff:3.500A) Processing helix chain 'B' and resid 3805 through 3816 removed outlier: 4.298A pdb=" N PHE B3809 " --> pdb=" O ASP B3805 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N ALA B3815 " --> pdb=" O ARG B3811 " (cutoff:3.500A) removed outlier: 4.720A pdb=" N GLU B3816 " --> pdb=" O GLN B3812 " (cutoff:3.500A) Processing helix chain 'B' and resid 3834 through 3849 removed outlier: 4.293A pdb=" N CYS B3848 " --> pdb=" O LEU B3844 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N GLU B3849 " --> pdb=" O GLN B3845 " (cutoff:3.500A) Processing helix chain 'B' and resid 3852 through 3861 Processing helix chain 'B' and resid 3870 through 3894 removed outlier: 3.769A pdb=" N SER B3874 " --> pdb=" O ASN B3870 " (cutoff:3.500A) Processing helix chain 'B' and resid 3900 through 3926 removed outlier: 3.608A pdb=" N ASN B3919 " --> pdb=" O LYS B3915 " (cutoff:3.500A) Processing helix chain 'B' and resid 3929 through 3940 removed outlier: 5.230A pdb=" N ARG B3940 " --> pdb=" O LEU B3936 " (cutoff:3.500A) Processing helix chain 'B' and resid 3941 through 3960 removed outlier: 3.605A pdb=" N HIS B3954 " --> pdb=" O HIS B3950 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N MET B3957 " --> pdb=" O ALA B3953 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N LYS B3958 " --> pdb=" O HIS B3954 " (cutoff:3.500A) Processing helix chain 'B' and resid 3965 through 3988 removed outlier: 3.710A pdb=" N GLU B3988 " --> pdb=" O LEU B3984 " (cutoff:3.500A) Processing helix chain 'B' and resid 3994 through 4012 removed outlier: 3.513A pdb=" N SER B4008 " --> pdb=" O LEU B4004 " (cutoff:3.500A) removed outlier: 5.472A pdb=" N ASN B4009 " --> pdb=" O VAL B4005 " (cutoff:3.500A) removed outlier: 7.142A pdb=" N ASN B4010 " --> pdb=" O GLU B4006 " (cutoff:3.500A) removed outlier: 4.838A pdb=" N VAL B4011 " --> pdb=" O SER B4007 " (cutoff:3.500A) removed outlier: 6.480A pdb=" N GLU B4012 " --> pdb=" O SER B4008 " (cutoff:3.500A) Processing helix chain 'B' and resid 4013 through 4028 removed outlier: 4.503A pdb=" N LEU B4024 " --> pdb=" O MET B4020 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N LYS B4025 " --> pdb=" O PHE B4021 " (cutoff:3.500A) Processing helix chain 'B' and resid 4031 through 4038 removed outlier: 4.088A pdb=" N GLU B4035 " --> pdb=" O ASP B4031 " (cutoff:3.500A) removed outlier: 5.086A pdb=" N TYR B4036 " --> pdb=" O THR B4032 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N ASP B4037 " --> pdb=" O PHE B4033 " (cutoff:3.500A) Proline residue: B4038 - end of helix No H-bonds generated for 'chain 'B' and resid 4031 through 4038' Processing helix chain 'B' and resid 4045 through 4057 Processing helix chain 'B' and resid 4060 through 4071 Processing helix chain 'B' and resid 4086 through 4110 Proline residue: B4091 - end of helix Processing helix chain 'B' and resid 4113 through 4124 removed outlier: 3.736A pdb=" N ALA B4123 " --> pdb=" O PHE B4119 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N GLU B4124 " --> pdb=" O LEU B4120 " (cutoff:3.500A) Processing helix chain 'B' and resid 4125 through 4132 removed outlier: 3.547A pdb=" N GLN B4131 " --> pdb=" O LEU B4127 " (cutoff:3.500A) Proline residue: B4132 - end of helix Processing helix chain 'B' and resid 4154 through 4163 removed outlier: 3.553A pdb=" N ARG B4158 " --> pdb=" O SER B4154 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N LYS B4163 " --> pdb=" O THR B4159 " (cutoff:3.500A) Processing helix chain 'B' and resid 4164 through 4180 Processing helix chain 'B' and resid 4182 through 4207 removed outlier: 4.497A pdb=" N MET B4187 " --> pdb=" O GLU B4183 " (cutoff:3.500A) removed outlier: 4.892A pdb=" N GLU B4188 " --> pdb=" O LYS B4184 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N ILE B4207 " --> pdb=" O LEU B4203 " (cutoff:3.500A) Processing helix chain 'B' and resid 4486 through 4500 removed outlier: 3.888A pdb=" N GLN B4490 " --> pdb=" O ILE B4486 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N PHE B4500 " --> pdb=" O PHE B4496 " (cutoff:3.500A) Processing helix chain 'B' and resid 4501 through 4519 removed outlier: 3.518A pdb=" N ILE B4517 " --> pdb=" O ALA B4513 " (cutoff:3.500A) removed outlier: 4.790A pdb=" N LEU B4519 " --> pdb=" O ASN B4515 " (cutoff:3.500A) Processing helix chain 'B' and resid 4570 through 4614 removed outlier: 3.998A pdb=" N LYS B4595 " --> pdb=" O TYR B4591 " (cutoff:3.500A) removed outlier: 5.283A pdb=" N VAL B4596 " --> pdb=" O TYR B4592 " (cutoff:3.500A) Proline residue: B4597 - end of helix Processing helix chain 'B' and resid 4626 through 4639 removed outlier: 3.973A pdb=" N ASP B4632 " --> pdb=" O LYS B4628 " (cutoff:3.500A) removed outlier: 4.818A pdb=" N ARG B4633 " --> pdb=" O GLY B4629 " (cutoff:3.500A) removed outlier: 5.440A pdb=" N LEU B4634 " --> pdb=" O GLN B4630 " (cutoff:3.500A) removed outlier: 5.315A pdb=" N VAL B4635 " --> pdb=" O TRP B4631 " (cutoff:3.500A) removed outlier: 4.340A pdb=" N ILE B4636 " --> pdb=" O ASP B4632 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N ASN B4637 " --> pdb=" O ARG B4633 " (cutoff:3.500A) removed outlier: 4.979A pdb=" N THR B4638 " --> pdb=" O LEU B4634 " (cutoff:3.500A) removed outlier: 5.372A pdb=" N GLN B4639 " --> pdb=" O VAL B4635 " (cutoff:3.500A) Processing helix chain 'B' and resid 4647 through 4663 removed outlier: 4.799A pdb=" N LYS B4651 " --> pdb=" O ASP B4647 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ARG B4652 " --> pdb=" O LYS B4648 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N GLY B4659 " --> pdb=" O MET B4655 " (cutoff:3.500A) removed outlier: 5.310A pdb=" N GLU B4660 " --> pdb=" O ASP B4656 " (cutoff:3.500A) removed outlier: 5.518A pdb=" N PHE B4661 " --> pdb=" O LYS B4657 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N TYR B4662 " --> pdb=" O TYR B4658 " (cutoff:3.500A) Processing helix chain 'B' and resid 4664 through 4672 Processing helix chain 'B' and resid 4704 through 4717 removed outlier: 3.561A pdb=" N THR B4716 " --> pdb=" O GLY B4712 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N ASP B4717 " --> pdb=" O VAL B4713 " (cutoff:3.500A) Processing helix chain 'B' and resid 4718 through 4737 Processing helix chain 'B' and resid 4744 through 4750 removed outlier: 5.484A pdb=" N ALA B4748 " --> pdb=" O LEU B4744 " (cutoff:3.500A) removed outlier: 4.631A pdb=" N MET B4749 " --> pdb=" O LEU B4745 " (cutoff:3.500A) removed outlier: 4.241A pdb=" N GLY B4750 " --> pdb=" O ASP B4746 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 4744 through 4750' Processing helix chain 'B' and resid 4752 through 4766 removed outlier: 4.210A pdb=" N ASN B4764 " --> pdb=" O SER B4760 " (cutoff:3.500A) removed outlier: 4.124A pdb=" N GLY B4765 " --> pdb=" O VAL B4761 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N LYS B4766 " --> pdb=" O THR B4762 " (cutoff:3.500A) Processing helix chain 'B' and resid 4767 through 4790 removed outlier: 3.964A pdb=" N ALA B4786 " --> pdb=" O TYR B4782 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE B4787 " --> pdb=" O THR B4783 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ASN B4788 " --> pdb=" O VAL B4784 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N PHE B4789 " --> pdb=" O VAL B4785 " (cutoff:3.500A) removed outlier: 4.505A pdb=" N PHE B4790 " --> pdb=" O ALA B4786 " (cutoff:3.500A) Processing helix chain 'B' and resid 4809 through 4824 removed outlier: 3.795A pdb=" N CYS B4813 " --> pdb=" O ASP B4809 " (cutoff:3.500A) Processing helix chain 'B' and resid 4828 through 4833 removed outlier: 4.225A pdb=" N ILE B4832 " --> pdb=" O ILE B4828 " (cutoff:3.500A) removed outlier: 6.128A pdb=" N GLU B4833 " --> pdb=" O GLY B4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 4828 through 4833' Processing helix chain 'B' and resid 4838 through 4887 removed outlier: 4.226A pdb=" N ILE B4842 " --> pdb=" O ASP B4838 " (cutoff:3.500A) removed outlier: 5.038A pdb=" N TYR B4843 " --> pdb=" O GLU B4839 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N LEU B4860 " --> pdb=" O ILE B4856 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N GLU B4886 " --> pdb=" O LYS B4882 " (cutoff:3.500A) Processing helix chain 'B' and resid 4895 through 4903 removed outlier: 4.365A pdb=" N PHE B4899 " --> pdb=" O GLY B4895 " (cutoff:3.500A) removed outlier: 4.906A pdb=" N ASP B4900 " --> pdb=" O ASN B4896 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N THR B4901 " --> pdb=" O ASP B4897 " (cutoff:3.500A) removed outlier: 4.746A pdb=" N VAL B4902 " --> pdb=" O TYR B4898 " (cutoff:3.500A) Proline residue: B4903 - end of helix No H-bonds generated for 'chain 'B' and resid 4895 through 4903' Processing helix chain 'B' and resid 4904 through 4912 Processing helix chain 'B' and resid 4915 through 4930 removed outlier: 4.280A pdb=" N TYR B4919 " --> pdb=" O ASN B4915 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N LEU B4920 " --> pdb=" O LEU B4916 " (cutoff:3.500A) removed outlier: 4.650A pdb=" N ASP B4930 " --> pdb=" O LEU B4926 " (cutoff:3.500A) Processing helix chain 'B' and resid 4935 through 4948 Processing helix chain 'B' and resid 4958 through 4964 removed outlier: 3.746A pdb=" N TYR B4963 " --> pdb=" O PHE B4959 " (cutoff:3.500A) Processing helix chain 'B' and resid 982 through 987 removed outlier: 4.821A pdb=" N ILE B 986 " --> pdb=" O LEU B 983 " (cutoff:3.500A) removed outlier: 4.957A pdb=" N LYS B 987 " --> pdb=" O SER B 984 " (cutoff:3.500A) Processing helix chain 'B' and resid 4738 through 4743 removed outlier: 4.394A pdb=" N ALA B4741 " --> pdb=" O PHE B4738 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N ALA B4742 " --> pdb=" O PHE B4739 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N HIS B4743 " --> pdb=" O PHE B4740 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 4738 through 4743' Processing helix chain 'B' and resid 54 through 59 Proline residue: B 59 - end of helix No H-bonds generated for 'chain 'B' and resid 54 through 59' Processing helix chain 'B' and resid 4615 through 4620 Processing helix chain 'D' and resid 61 through 66 removed outlier: 5.191A pdb=" N CYS D 65 " --> pdb=" O ASP D 61 " (cutoff:3.500A) Processing helix chain 'D' and resid 74 through 85 removed outlier: 5.006A pdb=" N THR D 85 " --> pdb=" O MET D 81 " (cutoff:3.500A) Processing helix chain 'D' and resid 266 through 271 removed outlier: 3.676A pdb=" N HIS D 270 " --> pdb=" O ALA D 266 " (cutoff:3.500A) removed outlier: 4.693A pdb=" N ALA D 271 " --> pdb=" O VAL D 267 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 266 through 271' Processing helix chain 'D' and resid 409 through 439 removed outlier: 3.587A pdb=" N VAL D 418 " --> pdb=" O ARG D 414 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ARG D 420 " --> pdb=" O ALA D 416 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N LEU D 436 " --> pdb=" O GLY D 432 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N LYS D 438 " --> pdb=" O ASP D 434 " (cutoff:3.500A) Processing helix chain 'D' and resid 449 through 464 removed outlier: 3.725A pdb=" N SER D 453 " --> pdb=" O ILE D 449 " (cutoff:3.500A) Processing helix chain 'D' and resid 471 through 493 removed outlier: 3.780A pdb=" N PHE D 489 " --> pdb=" O ARG D 485 " (cutoff:3.500A) Processing helix chain 'D' and resid 494 through 507 removed outlier: 5.214A pdb=" N VAL D 507 " --> pdb=" O ASP D 503 " (cutoff:3.500A) Processing helix chain 'D' and resid 519 through 542 removed outlier: 4.015A pdb=" N GLY D 523 " --> pdb=" O GLY D 519 " (cutoff:3.500A) removed outlier: 4.970A pdb=" N SER D 525 " --> pdb=" O GLU D 521 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N TRP D 526 " --> pdb=" O ALA D 522 " (cutoff:3.500A) removed outlier: 5.256A pdb=" N LYS D 527 " --> pdb=" O GLY D 523 " (cutoff:3.500A) removed outlier: 5.569A pdb=" N SER D 528 " --> pdb=" O GLU D 524 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N ILE D 541 " --> pdb=" O LEU D 537 " (cutoff:3.500A) removed outlier: 4.373A pdb=" N ARG D 542 " --> pdb=" O ALA D 538 " (cutoff:3.500A) Processing helix chain 'D' and resid 544 through 552 removed outlier: 4.441A pdb=" N CYS D 548 " --> pdb=" O ASN D 544 " (cutoff:3.500A) removed outlier: 4.424A pdb=" N SER D 552 " --> pdb=" O CYS D 548 " (cutoff:3.500A) Processing helix chain 'D' and resid 553 through 563 removed outlier: 4.487A pdb=" N TRP D 557 " --> pdb=" O GLY D 553 " (cutoff:3.500A) removed outlier: 4.089A pdb=" N GLU D 563 " --> pdb=" O ILE D 559 " (cutoff:3.500A) Processing helix chain 'D' and resid 567 through 582 removed outlier: 3.644A pdb=" N ILE D 571 " --> pdb=" O ALA D 567 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N GLU D 581 " --> pdb=" O CYS D 577 " (cutoff:3.500A) Processing helix chain 'D' and resid 583 through 589 removed outlier: 3.754A pdb=" N ASN D 587 " --> pdb=" O PRO D 583 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N ILE D 588 " --> pdb=" O GLU D 584 " (cutoff:3.500A) Processing helix chain 'D' and resid 590 through 605 removed outlier: 3.817A pdb=" N ILE D 594 " --> pdb=" O LYS D 590 " (cutoff:3.500A) Processing helix chain 'D' and resid 607 through 620 removed outlier: 3.695A pdb=" N LEU D 611 " --> pdb=" O ASN D 607 " (cutoff:3.500A) removed outlier: 4.916A pdb=" N CYS D 620 " --> pdb=" O SER D 616 " (cutoff:3.500A) Processing helix chain 'D' and resid 625 through 636 Processing helix chain 'D' and resid 821 through 827 removed outlier: 4.356A pdb=" N ALA D 825 " --> pdb=" O PRO D 821 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N VAL D 826 " --> pdb=" O CYS D 822 " (cutoff:3.500A) removed outlier: 4.399A pdb=" N LEU D 827 " --> pdb=" O TYR D 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 821 through 827' Processing helix chain 'D' and resid 876 through 901 removed outlier: 3.816A pdb=" N ARG D 880 " --> pdb=" O PRO D 876 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N ILE D 881 " --> pdb=" O HIS D 877 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N GLU D 891 " --> pdb=" O GLU D 887 " (cutoff:3.500A) removed outlier: 3.845A pdb=" N LEU D 892 " --> pdb=" O ASN D 888 " (cutoff:3.500A) Processing helix chain 'D' and resid 920 through 925 Proline residue: D 925 - end of helix Processing helix chain 'D' and resid 929 through 946 removed outlier: 4.269A pdb=" N MET D 935 " --> pdb=" O TYR D 931 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N LEU D 940 " --> pdb=" O SER D 936 " (cutoff:3.500A) Processing helix chain 'D' and resid 989 through 1014 removed outlier: 3.708A pdb=" N ASP D 997 " --> pdb=" O GLU D 993 " (cutoff:3.500A) removed outlier: 5.259A pdb=" N ARG D1013 " --> pdb=" O ARG D1009 " (cutoff:3.500A) removed outlier: 4.687A pdb=" N GLN D1014 " --> pdb=" O ASP D1010 " (cutoff:3.500A) Processing helix chain 'D' and resid 1042 through 1059 removed outlier: 4.880A pdb=" N ASN D1046 " --> pdb=" O THR D1042 " (cutoff:3.500A) Processing helix chain 'D' and resid 1220 through 1225 removed outlier: 5.888A pdb=" N LYS D1225 " --> pdb=" O VAL D1221 " (cutoff:3.500A) Processing helix chain 'D' and resid 1229 through 1235 removed outlier: 4.985A pdb=" N GLN D1233 " --> pdb=" O ILE D1229 " (cutoff:3.500A) removed outlier: 6.422A pdb=" N GLU D1234 " --> pdb=" O CYS D1230 " (cutoff:3.500A) Processing helix chain 'D' and resid 1238 through 1244 removed outlier: 4.716A pdb=" N ASN D1242 " --> pdb=" O PRO D1238 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N THR D1243 " --> pdb=" O PHE D1239 " (cutoff:3.500A) removed outlier: 4.726A pdb=" N ASN D1244 " --> pdb=" O ALA D1240 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1238 through 1244' Processing helix chain 'D' and resid 1570 through 1576 removed outlier: 4.183A pdb=" N GLU D1574 " --> pdb=" O LEU D1570 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N LYS D1576 " --> pdb=" O LYS D1572 " (cutoff:3.500A) Processing helix chain 'D' and resid 1640 through 1648 removed outlier: 3.948A pdb=" N LEU D1644 " --> pdb=" O ASP D1640 " (cutoff:3.500A) removed outlier: 4.388A pdb=" N THR D1645 " --> pdb=" O ILE D1641 " (cutoff:3.500A) removed outlier: 6.099A pdb=" N GLU D1646 " --> pdb=" O LEU D1642 " (cutoff:3.500A) removed outlier: 4.593A pdb=" N GLN D1647 " --> pdb=" O GLU D1643 " (cutoff:3.500A) removed outlier: 4.615A pdb=" N GLU D1648 " --> pdb=" O LEU D1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1640 through 1648' Processing helix chain 'D' and resid 1649 through 1666 removed outlier: 4.292A pdb=" N ALA D1666 " --> pdb=" O SER D1662 " (cutoff:3.500A) Processing helix chain 'D' and resid 1669 through 1680 Processing helix chain 'D' and resid 1681 through 1692 removed outlier: 3.661A pdb=" N LEU D1685 " --> pdb=" O ASP D1681 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N GLU D1690 " --> pdb=" O LEU D1686 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N ASN D1691 " --> pdb=" O TYR D1687 " (cutoff:3.500A) removed outlier: 5.800A pdb=" N LYS D1692 " --> pdb=" O ALA D1688 " (cutoff:3.500A) Processing helix chain 'D' and resid 1695 through 1710 removed outlier: 3.996A pdb=" N ILE D1707 " --> pdb=" O TYR D1703 " (cutoff:3.500A) Processing helix chain 'D' and resid 1711 through 1723 removed outlier: 5.063A pdb=" N ASN D1723 " --> pdb=" O LEU D1719 " (cutoff:3.500A) Processing helix chain 'D' and resid 1730 through 1736 removed outlier: 3.931A pdb=" N ILE D1736 " --> pdb=" O GLU D1732 " (cutoff:3.500A) Processing helix chain 'D' and resid 1784 through 1803 removed outlier: 3.681A pdb=" N ALA D1789 " --> pdb=" O ASP D1785 " (cutoff:3.500A) Processing helix chain 'D' and resid 1813 through 1832 Proline residue: D1820 - end of helix removed outlier: 4.250A pdb=" N GLY D1832 " --> pdb=" O LEU D1828 " (cutoff:3.500A) Processing helix chain 'D' and resid 1835 through 1847 Processing helix chain 'D' and resid 1893 through 1898 removed outlier: 3.544A pdb=" N MET D1897 " --> pdb=" O GLY D1893 " (cutoff:3.500A) removed outlier: 5.671A pdb=" N LYS D1898 " --> pdb=" O LEU D1894 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1893 through 1898' Processing helix chain 'D' and resid 1901 through 1948 removed outlier: 4.481A pdb=" N LEU D1909 " --> pdb=" O LEU D1905 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N LEU D1910 " --> pdb=" O GLN D1906 " (cutoff:3.500A) removed outlier: 4.413A pdb=" N VAL D1948 " --> pdb=" O ARG D1944 " (cutoff:3.500A) Processing helix chain 'D' and resid 2000 through 2012 removed outlier: 3.750A pdb=" N LEU D2004 " --> pdb=" O PHE D2000 " (cutoff:3.500A) Processing helix chain 'D' and resid 2024 through 2039 removed outlier: 3.659A pdb=" N TYR D2039 " --> pdb=" O GLU D2035 " (cutoff:3.500A) Processing helix chain 'D' and resid 2058 through 2073 removed outlier: 3.546A pdb=" N VAL D2068 " --> pdb=" O SER D2064 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N GLU D2073 " --> pdb=" O ARG D2069 " (cutoff:3.500A) Processing helix chain 'D' and resid 2078 through 2095 removed outlier: 3.743A pdb=" N VAL D2082 " --> pdb=" O ASP D2078 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N LEU D2088 " --> pdb=" O ALA D2084 " (cutoff:3.500A) Processing helix chain 'D' and resid 2096 through 2106 removed outlier: 3.900A pdb=" N ALA D2102 " --> pdb=" O GLY D2098 " (cutoff:3.500A) removed outlier: 4.307A pdb=" N LEU D2103 " --> pdb=" O LEU D2099 " (cutoff:3.500A) Proline residue: D2104 - end of helix Processing helix chain 'D' and resid 2113 through 2134 removed outlier: 5.148A pdb=" N ARG D2134 " --> pdb=" O LEU D2130 " (cutoff:3.500A) Processing helix chain 'D' and resid 2136 through 2153 removed outlier: 4.196A pdb=" N GLU D2140 " --> pdb=" O GLY D2136 " (cutoff:3.500A) removed outlier: 6.009A pdb=" N LYS D2141 " --> pdb=" O LYS D2137 " (cutoff:3.500A) removed outlier: 5.307A pdb=" N LEU D2142 " --> pdb=" O GLU D2138 " (cutoff:3.500A) Processing helix chain 'D' and resid 2154 through 2159 removed outlier: 3.718A pdb=" N GLN D2158 " --> pdb=" O LYS D2154 " (cutoff:3.500A) removed outlier: 5.617A pdb=" N HIS D2159 " --> pdb=" O VAL D2155 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 2154 through 2159' Processing helix chain 'D' and resid 2160 through 2167 removed outlier: 3.957A pdb=" N GLY D2167 " --> pdb=" O MET D2163 " (cutoff:3.500A) Processing helix chain 'D' and resid 2168 through 2181 removed outlier: 4.087A pdb=" N GLY D2181 " --> pdb=" O VAL D2177 " (cutoff:3.500A) Processing helix chain 'D' and resid 2192 through 2208 removed outlier: 3.680A pdb=" N PHE D2200 " --> pdb=" O ASN D2196 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N TYR D2203 " --> pdb=" O ARG D2199 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N ILE D2207 " --> pdb=" O TYR D2203 " (cutoff:3.500A) removed outlier: 4.895A pdb=" N SER D2208 " --> pdb=" O PHE D2204 " (cutoff:3.500A) Processing helix chain 'D' and resid 2209 through 2219 removed outlier: 3.555A pdb=" N MET D2215 " --> pdb=" O ASN D2211 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N ASP D2217 " --> pdb=" O LYS D2213 " (cutoff:3.500A) removed outlier: 4.622A pdb=" N HIS D2218 " --> pdb=" O ALA D2214 " (cutoff:3.500A) removed outlier: 4.522A pdb=" N LEU D2219 " --> pdb=" O MET D2215 " (cutoff:3.500A) Processing helix chain 'D' and resid 2220 through 2226 removed outlier: 3.953A pdb=" N GLU D2224 " --> pdb=" O SER D2220 " (cutoff:3.500A) Processing helix chain 'D' and resid 2239 through 2250 removed outlier: 3.978A pdb=" N VAL D2248 " --> pdb=" O ALA D2244 " (cutoff:3.500A) removed outlier: 5.629A pdb=" N ASP D2250 " --> pdb=" O ALA D2246 " (cutoff:3.500A) Processing helix chain 'D' and resid 2251 through 2258 Processing helix chain 'D' and resid 2259 through 2271 removed outlier: 4.350A pdb=" N LEU D2263 " --> pdb=" O ARG D2259 " (cutoff:3.500A) removed outlier: 4.277A pdb=" N ALA D2271 " --> pdb=" O VAL D2267 " (cutoff:3.500A) Processing helix chain 'D' and resid 2294 through 2309 removed outlier: 4.658A pdb=" N ARG D2298 " --> pdb=" O VAL D2294 " (cutoff:3.500A) removed outlier: 3.864A pdb=" N TYR D2299 " --> pdb=" O GLU D2295 " (cutoff:3.500A) removed outlier: 4.665A pdb=" N CYS D2309 " --> pdb=" O PHE D2305 " (cutoff:3.500A) Processing helix chain 'D' and resid 2314 through 2329 removed outlier: 4.186A pdb=" N ALA D2318 " --> pdb=" O VAL D2314 " (cutoff:3.500A) Proline residue: D2329 - end of helix Processing helix chain 'D' and resid 2343 through 2351 removed outlier: 3.780A pdb=" N GLU D2349 " --> pdb=" O LEU D2345 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N GLU D2350 " --> pdb=" O ALA D2346 " (cutoff:3.500A) removed outlier: 4.324A pdb=" N ALA D2351 " --> pdb=" O ALA D2347 " (cutoff:3.500A) Processing helix chain 'D' and resid 2386 through 2403 removed outlier: 3.918A pdb=" N MET D2390 " --> pdb=" O GLY D2386 " (cutoff:3.500A) removed outlier: 4.813A pdb=" N CYS D2403 " --> pdb=" O LEU D2399 " (cutoff:3.500A) Processing helix chain 'D' and resid 2417 through 2427 removed outlier: 3.935A pdb=" N ILE D2423 " --> pdb=" O ARG D2419 " (cutoff:3.500A) Processing helix chain 'D' and resid 2432 through 2442 removed outlier: 4.028A pdb=" N PHE D2441 " --> pdb=" O ILE D2437 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N GLN D2442 " --> pdb=" O SER D2438 " (cutoff:3.500A) Processing helix chain 'D' and resid 2461 through 2476 removed outlier: 4.104A pdb=" N HIS D2465 " --> pdb=" O PHE D2461 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N LYS D2466 " --> pdb=" O CYS D2462 " (cutoff:3.500A) Processing helix chain 'D' and resid 2481 through 2488 removed outlier: 4.064A pdb=" N LEU D2488 " --> pdb=" O PHE D2484 " (cutoff:3.500A) Processing helix chain 'D' and resid 2492 through 2500 removed outlier: 4.309A pdb=" N ASP D2496 " --> pdb=" O GLY D2492 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ALA D2500 " --> pdb=" O ASP D2496 " (cutoff:3.500A) Processing helix chain 'D' and resid 2514 through 2529 removed outlier: 5.190A pdb=" N ASN D2518 " --> pdb=" O ALA D2514 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N ARG D2519 " --> pdb=" O LEU D2515 " (cutoff:3.500A) removed outlier: 3.613A pdb=" N CYS D2522 " --> pdb=" O ASN D2518 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N LEU D2526 " --> pdb=" O CYS D2522 " (cutoff:3.500A) Proline residue: D2527 - end of helix Processing helix chain 'D' and resid 2535 through 2553 Processing helix chain 'D' and resid 2558 through 2576 removed outlier: 3.539A pdb=" N LYS D2564 " --> pdb=" O CYS D2560 " (cutoff:3.500A) removed outlier: 4.356A pdb=" N SER D2576 " --> pdb=" O VAL D2572 " (cutoff:3.500A) Processing helix chain 'D' and resid 2582 through 2601 removed outlier: 3.722A pdb=" N MET D2586 " --> pdb=" O ARG D2582 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N ARG D2592 " --> pdb=" O HIS D2588 " (cutoff:3.500A) Proline residue: D2598 - end of helix Processing helix chain 'D' and resid 2605 through 2627 removed outlier: 4.142A pdb=" N ARG D2617 " --> pdb=" O ASN D2613 " (cutoff:3.500A) removed outlier: 3.900A pdb=" N CYS D2618 " --> pdb=" O HIS D2614 " (cutoff:3.500A) Proline residue: D2625 - end of helix Processing helix chain 'D' and resid 2634 through 2653 removed outlier: 3.995A pdb=" N LEU D2653 " --> pdb=" O ILE D2649 " (cutoff:3.500A) Processing helix chain 'D' and resid 2658 through 2679 Proline residue: D2668 - end of helix Proline residue: D2678 - end of helix Processing helix chain 'D' and resid 2715 through 2741 removed outlier: 3.730A pdb=" N PHE D2721 " --> pdb=" O LYS D2717 " (cutoff:3.500A) removed outlier: 4.009A pdb=" N LYS D2724 " --> pdb=" O TYR D2720 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N GLU D2727 " --> pdb=" O ASN D2723 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N ASN D2740 " --> pdb=" O ASP D2736 " (cutoff:3.500A) Processing helix chain 'D' and resid 2760 through 2765 removed outlier: 3.926A pdb=" N LEU D2764 " --> pdb=" O PRO D2760 " (cutoff:3.500A) removed outlier: 6.017A pdb=" N SER D2765 " --> pdb=" O TYR D2761 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 2760 through 2765' Processing helix chain 'D' and resid 2768 through 2785 removed outlier: 4.696A pdb=" N TYR D2772 " --> pdb=" O GLU D2768 " (cutoff:3.500A) Proline residue: D2775 - end of helix Processing helix chain 'D' and resid 2835 through 2865 removed outlier: 3.708A pdb=" N SER D2863 " --> pdb=" O LEU D2859 " (cutoff:3.500A) removed outlier: 4.413A pdb=" N LYS D2864 " --> pdb=" O GLU D2860 " (cutoff:3.500A) removed outlier: 3.938A pdb=" N GLY D2865 " --> pdb=" O LEU D2861 " (cutoff:3.500A) Processing helix chain 'D' and resid 2882 through 2899 removed outlier: 4.542A pdb=" N ASP D2886 " --> pdb=" O GLU D2882 " (cutoff:3.500A) removed outlier: 4.815A pdb=" N LYS D2889 " --> pdb=" O LYS D2885 " (cutoff:3.500A) removed outlier: 4.309A pdb=" N ILE D2893 " --> pdb=" O LYS D2889 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N LEU D2894 " --> pdb=" O ALA D2890 " (cutoff:3.500A) Processing helix chain 'D' and resid 2982 through 3003 removed outlier: 4.342A pdb=" N ALA D2986 " --> pdb=" O TYR D2982 " (cutoff:3.500A) Proline residue: D2990 - end of helix Processing helix chain 'D' and resid 3009 through 3028 Processing helix chain 'D' and resid 3034 through 3053 removed outlier: 3.684A pdb=" N GLY D3038 " --> pdb=" O LEU D3034 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N GLU D3052 " --> pdb=" O LYS D3048 " (cutoff:3.500A) removed outlier: 5.053A pdb=" N SER D3053 " --> pdb=" O THR D3049 " (cutoff:3.500A) Processing helix chain 'D' and resid 3061 through 3082 removed outlier: 5.307A pdb=" N ALA D3065 " --> pdb=" O PHE D3061 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N LEU D3069 " --> pdb=" O ALA D3065 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N GLU D3070 " --> pdb=" O ALA D3066 " (cutoff:3.500A) removed outlier: 4.115A pdb=" N THR D3082 " --> pdb=" O GLN D3078 " (cutoff:3.500A) Processing helix chain 'D' and resid 3098 through 3117 removed outlier: 4.380A pdb=" N LEU D3102 " --> pdb=" O THR D3098 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N LEU D3103 " --> pdb=" O THR D3099 " (cutoff:3.500A) Proline residue: D3104 - end of helix removed outlier: 4.230A pdb=" N GLN D3117 " --> pdb=" O ILE D3113 " (cutoff:3.500A) Processing helix chain 'D' and resid 3125 through 3144 removed outlier: 4.370A pdb=" N SER D3144 " --> pdb=" O ALA D3140 " (cutoff:3.500A) Processing helix chain 'D' and resid 3150 through 3164 Processing helix chain 'D' and resid 3171 through 3183 removed outlier: 3.893A pdb=" N TYR D3182 " --> pdb=" O LYS D3178 " (cutoff:3.500A) removed outlier: 4.218A pdb=" N SER D3183 " --> pdb=" O HIS D3179 " (cutoff:3.500A) Processing helix chain 'D' and resid 3613 through 3629 removed outlier: 4.117A pdb=" N ALA D3617 " --> pdb=" O PRO D3613 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ASN D3619 " --> pdb=" O HIS D3615 " (cutoff:3.500A) Processing helix chain 'D' and resid 3637 through 3647 removed outlier: 4.631A pdb=" N LYS D3647 " --> pdb=" O GLU D3643 " (cutoff:3.500A) Processing helix chain 'D' and resid 3663 through 3678 removed outlier: 3.546A pdb=" N THR D3678 " --> pdb=" O ARG D3674 " (cutoff:3.500A) Processing helix chain 'D' and resid 3686 through 3700 removed outlier: 4.430A pdb=" N CYS D3700 " --> pdb=" O MET D3696 " (cutoff:3.500A) Processing helix chain 'D' and resid 3714 through 3736 removed outlier: 3.590A pdb=" N ASP D3734 " --> pdb=" O ALA D3730 " (cutoff:3.500A) removed outlier: 4.904A pdb=" N ARG D3735 " --> pdb=" O ARG D3731 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLY D3736 " --> pdb=" O LEU D3732 " (cutoff:3.500A) Processing helix chain 'D' and resid 3737 through 3749 removed outlier: 3.877A pdb=" N VAL D3741 " --> pdb=" O ALA D3737 " (cutoff:3.500A) removed outlier: 4.945A pdb=" N LYS D3749 " --> pdb=" O ILE D3745 " (cutoff:3.500A) Processing helix chain 'D' and resid 3753 through 3768 removed outlier: 3.535A pdb=" N ALA D3757 " --> pdb=" O GLY D3753 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA D3765 " --> pdb=" O LYS D3761 " (cutoff:3.500A) Processing helix chain 'D' and resid 3771 through 3786 removed outlier: 3.909A pdb=" N LYS D3785 " --> pdb=" O TYR D3781 " (cutoff:3.500A) removed outlier: 4.873A pdb=" N LYS D3786 " --> pdb=" O LEU D3782 " (cutoff:3.500A) Processing helix chain 'D' and resid 3787 through 3801 removed outlier: 4.074A pdb=" N PHE D3791 " --> pdb=" O ASP D3787 " (cutoff:3.500A) removed outlier: 4.258A pdb=" N SER D3800 " --> pdb=" O GLY D3796 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N CYS D3801 " --> pdb=" O LEU D3797 " (cutoff:3.500A) Processing helix chain 'D' and resid 3805 through 3816 removed outlier: 4.299A pdb=" N PHE D3809 " --> pdb=" O ASP D3805 " (cutoff:3.500A) removed outlier: 3.955A pdb=" N ALA D3815 " --> pdb=" O ARG D3811 " (cutoff:3.500A) removed outlier: 4.719A pdb=" N GLU D3816 " --> pdb=" O GLN D3812 " (cutoff:3.500A) Processing helix chain 'D' and resid 3834 through 3849 removed outlier: 4.292A pdb=" N CYS D3848 " --> pdb=" O LEU D3844 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N GLU D3849 " --> pdb=" O GLN D3845 " (cutoff:3.500A) Processing helix chain 'D' and resid 3852 through 3861 Processing helix chain 'D' and resid 3870 through 3894 removed outlier: 3.769A pdb=" N SER D3874 " --> pdb=" O ASN D3870 " (cutoff:3.500A) Processing helix chain 'D' and resid 3900 through 3926 removed outlier: 3.608A pdb=" N ASN D3919 " --> pdb=" O LYS D3915 " (cutoff:3.500A) Processing helix chain 'D' and resid 3929 through 3940 removed outlier: 5.230A pdb=" N ARG D3940 " --> pdb=" O LEU D3936 " (cutoff:3.500A) Processing helix chain 'D' and resid 3941 through 3960 removed outlier: 3.604A pdb=" N HIS D3954 " --> pdb=" O HIS D3950 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N MET D3957 " --> pdb=" O ALA D3953 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N LYS D3958 " --> pdb=" O HIS D3954 " (cutoff:3.500A) Processing helix chain 'D' and resid 3965 through 3988 removed outlier: 3.710A pdb=" N GLU D3988 " --> pdb=" O LEU D3984 " (cutoff:3.500A) Processing helix chain 'D' and resid 3994 through 4012 removed outlier: 3.513A pdb=" N SER D4008 " --> pdb=" O LEU D4004 " (cutoff:3.500A) removed outlier: 5.472A pdb=" N ASN D4009 " --> pdb=" O VAL D4005 " (cutoff:3.500A) removed outlier: 7.142A pdb=" N ASN D4010 " --> pdb=" O GLU D4006 " (cutoff:3.500A) removed outlier: 4.837A pdb=" N VAL D4011 " --> pdb=" O SER D4007 " (cutoff:3.500A) removed outlier: 6.480A pdb=" N GLU D4012 " --> pdb=" O SER D4008 " (cutoff:3.500A) Processing helix chain 'D' and resid 4013 through 4028 removed outlier: 4.503A pdb=" N LEU D4024 " --> pdb=" O MET D4020 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N LYS D4025 " --> pdb=" O PHE D4021 " (cutoff:3.500A) Processing helix chain 'D' and resid 4031 through 4038 removed outlier: 4.088A pdb=" N GLU D4035 " --> pdb=" O ASP D4031 " (cutoff:3.500A) removed outlier: 5.086A pdb=" N TYR D4036 " --> pdb=" O THR D4032 " (cutoff:3.500A) removed outlier: 3.977A pdb=" N ASP D4037 " --> pdb=" O PHE D4033 " (cutoff:3.500A) Proline residue: D4038 - end of helix No H-bonds generated for 'chain 'D' and resid 4031 through 4038' Processing helix chain 'D' and resid 4045 through 4057 Processing helix chain 'D' and resid 4060 through 4071 Processing helix chain 'D' and resid 4086 through 4110 Proline residue: D4091 - end of helix Processing helix chain 'D' and resid 4113 through 4124 removed outlier: 3.737A pdb=" N ALA D4123 " --> pdb=" O PHE D4119 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N GLU D4124 " --> pdb=" O LEU D4120 " (cutoff:3.500A) Processing helix chain 'D' and resid 4125 through 4132 removed outlier: 3.547A pdb=" N GLN D4131 " --> pdb=" O LEU D4127 " (cutoff:3.500A) Proline residue: D4132 - end of helix Processing helix chain 'D' and resid 4154 through 4163 removed outlier: 3.553A pdb=" N ARG D4158 " --> pdb=" O SER D4154 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N LYS D4163 " --> pdb=" O THR D4159 " (cutoff:3.500A) Processing helix chain 'D' and resid 4164 through 4180 Processing helix chain 'D' and resid 4182 through 4207 removed outlier: 4.497A pdb=" N MET D4187 " --> pdb=" O GLU D4183 " (cutoff:3.500A) removed outlier: 4.892A pdb=" N GLU D4188 " --> pdb=" O LYS D4184 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N ILE D4207 " --> pdb=" O LEU D4203 " (cutoff:3.500A) Processing helix chain 'D' and resid 4486 through 4500 removed outlier: 3.888A pdb=" N GLN D4490 " --> pdb=" O ILE D4486 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N PHE D4500 " --> pdb=" O PHE D4496 " (cutoff:3.500A) Processing helix chain 'D' and resid 4501 through 4519 removed outlier: 3.518A pdb=" N ILE D4517 " --> pdb=" O ALA D4513 " (cutoff:3.500A) removed outlier: 4.790A pdb=" N LEU D4519 " --> pdb=" O ASN D4515 " (cutoff:3.500A) Processing helix chain 'D' and resid 4570 through 4614 removed outlier: 3.997A pdb=" N LYS D4595 " --> pdb=" O TYR D4591 " (cutoff:3.500A) removed outlier: 5.283A pdb=" N VAL D4596 " --> pdb=" O TYR D4592 " (cutoff:3.500A) Proline residue: D4597 - end of helix Processing helix chain 'D' and resid 4626 through 4639 removed outlier: 3.973A pdb=" N ASP D4632 " --> pdb=" O LYS D4628 " (cutoff:3.500A) removed outlier: 4.818A pdb=" N ARG D4633 " --> pdb=" O GLY D4629 " (cutoff:3.500A) removed outlier: 5.440A pdb=" N LEU D4634 " --> pdb=" O GLN D4630 " (cutoff:3.500A) removed outlier: 5.315A pdb=" N VAL D4635 " --> pdb=" O TRP D4631 " (cutoff:3.500A) removed outlier: 4.340A pdb=" N ILE D4636 " --> pdb=" O ASP D4632 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N ASN D4637 " --> pdb=" O ARG D4633 " (cutoff:3.500A) removed outlier: 4.979A pdb=" N THR D4638 " --> pdb=" O LEU D4634 " (cutoff:3.500A) removed outlier: 5.372A pdb=" N GLN D4639 " --> pdb=" O VAL D4635 " (cutoff:3.500A) Processing helix chain 'D' and resid 4647 through 4663 removed outlier: 4.800A pdb=" N LYS D4651 " --> pdb=" O ASP D4647 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ARG D4652 " --> pdb=" O LYS D4648 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N GLY D4659 " --> pdb=" O MET D4655 " (cutoff:3.500A) removed outlier: 5.310A pdb=" N GLU D4660 " --> pdb=" O ASP D4656 " (cutoff:3.500A) removed outlier: 5.517A pdb=" N PHE D4661 " --> pdb=" O LYS D4657 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N TYR D4662 " --> pdb=" O TYR D4658 " (cutoff:3.500A) Processing helix chain 'D' and resid 4664 through 4672 Processing helix chain 'D' and resid 4704 through 4717 removed outlier: 3.561A pdb=" N THR D4716 " --> pdb=" O GLY D4712 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N ASP D4717 " --> pdb=" O VAL D4713 " (cutoff:3.500A) Processing helix chain 'D' and resid 4718 through 4737 Processing helix chain 'D' and resid 4744 through 4750 removed outlier: 5.484A pdb=" N ALA D4748 " --> pdb=" O LEU D4744 " (cutoff:3.500A) removed outlier: 4.631A pdb=" N MET D4749 " --> pdb=" O LEU D4745 " (cutoff:3.500A) removed outlier: 4.241A pdb=" N GLY D4750 " --> pdb=" O ASP D4746 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4744 through 4750' Processing helix chain 'D' and resid 4752 through 4766 removed outlier: 4.210A pdb=" N ASN D4764 " --> pdb=" O SER D4760 " (cutoff:3.500A) removed outlier: 4.123A pdb=" N GLY D4765 " --> pdb=" O VAL D4761 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N LYS D4766 " --> pdb=" O THR D4762 " (cutoff:3.500A) Processing helix chain 'D' and resid 4767 through 4790 removed outlier: 3.964A pdb=" N ALA D4786 " --> pdb=" O TYR D4782 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE D4787 " --> pdb=" O THR D4783 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ASN D4788 " --> pdb=" O VAL D4784 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N PHE D4789 " --> pdb=" O VAL D4785 " (cutoff:3.500A) removed outlier: 4.505A pdb=" N PHE D4790 " --> pdb=" O ALA D4786 " (cutoff:3.500A) Processing helix chain 'D' and resid 4809 through 4824 removed outlier: 3.795A pdb=" N CYS D4813 " --> pdb=" O ASP D4809 " (cutoff:3.500A) Processing helix chain 'D' and resid 4828 through 4833 removed outlier: 4.225A pdb=" N ILE D4832 " --> pdb=" O ILE D4828 " (cutoff:3.500A) removed outlier: 6.128A pdb=" N GLU D4833 " --> pdb=" O GLY D4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4828 through 4833' Processing helix chain 'D' and resid 4838 through 4887 removed outlier: 4.226A pdb=" N ILE D4842 " --> pdb=" O ASP D4838 " (cutoff:3.500A) removed outlier: 5.038A pdb=" N TYR D4843 " --> pdb=" O GLU D4839 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N LEU D4860 " --> pdb=" O ILE D4856 " (cutoff:3.500A) removed outlier: 3.803A pdb=" N GLU D4886 " --> pdb=" O LYS D4882 " (cutoff:3.500A) Processing helix chain 'D' and resid 4895 through 4903 removed outlier: 4.365A pdb=" N PHE D4899 " --> pdb=" O GLY D4895 " (cutoff:3.500A) removed outlier: 4.906A pdb=" N ASP D4900 " --> pdb=" O ASN D4896 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N THR D4901 " --> pdb=" O ASP D4897 " (cutoff:3.500A) removed outlier: 4.746A pdb=" N VAL D4902 " --> pdb=" O TYR D4898 " (cutoff:3.500A) Proline residue: D4903 - end of helix No H-bonds generated for 'chain 'D' and resid 4895 through 4903' Processing helix chain 'D' and resid 4904 through 4912 Processing helix chain 'D' and resid 4915 through 4930 removed outlier: 4.280A pdb=" N TYR D4919 " --> pdb=" O ASN D4915 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N LEU D4920 " --> pdb=" O LEU D4916 " (cutoff:3.500A) removed outlier: 4.650A pdb=" N ASP D4930 " --> pdb=" O LEU D4926 " (cutoff:3.500A) Processing helix chain 'D' and resid 4935 through 4948 Processing helix chain 'D' and resid 4958 through 4964 removed outlier: 3.746A pdb=" N TYR D4963 " --> pdb=" O PHE D4959 " (cutoff:3.500A) Processing helix chain 'D' and resid 982 through 987 removed outlier: 4.821A pdb=" N ILE D 986 " --> pdb=" O LEU D 983 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LYS D 987 " --> pdb=" O SER D 984 " (cutoff:3.500A) Processing helix chain 'D' and resid 4738 through 4743 removed outlier: 4.393A pdb=" N ALA D4741 " --> pdb=" O PHE D4738 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N ALA D4742 " --> pdb=" O PHE D4739 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N HIS D4743 " --> pdb=" O PHE D4740 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4738 through 4743' Processing helix chain 'D' and resid 54 through 59 Proline residue: D 59 - end of helix No H-bonds generated for 'chain 'D' and resid 54 through 59' Processing helix chain 'D' and resid 4615 through 4620 Processing helix chain 'F' and resid 61 through 66 removed outlier: 5.190A pdb=" N CYS F 65 " --> pdb=" O ASP F 61 " (cutoff:3.500A) Processing helix chain 'F' and resid 74 through 85 removed outlier: 5.005A pdb=" N THR F 85 " --> pdb=" O MET F 81 " (cutoff:3.500A) Processing helix chain 'F' and resid 266 through 271 removed outlier: 3.677A pdb=" N HIS F 270 " --> pdb=" O ALA F 266 " (cutoff:3.500A) removed outlier: 4.692A pdb=" N ALA F 271 " --> pdb=" O VAL F 267 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 266 through 271' Processing helix chain 'F' and resid 409 through 439 removed outlier: 3.587A pdb=" N VAL F 418 " --> pdb=" O ARG F 414 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ARG F 420 " --> pdb=" O ALA F 416 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N LEU F 436 " --> pdb=" O GLY F 432 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N LYS F 438 " --> pdb=" O ASP F 434 " (cutoff:3.500A) Processing helix chain 'F' and resid 449 through 464 removed outlier: 3.725A pdb=" N SER F 453 " --> pdb=" O ILE F 449 " (cutoff:3.500A) Processing helix chain 'F' and resid 471 through 493 removed outlier: 3.781A pdb=" N PHE F 489 " --> pdb=" O ARG F 485 " (cutoff:3.500A) Processing helix chain 'F' and resid 494 through 507 removed outlier: 5.214A pdb=" N VAL F 507 " --> pdb=" O ASP F 503 " (cutoff:3.500A) Processing helix chain 'F' and resid 519 through 542 removed outlier: 4.015A pdb=" N GLY F 523 " --> pdb=" O GLY F 519 " (cutoff:3.500A) removed outlier: 4.969A pdb=" N SER F 525 " --> pdb=" O GLU F 521 " (cutoff:3.500A) removed outlier: 5.077A pdb=" N TRP F 526 " --> pdb=" O ALA F 522 " (cutoff:3.500A) removed outlier: 5.256A pdb=" N LYS F 527 " --> pdb=" O GLY F 523 " (cutoff:3.500A) removed outlier: 5.569A pdb=" N SER F 528 " --> pdb=" O GLU F 524 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N ILE F 541 " --> pdb=" O LEU F 537 " (cutoff:3.500A) removed outlier: 4.373A pdb=" N ARG F 542 " --> pdb=" O ALA F 538 " (cutoff:3.500A) Processing helix chain 'F' and resid 544 through 552 removed outlier: 4.441A pdb=" N CYS F 548 " --> pdb=" O ASN F 544 " (cutoff:3.500A) removed outlier: 4.423A pdb=" N SER F 552 " --> pdb=" O CYS F 548 " (cutoff:3.500A) Processing helix chain 'F' and resid 553 through 563 removed outlier: 4.487A pdb=" N TRP F 557 " --> pdb=" O GLY F 553 " (cutoff:3.500A) removed outlier: 4.088A pdb=" N GLU F 563 " --> pdb=" O ILE F 559 " (cutoff:3.500A) Processing helix chain 'F' and resid 567 through 582 removed outlier: 3.644A pdb=" N ILE F 571 " --> pdb=" O ALA F 567 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N GLU F 581 " --> pdb=" O CYS F 577 " (cutoff:3.500A) Processing helix chain 'F' and resid 583 through 589 removed outlier: 3.754A pdb=" N ASN F 587 " --> pdb=" O PRO F 583 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N ILE F 588 " --> pdb=" O GLU F 584 " (cutoff:3.500A) Processing helix chain 'F' and resid 590 through 605 removed outlier: 3.817A pdb=" N ILE F 594 " --> pdb=" O LYS F 590 " (cutoff:3.500A) Processing helix chain 'F' and resid 607 through 620 removed outlier: 3.695A pdb=" N LEU F 611 " --> pdb=" O ASN F 607 " (cutoff:3.500A) removed outlier: 4.915A pdb=" N CYS F 620 " --> pdb=" O SER F 616 " (cutoff:3.500A) Processing helix chain 'F' and resid 625 through 636 Processing helix chain 'F' and resid 821 through 827 removed outlier: 4.357A pdb=" N ALA F 825 " --> pdb=" O PRO F 821 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N VAL F 826 " --> pdb=" O CYS F 822 " (cutoff:3.500A) removed outlier: 4.399A pdb=" N LEU F 827 " --> pdb=" O TYR F 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 821 through 827' Processing helix chain 'F' and resid 876 through 901 removed outlier: 3.816A pdb=" N ARG F 880 " --> pdb=" O PRO F 876 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N ILE F 881 " --> pdb=" O HIS F 877 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N GLU F 891 " --> pdb=" O GLU F 887 " (cutoff:3.500A) removed outlier: 3.845A pdb=" N LEU F 892 " --> pdb=" O ASN F 888 " (cutoff:3.500A) Processing helix chain 'F' and resid 920 through 925 Proline residue: F 925 - end of helix Processing helix chain 'F' and resid 929 through 946 removed outlier: 4.268A pdb=" N MET F 935 " --> pdb=" O TYR F 931 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N LEU F 940 " --> pdb=" O SER F 936 " (cutoff:3.500A) Processing helix chain 'F' and resid 989 through 1014 removed outlier: 3.709A pdb=" N ASP F 997 " --> pdb=" O GLU F 993 " (cutoff:3.500A) removed outlier: 5.260A pdb=" N ARG F1013 " --> pdb=" O ARG F1009 " (cutoff:3.500A) removed outlier: 4.688A pdb=" N GLN F1014 " --> pdb=" O ASP F1010 " (cutoff:3.500A) Processing helix chain 'F' and resid 1042 through 1059 removed outlier: 4.881A pdb=" N ASN F1046 " --> pdb=" O THR F1042 " (cutoff:3.500A) Processing helix chain 'F' and resid 1220 through 1225 removed outlier: 5.887A pdb=" N LYS F1225 " --> pdb=" O VAL F1221 " (cutoff:3.500A) Processing helix chain 'F' and resid 1229 through 1235 removed outlier: 4.985A pdb=" N GLN F1233 " --> pdb=" O ILE F1229 " (cutoff:3.500A) removed outlier: 6.422A pdb=" N GLU F1234 " --> pdb=" O CYS F1230 " (cutoff:3.500A) Processing helix chain 'F' and resid 1238 through 1244 removed outlier: 4.716A pdb=" N ASN F1242 " --> pdb=" O PRO F1238 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N THR F1243 " --> pdb=" O PHE F1239 " (cutoff:3.500A) removed outlier: 4.727A pdb=" N ASN F1244 " --> pdb=" O ALA F1240 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 1238 through 1244' Processing helix chain 'F' and resid 1570 through 1576 removed outlier: 4.182A pdb=" N GLU F1574 " --> pdb=" O LEU F1570 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N LYS F1576 " --> pdb=" O LYS F1572 " (cutoff:3.500A) Processing helix chain 'F' and resid 1640 through 1648 removed outlier: 3.948A pdb=" N LEU F1644 " --> pdb=" O ASP F1640 " (cutoff:3.500A) removed outlier: 4.388A pdb=" N THR F1645 " --> pdb=" O ILE F1641 " (cutoff:3.500A) removed outlier: 6.099A pdb=" N GLU F1646 " --> pdb=" O LEU F1642 " (cutoff:3.500A) removed outlier: 4.593A pdb=" N GLN F1647 " --> pdb=" O GLU F1643 " (cutoff:3.500A) removed outlier: 4.615A pdb=" N GLU F1648 " --> pdb=" O LEU F1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 1640 through 1648' Processing helix chain 'F' and resid 1649 through 1666 removed outlier: 4.291A pdb=" N ALA F1666 " --> pdb=" O SER F1662 " (cutoff:3.500A) Processing helix chain 'F' and resid 1669 through 1680 Processing helix chain 'F' and resid 1681 through 1692 removed outlier: 3.661A pdb=" N LEU F1685 " --> pdb=" O ASP F1681 " (cutoff:3.500A) removed outlier: 4.098A pdb=" N GLU F1690 " --> pdb=" O LEU F1686 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N ASN F1691 " --> pdb=" O TYR F1687 " (cutoff:3.500A) removed outlier: 5.801A pdb=" N LYS F1692 " --> pdb=" O ALA F1688 " (cutoff:3.500A) Processing helix chain 'F' and resid 1695 through 1710 removed outlier: 3.996A pdb=" N ILE F1707 " --> pdb=" O TYR F1703 " (cutoff:3.500A) Processing helix chain 'F' and resid 1711 through 1723 removed outlier: 5.063A pdb=" N ASN F1723 " --> pdb=" O LEU F1719 " (cutoff:3.500A) Processing helix chain 'F' and resid 1730 through 1736 removed outlier: 3.931A pdb=" N ILE F1736 " --> pdb=" O GLU F1732 " (cutoff:3.500A) Processing helix chain 'F' and resid 1784 through 1803 removed outlier: 3.680A pdb=" N ALA F1789 " --> pdb=" O ASP F1785 " (cutoff:3.500A) Processing helix chain 'F' and resid 1813 through 1832 Proline residue: F1820 - end of helix removed outlier: 4.251A pdb=" N GLY F1832 " --> pdb=" O LEU F1828 " (cutoff:3.500A) Processing helix chain 'F' and resid 1835 through 1847 Processing helix chain 'F' and resid 1893 through 1898 removed outlier: 3.545A pdb=" N MET F1897 " --> pdb=" O GLY F1893 " (cutoff:3.500A) removed outlier: 5.671A pdb=" N LYS F1898 " --> pdb=" O LEU F1894 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 1893 through 1898' Processing helix chain 'F' and resid 1901 through 1948 removed outlier: 4.481A pdb=" N LEU F1909 " --> pdb=" O LEU F1905 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N LEU F1910 " --> pdb=" O GLN F1906 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N VAL F1948 " --> pdb=" O ARG F1944 " (cutoff:3.500A) Processing helix chain 'F' and resid 2000 through 2012 removed outlier: 3.749A pdb=" N LEU F2004 " --> pdb=" O PHE F2000 " (cutoff:3.500A) Processing helix chain 'F' and resid 2024 through 2039 removed outlier: 3.658A pdb=" N TYR F2039 " --> pdb=" O GLU F2035 " (cutoff:3.500A) Processing helix chain 'F' and resid 2058 through 2073 removed outlier: 3.546A pdb=" N VAL F2068 " --> pdb=" O SER F2064 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N GLU F2073 " --> pdb=" O ARG F2069 " (cutoff:3.500A) Processing helix chain 'F' and resid 2078 through 2095 removed outlier: 3.743A pdb=" N VAL F2082 " --> pdb=" O ASP F2078 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N LEU F2088 " --> pdb=" O ALA F2084 " (cutoff:3.500A) Processing helix chain 'F' and resid 2096 through 2106 removed outlier: 3.899A pdb=" N ALA F2102 " --> pdb=" O GLY F2098 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N LEU F2103 " --> pdb=" O LEU F2099 " (cutoff:3.500A) Proline residue: F2104 - end of helix Processing helix chain 'F' and resid 2113 through 2134 removed outlier: 5.148A pdb=" N ARG F2134 " --> pdb=" O LEU F2130 " (cutoff:3.500A) Processing helix chain 'F' and resid 2136 through 2153 removed outlier: 4.195A pdb=" N GLU F2140 " --> pdb=" O GLY F2136 " (cutoff:3.500A) removed outlier: 6.009A pdb=" N LYS F2141 " --> pdb=" O LYS F2137 " (cutoff:3.500A) removed outlier: 5.307A pdb=" N LEU F2142 " --> pdb=" O GLU F2138 " (cutoff:3.500A) Processing helix chain 'F' and resid 2154 through 2159 removed outlier: 3.719A pdb=" N GLN F2158 " --> pdb=" O LYS F2154 " (cutoff:3.500A) removed outlier: 5.617A pdb=" N HIS F2159 " --> pdb=" O VAL F2155 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 2154 through 2159' Processing helix chain 'F' and resid 2160 through 2167 removed outlier: 3.956A pdb=" N GLY F2167 " --> pdb=" O MET F2163 " (cutoff:3.500A) Processing helix chain 'F' and resid 2168 through 2181 removed outlier: 4.087A pdb=" N GLY F2181 " --> pdb=" O VAL F2177 " (cutoff:3.500A) Processing helix chain 'F' and resid 2192 through 2208 removed outlier: 3.679A pdb=" N PHE F2200 " --> pdb=" O ASN F2196 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N TYR F2203 " --> pdb=" O ARG F2199 " (cutoff:3.500A) removed outlier: 3.897A pdb=" N ILE F2207 " --> pdb=" O TYR F2203 " (cutoff:3.500A) removed outlier: 4.895A pdb=" N SER F2208 " --> pdb=" O PHE F2204 " (cutoff:3.500A) Processing helix chain 'F' and resid 2209 through 2219 removed outlier: 3.555A pdb=" N MET F2215 " --> pdb=" O ASN F2211 " (cutoff:3.500A) removed outlier: 3.733A pdb=" N ASP F2217 " --> pdb=" O LYS F2213 " (cutoff:3.500A) removed outlier: 4.621A pdb=" N HIS F2218 " --> pdb=" O ALA F2214 " (cutoff:3.500A) removed outlier: 4.521A pdb=" N LEU F2219 " --> pdb=" O MET F2215 " (cutoff:3.500A) Processing helix chain 'F' and resid 2220 through 2226 removed outlier: 3.954A pdb=" N GLU F2224 " --> pdb=" O SER F2220 " (cutoff:3.500A) Processing helix chain 'F' and resid 2239 through 2250 removed outlier: 3.978A pdb=" N VAL F2248 " --> pdb=" O ALA F2244 " (cutoff:3.500A) removed outlier: 5.629A pdb=" N ASP F2250 " --> pdb=" O ALA F2246 " (cutoff:3.500A) Processing helix chain 'F' and resid 2251 through 2258 Processing helix chain 'F' and resid 2259 through 2271 removed outlier: 4.349A pdb=" N LEU F2263 " --> pdb=" O ARG F2259 " (cutoff:3.500A) removed outlier: 4.276A pdb=" N ALA F2271 " --> pdb=" O VAL F2267 " (cutoff:3.500A) Processing helix chain 'F' and resid 2294 through 2309 removed outlier: 4.658A pdb=" N ARG F2298 " --> pdb=" O VAL F2294 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N TYR F2299 " --> pdb=" O GLU F2295 " (cutoff:3.500A) removed outlier: 4.665A pdb=" N CYS F2309 " --> pdb=" O PHE F2305 " (cutoff:3.500A) Processing helix chain 'F' and resid 2314 through 2329 removed outlier: 4.185A pdb=" N ALA F2318 " --> pdb=" O VAL F2314 " (cutoff:3.500A) Proline residue: F2329 - end of helix Processing helix chain 'F' and resid 2343 through 2351 removed outlier: 3.779A pdb=" N GLU F2349 " --> pdb=" O LEU F2345 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N GLU F2350 " --> pdb=" O ALA F2346 " (cutoff:3.500A) removed outlier: 4.324A pdb=" N ALA F2351 " --> pdb=" O ALA F2347 " (cutoff:3.500A) Processing helix chain 'F' and resid 2386 through 2403 removed outlier: 3.919A pdb=" N MET F2390 " --> pdb=" O GLY F2386 " (cutoff:3.500A) removed outlier: 4.813A pdb=" N CYS F2403 " --> pdb=" O LEU F2399 " (cutoff:3.500A) Processing helix chain 'F' and resid 2417 through 2427 removed outlier: 3.936A pdb=" N ILE F2423 " --> pdb=" O ARG F2419 " (cutoff:3.500A) Processing helix chain 'F' and resid 2432 through 2442 removed outlier: 4.028A pdb=" N PHE F2441 " --> pdb=" O ILE F2437 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N GLN F2442 " --> pdb=" O SER F2438 " (cutoff:3.500A) Processing helix chain 'F' and resid 2461 through 2476 removed outlier: 4.104A pdb=" N HIS F2465 " --> pdb=" O PHE F2461 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N LYS F2466 " --> pdb=" O CYS F2462 " (cutoff:3.500A) Processing helix chain 'F' and resid 2481 through 2488 removed outlier: 4.063A pdb=" N LEU F2488 " --> pdb=" O PHE F2484 " (cutoff:3.500A) Processing helix chain 'F' and resid 2492 through 2500 removed outlier: 4.309A pdb=" N ASP F2496 " --> pdb=" O GLY F2492 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N ALA F2500 " --> pdb=" O ASP F2496 " (cutoff:3.500A) Processing helix chain 'F' and resid 2514 through 2529 removed outlier: 5.190A pdb=" N ASN F2518 " --> pdb=" O ALA F2514 " (cutoff:3.500A) removed outlier: 4.100A pdb=" N ARG F2519 " --> pdb=" O LEU F2515 " (cutoff:3.500A) removed outlier: 3.613A pdb=" N CYS F2522 " --> pdb=" O ASN F2518 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N LEU F2526 " --> pdb=" O CYS F2522 " (cutoff:3.500A) Proline residue: F2527 - end of helix Processing helix chain 'F' and resid 2535 through 2553 Processing helix chain 'F' and resid 2558 through 2576 removed outlier: 3.539A pdb=" N LYS F2564 " --> pdb=" O CYS F2560 " (cutoff:3.500A) removed outlier: 4.355A pdb=" N SER F2576 " --> pdb=" O VAL F2572 " (cutoff:3.500A) Processing helix chain 'F' and resid 2582 through 2601 removed outlier: 3.723A pdb=" N MET F2586 " --> pdb=" O ARG F2582 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N ARG F2592 " --> pdb=" O HIS F2588 " (cutoff:3.500A) Proline residue: F2598 - end of helix Processing helix chain 'F' and resid 2605 through 2627 removed outlier: 4.142A pdb=" N ARG F2617 " --> pdb=" O ASN F2613 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N CYS F2618 " --> pdb=" O HIS F2614 " (cutoff:3.500A) Proline residue: F2625 - end of helix Processing helix chain 'F' and resid 2634 through 2653 removed outlier: 3.995A pdb=" N LEU F2653 " --> pdb=" O ILE F2649 " (cutoff:3.500A) Processing helix chain 'F' and resid 2658 through 2679 Proline residue: F2668 - end of helix Proline residue: F2678 - end of helix Processing helix chain 'F' and resid 2715 through 2741 removed outlier: 3.731A pdb=" N PHE F2721 " --> pdb=" O LYS F2717 " (cutoff:3.500A) removed outlier: 4.009A pdb=" N LYS F2724 " --> pdb=" O TYR F2720 " (cutoff:3.500A) removed outlier: 3.991A pdb=" N GLU F2727 " --> pdb=" O ASN F2723 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ASN F2740 " --> pdb=" O ASP F2736 " (cutoff:3.500A) Processing helix chain 'F' and resid 2760 through 2765 removed outlier: 3.927A pdb=" N LEU F2764 " --> pdb=" O PRO F2760 " (cutoff:3.500A) removed outlier: 6.016A pdb=" N SER F2765 " --> pdb=" O TYR F2761 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 2760 through 2765' Processing helix chain 'F' and resid 2768 through 2785 removed outlier: 4.696A pdb=" N TYR F2772 " --> pdb=" O GLU F2768 " (cutoff:3.500A) Proline residue: F2775 - end of helix Processing helix chain 'F' and resid 2835 through 2865 removed outlier: 3.708A pdb=" N SER F2863 " --> pdb=" O LEU F2859 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N LYS F2864 " --> pdb=" O GLU F2860 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N GLY F2865 " --> pdb=" O LEU F2861 " (cutoff:3.500A) Processing helix chain 'F' and resid 2882 through 2899 removed outlier: 4.542A pdb=" N ASP F2886 " --> pdb=" O GLU F2882 " (cutoff:3.500A) removed outlier: 4.814A pdb=" N LYS F2889 " --> pdb=" O LYS F2885 " (cutoff:3.500A) removed outlier: 4.309A pdb=" N ILE F2893 " --> pdb=" O LYS F2889 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N LEU F2894 " --> pdb=" O ALA F2890 " (cutoff:3.500A) Processing helix chain 'F' and resid 2982 through 3003 removed outlier: 4.341A pdb=" N ALA F2986 " --> pdb=" O TYR F2982 " (cutoff:3.500A) Proline residue: F2990 - end of helix Processing helix chain 'F' and resid 3009 through 3028 Processing helix chain 'F' and resid 3034 through 3053 removed outlier: 3.684A pdb=" N GLY F3038 " --> pdb=" O LEU F3034 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N GLU F3052 " --> pdb=" O LYS F3048 " (cutoff:3.500A) removed outlier: 5.053A pdb=" N SER F3053 " --> pdb=" O THR F3049 " (cutoff:3.500A) Processing helix chain 'F' and resid 3061 through 3082 removed outlier: 5.307A pdb=" N ALA F3065 " --> pdb=" O PHE F3061 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N LEU F3069 " --> pdb=" O ALA F3065 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N GLU F3070 " --> pdb=" O ALA F3066 " (cutoff:3.500A) removed outlier: 4.115A pdb=" N THR F3082 " --> pdb=" O GLN F3078 " (cutoff:3.500A) Processing helix chain 'F' and resid 3098 through 3117 removed outlier: 4.378A pdb=" N LEU F3102 " --> pdb=" O THR F3098 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N LEU F3103 " --> pdb=" O THR F3099 " (cutoff:3.500A) Proline residue: F3104 - end of helix removed outlier: 4.230A pdb=" N GLN F3117 " --> pdb=" O ILE F3113 " (cutoff:3.500A) Processing helix chain 'F' and resid 3125 through 3144 removed outlier: 4.369A pdb=" N SER F3144 " --> pdb=" O ALA F3140 " (cutoff:3.500A) Processing helix chain 'F' and resid 3150 through 3164 Processing helix chain 'F' and resid 3171 through 3183 removed outlier: 3.893A pdb=" N TYR F3182 " --> pdb=" O LYS F3178 " (cutoff:3.500A) removed outlier: 4.218A pdb=" N SER F3183 " --> pdb=" O HIS F3179 " (cutoff:3.500A) Processing helix chain 'F' and resid 3613 through 3629 removed outlier: 4.116A pdb=" N ALA F3617 " --> pdb=" O PRO F3613 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ASN F3619 " --> pdb=" O HIS F3615 " (cutoff:3.500A) Processing helix chain 'F' and resid 3637 through 3647 removed outlier: 4.632A pdb=" N LYS F3647 " --> pdb=" O GLU F3643 " (cutoff:3.500A) Processing helix chain 'F' and resid 3663 through 3678 removed outlier: 3.546A pdb=" N THR F3678 " --> pdb=" O ARG F3674 " (cutoff:3.500A) Processing helix chain 'F' and resid 3686 through 3700 removed outlier: 4.431A pdb=" N CYS F3700 " --> pdb=" O MET F3696 " (cutoff:3.500A) Processing helix chain 'F' and resid 3714 through 3736 removed outlier: 3.590A pdb=" N ASP F3734 " --> pdb=" O ALA F3730 " (cutoff:3.500A) removed outlier: 4.905A pdb=" N ARG F3735 " --> pdb=" O ARG F3731 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLY F3736 " --> pdb=" O LEU F3732 " (cutoff:3.500A) Processing helix chain 'F' and resid 3737 through 3749 removed outlier: 3.876A pdb=" N VAL F3741 " --> pdb=" O ALA F3737 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N LYS F3749 " --> pdb=" O ILE F3745 " (cutoff:3.500A) Processing helix chain 'F' and resid 3753 through 3768 removed outlier: 3.534A pdb=" N ALA F3757 " --> pdb=" O GLY F3753 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA F3765 " --> pdb=" O LYS F3761 " (cutoff:3.500A) Processing helix chain 'F' and resid 3771 through 3786 removed outlier: 3.909A pdb=" N LYS F3785 " --> pdb=" O TYR F3781 " (cutoff:3.500A) removed outlier: 4.873A pdb=" N LYS F3786 " --> pdb=" O LEU F3782 " (cutoff:3.500A) Processing helix chain 'F' and resid 3787 through 3801 removed outlier: 4.074A pdb=" N PHE F3791 " --> pdb=" O ASP F3787 " (cutoff:3.500A) removed outlier: 4.259A pdb=" N SER F3800 " --> pdb=" O GLY F3796 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N CYS F3801 " --> pdb=" O LEU F3797 " (cutoff:3.500A) Processing helix chain 'F' and resid 3805 through 3816 removed outlier: 4.299A pdb=" N PHE F3809 " --> pdb=" O ASP F3805 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N ALA F3815 " --> pdb=" O ARG F3811 " (cutoff:3.500A) removed outlier: 4.719A pdb=" N GLU F3816 " --> pdb=" O GLN F3812 " (cutoff:3.500A) Processing helix chain 'F' and resid 3834 through 3849 removed outlier: 4.293A pdb=" N CYS F3848 " --> pdb=" O LEU F3844 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N GLU F3849 " --> pdb=" O GLN F3845 " (cutoff:3.500A) Processing helix chain 'F' and resid 3852 through 3861 Processing helix chain 'F' and resid 3870 through 3894 removed outlier: 3.768A pdb=" N SER F3874 " --> pdb=" O ASN F3870 " (cutoff:3.500A) Processing helix chain 'F' and resid 3900 through 3926 removed outlier: 3.608A pdb=" N ASN F3919 " --> pdb=" O LYS F3915 " (cutoff:3.500A) Processing helix chain 'F' and resid 3929 through 3940 removed outlier: 5.230A pdb=" N ARG F3940 " --> pdb=" O LEU F3936 " (cutoff:3.500A) Processing helix chain 'F' and resid 3941 through 3960 removed outlier: 3.605A pdb=" N HIS F3954 " --> pdb=" O HIS F3950 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N MET F3957 " --> pdb=" O ALA F3953 " (cutoff:3.500A) removed outlier: 4.452A pdb=" N LYS F3958 " --> pdb=" O HIS F3954 " (cutoff:3.500A) Processing helix chain 'F' and resid 3965 through 3988 removed outlier: 3.710A pdb=" N GLU F3988 " --> pdb=" O LEU F3984 " (cutoff:3.500A) Processing helix chain 'F' and resid 3994 through 4012 removed outlier: 3.512A pdb=" N SER F4008 " --> pdb=" O LEU F4004 " (cutoff:3.500A) removed outlier: 5.472A pdb=" N ASN F4009 " --> pdb=" O VAL F4005 " (cutoff:3.500A) removed outlier: 7.143A pdb=" N ASN F4010 " --> pdb=" O GLU F4006 " (cutoff:3.500A) removed outlier: 4.838A pdb=" N VAL F4011 " --> pdb=" O SER F4007 " (cutoff:3.500A) removed outlier: 6.480A pdb=" N GLU F4012 " --> pdb=" O SER F4008 " (cutoff:3.500A) Processing helix chain 'F' and resid 4013 through 4028 removed outlier: 4.503A pdb=" N LEU F4024 " --> pdb=" O MET F4020 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N LYS F4025 " --> pdb=" O PHE F4021 " (cutoff:3.500A) Processing helix chain 'F' and resid 4031 through 4038 removed outlier: 4.087A pdb=" N GLU F4035 " --> pdb=" O ASP F4031 " (cutoff:3.500A) removed outlier: 5.086A pdb=" N TYR F4036 " --> pdb=" O THR F4032 " (cutoff:3.500A) removed outlier: 3.979A pdb=" N ASP F4037 " --> pdb=" O PHE F4033 " (cutoff:3.500A) Proline residue: F4038 - end of helix No H-bonds generated for 'chain 'F' and resid 4031 through 4038' Processing helix chain 'F' and resid 4045 through 4057 Processing helix chain 'F' and resid 4060 through 4071 Processing helix chain 'F' and resid 4086 through 4110 Proline residue: F4091 - end of helix Processing helix chain 'F' and resid 4113 through 4124 removed outlier: 3.736A pdb=" N ALA F4123 " --> pdb=" O PHE F4119 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N GLU F4124 " --> pdb=" O LEU F4120 " (cutoff:3.500A) Processing helix chain 'F' and resid 4125 through 4132 removed outlier: 3.546A pdb=" N GLN F4131 " --> pdb=" O LEU F4127 " (cutoff:3.500A) Proline residue: F4132 - end of helix Processing helix chain 'F' and resid 4154 through 4163 removed outlier: 3.553A pdb=" N ARG F4158 " --> pdb=" O SER F4154 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N LYS F4163 " --> pdb=" O THR F4159 " (cutoff:3.500A) Processing helix chain 'F' and resid 4164 through 4180 Processing helix chain 'F' and resid 4182 through 4207 removed outlier: 4.496A pdb=" N MET F4187 " --> pdb=" O GLU F4183 " (cutoff:3.500A) removed outlier: 4.892A pdb=" N GLU F4188 " --> pdb=" O LYS F4184 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N ILE F4207 " --> pdb=" O LEU F4203 " (cutoff:3.500A) Processing helix chain 'F' and resid 4486 through 4500 removed outlier: 3.888A pdb=" N GLN F4490 " --> pdb=" O ILE F4486 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N PHE F4500 " --> pdb=" O PHE F4496 " (cutoff:3.500A) Processing helix chain 'F' and resid 4501 through 4519 removed outlier: 3.518A pdb=" N ILE F4517 " --> pdb=" O ALA F4513 " (cutoff:3.500A) removed outlier: 4.790A pdb=" N LEU F4519 " --> pdb=" O ASN F4515 " (cutoff:3.500A) Processing helix chain 'F' and resid 4570 through 4614 removed outlier: 3.997A pdb=" N LYS F4595 " --> pdb=" O TYR F4591 " (cutoff:3.500A) removed outlier: 5.284A pdb=" N VAL F4596 " --> pdb=" O TYR F4592 " (cutoff:3.500A) Proline residue: F4597 - end of helix Processing helix chain 'F' and resid 4626 through 4639 removed outlier: 3.973A pdb=" N ASP F4632 " --> pdb=" O LYS F4628 " (cutoff:3.500A) removed outlier: 4.818A pdb=" N ARG F4633 " --> pdb=" O GLY F4629 " (cutoff:3.500A) removed outlier: 5.440A pdb=" N LEU F4634 " --> pdb=" O GLN F4630 " (cutoff:3.500A) removed outlier: 5.315A pdb=" N VAL F4635 " --> pdb=" O TRP F4631 " (cutoff:3.500A) removed outlier: 4.340A pdb=" N ILE F4636 " --> pdb=" O ASP F4632 " (cutoff:3.500A) removed outlier: 4.572A pdb=" N ASN F4637 " --> pdb=" O ARG F4633 " (cutoff:3.500A) removed outlier: 4.979A pdb=" N THR F4638 " --> pdb=" O LEU F4634 " (cutoff:3.500A) removed outlier: 5.372A pdb=" N GLN F4639 " --> pdb=" O VAL F4635 " (cutoff:3.500A) Processing helix chain 'F' and resid 4647 through 4663 removed outlier: 4.800A pdb=" N LYS F4651 " --> pdb=" O ASP F4647 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ARG F4652 " --> pdb=" O LYS F4648 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N GLY F4659 " --> pdb=" O MET F4655 " (cutoff:3.500A) removed outlier: 5.310A pdb=" N GLU F4660 " --> pdb=" O ASP F4656 " (cutoff:3.500A) removed outlier: 5.517A pdb=" N PHE F4661 " --> pdb=" O LYS F4657 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N TYR F4662 " --> pdb=" O TYR F4658 " (cutoff:3.500A) Processing helix chain 'F' and resid 4664 through 4672 Processing helix chain 'F' and resid 4704 through 4717 removed outlier: 3.562A pdb=" N THR F4716 " --> pdb=" O GLY F4712 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N ASP F4717 " --> pdb=" O VAL F4713 " (cutoff:3.500A) Processing helix chain 'F' and resid 4718 through 4737 Processing helix chain 'F' and resid 4744 through 4750 removed outlier: 5.484A pdb=" N ALA F4748 " --> pdb=" O LEU F4744 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N MET F4749 " --> pdb=" O LEU F4745 " (cutoff:3.500A) removed outlier: 4.241A pdb=" N GLY F4750 " --> pdb=" O ASP F4746 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 4744 through 4750' Processing helix chain 'F' and resid 4752 through 4766 removed outlier: 4.211A pdb=" N ASN F4764 " --> pdb=" O SER F4760 " (cutoff:3.500A) removed outlier: 4.124A pdb=" N GLY F4765 " --> pdb=" O VAL F4761 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N LYS F4766 " --> pdb=" O THR F4762 " (cutoff:3.500A) Processing helix chain 'F' and resid 4767 through 4790 removed outlier: 3.964A pdb=" N ALA F4786 " --> pdb=" O TYR F4782 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE F4787 " --> pdb=" O THR F4783 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ASN F4788 " --> pdb=" O VAL F4784 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N PHE F4789 " --> pdb=" O VAL F4785 " (cutoff:3.500A) removed outlier: 4.505A pdb=" N PHE F4790 " --> pdb=" O ALA F4786 " (cutoff:3.500A) Processing helix chain 'F' and resid 4809 through 4824 removed outlier: 3.795A pdb=" N CYS F4813 " --> pdb=" O ASP F4809 " (cutoff:3.500A) Processing helix chain 'F' and resid 4828 through 4833 removed outlier: 4.225A pdb=" N ILE F4832 " --> pdb=" O ILE F4828 " (cutoff:3.500A) removed outlier: 6.128A pdb=" N GLU F4833 " --> pdb=" O GLY F4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 4828 through 4833' Processing helix chain 'F' and resid 4838 through 4887 removed outlier: 4.225A pdb=" N ILE F4842 " --> pdb=" O ASP F4838 " (cutoff:3.500A) removed outlier: 5.038A pdb=" N TYR F4843 " --> pdb=" O GLU F4839 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N LEU F4860 " --> pdb=" O ILE F4856 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N GLU F4886 " --> pdb=" O LYS F4882 " (cutoff:3.500A) Processing helix chain 'F' and resid 4895 through 4903 removed outlier: 4.365A pdb=" N PHE F4899 " --> pdb=" O GLY F4895 " (cutoff:3.500A) removed outlier: 4.906A pdb=" N ASP F4900 " --> pdb=" O ASN F4896 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N THR F4901 " --> pdb=" O ASP F4897 " (cutoff:3.500A) removed outlier: 4.746A pdb=" N VAL F4902 " --> pdb=" O TYR F4898 " (cutoff:3.500A) Proline residue: F4903 - end of helix No H-bonds generated for 'chain 'F' and resid 4895 through 4903' Processing helix chain 'F' and resid 4904 through 4912 Processing helix chain 'F' and resid 4915 through 4930 removed outlier: 4.280A pdb=" N TYR F4919 " --> pdb=" O ASN F4915 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N LEU F4920 " --> pdb=" O LEU F4916 " (cutoff:3.500A) removed outlier: 4.651A pdb=" N ASP F4930 " --> pdb=" O LEU F4926 " (cutoff:3.500A) Processing helix chain 'F' and resid 4935 through 4948 Processing helix chain 'F' and resid 4958 through 4964 removed outlier: 3.745A pdb=" N TYR F4963 " --> pdb=" O PHE F4959 " (cutoff:3.500A) Processing helix chain 'F' and resid 982 through 987 removed outlier: 4.821A pdb=" N ILE F 986 " --> pdb=" O LEU F 983 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LYS F 987 " --> pdb=" O SER F 984 " (cutoff:3.500A) Processing helix chain 'F' and resid 4738 through 4743 removed outlier: 4.395A pdb=" N ALA F4741 " --> pdb=" O PHE F4738 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N ALA F4742 " --> pdb=" O PHE F4739 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N HIS F4743 " --> pdb=" O PHE F4740 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 4738 through 4743' Processing helix chain 'F' and resid 54 through 59 Proline residue: F 59 - end of helix No H-bonds generated for 'chain 'F' and resid 54 through 59' Processing helix chain 'F' and resid 4615 through 4620 Processing helix chain 'H' and resid 61 through 66 removed outlier: 5.191A pdb=" N CYS H 65 " --> pdb=" O ASP H 61 " (cutoff:3.500A) Processing helix chain 'H' and resid 74 through 85 removed outlier: 5.004A pdb=" N THR H 85 " --> pdb=" O MET H 81 " (cutoff:3.500A) Processing helix chain 'H' and resid 266 through 271 removed outlier: 3.676A pdb=" N HIS H 270 " --> pdb=" O ALA H 266 " (cutoff:3.500A) removed outlier: 4.693A pdb=" N ALA H 271 " --> pdb=" O VAL H 267 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 266 through 271' Processing helix chain 'H' and resid 409 through 439 removed outlier: 3.587A pdb=" N VAL H 418 " --> pdb=" O ARG H 414 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N ARG H 420 " --> pdb=" O ALA H 416 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N LEU H 436 " --> pdb=" O GLY H 432 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N LYS H 438 " --> pdb=" O ASP H 434 " (cutoff:3.500A) Processing helix chain 'H' and resid 449 through 464 removed outlier: 3.725A pdb=" N SER H 453 " --> pdb=" O ILE H 449 " (cutoff:3.500A) Processing helix chain 'H' and resid 471 through 493 removed outlier: 3.781A pdb=" N PHE H 489 " --> pdb=" O ARG H 485 " (cutoff:3.500A) Processing helix chain 'H' and resid 494 through 507 removed outlier: 5.214A pdb=" N VAL H 507 " --> pdb=" O ASP H 503 " (cutoff:3.500A) Processing helix chain 'H' and resid 519 through 542 removed outlier: 4.015A pdb=" N GLY H 523 " --> pdb=" O GLY H 519 " (cutoff:3.500A) removed outlier: 4.969A pdb=" N SER H 525 " --> pdb=" O GLU H 521 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N TRP H 526 " --> pdb=" O ALA H 522 " (cutoff:3.500A) removed outlier: 5.256A pdb=" N LYS H 527 " --> pdb=" O GLY H 523 " (cutoff:3.500A) removed outlier: 5.569A pdb=" N SER H 528 " --> pdb=" O GLU H 524 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N ILE H 541 " --> pdb=" O LEU H 537 " (cutoff:3.500A) removed outlier: 4.373A pdb=" N ARG H 542 " --> pdb=" O ALA H 538 " (cutoff:3.500A) Processing helix chain 'H' and resid 544 through 552 removed outlier: 4.441A pdb=" N CYS H 548 " --> pdb=" O ASN H 544 " (cutoff:3.500A) removed outlier: 4.423A pdb=" N SER H 552 " --> pdb=" O CYS H 548 " (cutoff:3.500A) Processing helix chain 'H' and resid 553 through 563 removed outlier: 4.487A pdb=" N TRP H 557 " --> pdb=" O GLY H 553 " (cutoff:3.500A) removed outlier: 4.088A pdb=" N GLU H 563 " --> pdb=" O ILE H 559 " (cutoff:3.500A) Processing helix chain 'H' and resid 567 through 582 removed outlier: 3.643A pdb=" N ILE H 571 " --> pdb=" O ALA H 567 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N GLU H 581 " --> pdb=" O CYS H 577 " (cutoff:3.500A) Processing helix chain 'H' and resid 583 through 589 removed outlier: 3.754A pdb=" N ASN H 587 " --> pdb=" O PRO H 583 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N ILE H 588 " --> pdb=" O GLU H 584 " (cutoff:3.500A) Processing helix chain 'H' and resid 590 through 605 removed outlier: 3.817A pdb=" N ILE H 594 " --> pdb=" O LYS H 590 " (cutoff:3.500A) Processing helix chain 'H' and resid 607 through 620 removed outlier: 3.695A pdb=" N LEU H 611 " --> pdb=" O ASN H 607 " (cutoff:3.500A) removed outlier: 4.916A pdb=" N CYS H 620 " --> pdb=" O SER H 616 " (cutoff:3.500A) Processing helix chain 'H' and resid 625 through 636 Processing helix chain 'H' and resid 821 through 827 removed outlier: 4.356A pdb=" N ALA H 825 " --> pdb=" O PRO H 821 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N VAL H 826 " --> pdb=" O CYS H 822 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N LEU H 827 " --> pdb=" O TYR H 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 821 through 827' Processing helix chain 'H' and resid 876 through 901 removed outlier: 3.815A pdb=" N ARG H 880 " --> pdb=" O PRO H 876 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N ILE H 881 " --> pdb=" O HIS H 877 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N GLU H 891 " --> pdb=" O GLU H 887 " (cutoff:3.500A) removed outlier: 3.845A pdb=" N LEU H 892 " --> pdb=" O ASN H 888 " (cutoff:3.500A) Processing helix chain 'H' and resid 920 through 925 Proline residue: H 925 - end of helix Processing helix chain 'H' and resid 929 through 946 removed outlier: 4.269A pdb=" N MET H 935 " --> pdb=" O TYR H 931 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N LEU H 940 " --> pdb=" O SER H 936 " (cutoff:3.500A) Processing helix chain 'H' and resid 989 through 1014 removed outlier: 3.708A pdb=" N ASP H 997 " --> pdb=" O GLU H 993 " (cutoff:3.500A) removed outlier: 5.259A pdb=" N ARG H1013 " --> pdb=" O ARG H1009 " (cutoff:3.500A) removed outlier: 4.687A pdb=" N GLN H1014 " --> pdb=" O ASP H1010 " (cutoff:3.500A) Processing helix chain 'H' and resid 1042 through 1059 removed outlier: 4.881A pdb=" N ASN H1046 " --> pdb=" O THR H1042 " (cutoff:3.500A) Processing helix chain 'H' and resid 1220 through 1225 removed outlier: 5.888A pdb=" N LYS H1225 " --> pdb=" O VAL H1221 " (cutoff:3.500A) Processing helix chain 'H' and resid 1229 through 1235 removed outlier: 4.985A pdb=" N GLN H1233 " --> pdb=" O ILE H1229 " (cutoff:3.500A) removed outlier: 6.422A pdb=" N GLU H1234 " --> pdb=" O CYS H1230 " (cutoff:3.500A) Processing helix chain 'H' and resid 1238 through 1244 removed outlier: 4.717A pdb=" N ASN H1242 " --> pdb=" O PRO H1238 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N THR H1243 " --> pdb=" O PHE H1239 " (cutoff:3.500A) removed outlier: 4.727A pdb=" N ASN H1244 " --> pdb=" O ALA H1240 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 1238 through 1244' Processing helix chain 'H' and resid 1570 through 1576 removed outlier: 4.183A pdb=" N GLU H1574 " --> pdb=" O LEU H1570 " (cutoff:3.500A) removed outlier: 3.612A pdb=" N LYS H1576 " --> pdb=" O LYS H1572 " (cutoff:3.500A) Processing helix chain 'H' and resid 1640 through 1648 removed outlier: 3.949A pdb=" N LEU H1644 " --> pdb=" O ASP H1640 " (cutoff:3.500A) removed outlier: 4.388A pdb=" N THR H1645 " --> pdb=" O ILE H1641 " (cutoff:3.500A) removed outlier: 6.100A pdb=" N GLU H1646 " --> pdb=" O LEU H1642 " (cutoff:3.500A) removed outlier: 4.594A pdb=" N GLN H1647 " --> pdb=" O GLU H1643 " (cutoff:3.500A) removed outlier: 4.615A pdb=" N GLU H1648 " --> pdb=" O LEU H1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 1640 through 1648' Processing helix chain 'H' and resid 1649 through 1666 removed outlier: 4.292A pdb=" N ALA H1666 " --> pdb=" O SER H1662 " (cutoff:3.500A) Processing helix chain 'H' and resid 1669 through 1680 Processing helix chain 'H' and resid 1681 through 1692 removed outlier: 3.661A pdb=" N LEU H1685 " --> pdb=" O ASP H1681 " (cutoff:3.500A) removed outlier: 4.098A pdb=" N GLU H1690 " --> pdb=" O LEU H1686 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N ASN H1691 " --> pdb=" O TYR H1687 " (cutoff:3.500A) removed outlier: 5.801A pdb=" N LYS H1692 " --> pdb=" O ALA H1688 " (cutoff:3.500A) Processing helix chain 'H' and resid 1695 through 1710 removed outlier: 3.996A pdb=" N ILE H1707 " --> pdb=" O TYR H1703 " (cutoff:3.500A) Processing helix chain 'H' and resid 1711 through 1723 removed outlier: 5.064A pdb=" N ASN H1723 " --> pdb=" O LEU H1719 " (cutoff:3.500A) Processing helix chain 'H' and resid 1730 through 1736 removed outlier: 3.931A pdb=" N ILE H1736 " --> pdb=" O GLU H1732 " (cutoff:3.500A) Processing helix chain 'H' and resid 1784 through 1803 removed outlier: 3.681A pdb=" N ALA H1789 " --> pdb=" O ASP H1785 " (cutoff:3.500A) Processing helix chain 'H' and resid 1813 through 1832 Proline residue: H1820 - end of helix removed outlier: 4.250A pdb=" N GLY H1832 " --> pdb=" O LEU H1828 " (cutoff:3.500A) Processing helix chain 'H' and resid 1835 through 1847 Processing helix chain 'H' and resid 1893 through 1898 removed outlier: 3.545A pdb=" N MET H1897 " --> pdb=" O GLY H1893 " (cutoff:3.500A) removed outlier: 5.671A pdb=" N LYS H1898 " --> pdb=" O LEU H1894 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 1893 through 1898' Processing helix chain 'H' and resid 1901 through 1948 removed outlier: 4.481A pdb=" N LEU H1909 " --> pdb=" O LEU H1905 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N LEU H1910 " --> pdb=" O GLN H1906 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N VAL H1948 " --> pdb=" O ARG H1944 " (cutoff:3.500A) Processing helix chain 'H' and resid 2000 through 2012 removed outlier: 3.749A pdb=" N LEU H2004 " --> pdb=" O PHE H2000 " (cutoff:3.500A) Processing helix chain 'H' and resid 2024 through 2039 removed outlier: 3.658A pdb=" N TYR H2039 " --> pdb=" O GLU H2035 " (cutoff:3.500A) Processing helix chain 'H' and resid 2058 through 2073 removed outlier: 3.546A pdb=" N VAL H2068 " --> pdb=" O SER H2064 " (cutoff:3.500A) removed outlier: 4.137A pdb=" N GLU H2073 " --> pdb=" O ARG H2069 " (cutoff:3.500A) Processing helix chain 'H' and resid 2078 through 2095 removed outlier: 3.743A pdb=" N VAL H2082 " --> pdb=" O ASP H2078 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N LEU H2088 " --> pdb=" O ALA H2084 " (cutoff:3.500A) Processing helix chain 'H' and resid 2096 through 2106 removed outlier: 3.900A pdb=" N ALA H2102 " --> pdb=" O GLY H2098 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N LEU H2103 " --> pdb=" O LEU H2099 " (cutoff:3.500A) Proline residue: H2104 - end of helix Processing helix chain 'H' and resid 2113 through 2134 removed outlier: 5.148A pdb=" N ARG H2134 " --> pdb=" O LEU H2130 " (cutoff:3.500A) Processing helix chain 'H' and resid 2136 through 2153 removed outlier: 4.196A pdb=" N GLU H2140 " --> pdb=" O GLY H2136 " (cutoff:3.500A) removed outlier: 6.009A pdb=" N LYS H2141 " --> pdb=" O LYS H2137 " (cutoff:3.500A) removed outlier: 5.307A pdb=" N LEU H2142 " --> pdb=" O GLU H2138 " (cutoff:3.500A) Processing helix chain 'H' and resid 2154 through 2159 removed outlier: 3.719A pdb=" N GLN H2158 " --> pdb=" O LYS H2154 " (cutoff:3.500A) removed outlier: 5.616A pdb=" N HIS H2159 " --> pdb=" O VAL H2155 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 2154 through 2159' Processing helix chain 'H' and resid 2160 through 2167 removed outlier: 3.957A pdb=" N GLY H2167 " --> pdb=" O MET H2163 " (cutoff:3.500A) Processing helix chain 'H' and resid 2168 through 2181 removed outlier: 4.087A pdb=" N GLY H2181 " --> pdb=" O VAL H2177 " (cutoff:3.500A) Processing helix chain 'H' and resid 2192 through 2208 removed outlier: 3.680A pdb=" N PHE H2200 " --> pdb=" O ASN H2196 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N TYR H2203 " --> pdb=" O ARG H2199 " (cutoff:3.500A) removed outlier: 3.897A pdb=" N ILE H2207 " --> pdb=" O TYR H2203 " (cutoff:3.500A) removed outlier: 4.895A pdb=" N SER H2208 " --> pdb=" O PHE H2204 " (cutoff:3.500A) Processing helix chain 'H' and resid 2209 through 2219 removed outlier: 3.555A pdb=" N MET H2215 " --> pdb=" O ASN H2211 " (cutoff:3.500A) removed outlier: 3.733A pdb=" N ASP H2217 " --> pdb=" O LYS H2213 " (cutoff:3.500A) removed outlier: 4.621A pdb=" N HIS H2218 " --> pdb=" O ALA H2214 " (cutoff:3.500A) removed outlier: 4.521A pdb=" N LEU H2219 " --> pdb=" O MET H2215 " (cutoff:3.500A) Processing helix chain 'H' and resid 2220 through 2226 removed outlier: 3.953A pdb=" N GLU H2224 " --> pdb=" O SER H2220 " (cutoff:3.500A) Processing helix chain 'H' and resid 2239 through 2250 removed outlier: 3.979A pdb=" N VAL H2248 " --> pdb=" O ALA H2244 " (cutoff:3.500A) removed outlier: 5.628A pdb=" N ASP H2250 " --> pdb=" O ALA H2246 " (cutoff:3.500A) Processing helix chain 'H' and resid 2251 through 2258 Processing helix chain 'H' and resid 2259 through 2271 removed outlier: 4.350A pdb=" N LEU H2263 " --> pdb=" O ARG H2259 " (cutoff:3.500A) removed outlier: 4.277A pdb=" N ALA H2271 " --> pdb=" O VAL H2267 " (cutoff:3.500A) Processing helix chain 'H' and resid 2294 through 2309 removed outlier: 4.658A pdb=" N ARG H2298 " --> pdb=" O VAL H2294 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N TYR H2299 " --> pdb=" O GLU H2295 " (cutoff:3.500A) removed outlier: 4.664A pdb=" N CYS H2309 " --> pdb=" O PHE H2305 " (cutoff:3.500A) Processing helix chain 'H' and resid 2314 through 2329 removed outlier: 4.185A pdb=" N ALA H2318 " --> pdb=" O VAL H2314 " (cutoff:3.500A) Proline residue: H2329 - end of helix Processing helix chain 'H' and resid 2343 through 2351 removed outlier: 3.780A pdb=" N GLU H2349 " --> pdb=" O LEU H2345 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N GLU H2350 " --> pdb=" O ALA H2346 " (cutoff:3.500A) removed outlier: 4.324A pdb=" N ALA H2351 " --> pdb=" O ALA H2347 " (cutoff:3.500A) Processing helix chain 'H' and resid 2386 through 2403 removed outlier: 3.918A pdb=" N MET H2390 " --> pdb=" O GLY H2386 " (cutoff:3.500A) removed outlier: 4.813A pdb=" N CYS H2403 " --> pdb=" O LEU H2399 " (cutoff:3.500A) Processing helix chain 'H' and resid 2417 through 2427 removed outlier: 3.935A pdb=" N ILE H2423 " --> pdb=" O ARG H2419 " (cutoff:3.500A) Processing helix chain 'H' and resid 2432 through 2442 removed outlier: 4.028A pdb=" N PHE H2441 " --> pdb=" O ILE H2437 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N GLN H2442 " --> pdb=" O SER H2438 " (cutoff:3.500A) Processing helix chain 'H' and resid 2461 through 2476 removed outlier: 4.103A pdb=" N HIS H2465 " --> pdb=" O PHE H2461 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N LYS H2466 " --> pdb=" O CYS H2462 " (cutoff:3.500A) Processing helix chain 'H' and resid 2481 through 2488 removed outlier: 4.063A pdb=" N LEU H2488 " --> pdb=" O PHE H2484 " (cutoff:3.500A) Processing helix chain 'H' and resid 2492 through 2500 removed outlier: 4.309A pdb=" N ASP H2496 " --> pdb=" O GLY H2492 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ALA H2500 " --> pdb=" O ASP H2496 " (cutoff:3.500A) Processing helix chain 'H' and resid 2514 through 2529 removed outlier: 5.190A pdb=" N ASN H2518 " --> pdb=" O ALA H2514 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N ARG H2519 " --> pdb=" O LEU H2515 " (cutoff:3.500A) removed outlier: 3.613A pdb=" N CYS H2522 " --> pdb=" O ASN H2518 " (cutoff:3.500A) removed outlier: 3.651A pdb=" N LEU H2526 " --> pdb=" O CYS H2522 " (cutoff:3.500A) Proline residue: H2527 - end of helix Processing helix chain 'H' and resid 2535 through 2553 removed outlier: 3.761A pdb=" N THR H2539 " --> pdb=" O LEU H2535 " (cutoff:3.500A) Processing helix chain 'H' and resid 2558 through 2576 removed outlier: 3.539A pdb=" N LYS H2564 " --> pdb=" O CYS H2560 " (cutoff:3.500A) removed outlier: 4.356A pdb=" N SER H2576 " --> pdb=" O VAL H2572 " (cutoff:3.500A) Processing helix chain 'H' and resid 2582 through 2601 removed outlier: 3.723A pdb=" N MET H2586 " --> pdb=" O ARG H2582 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N ARG H2592 " --> pdb=" O HIS H2588 " (cutoff:3.500A) Proline residue: H2598 - end of helix Processing helix chain 'H' and resid 2605 through 2627 removed outlier: 4.141A pdb=" N ARG H2617 " --> pdb=" O ASN H2613 " (cutoff:3.500A) removed outlier: 3.900A pdb=" N CYS H2618 " --> pdb=" O HIS H2614 " (cutoff:3.500A) Proline residue: H2625 - end of helix Processing helix chain 'H' and resid 2634 through 2653 removed outlier: 3.995A pdb=" N LEU H2653 " --> pdb=" O ILE H2649 " (cutoff:3.500A) Processing helix chain 'H' and resid 2658 through 2679 Proline residue: H2668 - end of helix Proline residue: H2678 - end of helix Processing helix chain 'H' and resid 2715 through 2741 removed outlier: 3.732A pdb=" N PHE H2721 " --> pdb=" O LYS H2717 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N LYS H2724 " --> pdb=" O TYR H2720 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N GLU H2727 " --> pdb=" O ASN H2723 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ASN H2740 " --> pdb=" O ASP H2736 " (cutoff:3.500A) Processing helix chain 'H' and resid 2760 through 2765 removed outlier: 3.927A pdb=" N LEU H2764 " --> pdb=" O PRO H2760 " (cutoff:3.500A) removed outlier: 6.016A pdb=" N SER H2765 " --> pdb=" O TYR H2761 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 2760 through 2765' Processing helix chain 'H' and resid 2768 through 2785 removed outlier: 4.696A pdb=" N TYR H2772 " --> pdb=" O GLU H2768 " (cutoff:3.500A) Proline residue: H2775 - end of helix Processing helix chain 'H' and resid 2835 through 2865 removed outlier: 3.709A pdb=" N SER H2863 " --> pdb=" O LEU H2859 " (cutoff:3.500A) removed outlier: 4.413A pdb=" N LYS H2864 " --> pdb=" O GLU H2860 " (cutoff:3.500A) removed outlier: 3.938A pdb=" N GLY H2865 " --> pdb=" O LEU H2861 " (cutoff:3.500A) Processing helix chain 'H' and resid 2882 through 2899 removed outlier: 4.542A pdb=" N ASP H2886 " --> pdb=" O GLU H2882 " (cutoff:3.500A) removed outlier: 4.815A pdb=" N LYS H2889 " --> pdb=" O LYS H2885 " (cutoff:3.500A) removed outlier: 4.309A pdb=" N ILE H2893 " --> pdb=" O LYS H2889 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N LEU H2894 " --> pdb=" O ALA H2890 " (cutoff:3.500A) Processing helix chain 'H' and resid 2982 through 3003 removed outlier: 4.342A pdb=" N ALA H2986 " --> pdb=" O TYR H2982 " (cutoff:3.500A) Proline residue: H2990 - end of helix Processing helix chain 'H' and resid 3009 through 3028 Processing helix chain 'H' and resid 3034 through 3053 removed outlier: 3.684A pdb=" N GLY H3038 " --> pdb=" O LEU H3034 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N GLU H3052 " --> pdb=" O LYS H3048 " (cutoff:3.500A) removed outlier: 5.053A pdb=" N SER H3053 " --> pdb=" O THR H3049 " (cutoff:3.500A) Processing helix chain 'H' and resid 3061 through 3082 removed outlier: 5.307A pdb=" N ALA H3065 " --> pdb=" O PHE H3061 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N LEU H3069 " --> pdb=" O ALA H3065 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N GLU H3070 " --> pdb=" O ALA H3066 " (cutoff:3.500A) removed outlier: 4.114A pdb=" N THR H3082 " --> pdb=" O GLN H3078 " (cutoff:3.500A) Processing helix chain 'H' and resid 3098 through 3117 removed outlier: 4.379A pdb=" N LEU H3102 " --> pdb=" O THR H3098 " (cutoff:3.500A) removed outlier: 4.336A pdb=" N LEU H3103 " --> pdb=" O THR H3099 " (cutoff:3.500A) Proline residue: H3104 - end of helix removed outlier: 4.230A pdb=" N GLN H3117 " --> pdb=" O ILE H3113 " (cutoff:3.500A) Processing helix chain 'H' and resid 3125 through 3144 removed outlier: 4.369A pdb=" N SER H3144 " --> pdb=" O ALA H3140 " (cutoff:3.500A) Processing helix chain 'H' and resid 3150 through 3164 Processing helix chain 'H' and resid 3171 through 3183 removed outlier: 3.892A pdb=" N TYR H3182 " --> pdb=" O LYS H3178 " (cutoff:3.500A) removed outlier: 4.218A pdb=" N SER H3183 " --> pdb=" O HIS H3179 " (cutoff:3.500A) Processing helix chain 'H' and resid 3613 through 3629 removed outlier: 4.116A pdb=" N ALA H3617 " --> pdb=" O PRO H3613 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ASN H3619 " --> pdb=" O HIS H3615 " (cutoff:3.500A) Processing helix chain 'H' and resid 3637 through 3647 removed outlier: 4.632A pdb=" N LYS H3647 " --> pdb=" O GLU H3643 " (cutoff:3.500A) Processing helix chain 'H' and resid 3663 through 3678 removed outlier: 3.546A pdb=" N THR H3678 " --> pdb=" O ARG H3674 " (cutoff:3.500A) Processing helix chain 'H' and resid 3686 through 3700 removed outlier: 4.431A pdb=" N CYS H3700 " --> pdb=" O MET H3696 " (cutoff:3.500A) Processing helix chain 'H' and resid 3714 through 3736 removed outlier: 3.590A pdb=" N ASP H3734 " --> pdb=" O ALA H3730 " (cutoff:3.500A) removed outlier: 4.905A pdb=" N ARG H3735 " --> pdb=" O ARG H3731 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N GLY H3736 " --> pdb=" O LEU H3732 " (cutoff:3.500A) Processing helix chain 'H' and resid 3737 through 3749 removed outlier: 3.876A pdb=" N VAL H3741 " --> pdb=" O ALA H3737 " (cutoff:3.500A) removed outlier: 4.945A pdb=" N LYS H3749 " --> pdb=" O ILE H3745 " (cutoff:3.500A) Processing helix chain 'H' and resid 3753 through 3768 removed outlier: 3.534A pdb=" N ALA H3757 " --> pdb=" O GLY H3753 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA H3765 " --> pdb=" O LYS H3761 " (cutoff:3.500A) Processing helix chain 'H' and resid 3771 through 3786 removed outlier: 3.909A pdb=" N LYS H3785 " --> pdb=" O TYR H3781 " (cutoff:3.500A) removed outlier: 4.873A pdb=" N LYS H3786 " --> pdb=" O LEU H3782 " (cutoff:3.500A) Processing helix chain 'H' and resid 3787 through 3801 removed outlier: 4.073A pdb=" N PHE H3791 " --> pdb=" O ASP H3787 " (cutoff:3.500A) removed outlier: 4.258A pdb=" N SER H3800 " --> pdb=" O GLY H3796 " (cutoff:3.500A) removed outlier: 4.084A pdb=" N CYS H3801 " --> pdb=" O LEU H3797 " (cutoff:3.500A) Processing helix chain 'H' and resid 3805 through 3816 removed outlier: 4.299A pdb=" N PHE H3809 " --> pdb=" O ASP H3805 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N ALA H3815 " --> pdb=" O ARG H3811 " (cutoff:3.500A) removed outlier: 4.720A pdb=" N GLU H3816 " --> pdb=" O GLN H3812 " (cutoff:3.500A) Processing helix chain 'H' and resid 3834 through 3849 removed outlier: 4.292A pdb=" N CYS H3848 " --> pdb=" O LEU H3844 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N GLU H3849 " --> pdb=" O GLN H3845 " (cutoff:3.500A) Processing helix chain 'H' and resid 3852 through 3861 Processing helix chain 'H' and resid 3870 through 3894 removed outlier: 3.768A pdb=" N SER H3874 " --> pdb=" O ASN H3870 " (cutoff:3.500A) Processing helix chain 'H' and resid 3900 through 3926 removed outlier: 3.608A pdb=" N ASN H3919 " --> pdb=" O LYS H3915 " (cutoff:3.500A) Processing helix chain 'H' and resid 3929 through 3940 removed outlier: 5.230A pdb=" N ARG H3940 " --> pdb=" O LEU H3936 " (cutoff:3.500A) Processing helix chain 'H' and resid 3941 through 3960 removed outlier: 3.604A pdb=" N HIS H3954 " --> pdb=" O HIS H3950 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N MET H3957 " --> pdb=" O ALA H3953 " (cutoff:3.500A) removed outlier: 4.454A pdb=" N LYS H3958 " --> pdb=" O HIS H3954 " (cutoff:3.500A) Processing helix chain 'H' and resid 3965 through 3988 removed outlier: 3.711A pdb=" N GLU H3988 " --> pdb=" O LEU H3984 " (cutoff:3.500A) Processing helix chain 'H' and resid 3994 through 4012 removed outlier: 3.513A pdb=" N SER H4008 " --> pdb=" O LEU H4004 " (cutoff:3.500A) removed outlier: 5.472A pdb=" N ASN H4009 " --> pdb=" O VAL H4005 " (cutoff:3.500A) removed outlier: 7.141A pdb=" N ASN H4010 " --> pdb=" O GLU H4006 " (cutoff:3.500A) removed outlier: 4.838A pdb=" N VAL H4011 " --> pdb=" O SER H4007 " (cutoff:3.500A) removed outlier: 6.481A pdb=" N GLU H4012 " --> pdb=" O SER H4008 " (cutoff:3.500A) Processing helix chain 'H' and resid 4013 through 4028 removed outlier: 4.503A pdb=" N LEU H4024 " --> pdb=" O MET H4020 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N LYS H4025 " --> pdb=" O PHE H4021 " (cutoff:3.500A) Processing helix chain 'H' and resid 4031 through 4038 removed outlier: 4.087A pdb=" N GLU H4035 " --> pdb=" O ASP H4031 " (cutoff:3.500A) removed outlier: 5.086A pdb=" N TYR H4036 " --> pdb=" O THR H4032 " (cutoff:3.500A) removed outlier: 3.979A pdb=" N ASP H4037 " --> pdb=" O PHE H4033 " (cutoff:3.500A) Proline residue: H4038 - end of helix No H-bonds generated for 'chain 'H' and resid 4031 through 4038' Processing helix chain 'H' and resid 4045 through 4057 Processing helix chain 'H' and resid 4060 through 4071 Processing helix chain 'H' and resid 4086 through 4110 Proline residue: H4091 - end of helix Processing helix chain 'H' and resid 4113 through 4124 removed outlier: 3.736A pdb=" N ALA H4123 " --> pdb=" O PHE H4119 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N GLU H4124 " --> pdb=" O LEU H4120 " (cutoff:3.500A) Processing helix chain 'H' and resid 4125 through 4132 removed outlier: 3.546A pdb=" N GLN H4131 " --> pdb=" O LEU H4127 " (cutoff:3.500A) Proline residue: H4132 - end of helix Processing helix chain 'H' and resid 4154 through 4163 removed outlier: 3.553A pdb=" N ARG H4158 " --> pdb=" O SER H4154 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N LYS H4163 " --> pdb=" O THR H4159 " (cutoff:3.500A) Processing helix chain 'H' and resid 4164 through 4180 Processing helix chain 'H' and resid 4182 through 4207 removed outlier: 4.497A pdb=" N MET H4187 " --> pdb=" O GLU H4183 " (cutoff:3.500A) removed outlier: 4.891A pdb=" N GLU H4188 " --> pdb=" O LYS H4184 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N ILE H4207 " --> pdb=" O LEU H4203 " (cutoff:3.500A) Processing helix chain 'H' and resid 4486 through 4500 removed outlier: 3.888A pdb=" N GLN H4490 " --> pdb=" O ILE H4486 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N PHE H4500 " --> pdb=" O PHE H4496 " (cutoff:3.500A) Processing helix chain 'H' and resid 4501 through 4519 removed outlier: 3.518A pdb=" N ILE H4517 " --> pdb=" O ALA H4513 " (cutoff:3.500A) removed outlier: 4.790A pdb=" N LEU H4519 " --> pdb=" O ASN H4515 " (cutoff:3.500A) Processing helix chain 'H' and resid 4570 through 4614 removed outlier: 3.998A pdb=" N LYS H4595 " --> pdb=" O TYR H4591 " (cutoff:3.500A) removed outlier: 5.283A pdb=" N VAL H4596 " --> pdb=" O TYR H4592 " (cutoff:3.500A) Proline residue: H4597 - end of helix Processing helix chain 'H' and resid 4626 through 4639 removed outlier: 3.973A pdb=" N ASP H4632 " --> pdb=" O LYS H4628 " (cutoff:3.500A) removed outlier: 4.819A pdb=" N ARG H4633 " --> pdb=" O GLY H4629 " (cutoff:3.500A) removed outlier: 5.440A pdb=" N LEU H4634 " --> pdb=" O GLN H4630 " (cutoff:3.500A) removed outlier: 5.315A pdb=" N VAL H4635 " --> pdb=" O TRP H4631 " (cutoff:3.500A) removed outlier: 4.340A pdb=" N ILE H4636 " --> pdb=" O ASP H4632 " (cutoff:3.500A) removed outlier: 4.572A pdb=" N ASN H4637 " --> pdb=" O ARG H4633 " (cutoff:3.500A) removed outlier: 4.979A pdb=" N THR H4638 " --> pdb=" O LEU H4634 " (cutoff:3.500A) removed outlier: 5.372A pdb=" N GLN H4639 " --> pdb=" O VAL H4635 " (cutoff:3.500A) Processing helix chain 'H' and resid 4647 through 4663 removed outlier: 4.800A pdb=" N LYS H4651 " --> pdb=" O ASP H4647 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ARG H4652 " --> pdb=" O LYS H4648 " (cutoff:3.500A) removed outlier: 4.320A pdb=" N GLY H4659 " --> pdb=" O MET H4655 " (cutoff:3.500A) removed outlier: 5.311A pdb=" N GLU H4660 " --> pdb=" O ASP H4656 " (cutoff:3.500A) removed outlier: 5.517A pdb=" N PHE H4661 " --> pdb=" O LYS H4657 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N TYR H4662 " --> pdb=" O TYR H4658 " (cutoff:3.500A) Processing helix chain 'H' and resid 4664 through 4672 Processing helix chain 'H' and resid 4704 through 4717 removed outlier: 3.561A pdb=" N THR H4716 " --> pdb=" O GLY H4712 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N ASP H4717 " --> pdb=" O VAL H4713 " (cutoff:3.500A) Processing helix chain 'H' and resid 4718 through 4737 Processing helix chain 'H' and resid 4744 through 4750 removed outlier: 5.484A pdb=" N ALA H4748 " --> pdb=" O LEU H4744 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N MET H4749 " --> pdb=" O LEU H4745 " (cutoff:3.500A) removed outlier: 4.241A pdb=" N GLY H4750 " --> pdb=" O ASP H4746 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 4744 through 4750' Processing helix chain 'H' and resid 4752 through 4766 removed outlier: 4.211A pdb=" N ASN H4764 " --> pdb=" O SER H4760 " (cutoff:3.500A) removed outlier: 4.123A pdb=" N GLY H4765 " --> pdb=" O VAL H4761 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N LYS H4766 " --> pdb=" O THR H4762 " (cutoff:3.500A) Processing helix chain 'H' and resid 4767 through 4790 removed outlier: 3.963A pdb=" N ALA H4786 " --> pdb=" O TYR H4782 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE H4787 " --> pdb=" O THR H4783 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ASN H4788 " --> pdb=" O VAL H4784 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N PHE H4789 " --> pdb=" O VAL H4785 " (cutoff:3.500A) removed outlier: 4.504A pdb=" N PHE H4790 " --> pdb=" O ALA H4786 " (cutoff:3.500A) Processing helix chain 'H' and resid 4809 through 4824 removed outlier: 3.794A pdb=" N CYS H4813 " --> pdb=" O ASP H4809 " (cutoff:3.500A) Processing helix chain 'H' and resid 4828 through 4833 removed outlier: 4.225A pdb=" N ILE H4832 " --> pdb=" O ILE H4828 " (cutoff:3.500A) removed outlier: 6.127A pdb=" N GLU H4833 " --> pdb=" O GLY H4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 4828 through 4833' Processing helix chain 'H' and resid 4838 through 4887 removed outlier: 4.226A pdb=" N ILE H4842 " --> pdb=" O ASP H4838 " (cutoff:3.500A) removed outlier: 5.038A pdb=" N TYR H4843 " --> pdb=" O GLU H4839 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N LEU H4860 " --> pdb=" O ILE H4856 " (cutoff:3.500A) removed outlier: 3.803A pdb=" N GLU H4886 " --> pdb=" O LYS H4882 " (cutoff:3.500A) Processing helix chain 'H' and resid 4895 through 4903 removed outlier: 4.365A pdb=" N PHE H4899 " --> pdb=" O GLY H4895 " (cutoff:3.500A) removed outlier: 4.906A pdb=" N ASP H4900 " --> pdb=" O ASN H4896 " (cutoff:3.500A) removed outlier: 4.269A pdb=" N THR H4901 " --> pdb=" O ASP H4897 " (cutoff:3.500A) removed outlier: 4.747A pdb=" N VAL H4902 " --> pdb=" O TYR H4898 " (cutoff:3.500A) Proline residue: H4903 - end of helix No H-bonds generated for 'chain 'H' and resid 4895 through 4903' Processing helix chain 'H' and resid 4904 through 4912 Processing helix chain 'H' and resid 4915 through 4930 removed outlier: 4.281A pdb=" N TYR H4919 " --> pdb=" O ASN H4915 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N LEU H4920 " --> pdb=" O LEU H4916 " (cutoff:3.500A) removed outlier: 4.651A pdb=" N ASP H4930 " --> pdb=" O LEU H4926 " (cutoff:3.500A) Processing helix chain 'H' and resid 4935 through 4948 Processing helix chain 'H' and resid 4958 through 4964 removed outlier: 3.746A pdb=" N TYR H4963 " --> pdb=" O PHE H4959 " (cutoff:3.500A) Processing helix chain 'H' and resid 982 through 987 removed outlier: 4.820A pdb=" N ILE H 986 " --> pdb=" O LEU H 983 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LYS H 987 " --> pdb=" O SER H 984 " (cutoff:3.500A) Processing helix chain 'H' and resid 4738 through 4743 removed outlier: 4.394A pdb=" N ALA H4741 " --> pdb=" O PHE H4738 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N ALA H4742 " --> pdb=" O PHE H4739 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N HIS H4743 " --> pdb=" O PHE H4740 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 4738 through 4743' Processing helix chain 'H' and resid 54 through 59 Proline residue: H 59 - end of helix No H-bonds generated for 'chain 'H' and resid 54 through 59' Processing helix chain 'H' and resid 4615 through 4620 Processing sheet with id= 1, first strand: chain 'A' and resid 4 through 7 removed outlier: 6.862A pdb=" N ARG A 71 " --> pdb=" O ILE A 7 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ASP A 100 " --> pdb=" O THR A 27 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N THR A 27 " --> pdb=" O ASP A 100 " (cutoff:3.500A) Processing sheet with id= 2, first strand: chain 'A' and resid 21 through 24 removed outlier: 4.486A pdb=" N THR A 21 " --> pdb=" O GLU A 107 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N GLU A 107 " --> pdb=" O THR A 21 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'C' and resid 4 through 7 removed outlier: 6.862A pdb=" N ARG C 71 " --> pdb=" O ILE C 7 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ASP C 100 " --> pdb=" O THR C 27 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N THR C 27 " --> pdb=" O ASP C 100 " (cutoff:3.500A) Processing sheet with id= 4, first strand: chain 'C' and resid 21 through 24 removed outlier: 4.487A pdb=" N THR C 21 " --> pdb=" O GLU C 107 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N GLU C 107 " --> pdb=" O THR C 21 " (cutoff:3.500A) Processing sheet with id= 5, first strand: chain 'E' and resid 4 through 7 removed outlier: 6.862A pdb=" N ARG E 71 " --> pdb=" O ILE E 7 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N ASP E 100 " --> pdb=" O THR E 27 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N THR E 27 " --> pdb=" O ASP E 100 " (cutoff:3.500A) Processing sheet with id= 6, first strand: chain 'E' and resid 21 through 24 removed outlier: 4.487A pdb=" N THR E 21 " --> pdb=" O GLU E 107 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N GLU E 107 " --> pdb=" O THR E 21 " (cutoff:3.500A) Processing sheet with id= 7, first strand: chain 'G' and resid 4 through 7 removed outlier: 6.861A pdb=" N ARG G 71 " --> pdb=" O ILE G 7 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N ASP G 100 " --> pdb=" O THR G 27 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N THR G 27 " --> pdb=" O ASP G 100 " (cutoff:3.500A) Processing sheet with id= 8, first strand: chain 'G' and resid 21 through 24 removed outlier: 4.487A pdb=" N THR G 21 " --> pdb=" O GLU G 107 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N GLU G 107 " --> pdb=" O THR G 21 " (cutoff:3.500A) Processing sheet with id= 9, first strand: chain 'B' and resid 47 through 52 removed outlier: 6.043A pdb=" N LYS B 34 " --> pdb=" O THR B 52 " (cutoff:3.500A) removed outlier: 5.950A pdb=" N LEU B 22 " --> pdb=" O LEU B 37 " (cutoff:3.500A) removed outlier: 10.650A pdb=" N ALA B 39 " --> pdb=" O VAL B 20 " (cutoff:3.500A) removed outlier: 13.359A pdb=" N VAL B 20 " --> pdb=" O ALA B 39 " (cutoff:3.500A) removed outlier: 6.792A pdb=" N GLU B 19 " --> pdb=" O ILE B 217 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N ALA B 215 " --> pdb=" O VAL B 21 " (cutoff:3.500A) Processing sheet with id= 10, first strand: chain 'B' and resid 67 through 70 removed outlier: 6.480A pdb=" N LEU B 120 " --> pdb=" O GLU B 70 " (cutoff:3.500A) removed outlier: 4.131A pdb=" N HIS B 117 " --> pdb=" O ILE B 162 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N HIS B 163 " --> pdb=" O ILE B 182 " (cutoff:3.500A) Processing sheet with id= 11, first strand: chain 'B' and resid 193 through 196 Processing sheet with id= 12, first strand: chain 'B' and resid 244 through 247 Processing sheet with id= 13, first strand: chain 'B' and resid 313 through 318 removed outlier: 3.629A pdb=" N LYS B 304 " --> pdb=" O HIS B 299 " (cutoff:3.500A) removed outlier: 5.149A pdb=" N LEU B 297 " --> pdb=" O LEU B 306 " (cutoff:3.500A) removed outlier: 9.841A pdb=" N LEU B 308 " --> pdb=" O PHE B 295 " (cutoff:3.500A) removed outlier: 13.360A pdb=" N PHE B 295 " --> pdb=" O LEU B 308 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N ARG B 298 " --> pdb=" O ARG B 276 " (cutoff:3.500A) removed outlier: 8.160A pdb=" N LEU B 274 " --> pdb=" O VAL B 300 " (cutoff:3.500A) removed outlier: 4.531A pdb=" N ASP B 232 " --> pdb=" O LEU B 277 " (cutoff:3.500A) removed outlier: 6.742A pdb=" N VAL B 233 " --> pdb=" O SER B 408 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N SER B 406 " --> pdb=" O ARG B 235 " (cutoff:3.500A) Processing sheet with id= 14, first strand: chain 'B' and resid 329 through 332 Processing sheet with id= 15, first strand: chain 'B' and resid 372 through 376 Processing sheet with id= 16, first strand: chain 'B' and resid 644 through 648 removed outlier: 3.574A pdb=" N GLN B 645 " --> pdb=" O HIS B1631 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N SER B1629 " --> pdb=" O ARG B 647 " (cutoff:3.500A) Processing sheet with id= 17, first strand: chain 'B' and resid 652 through 656 removed outlier: 3.500A pdb=" N VAL B 792 " --> pdb=" O MET B 655 " (cutoff:3.500A) removed outlier: 5.510A pdb=" N GLY B 696 " --> pdb=" O VAL B 791 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N HIS B 692 " --> pdb=" O SER B 795 " (cutoff:3.500A) Processing sheet with id= 18, first strand: chain 'B' and resid 753 through 760 removed outlier: 4.156A pdb=" N ASP B 753 " --> pdb=" O VAL B 679 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N GLU B 676 " --> pdb=" O LEU B 803 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N LEU B 803 " --> pdb=" O GLU B 676 " (cutoff:3.500A) removed outlier: 6.290A pdb=" N LYS B 799 " --> pdb=" O ASP B 680 " (cutoff:3.500A) Processing sheet with id= 19, first strand: chain 'B' and resid 850 through 853 removed outlier: 6.798A pdb=" N VAL B1212 " --> pdb=" O VAL B1108 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N GLU B1104 " --> pdb=" O ASN B1216 " (cutoff:3.500A) removed outlier: 5.575A pdb=" N GLY B1099 " --> pdb=" O MET B1168 " (cutoff:3.500A) removed outlier: 6.013A pdb=" N PHE B1105 " --> pdb=" O VAL B1162 " (cutoff:3.500A) removed outlier: 5.028A pdb=" N GLY B1163 " --> pdb=" O THR B1176 " (cutoff:3.500A) removed outlier: 4.165A pdb=" N THR B1172 " --> pdb=" O ASP B1167 " (cutoff:3.500A) Processing sheet with id= 20, first strand: chain 'B' and resid 1085 through 1090 removed outlier: 3.572A pdb=" N ALA B1090 " --> pdb=" O PRO B1203 " (cutoff:3.500A) removed outlier: 3.677A pdb=" N GLY B1208 " --> pdb=" O ASP B1112 " (cutoff:3.500A) removed outlier: 7.355A pdb=" N ASP B1112 " --> pdb=" O GLY B1208 " (cutoff:3.500A) removed outlier: 5.079A pdb=" N ALA B1142 " --> pdb=" O TYR B1152 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N HIS B1146 " --> pdb=" O GLY B1148 " (cutoff:3.500A) Processing sheet with id= 21, first strand: chain 'B' and resid 1256 through 1260 removed outlier: 3.799A pdb=" N LEU B1595 " --> pdb=" O PHE B1301 " (cutoff:3.500A) removed outlier: 6.159A pdb=" N PHE B1301 " --> pdb=" O LEU B1595 " (cutoff:3.500A) removed outlier: 9.013A pdb=" N SER B1597 " --> pdb=" O ILE B1299 " (cutoff:3.500A) removed outlier: 13.049A pdb=" N ILE B1299 " --> pdb=" O SER B1597 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N LEU B1304 " --> pdb=" O PRO B1541 " (cutoff:3.500A) removed outlier: 6.129A pdb=" N ASN B1440 " --> pdb=" O GLN B1546 " (cutoff:3.500A) Processing sheet with id= 22, first strand: chain 'B' and resid 1268 through 1274 removed outlier: 4.529A pdb=" N GLU B1269 " --> pdb=" O GLY B1291 " (cutoff:3.500A) removed outlier: 4.481A pdb=" N GLY B1291 " --> pdb=" O GLU B1269 " (cutoff:3.500A) removed outlier: 3.939A pdb=" N SER B1289 " --> pdb=" O THR B1271 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N ILE B1273 " --> pdb=" O GLN B1287 " (cutoff:3.500A) removed outlier: 8.967A pdb=" N VAL B1552 " --> pdb=" O PHE B1433 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N PHE B1433 " --> pdb=" O VAL B1552 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N GLU B1556 " --> pdb=" O SER B1429 " (cutoff:3.500A) removed outlier: 6.596A pdb=" N SER B1429 " --> pdb=" O GLU B1556 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N TYR B1426 " --> pdb=" O VAL B1510 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N VAL B1510 " --> pdb=" O TYR B1426 " (cutoff:3.500A) removed outlier: 4.500A pdb=" N TYR B1428 " --> pdb=" O GLY B1508 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N GLY B1508 " --> pdb=" O TYR B1428 " (cutoff:3.500A) removed outlier: 4.214A pdb=" N VAL B1430 " --> pdb=" O GLU B1506 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N GLU B1506 " --> pdb=" O VAL B1430 " (cutoff:3.500A) removed outlier: 6.095A pdb=" N ASN B1502 " --> pdb=" O PRO B1434 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N CYS B1509 " --> pdb=" O THR B1519 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N LEU B1517 " --> pdb=" O VAL B1511 " (cutoff:3.500A) Processing sheet with id= 23, first strand: chain 'B' and resid 1307 through 1310 No H-bonds generated for sheet with id= 23 Processing sheet with id= 24, first strand: chain 'B' and resid 1609 through 1614 removed outlier: 8.056A pdb=" N SER B1609 " --> pdb=" O LEU B1622 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N LEU B1622 " --> pdb=" O SER B1609 " (cutoff:3.500A) removed outlier: 4.498A pdb=" N LEU B1618 " --> pdb=" O GLU B1613 " (cutoff:3.500A) Processing sheet with id= 25, first strand: chain 'B' and resid 1726 through 1729 Processing sheet with id= 26, first strand: chain 'B' and resid 2742 through 2745 Processing sheet with id= 27, first strand: chain 'B' and resid 4133 through 4140 removed outlier: 5.635A pdb=" N PHE B4133 " --> pdb=" O ILE B4153 " (cutoff:3.500A) Processing sheet with id= 28, first strand: chain 'B' and resid 4520 through 4524 removed outlier: 7.083A pdb=" N PHE B4520 " --> pdb=" O LEU B4562 " (cutoff:3.500A) removed outlier: 3.966A pdb=" N LEU B4562 " --> pdb=" O PHE B4520 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N TYR B4560 " --> pdb=" O LYS B4522 " (cutoff:3.500A) Processing sheet with id= 29, first strand: chain 'D' and resid 47 through 52 removed outlier: 6.042A pdb=" N LYS D 34 " --> pdb=" O THR D 52 " (cutoff:3.500A) removed outlier: 5.950A pdb=" N LEU D 22 " --> pdb=" O LEU D 37 " (cutoff:3.500A) removed outlier: 10.650A pdb=" N ALA D 39 " --> pdb=" O VAL D 20 " (cutoff:3.500A) removed outlier: 13.358A pdb=" N VAL D 20 " --> pdb=" O ALA D 39 " (cutoff:3.500A) removed outlier: 6.792A pdb=" N GLU D 19 " --> pdb=" O ILE D 217 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N ALA D 215 " --> pdb=" O VAL D 21 " (cutoff:3.500A) Processing sheet with id= 30, first strand: chain 'D' and resid 67 through 70 removed outlier: 6.481A pdb=" N LEU D 120 " --> pdb=" O GLU D 70 " (cutoff:3.500A) removed outlier: 4.131A pdb=" N HIS D 117 " --> pdb=" O ILE D 162 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N HIS D 163 " --> pdb=" O ILE D 182 " (cutoff:3.500A) Processing sheet with id= 31, first strand: chain 'D' and resid 193 through 196 Processing sheet with id= 32, first strand: chain 'D' and resid 244 through 247 Processing sheet with id= 33, first strand: chain 'D' and resid 313 through 318 removed outlier: 3.630A pdb=" N LYS D 304 " --> pdb=" O HIS D 299 " (cutoff:3.500A) removed outlier: 5.149A pdb=" N LEU D 297 " --> pdb=" O LEU D 306 " (cutoff:3.500A) removed outlier: 9.842A pdb=" N LEU D 308 " --> pdb=" O PHE D 295 " (cutoff:3.500A) removed outlier: 13.360A pdb=" N PHE D 295 " --> pdb=" O LEU D 308 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N ARG D 298 " --> pdb=" O ARG D 276 " (cutoff:3.500A) removed outlier: 8.160A pdb=" N LEU D 274 " --> pdb=" O VAL D 300 " (cutoff:3.500A) removed outlier: 4.530A pdb=" N ASP D 232 " --> pdb=" O LEU D 277 " (cutoff:3.500A) removed outlier: 6.742A pdb=" N VAL D 233 " --> pdb=" O SER D 408 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N SER D 406 " --> pdb=" O ARG D 235 " (cutoff:3.500A) Processing sheet with id= 34, first strand: chain 'D' and resid 329 through 332 Processing sheet with id= 35, first strand: chain 'D' and resid 372 through 376 Processing sheet with id= 36, first strand: chain 'D' and resid 644 through 648 removed outlier: 3.574A pdb=" N GLN D 645 " --> pdb=" O HIS D1631 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N SER D1629 " --> pdb=" O ARG D 647 " (cutoff:3.500A) Processing sheet with id= 37, first strand: chain 'D' and resid 652 through 656 removed outlier: 5.511A pdb=" N GLY D 696 " --> pdb=" O VAL D 791 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N HIS D 692 " --> pdb=" O SER D 795 " (cutoff:3.500A) Processing sheet with id= 38, first strand: chain 'D' and resid 753 through 760 removed outlier: 4.156A pdb=" N ASP D 753 " --> pdb=" O VAL D 679 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N GLU D 676 " --> pdb=" O LEU D 803 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N LEU D 803 " --> pdb=" O GLU D 676 " (cutoff:3.500A) removed outlier: 6.290A pdb=" N LYS D 799 " --> pdb=" O ASP D 680 " (cutoff:3.500A) Processing sheet with id= 39, first strand: chain 'D' and resid 850 through 853 removed outlier: 6.798A pdb=" N VAL D1212 " --> pdb=" O VAL D1108 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N GLU D1104 " --> pdb=" O ASN D1216 " (cutoff:3.500A) removed outlier: 5.575A pdb=" N GLY D1099 " --> pdb=" O MET D1168 " (cutoff:3.500A) removed outlier: 6.014A pdb=" N PHE D1105 " --> pdb=" O VAL D1162 " (cutoff:3.500A) removed outlier: 5.028A pdb=" N GLY D1163 " --> pdb=" O THR D1176 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N THR D1172 " --> pdb=" O ASP D1167 " (cutoff:3.500A) Processing sheet with id= 40, first strand: chain 'D' and resid 1085 through 1090 removed outlier: 3.573A pdb=" N ALA D1090 " --> pdb=" O PRO D1203 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N GLY D1208 " --> pdb=" O ASP D1112 " (cutoff:3.500A) removed outlier: 7.355A pdb=" N ASP D1112 " --> pdb=" O GLY D1208 " (cutoff:3.500A) removed outlier: 5.080A pdb=" N ALA D1142 " --> pdb=" O TYR D1152 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N HIS D1146 " --> pdb=" O GLY D1148 " (cutoff:3.500A) Processing sheet with id= 41, first strand: chain 'D' and resid 1256 through 1260 removed outlier: 3.798A pdb=" N LEU D1595 " --> pdb=" O PHE D1301 " (cutoff:3.500A) removed outlier: 6.159A pdb=" N PHE D1301 " --> pdb=" O LEU D1595 " (cutoff:3.500A) removed outlier: 9.013A pdb=" N SER D1597 " --> pdb=" O ILE D1299 " (cutoff:3.500A) removed outlier: 13.049A pdb=" N ILE D1299 " --> pdb=" O SER D1597 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N LEU D1304 " --> pdb=" O PRO D1541 " (cutoff:3.500A) removed outlier: 6.129A pdb=" N ASN D1440 " --> pdb=" O GLN D1546 " (cutoff:3.500A) Processing sheet with id= 42, first strand: chain 'D' and resid 1268 through 1274 removed outlier: 4.529A pdb=" N GLU D1269 " --> pdb=" O GLY D1291 " (cutoff:3.500A) removed outlier: 4.481A pdb=" N GLY D1291 " --> pdb=" O GLU D1269 " (cutoff:3.500A) removed outlier: 3.939A pdb=" N SER D1289 " --> pdb=" O THR D1271 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N ILE D1273 " --> pdb=" O GLN D1287 " (cutoff:3.500A) removed outlier: 8.967A pdb=" N VAL D1552 " --> pdb=" O PHE D1433 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N PHE D1433 " --> pdb=" O VAL D1552 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N GLU D1556 " --> pdb=" O SER D1429 " (cutoff:3.500A) removed outlier: 6.596A pdb=" N SER D1429 " --> pdb=" O GLU D1556 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N TYR D1426 " --> pdb=" O VAL D1510 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N VAL D1510 " --> pdb=" O TYR D1426 " (cutoff:3.500A) removed outlier: 4.501A pdb=" N TYR D1428 " --> pdb=" O GLY D1508 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N GLY D1508 " --> pdb=" O TYR D1428 " (cutoff:3.500A) removed outlier: 4.214A pdb=" N VAL D1430 " --> pdb=" O GLU D1506 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N GLU D1506 " --> pdb=" O VAL D1430 " (cutoff:3.500A) removed outlier: 6.096A pdb=" N ASN D1502 " --> pdb=" O PRO D1434 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N CYS D1509 " --> pdb=" O THR D1519 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N LEU D1517 " --> pdb=" O VAL D1511 " (cutoff:3.500A) Processing sheet with id= 43, first strand: chain 'D' and resid 1307 through 1310 No H-bonds generated for sheet with id= 43 Processing sheet with id= 44, first strand: chain 'D' and resid 1609 through 1614 removed outlier: 8.056A pdb=" N SER D1609 " --> pdb=" O LEU D1622 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N LEU D1622 " --> pdb=" O SER D1609 " (cutoff:3.500A) removed outlier: 4.499A pdb=" N LEU D1618 " --> pdb=" O GLU D1613 " (cutoff:3.500A) Processing sheet with id= 45, first strand: chain 'D' and resid 1726 through 1729 Processing sheet with id= 46, first strand: chain 'D' and resid 2742 through 2745 Processing sheet with id= 47, first strand: chain 'D' and resid 4133 through 4140 removed outlier: 5.634A pdb=" N PHE D4133 " --> pdb=" O ILE D4153 " (cutoff:3.500A) Processing sheet with id= 48, first strand: chain 'D' and resid 4520 through 4524 removed outlier: 7.083A pdb=" N PHE D4520 " --> pdb=" O LEU D4562 " (cutoff:3.500A) removed outlier: 3.966A pdb=" N LEU D4562 " --> pdb=" O PHE D4520 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N TYR D4560 " --> pdb=" O LYS D4522 " (cutoff:3.500A) Processing sheet with id= 49, first strand: chain 'F' and resid 47 through 52 removed outlier: 6.043A pdb=" N LYS F 34 " --> pdb=" O THR F 52 " (cutoff:3.500A) removed outlier: 5.950A pdb=" N LEU F 22 " --> pdb=" O LEU F 37 " (cutoff:3.500A) removed outlier: 10.649A pdb=" N ALA F 39 " --> pdb=" O VAL F 20 " (cutoff:3.500A) removed outlier: 13.358A pdb=" N VAL F 20 " --> pdb=" O ALA F 39 " (cutoff:3.500A) removed outlier: 6.792A pdb=" N GLU F 19 " --> pdb=" O ILE F 217 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N ALA F 215 " --> pdb=" O VAL F 21 " (cutoff:3.500A) Processing sheet with id= 50, first strand: chain 'F' and resid 67 through 70 removed outlier: 6.481A pdb=" N LEU F 120 " --> pdb=" O GLU F 70 " (cutoff:3.500A) removed outlier: 4.131A pdb=" N HIS F 117 " --> pdb=" O ILE F 162 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N HIS F 163 " --> pdb=" O ILE F 182 " (cutoff:3.500A) Processing sheet with id= 51, first strand: chain 'F' and resid 193 through 196 Processing sheet with id= 52, first strand: chain 'F' and resid 244 through 247 Processing sheet with id= 53, first strand: chain 'F' and resid 313 through 318 removed outlier: 3.629A pdb=" N LYS F 304 " --> pdb=" O HIS F 299 " (cutoff:3.500A) removed outlier: 5.148A pdb=" N LEU F 297 " --> pdb=" O LEU F 306 " (cutoff:3.500A) removed outlier: 9.841A pdb=" N LEU F 308 " --> pdb=" O PHE F 295 " (cutoff:3.500A) removed outlier: 13.360A pdb=" N PHE F 295 " --> pdb=" O LEU F 308 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N ARG F 298 " --> pdb=" O ARG F 276 " (cutoff:3.500A) removed outlier: 8.160A pdb=" N LEU F 274 " --> pdb=" O VAL F 300 " (cutoff:3.500A) removed outlier: 4.530A pdb=" N ASP F 232 " --> pdb=" O LEU F 277 " (cutoff:3.500A) removed outlier: 6.742A pdb=" N VAL F 233 " --> pdb=" O SER F 408 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N SER F 406 " --> pdb=" O ARG F 235 " (cutoff:3.500A) Processing sheet with id= 54, first strand: chain 'F' and resid 329 through 332 Processing sheet with id= 55, first strand: chain 'F' and resid 372 through 376 Processing sheet with id= 56, first strand: chain 'F' and resid 644 through 648 removed outlier: 3.574A pdb=" N GLN F 645 " --> pdb=" O HIS F1631 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N SER F1629 " --> pdb=" O ARG F 647 " (cutoff:3.500A) Processing sheet with id= 57, first strand: chain 'F' and resid 652 through 656 removed outlier: 3.500A pdb=" N VAL F 792 " --> pdb=" O MET F 655 " (cutoff:3.500A) removed outlier: 5.511A pdb=" N GLY F 696 " --> pdb=" O VAL F 791 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N HIS F 692 " --> pdb=" O SER F 795 " (cutoff:3.500A) Processing sheet with id= 58, first strand: chain 'F' and resid 753 through 760 removed outlier: 4.156A pdb=" N ASP F 753 " --> pdb=" O VAL F 679 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N GLU F 676 " --> pdb=" O LEU F 803 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N LEU F 803 " --> pdb=" O GLU F 676 " (cutoff:3.500A) removed outlier: 6.290A pdb=" N LYS F 799 " --> pdb=" O ASP F 680 " (cutoff:3.500A) Processing sheet with id= 59, first strand: chain 'F' and resid 850 through 853 removed outlier: 6.797A pdb=" N VAL F1212 " --> pdb=" O VAL F1108 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N GLU F1104 " --> pdb=" O ASN F1216 " (cutoff:3.500A) removed outlier: 5.576A pdb=" N GLY F1099 " --> pdb=" O MET F1168 " (cutoff:3.500A) removed outlier: 6.013A pdb=" N PHE F1105 " --> pdb=" O VAL F1162 " (cutoff:3.500A) removed outlier: 5.027A pdb=" N GLY F1163 " --> pdb=" O THR F1176 " (cutoff:3.500A) removed outlier: 4.165A pdb=" N THR F1172 " --> pdb=" O ASP F1167 " (cutoff:3.500A) Processing sheet with id= 60, first strand: chain 'F' and resid 1085 through 1090 removed outlier: 3.572A pdb=" N ALA F1090 " --> pdb=" O PRO F1203 " (cutoff:3.500A) removed outlier: 3.677A pdb=" N GLY F1208 " --> pdb=" O ASP F1112 " (cutoff:3.500A) removed outlier: 7.355A pdb=" N ASP F1112 " --> pdb=" O GLY F1208 " (cutoff:3.500A) removed outlier: 5.079A pdb=" N ALA F1142 " --> pdb=" O TYR F1152 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N HIS F1146 " --> pdb=" O GLY F1148 " (cutoff:3.500A) Processing sheet with id= 61, first strand: chain 'F' and resid 1256 through 1260 removed outlier: 3.798A pdb=" N LEU F1595 " --> pdb=" O PHE F1301 " (cutoff:3.500A) removed outlier: 6.159A pdb=" N PHE F1301 " --> pdb=" O LEU F1595 " (cutoff:3.500A) removed outlier: 9.013A pdb=" N SER F1597 " --> pdb=" O ILE F1299 " (cutoff:3.500A) removed outlier: 13.049A pdb=" N ILE F1299 " --> pdb=" O SER F1597 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N LEU F1304 " --> pdb=" O PRO F1541 " (cutoff:3.500A) removed outlier: 6.129A pdb=" N ASN F1440 " --> pdb=" O GLN F1546 " (cutoff:3.500A) Processing sheet with id= 62, first strand: chain 'F' and resid 1268 through 1274 removed outlier: 4.528A pdb=" N GLU F1269 " --> pdb=" O GLY F1291 " (cutoff:3.500A) removed outlier: 4.482A pdb=" N GLY F1291 " --> pdb=" O GLU F1269 " (cutoff:3.500A) removed outlier: 3.939A pdb=" N SER F1289 " --> pdb=" O THR F1271 " (cutoff:3.500A) removed outlier: 3.897A pdb=" N ILE F1273 " --> pdb=" O GLN F1287 " (cutoff:3.500A) removed outlier: 8.967A pdb=" N VAL F1552 " --> pdb=" O PHE F1433 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N PHE F1433 " --> pdb=" O VAL F1552 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N GLU F1556 " --> pdb=" O SER F1429 " (cutoff:3.500A) removed outlier: 6.596A pdb=" N SER F1429 " --> pdb=" O GLU F1556 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N TYR F1426 " --> pdb=" O VAL F1510 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N VAL F1510 " --> pdb=" O TYR F1426 " (cutoff:3.500A) removed outlier: 4.500A pdb=" N TYR F1428 " --> pdb=" O GLY F1508 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N GLY F1508 " --> pdb=" O TYR F1428 " (cutoff:3.500A) removed outlier: 4.213A pdb=" N VAL F1430 " --> pdb=" O GLU F1506 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N GLU F1506 " --> pdb=" O VAL F1430 " (cutoff:3.500A) removed outlier: 6.096A pdb=" N ASN F1502 " --> pdb=" O PRO F1434 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N CYS F1509 " --> pdb=" O THR F1519 " (cutoff:3.500A) removed outlier: 4.563A pdb=" N LEU F1517 " --> pdb=" O VAL F1511 " (cutoff:3.500A) Processing sheet with id= 63, first strand: chain 'F' and resid 1307 through 1310 No H-bonds generated for sheet with id= 63 Processing sheet with id= 64, first strand: chain 'F' and resid 1609 through 1614 removed outlier: 8.056A pdb=" N SER F1609 " --> pdb=" O LEU F1622 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N LEU F1622 " --> pdb=" O SER F1609 " (cutoff:3.500A) removed outlier: 4.498A pdb=" N LEU F1618 " --> pdb=" O GLU F1613 " (cutoff:3.500A) Processing sheet with id= 65, first strand: chain 'F' and resid 1726 through 1729 Processing sheet with id= 66, first strand: chain 'F' and resid 2742 through 2745 Processing sheet with id= 67, first strand: chain 'F' and resid 4133 through 4140 removed outlier: 5.635A pdb=" N PHE F4133 " --> pdb=" O ILE F4153 " (cutoff:3.500A) Processing sheet with id= 68, first strand: chain 'F' and resid 4520 through 4524 removed outlier: 7.084A pdb=" N PHE F4520 " --> pdb=" O LEU F4562 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N LEU F4562 " --> pdb=" O PHE F4520 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N TYR F4560 " --> pdb=" O LYS F4522 " (cutoff:3.500A) Processing sheet with id= 69, first strand: chain 'H' and resid 47 through 52 removed outlier: 6.043A pdb=" N LYS H 34 " --> pdb=" O THR H 52 " (cutoff:3.500A) removed outlier: 5.950A pdb=" N LEU H 22 " --> pdb=" O LEU H 37 " (cutoff:3.500A) removed outlier: 10.651A pdb=" N ALA H 39 " --> pdb=" O VAL H 20 " (cutoff:3.500A) removed outlier: 13.358A pdb=" N VAL H 20 " --> pdb=" O ALA H 39 " (cutoff:3.500A) removed outlier: 6.792A pdb=" N GLU H 19 " --> pdb=" O ILE H 217 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N ALA H 215 " --> pdb=" O VAL H 21 " (cutoff:3.500A) Processing sheet with id= 70, first strand: chain 'H' and resid 67 through 70 removed outlier: 6.480A pdb=" N LEU H 120 " --> pdb=" O GLU H 70 " (cutoff:3.500A) removed outlier: 4.130A pdb=" N HIS H 117 " --> pdb=" O ILE H 162 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N HIS H 163 " --> pdb=" O ILE H 182 " (cutoff:3.500A) Processing sheet with id= 71, first strand: chain 'H' and resid 193 through 196 Processing sheet with id= 72, first strand: chain 'H' and resid 244 through 247 Processing sheet with id= 73, first strand: chain 'H' and resid 313 through 318 removed outlier: 3.628A pdb=" N LYS H 304 " --> pdb=" O HIS H 299 " (cutoff:3.500A) removed outlier: 5.149A pdb=" N LEU H 297 " --> pdb=" O LEU H 306 " (cutoff:3.500A) removed outlier: 9.841A pdb=" N LEU H 308 " --> pdb=" O PHE H 295 " (cutoff:3.500A) removed outlier: 13.360A pdb=" N PHE H 295 " --> pdb=" O LEU H 308 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N ARG H 298 " --> pdb=" O ARG H 276 " (cutoff:3.500A) removed outlier: 8.160A pdb=" N LEU H 274 " --> pdb=" O VAL H 300 " (cutoff:3.500A) removed outlier: 4.530A pdb=" N ASP H 232 " --> pdb=" O LEU H 277 " (cutoff:3.500A) removed outlier: 6.742A pdb=" N VAL H 233 " --> pdb=" O SER H 408 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N SER H 406 " --> pdb=" O ARG H 235 " (cutoff:3.500A) Processing sheet with id= 74, first strand: chain 'H' and resid 329 through 332 Processing sheet with id= 75, first strand: chain 'H' and resid 372 through 376 Processing sheet with id= 76, first strand: chain 'H' and resid 644 through 648 removed outlier: 3.575A pdb=" N GLN H 645 " --> pdb=" O HIS H1631 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N SER H1629 " --> pdb=" O ARG H 647 " (cutoff:3.500A) Processing sheet with id= 77, first strand: chain 'H' and resid 652 through 656 removed outlier: 3.501A pdb=" N VAL H 792 " --> pdb=" O MET H 655 " (cutoff:3.500A) removed outlier: 5.511A pdb=" N GLY H 696 " --> pdb=" O VAL H 791 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N HIS H 692 " --> pdb=" O SER H 795 " (cutoff:3.500A) Processing sheet with id= 78, first strand: chain 'H' and resid 753 through 760 removed outlier: 4.156A pdb=" N ASP H 753 " --> pdb=" O VAL H 679 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N GLU H 676 " --> pdb=" O LEU H 803 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N LEU H 803 " --> pdb=" O GLU H 676 " (cutoff:3.500A) removed outlier: 6.290A pdb=" N LYS H 799 " --> pdb=" O ASP H 680 " (cutoff:3.500A) Processing sheet with id= 79, first strand: chain 'H' and resid 850 through 853 removed outlier: 6.797A pdb=" N VAL H1212 " --> pdb=" O VAL H1108 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N GLU H1104 " --> pdb=" O ASN H1216 " (cutoff:3.500A) removed outlier: 5.575A pdb=" N GLY H1099 " --> pdb=" O MET H1168 " (cutoff:3.500A) removed outlier: 6.013A pdb=" N PHE H1105 " --> pdb=" O VAL H1162 " (cutoff:3.500A) removed outlier: 5.027A pdb=" N GLY H1163 " --> pdb=" O THR H1176 " (cutoff:3.500A) removed outlier: 4.165A pdb=" N THR H1172 " --> pdb=" O ASP H1167 " (cutoff:3.500A) Processing sheet with id= 80, first strand: chain 'H' and resid 1085 through 1090 removed outlier: 3.572A pdb=" N ALA H1090 " --> pdb=" O PRO H1203 " (cutoff:3.500A) removed outlier: 3.677A pdb=" N GLY H1208 " --> pdb=" O ASP H1112 " (cutoff:3.500A) removed outlier: 7.355A pdb=" N ASP H1112 " --> pdb=" O GLY H1208 " (cutoff:3.500A) removed outlier: 5.079A pdb=" N ALA H1142 " --> pdb=" O TYR H1152 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N HIS H1146 " --> pdb=" O GLY H1148 " (cutoff:3.500A) Processing sheet with id= 81, first strand: chain 'H' and resid 1256 through 1260 removed outlier: 3.798A pdb=" N LEU H1595 " --> pdb=" O PHE H1301 " (cutoff:3.500A) removed outlier: 6.159A pdb=" N PHE H1301 " --> pdb=" O LEU H1595 " (cutoff:3.500A) removed outlier: 9.013A pdb=" N SER H1597 " --> pdb=" O ILE H1299 " (cutoff:3.500A) removed outlier: 13.049A pdb=" N ILE H1299 " --> pdb=" O SER H1597 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N LEU H1304 " --> pdb=" O PRO H1541 " (cutoff:3.500A) removed outlier: 6.130A pdb=" N ASN H1440 " --> pdb=" O GLN H1546 " (cutoff:3.500A) Processing sheet with id= 82, first strand: chain 'H' and resid 1268 through 1274 removed outlier: 4.529A pdb=" N GLU H1269 " --> pdb=" O GLY H1291 " (cutoff:3.500A) removed outlier: 4.482A pdb=" N GLY H1291 " --> pdb=" O GLU H1269 " (cutoff:3.500A) removed outlier: 3.939A pdb=" N SER H1289 " --> pdb=" O THR H1271 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N ILE H1273 " --> pdb=" O GLN H1287 " (cutoff:3.500A) removed outlier: 8.966A pdb=" N VAL H1552 " --> pdb=" O PHE H1433 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N PHE H1433 " --> pdb=" O VAL H1552 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N GLU H1556 " --> pdb=" O SER H1429 " (cutoff:3.500A) removed outlier: 6.596A pdb=" N SER H1429 " --> pdb=" O GLU H1556 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N TYR H1426 " --> pdb=" O VAL H1510 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N VAL H1510 " --> pdb=" O TYR H1426 " (cutoff:3.500A) removed outlier: 4.501A pdb=" N TYR H1428 " --> pdb=" O GLY H1508 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N GLY H1508 " --> pdb=" O TYR H1428 " (cutoff:3.500A) removed outlier: 4.213A pdb=" N VAL H1430 " --> pdb=" O GLU H1506 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N GLU H1506 " --> pdb=" O VAL H1430 " (cutoff:3.500A) removed outlier: 6.095A pdb=" N ASN H1502 " --> pdb=" O PRO H1434 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N CYS H1509 " --> pdb=" O THR H1519 " (cutoff:3.500A) removed outlier: 4.563A pdb=" N LEU H1517 " --> pdb=" O VAL H1511 " (cutoff:3.500A) Processing sheet with id= 83, first strand: chain 'H' and resid 1307 through 1310 No H-bonds generated for sheet with id= 83 Processing sheet with id= 84, first strand: chain 'H' and resid 1609 through 1614 removed outlier: 8.057A pdb=" N SER H1609 " --> pdb=" O LEU H1622 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N LEU H1622 " --> pdb=" O SER H1609 " (cutoff:3.500A) removed outlier: 4.498A pdb=" N LEU H1618 " --> pdb=" O GLU H1613 " (cutoff:3.500A) Processing sheet with id= 85, first strand: chain 'H' and resid 1726 through 1729 Processing sheet with id= 86, first strand: chain 'H' and resid 2742 through 2745 Processing sheet with id= 87, first strand: chain 'H' and resid 4133 through 4140 removed outlier: 5.634A pdb=" N PHE H4133 " --> pdb=" O ILE H4153 " (cutoff:3.500A) Processing sheet with id= 88, first strand: chain 'H' and resid 4520 through 4524 removed outlier: 7.084A pdb=" N PHE H4520 " --> pdb=" O LEU H4562 " (cutoff:3.500A) removed outlier: 3.966A pdb=" N LEU H4562 " --> pdb=" O PHE H4520 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N TYR H4560 " --> pdb=" O LYS H4522 " (cutoff:3.500A) 5651 hydrogen bonds defined for protein. 16833 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 0 hydrogen bonds 0 hydrogen bond angles 0 basepair planarities 0 basepair parallelities 0 stacking parallelities Total time for adding SS restraints: 67.52 Time building geometry restraints manager: 34.44 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.22 - 1.34: 35130 1.34 - 1.46: 22021 1.46 - 1.58: 52769 1.58 - 1.70: 20 1.70 - 1.82: 1016 Bond restraints: 110956 Sorted by residual: bond pdb=" C4 ATP D5101 " pdb=" C5 ATP D5101 " ideal model delta sigma weight residual 1.388 1.462 -0.074 1.00e-02 1.00e+04 5.55e+01 bond pdb=" C4 ATP H5101 " pdb=" C5 ATP H5101 " ideal model delta sigma weight residual 1.388 1.462 -0.074 1.00e-02 1.00e+04 5.55e+01 bond pdb=" C4 ATP B5101 " pdb=" C5 ATP B5101 " ideal model delta sigma weight residual 1.388 1.462 -0.074 1.00e-02 1.00e+04 5.50e+01 bond pdb=" C4 ATP F5101 " pdb=" C5 ATP F5101 " ideal model delta sigma weight residual 1.388 1.462 -0.074 1.00e-02 1.00e+04 5.47e+01 bond pdb=" C5 ATP B5101 " pdb=" C6 ATP B5101 " ideal model delta sigma weight residual 1.409 1.477 -0.068 1.00e-02 1.00e+04 4.65e+01 ... (remaining 110951 not shown) Histogram of bond angle deviations from ideal: 97.85 - 105.87: 2218 105.87 - 113.88: 63138 113.88 - 121.90: 61269 121.90 - 129.92: 22595 129.92 - 137.93: 840 Bond angle restraints: 150060 Sorted by residual: angle pdb=" PB ATP F5101 " pdb=" O3B ATP F5101 " pdb=" PG ATP F5101 " ideal model delta sigma weight residual 139.87 121.34 18.53 1.00e+00 1.00e+00 3.43e+02 angle pdb=" PB ATP H5101 " pdb=" O3B ATP H5101 " pdb=" PG ATP H5101 " ideal model delta sigma weight residual 139.87 121.34 18.53 1.00e+00 1.00e+00 3.43e+02 angle pdb=" PB ATP D5101 " pdb=" O3B ATP D5101 " pdb=" PG ATP D5101 " ideal model delta sigma weight residual 139.87 121.35 18.52 1.00e+00 1.00e+00 3.43e+02 angle pdb=" PB ATP B5101 " pdb=" O3B ATP B5101 " pdb=" PG ATP B5101 " ideal model delta sigma weight residual 139.87 121.35 18.52 1.00e+00 1.00e+00 3.43e+02 angle pdb=" PA ATP H5101 " pdb=" O3A ATP H5101 " pdb=" PB ATP H5101 " ideal model delta sigma weight residual 136.83 121.75 15.08 1.00e+00 1.00e+00 2.28e+02 ... (remaining 150055 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 17.15: 62504 17.15 - 34.30: 2983 34.30 - 51.45: 579 51.45 - 68.60: 52 68.60 - 85.75: 88 Dihedral angle restraints: 66206 sinusoidal: 25046 harmonic: 41160 Sorted by residual: dihedral pdb=" CA GLU D1847 " pdb=" C GLU D1847 " pdb=" N PRO D1848 " pdb=" CA PRO D1848 " ideal model delta harmonic sigma weight residual -180.00 -110.47 -69.53 0 5.00e+00 4.00e-02 1.93e+02 dihedral pdb=" CA GLU B1847 " pdb=" C GLU B1847 " pdb=" N PRO B1848 " pdb=" CA PRO B1848 " ideal model delta harmonic sigma weight residual -180.00 -110.49 -69.51 0 5.00e+00 4.00e-02 1.93e+02 dihedral pdb=" CA GLU H1847 " pdb=" C GLU H1847 " pdb=" N PRO H1848 " pdb=" CA PRO H1848 " ideal model delta harmonic sigma weight residual -180.00 -110.50 -69.50 0 5.00e+00 4.00e-02 1.93e+02 ... (remaining 66203 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.088: 15136 0.088 - 0.175: 1669 0.175 - 0.263: 111 0.263 - 0.350: 4 0.350 - 0.438: 8 Chirality restraints: 16928 Sorted by residual: chirality pdb=" CA TYR F2039 " pdb=" N TYR F2039 " pdb=" C TYR F2039 " pdb=" CB TYR F2039 " both_signs ideal model delta sigma weight residual False 2.51 2.07 0.44 2.00e-01 2.50e+01 4.79e+00 chirality pdb=" CA TYR B2039 " pdb=" N TYR B2039 " pdb=" C TYR B2039 " pdb=" CB TYR B2039 " both_signs ideal model delta sigma weight residual False 2.51 2.08 0.43 2.00e-01 2.50e+01 4.73e+00 chirality pdb=" CA TYR H2039 " pdb=" N TYR H2039 " pdb=" C TYR H2039 " pdb=" CB TYR H2039 " both_signs ideal model delta sigma weight residual False 2.51 2.08 0.43 2.00e-01 2.50e+01 4.72e+00 ... (remaining 16925 not shown) Planarity restraints: 19296 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" C SER D2232 " 0.067 5.00e-02 4.00e+02 1.03e-01 1.68e+01 pdb=" N PRO D2233 " -0.178 5.00e-02 4.00e+02 pdb=" CA PRO D2233 " 0.053 5.00e-02 4.00e+02 pdb=" CD PRO D2233 " 0.057 5.00e-02 4.00e+02 delta sigma weight rms_deltas residual plane pdb=" C SER H2232 " 0.067 5.00e-02 4.00e+02 1.03e-01 1.68e+01 pdb=" N PRO H2233 " -0.177 5.00e-02 4.00e+02 pdb=" CA PRO H2233 " 0.053 5.00e-02 4.00e+02 pdb=" CD PRO H2233 " 0.057 5.00e-02 4.00e+02 delta sigma weight rms_deltas residual plane pdb=" C SER B2232 " 0.067 5.00e-02 4.00e+02 1.02e-01 1.68e+01 pdb=" N PRO B2233 " -0.177 5.00e-02 4.00e+02 pdb=" CA PRO B2233 " 0.053 5.00e-02 4.00e+02 pdb=" CD PRO B2233 " 0.057 5.00e-02 4.00e+02 ... (remaining 19293 not shown) Histogram of nonbonded interaction distances: 2.20 - 2.74: 8639 2.74 - 3.28: 112711 3.28 - 3.82: 190921 3.82 - 4.36: 219983 4.36 - 4.90: 354054 Nonbonded interactions: 886308 Sorted by model distance: nonbonded pdb=" N CYS H4892 " pdb="ZN ZN H5102 " model vdw 2.197 2.310 nonbonded pdb=" N CYS F4892 " pdb="ZN ZN F5102 " model vdw 2.197 2.310 nonbonded pdb=" N CYS B4892 " pdb="ZN ZN B5102 " model vdw 2.197 2.310 nonbonded pdb=" N CYS D4892 " pdb="ZN ZN D5102 " model vdw 2.197 2.310 nonbonded pdb=" OG SER F2779 " pdb=" OH TYR F2849 " model vdw 2.218 2.440 ... (remaining 886303 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model Found NCS groups: ncs_group { reference = chain 'A' selection = chain 'C' selection = chain 'E' selection = chain 'G' } ncs_group { reference = chain 'B' selection = chain 'D' selection = chain 'F' selection = chain 'H' } Set up NCS constraints Number of NCS constrained groups: 2 pdb_interpretation.ncs_group { reference = chain 'A' selection = chain 'C' selection = chain 'E' selection = chain 'G' } pdb_interpretation.ncs_group { reference = chain 'B' selection = chain 'D' selection = chain 'F' selection = chain 'H' } Set refine NCS operators NCS operators will be refined. Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=0.99 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as group one per residue Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 2.260 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.000 Assert all atoms have isotropic ADPs: 0.000 Construct map_model_manager: 0.060 Extract box with map and model: 17.220 Check model and map are aligned: 1.180 Set scattering table: 0.730 Process input model: 261.060 Find NCS groups from input model: 5.510 Set up NCS constraints: 0.490 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.030 Extract rigid body selections: 0.000 Check and reset occupancies: 0.010 Load rotamer database and sin/cos tables:2.320 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 290.870 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.8050 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.006 0.074 110956 Z= 0.371 Angle : 1.072 18.533 150060 Z= 0.596 Chirality : 0.055 0.438 16928 Planarity : 0.007 0.103 19296 Dihedral : 11.439 85.753 39510 Min Nonbonded Distance : 2.197 Molprobity Statistics. All-atom Clashscore : 12.11 Ramachandran Plot: Outliers : 0.26 % Allowed : 10.80 % Favored : 88.94 % Rotamer: Outliers : 0.58 % Allowed : 3.46 % Favored : 95.95 % Cbeta Deviations : 0.01 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.39 % Twisted Proline : 3.25 % Twisted General : 0.50 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -4.03 (0.06), residues: 13748 helix: -1.99 (0.05), residues: 6916 sheet: -3.34 (0.14), residues: 988 loop : -3.35 (0.07), residues: 5844 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.036 0.003 TRP H4950 HIS 0.017 0.003 HIS F 651 PHE 0.038 0.003 PHE F3791 TYR 0.035 0.003 TYR F4782 ARG 0.013 0.001 ARG F1920 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 27496 Ramachandran restraints generated. 13748 Oldfield, 0 Emsley, 13748 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 27496 Ramachandran restraints generated. 13748 Oldfield, 0 Emsley, 13748 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 29 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 29 time to evaluate : 0.074 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash REVERT: A 59 PHE cc_start: 0.9157 (t80) cc_final: 0.8332 (t80) outliers start: 0 outliers final: 0 residues processed: 29 average time/residue: 0.1893 time to fit residues: 5.7676 Evaluate side-chains 9 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 9 time to evaluate : 0.073 Evaluate side-chains 611 residues out of total 3039 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 16 poor density : 595 time to evaluate : 2.232 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash Traceback (most recent call last): File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/build/../modules/phenix/phenix/command_line/real_space_refine.py", line 8, in run_program(real_space_refine.Program) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/iotbx/cli_parser.py", line 931, in run_program task.run() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/programs/real_space_refine.py", line 191, in run log = self.logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/rsr/wrappers.py", line 58, in __init__ log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 303, in __init__ self.caller(self.optimize_sidechains) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 321, in caller func() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 609, in optimize_sidechains log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 91, in __init__ rotatable_hd = self.rotatable_hd.select(g.master_iselection)) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 189, in run_one pdb_hierarchy = self.run_one_one(args=args) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 133, in run_one_one log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 108, in __init__ self.loop(function = self.one_residue_iteration) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 284, in loop function(residue = residue) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 271, in one_residue_iteration log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 172, in __init__ self.fit_proline() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 217, in fit_proline for rotamer, sites_cart in rotamer_iterator: TypeError: 'NoneType' object is not iterable