Starting phenix.real_space_refine on Mon Mar 11 08:40:00 2024 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ji0_9831/03_2024/6ji0_9831_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ji0_9831/03_2024/6ji0_9831.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=4.2 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ji0_9831/03_2024/6ji0_9831.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ji0_9831/03_2024/6ji0_9831.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ji0_9831/03_2024/6ji0_9831_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ji0_9831/03_2024/6ji0_9831_updated.pdb" } resolution = 4.2 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= 0.001 sd= 0.005 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 7 Type Number sf(0) Gaussians Ca 4 9.91 5 Zn 4 6.06 5 P 12 5.49 5 S 648 5.16 5 C 69832 2.51 5 N 18796 2.21 5 O 20476 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "A ARG 190": "NH1" <-> "NH2" Residue "A ARG 257": "NH1" <-> "NH2" Residue "A ARG 606": "NH1" <-> "NH2" Residue "A ARG 640": "NH1" <-> "NH2" Residue "A PHE 782": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 2039": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 2145": "NH1" <-> "NH2" Residue "A ARG 2298": "NH1" <-> "NH2" Residue "A ARG 2323": "NH1" <-> "NH2" Residue "A ARG 2519": "NH1" <-> "NH2" Residue "A ARG 3616": "NH1" <-> "NH2" Residue "A TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 3731": "NH1" <-> "NH2" Residue "A ARG 4148": "NH1" <-> "NH2" Residue "A GLU 4185": "OE1" <-> "OE2" Residue "A ARG 4498": "NH1" <-> "NH2" Residue "A ARG 4504": "NH1" <-> "NH2" Residue "A TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4652": "NH1" <-> "NH2" Residue "A ARG 4791": "NH1" <-> "NH2" Residue "B ARG 13": "NH1" <-> "NH2" Residue "C ARG 190": "NH1" <-> "NH2" Residue "C ARG 257": "NH1" <-> "NH2" Residue "C ARG 606": "NH1" <-> "NH2" Residue "C ARG 640": "NH1" <-> "NH2" Residue "C PHE 782": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 2039": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 2145": "NH1" <-> "NH2" Residue "C ARG 2298": "NH1" <-> "NH2" Residue "C ARG 2323": "NH1" <-> "NH2" Residue "C ARG 2519": "NH1" <-> "NH2" Residue "C ARG 3616": "NH1" <-> "NH2" Residue "C TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 3731": "NH1" <-> "NH2" Residue "C ARG 4148": "NH1" <-> "NH2" Residue "C ARG 4498": "NH1" <-> "NH2" Residue "C ARG 4504": "NH1" <-> "NH2" Residue "C TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 4652": "NH1" <-> "NH2" Residue "C ARG 4791": "NH1" <-> "NH2" Residue "D ARG 13": "NH1" <-> "NH2" Residue "E ARG 190": "NH1" <-> "NH2" Residue "E ARG 257": "NH1" <-> "NH2" Residue "E ARG 606": "NH1" <-> "NH2" Residue "E ARG 640": "NH1" <-> "NH2" Residue "E PHE 782": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 2039": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 2145": "NH1" <-> "NH2" Residue "E ARG 2298": "NH1" <-> "NH2" Residue "E ARG 2323": "NH1" <-> "NH2" Residue "E ARG 2519": "NH1" <-> "NH2" Residue "E ARG 3616": "NH1" <-> "NH2" Residue "E TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 3731": "NH1" <-> "NH2" Residue "E ARG 4148": "NH1" <-> "NH2" Residue "E GLU 4185": "OE1" <-> "OE2" Residue "E ARG 4498": "NH1" <-> "NH2" Residue "E ARG 4504": "NH1" <-> "NH2" Residue "E TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4652": "NH1" <-> "NH2" Residue "E ARG 4791": "NH1" <-> "NH2" Residue "F ARG 13": "NH1" <-> "NH2" Residue "G ARG 190": "NH1" <-> "NH2" Residue "G ARG 257": "NH1" <-> "NH2" Residue "G ARG 606": "NH1" <-> "NH2" Residue "G ARG 640": "NH1" <-> "NH2" Residue "G PHE 782": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 2039": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 2145": "NH1" <-> "NH2" Residue "G ARG 2298": "NH1" <-> "NH2" Residue "G ARG 2323": "NH1" <-> "NH2" Residue "G ARG 2519": "NH1" <-> "NH2" Residue "G ARG 3616": "NH1" <-> "NH2" Residue "G TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 3731": "NH1" <-> "NH2" Residue "G ARG 4148": "NH1" <-> "NH2" Residue "G ARG 4498": "NH1" <-> "NH2" Residue "G ARG 4504": "NH1" <-> "NH2" Residue "G TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4652": "NH1" <-> "NH2" Residue "G ARG 4791": "NH1" <-> "NH2" Residue "H ARG 13": "NH1" <-> "NH2" Time to flip residues: 0.25s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/chem_data/mon_lib" Total number of atoms: 109772 Number of models: 1 Model: "" Number of chains: 12 Chain: "A" Number of atoms: 26577 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3476, 26577 Classifications: {'peptide': 3476} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 331} Link IDs: {'CIS': 14, 'PTRANS': 116, 'TRANS': 3345} Chain breaks: 59 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1384 Unresolved non-hydrogen angles: 1762 Unresolved non-hydrogen dihedrals: 1155 Unresolved non-hydrogen chiralities: 118 Planarities with less than four sites: {'GLN:plan1': 16, 'HIS:plan': 19, 'TYR:plan': 15, 'ASN:plan1': 15, 'TRP:plan': 2, 'ASP:plan': 21, 'PHE:plan': 19, 'GLU:plan': 32, 'ARG:plan': 32} Unresolved non-hydrogen planarities: 771 Chain: "B" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "C" Number of atoms: 26577 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3476, 26577 Classifications: {'peptide': 3476} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 331} Link IDs: {'CIS': 14, 'PTRANS': 116, 'TRANS': 3345} Chain breaks: 59 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1384 Unresolved non-hydrogen angles: 1762 Unresolved non-hydrogen dihedrals: 1156 Unresolved non-hydrogen chiralities: 118 Planarities with less than four sites: {'GLN:plan1': 16, 'HIS:plan': 19, 'TYR:plan': 15, 'ASN:plan1': 15, 'TRP:plan': 2, 'ASP:plan': 21, 'PHE:plan': 19, 'GLU:plan': 32, 'ARG:plan': 32} Unresolved non-hydrogen planarities: 771 Chain: "D" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "E" Number of atoms: 26577 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3476, 26577 Classifications: {'peptide': 3476} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 331} Link IDs: {'CIS': 14, 'PTRANS': 116, 'TRANS': 3345} Chain breaks: 59 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1384 Unresolved non-hydrogen angles: 1762 Unresolved non-hydrogen dihedrals: 1154 Unresolved non-hydrogen chiralities: 118 Planarities with less than four sites: {'GLN:plan1': 16, 'HIS:plan': 19, 'TYR:plan': 15, 'ASN:plan1': 15, 'TRP:plan': 2, 'ASP:plan': 21, 'PHE:plan': 19, 'GLU:plan': 32, 'ARG:plan': 32} Unresolved non-hydrogen planarities: 771 Chain: "F" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "G" Number of atoms: 26577 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3476, 26577 Classifications: {'peptide': 3476} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 331} Link IDs: {'CIS': 14, 'PTRANS': 116, 'TRANS': 3345} Chain breaks: 59 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1384 Unresolved non-hydrogen angles: 1762 Unresolved non-hydrogen dihedrals: 1155 Unresolved non-hydrogen chiralities: 118 Planarities with less than four sites: {'GLN:plan1': 16, 'HIS:plan': 19, 'TYR:plan': 15, 'ASN:plan1': 15, 'TRP:plan': 2, 'ASP:plan': 21, 'PHE:plan': 19, 'GLU:plan': 32, 'ARG:plan': 32} Unresolved non-hydrogen planarities: 771 Chain: "H" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "A" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "C" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "E" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "G" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} List of CYS excluded from plausible disulfide bonds: (reason: may participate in coordination) ATOM 25949 SG CYS A4889 205.001 203.961 86.283 1.00 73.44 S ATOM 25974 SG CYS A4892 204.218 203.878 90.251 1.00 70.79 S ATOM 53345 SG CYS C4889 203.965 174.683 86.280 1.00 73.44 S ATOM 53370 SG CYS C4892 203.882 175.465 90.248 1.00 70.79 S ATOM 80741 SG CYS E4889 174.684 175.718 86.278 1.00 73.44 S ATOM 80766 SG CYS E4892 175.468 175.801 90.246 1.00 70.79 S ATOM A06A1 SG CYS G4889 175.716 205.006 86.283 1.00 73.44 S ATOM A06AQ SG CYS G4892 175.799 204.223 90.251 1.00 70.79 S Residues with excluded nonbonded symmetry interactions: 4 residue: pdb=" N HIS B 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS B 87 " occ=0.99 residue: pdb=" N HIS D 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS D 87 " occ=0.99 residue: pdb=" N HIS F 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS F 87 " occ=0.99 residue: pdb=" N HIS H 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS H 87 " occ=0.99 Time building chain proxies: 41.03, per 1000 atoms: 0.37 Number of scatterers: 109772 At special positions: 0 Unit cell: (380.759, 380.759, 211.654, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 7 Type Number sf(0) Zn 4 29.99 Ca 4 19.99 S 648 16.00 P 12 15.00 O 20476 8.00 N 18796 7.00 C 69832 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=0, symmetry=0 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=0, symmetry=0 Time building additional restraints: 30.21 Conformation dependent library (CDL) restraints added in 14.8 seconds Dynamic metal coordination Zn2+ tetrahedral coordination pdb=" ZN A5100 " pdb="ZN ZN A5100 " - pdb=" NE2 HIS A4909 " pdb="ZN ZN A5100 " - pdb=" SG CYS A4892 " pdb="ZN ZN A5100 " - pdb=" SG CYS A4889 " pdb=" ZN C5100 " pdb="ZN ZN C5100 " - pdb=" NE2 HIS C4909 " pdb="ZN ZN C5100 " - pdb=" SG CYS C4892 " pdb="ZN ZN C5100 " - pdb=" SG CYS C4889 " pdb=" ZN E5100 " pdb="ZN ZN E5100 " - pdb=" NE2 HIS E4909 " pdb="ZN ZN E5100 " - pdb=" SG CYS E4892 " pdb="ZN ZN E5100 " - pdb=" SG CYS E4889 " pdb=" ZN G5100 " pdb="ZN ZN G5100 " - pdb=" NE2 HIS G4909 " pdb="ZN ZN G5100 " - pdb=" SG CYS G4892 " pdb="ZN ZN G5100 " - pdb=" SG CYS G4889 " 27688 Ramachandran restraints generated. 13844 Oldfield, 0 Emsley, 13844 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 26856 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 532 helices and 72 sheets defined 56.8% alpha, 7.9% beta 0 base pairs and 0 stacking pairs defined. Time for finding SS restraints: 26.99 Creating SS restraints... Processing helix chain 'A' and resid 61 through 66 removed outlier: 5.462A pdb=" N CYS A 65 " --> pdb=" O ASP A 61 " (cutoff:3.500A) removed outlier: 4.081A pdb=" N THR A 66 " --> pdb=" O LEU A 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 61 through 66' Processing helix chain 'A' and resid 74 through 85 removed outlier: 3.737A pdb=" N LEU A 78 " --> pdb=" O SER A 74 " (cutoff:3.500A) removed outlier: 5.360A pdb=" N THR A 85 " --> pdb=" O MET A 81 " (cutoff:3.500A) Processing helix chain 'A' and resid 266 through 271 removed outlier: 5.117A pdb=" N ALA A 271 " --> pdb=" O VAL A 267 " (cutoff:3.500A) Processing helix chain 'A' and resid 409 through 439 removed outlier: 3.698A pdb=" N SER A 413 " --> pdb=" O GLN A 409 " (cutoff:3.500A) removed outlier: 4.858A pdb=" N VAL A 418 " --> pdb=" O ARG A 414 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N LEU A 436 " --> pdb=" O GLY A 432 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N SER A 437 " --> pdb=" O LEU A 433 " (cutoff:3.500A) removed outlier: 4.920A pdb=" N LYS A 438 " --> pdb=" O ASP A 434 " (cutoff:3.500A) removed outlier: 3.785A pdb=" N LYS A 439 " --> pdb=" O ALA A 435 " (cutoff:3.500A) Processing helix chain 'A' and resid 448 through 464 removed outlier: 4.813A pdb=" N VAL A 452 " --> pdb=" O PRO A 448 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N HIS A 464 " --> pdb=" O ILE A 460 " (cutoff:3.500A) Processing helix chain 'A' and resid 471 through 493 removed outlier: 3.507A pdb=" N PHE A 489 " --> pdb=" O ARG A 485 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N GLU A 491 " --> pdb=" O ASN A 487 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N GLU A 492 " --> pdb=" O LEU A 488 " (cutoff:3.500A) Processing helix chain 'A' and resid 494 through 506 Processing helix chain 'A' and resid 519 through 542 removed outlier: 3.982A pdb=" N GLY A 523 " --> pdb=" O GLY A 519 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N GLU A 524 " --> pdb=" O ARG A 520 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N TRP A 526 " --> pdb=" O ALA A 522 " (cutoff:3.500A) removed outlier: 5.932A pdb=" N LYS A 527 " --> pdb=" O GLY A 523 " (cutoff:3.500A) removed outlier: 5.611A pdb=" N SER A 528 " --> pdb=" O GLU A 524 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N ILE A 541 " --> pdb=" O LEU A 537 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N ARG A 542 " --> pdb=" O ALA A 538 " (cutoff:3.500A) Processing helix chain 'A' and resid 544 through 552 removed outlier: 3.860A pdb=" N CYS A 548 " --> pdb=" O ASN A 544 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N SER A 552 " --> pdb=" O CYS A 548 " (cutoff:3.500A) Processing helix chain 'A' and resid 554 through 563 removed outlier: 4.381A pdb=" N GLU A 563 " --> pdb=" O ILE A 559 " (cutoff:3.500A) Processing helix chain 'A' and resid 567 through 582 removed outlier: 3.918A pdb=" N ILE A 571 " --> pdb=" O ALA A 567 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N GLU A 581 " --> pdb=" O CYS A 577 " (cutoff:3.500A) Processing helix chain 'A' and resid 583 through 589 removed outlier: 4.006A pdb=" N ASN A 587 " --> pdb=" O PRO A 583 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N ILE A 588 " --> pdb=" O GLU A 584 " (cutoff:3.500A) Processing helix chain 'A' and resid 590 through 605 removed outlier: 3.791A pdb=" N LEU A 601 " --> pdb=" O ILE A 597 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ASP A 602 " --> pdb=" O ILE A 598 " (cutoff:3.500A) Processing helix chain 'A' and resid 607 through 620 removed outlier: 3.737A pdb=" N LEU A 611 " --> pdb=" O ASN A 607 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N CYS A 620 " --> pdb=" O SER A 616 " (cutoff:3.500A) Processing helix chain 'A' and resid 625 through 636 Processing helix chain 'A' and resid 699 through 704 removed outlier: 5.050A pdb=" N TYR A 703 " --> pdb=" O SER A 699 " (cutoff:3.500A) removed outlier: 4.826A pdb=" N SER A 704 " --> pdb=" O THR A 700 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 699 through 704' Processing helix chain 'A' and resid 821 through 826 Processing helix chain 'A' and resid 878 through 901 removed outlier: 3.705A pdb=" N LYS A 897 " --> pdb=" O TRP A 893 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N GLU A 899 " --> pdb=" O MET A 895 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LEU A 900 " --> pdb=" O ASN A 896 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N GLY A 901 " --> pdb=" O LYS A 897 " (cutoff:3.500A) Processing helix chain 'A' and resid 929 through 946 removed outlier: 4.365A pdb=" N MET A 935 " --> pdb=" O TYR A 931 " (cutoff:3.500A) removed outlier: 4.135A pdb=" N LEU A 944 " --> pdb=" O LEU A 940 " (cutoff:3.500A) Processing helix chain 'A' and resid 982 through 987 removed outlier: 3.673A pdb=" N ILE A 986 " --> pdb=" O ASP A 982 " (cutoff:3.500A) removed outlier: 5.742A pdb=" N LYS A 987 " --> pdb=" O LEU A 983 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 982 through 987' Processing helix chain 'A' and resid 989 through 1012 removed outlier: 3.917A pdb=" N GLU A 993 " --> pdb=" O THR A 989 " (cutoff:3.500A) Processing helix chain 'A' and resid 1034 through 1039 removed outlier: 5.117A pdb=" N ASP A1039 " --> pdb=" O TYR A1035 " (cutoff:3.500A) Processing helix chain 'A' and resid 1044 through 1061 removed outlier: 3.956A pdb=" N TYR A1060 " --> pdb=" O THR A1056 " (cutoff:3.500A) removed outlier: 4.860A pdb=" N GLY A1061 " --> pdb=" O LEU A1057 " (cutoff:3.500A) Processing helix chain 'A' and resid 1230 through 1235 removed outlier: 6.323A pdb=" N GLU A1234 " --> pdb=" O CYS A1230 " (cutoff:3.500A) Processing helix chain 'A' and resid 1570 through 1576 removed outlier: 4.150A pdb=" N GLU A1574 " --> pdb=" O LEU A1570 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N LYS A1576 " --> pdb=" O LYS A1572 " (cutoff:3.500A) Processing helix chain 'A' and resid 1640 through 1645 removed outlier: 4.430A pdb=" N LEU A1644 " --> pdb=" O ASP A1640 " (cutoff:3.500A) removed outlier: 4.965A pdb=" N THR A1645 " --> pdb=" O ILE A1641 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1640 through 1645' Processing helix chain 'A' and resid 1647 through 1666 removed outlier: 3.726A pdb=" N CYS A1665 " --> pdb=" O TYR A1661 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ALA A1666 " --> pdb=" O SER A1662 " (cutoff:3.500A) Processing helix chain 'A' and resid 1669 through 1681 Processing helix chain 'A' and resid 1682 through 1691 removed outlier: 3.667A pdb=" N GLU A1690 " --> pdb=" O LEU A1686 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N ASN A1691 " --> pdb=" O TYR A1687 " (cutoff:3.500A) Processing helix chain 'A' and resid 1695 through 1710 removed outlier: 3.682A pdb=" N ILE A1707 " --> pdb=" O TYR A1703 " (cutoff:3.500A) Processing helix chain 'A' and resid 1711 through 1722 Processing helix chain 'A' and resid 1730 through 1735 removed outlier: 4.228A pdb=" N LYS A1734 " --> pdb=" O THR A1730 " (cutoff:3.500A) removed outlier: 4.358A pdb=" N SER A1735 " --> pdb=" O GLU A1731 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1730 through 1735' Processing helix chain 'A' and resid 1773 through 1778 removed outlier: 6.141A pdb=" N GLN A1777 " --> pdb=" O ASN A1773 " (cutoff:3.500A) removed outlier: 6.372A pdb=" N TYR A1778 " --> pdb=" O GLU A1774 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1773 through 1778' Processing helix chain 'A' and resid 1783 through 1802 Processing helix chain 'A' and resid 1813 through 1832 Proline residue: A1820 - end of helix removed outlier: 3.689A pdb=" N MET A1831 " --> pdb=" O THR A1827 " (cutoff:3.500A) removed outlier: 4.176A pdb=" N GLY A1832 " --> pdb=" O LEU A1828 " (cutoff:3.500A) Processing helix chain 'A' and resid 1835 through 1848 removed outlier: 3.645A pdb=" N LEU A1839 " --> pdb=" O HIS A1835 " (cutoff:3.500A) Proline residue: A1848 - end of helix Processing helix chain 'A' and resid 1901 through 1945 removed outlier: 4.684A pdb=" N LEU A1909 " --> pdb=" O LEU A1905 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N LEU A1910 " --> pdb=" O GLN A1906 " (cutoff:3.500A) Processing helix chain 'A' and resid 1999 through 2012 removed outlier: 6.440A pdb=" N ASP A2003 " --> pdb=" O ASP A1999 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N LEU A2004 " --> pdb=" O PHE A2000 " (cutoff:3.500A) Processing helix chain 'A' and resid 2024 through 2039 removed outlier: 4.552A pdb=" N TYR A2039 " --> pdb=" O GLU A2035 " (cutoff:3.500A) Processing helix chain 'A' and resid 2058 through 2074 removed outlier: 3.854A pdb=" N LEU A2062 " --> pdb=" O THR A2058 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N SER A2064 " --> pdb=" O GLN A2060 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N GLU A2073 " --> pdb=" O ARG A2069 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SER A2074 " --> pdb=" O TRP A2070 " (cutoff:3.500A) Processing helix chain 'A' and resid 2078 through 2095 removed outlier: 3.914A pdb=" N VAL A2082 " --> pdb=" O ASP A2078 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N GLY A2095 " --> pdb=" O ARG A2091 " (cutoff:3.500A) Processing helix chain 'A' and resid 2096 through 2106 removed outlier: 3.636A pdb=" N LEU A2103 " --> pdb=" O LEU A2099 " (cutoff:3.500A) Proline residue: A2104 - end of helix Processing helix chain 'A' and resid 2113 through 2134 removed outlier: 3.633A pdb=" N THR A2117 " --> pdb=" O SER A2113 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N SER A2132 " --> pdb=" O ARG A2128 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N VAL A2133 " --> pdb=" O SER A2129 " (cutoff:3.500A) removed outlier: 5.797A pdb=" N ARG A2134 " --> pdb=" O LEU A2130 " (cutoff:3.500A) Processing helix chain 'A' and resid 2138 through 2153 removed outlier: 4.735A pdb=" N LEU A2142 " --> pdb=" O GLU A2138 " (cutoff:3.500A) Processing helix chain 'A' and resid 2154 through 2159 removed outlier: 3.801A pdb=" N GLN A2158 " --> pdb=" O LYS A2154 " (cutoff:3.500A) Processing helix chain 'A' and resid 2160 through 2167 removed outlier: 3.692A pdb=" N GLY A2167 " --> pdb=" O MET A2163 " (cutoff:3.500A) Processing helix chain 'A' and resid 2168 through 2181 removed outlier: 4.560A pdb=" N GLY A2181 " --> pdb=" O VAL A2177 " (cutoff:3.500A) Processing helix chain 'A' and resid 2192 through 2207 removed outlier: 3.625A pdb=" N PHE A2200 " --> pdb=" O ASN A2196 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N ARG A2206 " --> pdb=" O CYS A2202 " (cutoff:3.500A) removed outlier: 4.574A pdb=" N ILE A2207 " --> pdb=" O TYR A2203 " (cutoff:3.500A) Processing helix chain 'A' and resid 2208 through 2217 removed outlier: 4.153A pdb=" N ASP A2217 " --> pdb=" O LYS A2213 " (cutoff:3.500A) Processing helix chain 'A' and resid 2218 through 2227 removed outlier: 4.393A pdb=" N SER A2227 " --> pdb=" O LEU A2223 " (cutoff:3.500A) Processing helix chain 'A' and resid 2239 through 2249 removed outlier: 4.149A pdb=" N VAL A2248 " --> pdb=" O ALA A2244 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N MET A2249 " --> pdb=" O ALA A2245 " (cutoff:3.500A) Processing helix chain 'A' and resid 2251 through 2258 Processing helix chain 'A' and resid 2259 through 2271 removed outlier: 4.099A pdb=" N LEU A2263 " --> pdb=" O ARG A2259 " (cutoff:3.500A) removed outlier: 4.569A pdb=" N ALA A2271 " --> pdb=" O VAL A2267 " (cutoff:3.500A) Processing helix chain 'A' and resid 2295 through 2308 removed outlier: 3.831A pdb=" N TYR A2299 " --> pdb=" O GLU A2295 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N PHE A2308 " --> pdb=" O ARG A2304 " (cutoff:3.500A) Processing helix chain 'A' and resid 2314 through 2328 removed outlier: 3.722A pdb=" N ARG A2328 " --> pdb=" O LEU A2324 " (cutoff:3.500A) Processing helix chain 'A' and resid 2343 through 2349 removed outlier: 3.649A pdb=" N ALA A2347 " --> pdb=" O GLY A2343 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N GLU A2349 " --> pdb=" O LEU A2345 " (cutoff:3.500A) Processing helix chain 'A' and resid 2387 through 2403 removed outlier: 4.365A pdb=" N THR A2391 " --> pdb=" O ASN A2387 " (cutoff:3.500A) removed outlier: 3.825A pdb=" N ARG A2402 " --> pdb=" O ASP A2398 " (cutoff:3.500A) removed outlier: 4.812A pdb=" N CYS A2403 " --> pdb=" O LEU A2399 " (cutoff:3.500A) Processing helix chain 'A' and resid 2416 through 2425 removed outlier: 5.400A pdb=" N ILE A2420 " --> pdb=" O GLU A2416 " (cutoff:3.500A) Processing helix chain 'A' and resid 2432 through 2442 removed outlier: 4.138A pdb=" N GLN A2442 " --> pdb=" O SER A2438 " (cutoff:3.500A) Processing helix chain 'A' and resid 2462 through 2477 removed outlier: 4.120A pdb=" N LYS A2466 " --> pdb=" O CYS A2462 " (cutoff:3.500A) removed outlier: 4.695A pdb=" N ALA A2467 " --> pdb=" O PRO A2463 " (cutoff:3.500A) Processing helix chain 'A' and resid 2481 through 2488 removed outlier: 3.955A pdb=" N LEU A2488 " --> pdb=" O PHE A2484 " (cutoff:3.500A) Processing helix chain 'A' and resid 2493 through 2503 removed outlier: 4.344A pdb=" N ALA A2501 " --> pdb=" O LEU A2497 " (cutoff:3.500A) removed outlier: 4.962A pdb=" N SER A2502 " --> pdb=" O ARG A2498 " (cutoff:3.500A) removed outlier: 5.346A pdb=" N LEU A2503 " --> pdb=" O ALA A2499 " (cutoff:3.500A) Processing helix chain 'A' and resid 2511 through 2529 removed outlier: 4.621A pdb=" N ASN A2518 " --> pdb=" O ALA A2514 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N CYS A2522 " --> pdb=" O ASN A2518 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N THR A2523 " --> pdb=" O ARG A2519 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N VAL A2525 " --> pdb=" O LEU A2521 " (cutoff:3.500A) removed outlier: 5.227A pdb=" N LEU A2526 " --> pdb=" O CYS A2522 " (cutoff:3.500A) Proline residue: A2527 - end of helix Processing helix chain 'A' and resid 2536 through 2553 removed outlier: 3.980A pdb=" N LEU A2550 " --> pdb=" O ILE A2546 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N THR A2552 " --> pdb=" O SER A2548 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N VAL A2553 " --> pdb=" O LEU A2549 " (cutoff:3.500A) Processing helix chain 'A' and resid 2558 through 2576 removed outlier: 4.007A pdb=" N LEU A2562 " --> pdb=" O LYS A2558 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N LEU A2575 " --> pdb=" O GLU A2571 " (cutoff:3.500A) removed outlier: 4.064A pdb=" N SER A2576 " --> pdb=" O VAL A2572 " (cutoff:3.500A) Processing helix chain 'A' and resid 2582 through 2601 removed outlier: 3.874A pdb=" N MET A2586 " --> pdb=" O ARG A2582 " (cutoff:3.500A) Proline residue: A2598 - end of helix Processing helix chain 'A' and resid 2605 through 2627 removed outlier: 5.630A pdb=" N LEU A2624 " --> pdb=" O LYS A2620 " (cutoff:3.500A) Proline residue: A2625 - end of helix Processing helix chain 'A' and resid 2634 through 2653 removed outlier: 3.603A pdb=" N GLU A2638 " --> pdb=" O ALA A2634 " (cutoff:3.500A) removed outlier: 3.949A pdb=" N ALA A2652 " --> pdb=" O GLY A2648 " (cutoff:3.500A) removed outlier: 5.530A pdb=" N LEU A2653 " --> pdb=" O ILE A2649 " (cutoff:3.500A) Processing helix chain 'A' and resid 2658 through 2678 Proline residue: A2668 - end of helix Proline residue: A2678 - end of helix Processing helix chain 'A' and resid 2715 through 2741 removed outlier: 3.910A pdb=" N PHE A2721 " --> pdb=" O LYS A2717 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ASN A2740 " --> pdb=" O ASP A2736 " (cutoff:3.500A) Processing helix chain 'A' and resid 2768 through 2787 removed outlier: 3.806A pdb=" N TYR A2772 " --> pdb=" O GLU A2768 " (cutoff:3.500A) Proline residue: A2775 - end of helix removed outlier: 4.701A pdb=" N TRP A2786 " --> pdb=" O THR A2782 " (cutoff:3.500A) removed outlier: 4.628A pdb=" N GLY A2787 " --> pdb=" O MET A2783 " (cutoff:3.500A) Processing helix chain 'A' and resid 2835 through 2865 removed outlier: 3.980A pdb=" N GLU A2862 " --> pdb=" O LYS A2858 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N SER A2863 " --> pdb=" O LEU A2859 " (cutoff:3.500A) removed outlier: 4.747A pdb=" N LYS A2864 " --> pdb=" O GLU A2860 " (cutoff:3.500A) Processing helix chain 'A' and resid 2879 through 2901 removed outlier: 4.130A pdb=" N LYS A2883 " --> pdb=" O THR A2879 " (cutoff:3.500A) removed outlier: 4.761A pdb=" N ILE A2893 " --> pdb=" O LYS A2889 " (cutoff:3.500A) Processing helix chain 'A' and resid 2983 through 3001 removed outlier: 3.909A pdb=" N ALA A2987 " --> pdb=" O PHE A2983 " (cutoff:3.500A) Proline residue: A2990 - end of helix Processing helix chain 'A' and resid 3009 through 3027 removed outlier: 4.397A pdb=" N GLY A3013 " --> pdb=" O PHE A3009 " (cutoff:3.500A) Processing helix chain 'A' and resid 3035 through 3052 Processing helix chain 'A' and resid 3063 through 3082 removed outlier: 3.991A pdb=" N GLU A3070 " --> pdb=" O ALA A3066 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N THR A3082 " --> pdb=" O GLN A3078 " (cutoff:3.500A) Processing helix chain 'A' and resid 3102 through 3117 removed outlier: 4.088A pdb=" N LEU A3106 " --> pdb=" O LEU A3102 " (cutoff:3.500A) removed outlier: 4.361A pdb=" N GLN A3117 " --> pdb=" O ILE A3113 " (cutoff:3.500A) Processing helix chain 'A' and resid 3124 through 3144 removed outlier: 3.893A pdb=" N GLN A3128 " --> pdb=" O LEU A3124 " (cutoff:3.500A) removed outlier: 5.184A pdb=" N THR A3143 " --> pdb=" O TYR A3139 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N SER A3144 " --> pdb=" O ALA A3140 " (cutoff:3.500A) Processing helix chain 'A' and resid 3149 through 3165 removed outlier: 3.924A pdb=" N ARG A3153 " --> pdb=" O VAL A3149 " (cutoff:3.500A) removed outlier: 5.119A pdb=" N GLY A3165 " --> pdb=" O ALA A3161 " (cutoff:3.500A) Processing helix chain 'A' and resid 3170 through 3183 removed outlier: 4.134A pdb=" N THR A3174 " --> pdb=" O ALA A3170 " (cutoff:3.500A) removed outlier: 5.234A pdb=" N SER A3183 " --> pdb=" O HIS A3179 " (cutoff:3.500A) Processing helix chain 'A' and resid 3613 through 3629 removed outlier: 3.914A pdb=" N ALA A3617 " --> pdb=" O PRO A3613 " (cutoff:3.500A) Processing helix chain 'A' and resid 3636 through 3647 removed outlier: 4.329A pdb=" N LYS A3640 " --> pdb=" O TYR A3636 " (cutoff:3.500A) removed outlier: 5.133A pdb=" N LYS A3647 " --> pdb=" O GLU A3643 " (cutoff:3.500A) Processing helix chain 'A' and resid 3663 through 3678 removed outlier: 3.856A pdb=" N LEU A3677 " --> pdb=" O SER A3673 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N THR A3678 " --> pdb=" O ARG A3674 " (cutoff:3.500A) Processing helix chain 'A' and resid 3686 through 3700 removed outlier: 4.147A pdb=" N ASP A3694 " --> pdb=" O MET A3690 " (cutoff:3.500A) removed outlier: 4.293A pdb=" N CYS A3700 " --> pdb=" O MET A3696 " (cutoff:3.500A) Processing helix chain 'A' and resid 3714 through 3734 removed outlier: 4.877A pdb=" N LYS A3718 " --> pdb=" O SER A3714 " (cutoff:3.500A) Processing helix chain 'A' and resid 3736 through 3749 removed outlier: 3.703A pdb=" N MET A3740 " --> pdb=" O GLY A3736 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N VAL A3741 " --> pdb=" O ALA A3737 " (cutoff:3.500A) removed outlier: 3.776A pdb=" N SER A3748 " --> pdb=" O THR A3744 " (cutoff:3.500A) removed outlier: 5.374A pdb=" N LYS A3749 " --> pdb=" O ILE A3745 " (cutoff:3.500A) Processing helix chain 'A' and resid 3753 through 3768 Processing helix chain 'A' and resid 3771 through 3786 removed outlier: 4.730A pdb=" N GLN A3775 " --> pdb=" O ASN A3771 " (cutoff:3.500A) removed outlier: 4.934A pdb=" N LYS A3786 " --> pdb=" O LEU A3782 " (cutoff:3.500A) Processing helix chain 'A' and resid 3787 through 3801 removed outlier: 4.371A pdb=" N PHE A3791 " --> pdb=" O ASP A3787 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N SER A3800 " --> pdb=" O GLY A3796 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N CYS A3801 " --> pdb=" O LEU A3797 " (cutoff:3.500A) Processing helix chain 'A' and resid 3805 through 3816 removed outlier: 3.688A pdb=" N PHE A3809 " --> pdb=" O ASP A3805 " (cutoff:3.500A) removed outlier: 3.997A pdb=" N GLU A3816 " --> pdb=" O GLN A3812 " (cutoff:3.500A) Processing helix chain 'A' and resid 3833 through 3849 removed outlier: 4.719A pdb=" N THR A3837 " --> pdb=" O ASP A3833 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N CYS A3848 " --> pdb=" O LEU A3844 " (cutoff:3.500A) Processing helix chain 'A' and resid 3852 through 3862 Processing helix chain 'A' and resid 3870 through 3894 removed outlier: 3.631A pdb=" N SER A3874 " --> pdb=" O ASN A3870 " (cutoff:3.500A) Processing helix chain 'A' and resid 3900 through 3926 removed outlier: 3.962A pdb=" N LYS A3909 " --> pdb=" O ARG A3905 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N ILE A3925 " --> pdb=" O LEU A3921 " (cutoff:3.500A) Processing helix chain 'A' and resid 3929 through 3940 removed outlier: 3.873A pdb=" N HIS A3938 " --> pdb=" O GLN A3934 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N ARG A3940 " --> pdb=" O LEU A3936 " (cutoff:3.500A) Processing helix chain 'A' and resid 3941 through 3959 removed outlier: 3.647A pdb=" N HIS A3954 " --> pdb=" O HIS A3950 " (cutoff:3.500A) removed outlier: 4.121A pdb=" N MET A3957 " --> pdb=" O ALA A3953 " (cutoff:3.500A) removed outlier: 4.341A pdb=" N LYS A3958 " --> pdb=" O HIS A3954 " (cutoff:3.500A) Processing helix chain 'A' and resid 3965 through 3988 removed outlier: 3.942A pdb=" N GLU A3988 " --> pdb=" O LEU A3984 " (cutoff:3.500A) Processing helix chain 'A' and resid 3994 through 4008 Processing helix chain 'A' and resid 4009 through 4030 removed outlier: 4.935A pdb=" N MET A4013 " --> pdb=" O ASN A4009 " (cutoff:3.500A) removed outlier: 3.938A pdb=" N ILE A4014 " --> pdb=" O ASN A4010 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N SER A4029 " --> pdb=" O LYS A4025 " (cutoff:3.500A) removed outlier: 5.175A pdb=" N SER A4030 " --> pdb=" O ASP A4026 " (cutoff:3.500A) Processing helix chain 'A' and resid 4031 through 4038 removed outlier: 6.081A pdb=" N GLU A4035 " --> pdb=" O ASP A4031 " (cutoff:3.500A) removed outlier: 5.126A pdb=" N TYR A4036 " --> pdb=" O THR A4032 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N ASP A4037 " --> pdb=" O PHE A4033 " (cutoff:3.500A) Proline residue: A4038 - end of helix No H-bonds generated for 'chain 'A' and resid 4031 through 4038' Processing helix chain 'A' and resid 4045 through 4057 Processing helix chain 'A' and resid 4060 through 4072 Processing helix chain 'A' and resid 4080 through 4110 removed outlier: 4.828A pdb=" N ARG A4087 " --> pdb=" O GLU A4083 " (cutoff:3.500A) removed outlier: 5.025A pdb=" N PHE A4088 " --> pdb=" O PHE A4084 " (cutoff:3.500A) Proline residue: A4091 - end of helix Processing helix chain 'A' and resid 4113 through 4123 removed outlier: 5.460A pdb=" N GLN A4117 " --> pdb=" O ASP A4113 " (cutoff:3.500A) removed outlier: 4.515A pdb=" N THR A4118 " --> pdb=" O THR A4114 " (cutoff:3.500A) removed outlier: 4.815A pdb=" N PHE A4119 " --> pdb=" O ARG A4115 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N LEU A4122 " --> pdb=" O THR A4118 " (cutoff:3.500A) removed outlier: 4.678A pdb=" N ALA A4123 " --> pdb=" O PHE A4119 " (cutoff:3.500A) Processing helix chain 'A' and resid 4124 through 4131 removed outlier: 4.420A pdb=" N ASN A4128 " --> pdb=" O GLU A4124 " (cutoff:3.500A) Processing helix chain 'A' and resid 4154 through 4163 removed outlier: 3.693A pdb=" N ARG A4158 " --> pdb=" O SER A4154 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N THR A4159 " --> pdb=" O GLU A4155 " (cutoff:3.500A) removed outlier: 4.440A pdb=" N GLN A4160 " --> pdb=" O SER A4156 " (cutoff:3.500A) Processing helix chain 'A' and resid 4164 through 4180 removed outlier: 5.882A pdb=" N GLU A4168 " --> pdb=" O PRO A4164 " (cutoff:3.500A) removed outlier: 4.247A pdb=" N SER A4169 " --> pdb=" O GLN A4165 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N ARG A4171 " --> pdb=" O LYS A4167 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N GLN A4172 " --> pdb=" O GLU A4168 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N GLU A4180 " --> pdb=" O ASP A4176 " (cutoff:3.500A) Processing helix chain 'A' and resid 4185 through 4207 removed outlier: 4.231A pdb=" N ILE A4207 " --> pdb=" O LEU A4203 " (cutoff:3.500A) Processing helix chain 'A' and resid 4486 through 4500 removed outlier: 4.032A pdb=" N GLN A4490 " --> pdb=" O ILE A4486 " (cutoff:3.500A) Processing helix chain 'A' and resid 4501 through 4519 removed outlier: 4.881A pdb=" N MET A4505 " --> pdb=" O TYR A4501 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N ILE A4517 " --> pdb=" O ALA A4513 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N LEU A4519 " --> pdb=" O ASN A4515 " (cutoff:3.500A) Processing helix chain 'A' and resid 4569 through 4614 removed outlier: 3.758A pdb=" N LYS A4595 " --> pdb=" O TYR A4591 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N VAL A4596 " --> pdb=" O TYR A4592 " (cutoff:3.500A) Proline residue: A4597 - end of helix removed outlier: 3.985A pdb=" N PHE A4613 " --> pdb=" O ARG A4609 " (cutoff:3.500A) Processing helix chain 'A' and resid 4626 through 4636 removed outlier: 4.041A pdb=" N GLN A4630 " --> pdb=" O ASP A4626 " (cutoff:3.500A) removed outlier: 4.537A pdb=" N LEU A4634 " --> pdb=" O GLN A4630 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N VAL A4635 " --> pdb=" O TRP A4631 " (cutoff:3.500A) removed outlier: 4.672A pdb=" N ILE A4636 " --> pdb=" O ASP A4632 " (cutoff:3.500A) Processing helix chain 'A' and resid 4649 through 4663 removed outlier: 3.605A pdb=" N LYS A4653 " --> pdb=" O PHE A4649 " (cutoff:3.500A) removed outlier: 3.830A pdb=" N GLY A4659 " --> pdb=" O MET A4655 " (cutoff:3.500A) removed outlier: 5.264A pdb=" N GLU A4660 " --> pdb=" O ASP A4656 " (cutoff:3.500A) removed outlier: 6.543A pdb=" N PHE A4661 " --> pdb=" O LYS A4657 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N TYR A4662 " --> pdb=" O TYR A4658 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N GLY A4663 " --> pdb=" O GLY A4659 " (cutoff:3.500A) Processing helix chain 'A' and resid 4664 through 4672 removed outlier: 3.837A pdb=" N LEU A4671 " --> pdb=" O ILE A4667 " (cutoff:3.500A) Processing helix chain 'A' and resid 4704 through 4717 removed outlier: 3.556A pdb=" N THR A4716 " --> pdb=" O GLY A4712 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N ASP A4717 " --> pdb=" O VAL A4713 " (cutoff:3.500A) Processing helix chain 'A' and resid 4718 through 4737 Processing helix chain 'A' and resid 4738 through 4751 removed outlier: 6.019A pdb=" N ALA A4742 " --> pdb=" O PHE A4738 " (cutoff:3.500A) removed outlier: 5.604A pdb=" N HIS A4743 " --> pdb=" O PHE A4739 " (cutoff:3.500A) removed outlier: 5.647A pdb=" N LEU A4744 " --> pdb=" O PHE A4740 " (cutoff:3.500A) removed outlier: 4.961A pdb=" N LEU A4745 " --> pdb=" O ALA A4741 " (cutoff:3.500A) removed outlier: 4.788A pdb=" N ASP A4746 " --> pdb=" O ALA A4742 " (cutoff:3.500A) removed outlier: 5.300A pdb=" N ILE A4747 " --> pdb=" O HIS A4743 " (cutoff:3.500A) removed outlier: 5.127A pdb=" N ALA A4748 " --> pdb=" O LEU A4744 " (cutoff:3.500A) removed outlier: 5.132A pdb=" N MET A4749 " --> pdb=" O LEU A4745 " (cutoff:3.500A) removed outlier: 4.582A pdb=" N GLY A4750 " --> pdb=" O ASP A4746 " (cutoff:3.500A) removed outlier: 5.296A pdb=" N PHE A4751 " --> pdb=" O ILE A4747 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4738 through 4751' Processing helix chain 'A' and resid 4755 through 4764 removed outlier: 3.584A pdb=" N HIS A4763 " --> pdb=" O SER A4759 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N ASN A4764 " --> pdb=" O SER A4760 " (cutoff:3.500A) Processing helix chain 'A' and resid 4766 through 4790 removed outlier: 3.967A pdb=" N LEU A4770 " --> pdb=" O LYS A4766 " (cutoff:3.500A) Processing helix chain 'A' and resid 4809 through 4820 Processing helix chain 'A' and resid 4828 through 4833 removed outlier: 4.479A pdb=" N ILE A4832 " --> pdb=" O ILE A4828 " (cutoff:3.500A) removed outlier: 6.727A pdb=" N GLU A4833 " --> pdb=" O GLY A4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4828 through 4833' Processing helix chain 'A' and resid 4840 through 4857 Processing helix chain 'A' and resid 4859 through 4888 removed outlier: 3.514A pdb=" N PHE A4871 " --> pdb=" O ILE A4867 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N LYS A4882 " --> pdb=" O GLN A4878 " (cutoff:3.500A) removed outlier: 4.808A pdb=" N ASP A4884 " --> pdb=" O GLN A4880 " (cutoff:3.500A) Processing helix chain 'A' and resid 4895 through 4900 removed outlier: 3.891A pdb=" N PHE A4899 " --> pdb=" O GLY A4895 " (cutoff:3.500A) removed outlier: 4.479A pdb=" N ASP A4900 " --> pdb=" O ASN A4896 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4895 through 4900' Processing helix chain 'A' and resid 4904 through 4912 Processing helix chain 'A' and resid 4915 through 4929 removed outlier: 6.110A pdb=" N TYR A4919 " --> pdb=" O ASN A4915 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N LEU A4920 " --> pdb=" O LEU A4916 " (cutoff:3.500A) Processing helix chain 'A' and resid 4935 through 4948 Processing helix chain 'A' and resid 4958 through 4964 removed outlier: 3.677A pdb=" N TYR A4963 " --> pdb=" O PHE A4959 " (cutoff:3.500A) removed outlier: 4.739A pdb=" N GLU A4964 " --> pdb=" O ARG A4960 " (cutoff:3.500A) Processing helix chain 'A' and resid 398 through 403 removed outlier: 4.147A pdb=" N ASP A 401 " --> pdb=" O HIS A 398 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N GLY A 402 " --> pdb=" O MET A 399 " (cutoff:3.500A) removed outlier: 5.027A pdb=" N LEU A 403 " --> pdb=" O ASP A 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 398 through 403' Processing helix chain 'C' and resid 61 through 66 removed outlier: 5.462A pdb=" N CYS C 65 " --> pdb=" O ASP C 61 " (cutoff:3.500A) removed outlier: 4.081A pdb=" N THR C 66 " --> pdb=" O LEU C 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 61 through 66' Processing helix chain 'C' and resid 74 through 85 removed outlier: 3.737A pdb=" N LEU C 78 " --> pdb=" O SER C 74 " (cutoff:3.500A) removed outlier: 5.361A pdb=" N THR C 85 " --> pdb=" O MET C 81 " (cutoff:3.500A) Processing helix chain 'C' and resid 266 through 271 removed outlier: 5.117A pdb=" N ALA C 271 " --> pdb=" O VAL C 267 " (cutoff:3.500A) Processing helix chain 'C' and resid 409 through 439 removed outlier: 3.697A pdb=" N SER C 413 " --> pdb=" O GLN C 409 " (cutoff:3.500A) removed outlier: 4.858A pdb=" N VAL C 418 " --> pdb=" O ARG C 414 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N LEU C 436 " --> pdb=" O GLY C 432 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N SER C 437 " --> pdb=" O LEU C 433 " (cutoff:3.500A) removed outlier: 4.920A pdb=" N LYS C 438 " --> pdb=" O ASP C 434 " (cutoff:3.500A) removed outlier: 3.785A pdb=" N LYS C 439 " --> pdb=" O ALA C 435 " (cutoff:3.500A) Processing helix chain 'C' and resid 448 through 464 removed outlier: 4.813A pdb=" N VAL C 452 " --> pdb=" O PRO C 448 " (cutoff:3.500A) removed outlier: 3.921A pdb=" N HIS C 464 " --> pdb=" O ILE C 460 " (cutoff:3.500A) Processing helix chain 'C' and resid 471 through 493 removed outlier: 3.507A pdb=" N PHE C 489 " --> pdb=" O ARG C 485 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N GLU C 491 " --> pdb=" O ASN C 487 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N GLU C 492 " --> pdb=" O LEU C 488 " (cutoff:3.500A) Processing helix chain 'C' and resid 494 through 506 Processing helix chain 'C' and resid 519 through 542 removed outlier: 3.982A pdb=" N GLY C 523 " --> pdb=" O GLY C 519 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N GLU C 524 " --> pdb=" O ARG C 520 " (cutoff:3.500A) removed outlier: 4.345A pdb=" N TRP C 526 " --> pdb=" O ALA C 522 " (cutoff:3.500A) removed outlier: 5.932A pdb=" N LYS C 527 " --> pdb=" O GLY C 523 " (cutoff:3.500A) removed outlier: 5.611A pdb=" N SER C 528 " --> pdb=" O GLU C 524 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N ILE C 541 " --> pdb=" O LEU C 537 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N ARG C 542 " --> pdb=" O ALA C 538 " (cutoff:3.500A) Processing helix chain 'C' and resid 544 through 552 removed outlier: 3.860A pdb=" N CYS C 548 " --> pdb=" O ASN C 544 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N SER C 552 " --> pdb=" O CYS C 548 " (cutoff:3.500A) Processing helix chain 'C' and resid 554 through 563 removed outlier: 4.381A pdb=" N GLU C 563 " --> pdb=" O ILE C 559 " (cutoff:3.500A) Processing helix chain 'C' and resid 567 through 582 removed outlier: 3.919A pdb=" N ILE C 571 " --> pdb=" O ALA C 567 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N GLU C 581 " --> pdb=" O CYS C 577 " (cutoff:3.500A) Processing helix chain 'C' and resid 583 through 589 removed outlier: 4.006A pdb=" N ASN C 587 " --> pdb=" O PRO C 583 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ILE C 588 " --> pdb=" O GLU C 584 " (cutoff:3.500A) Processing helix chain 'C' and resid 590 through 605 removed outlier: 3.791A pdb=" N LEU C 601 " --> pdb=" O ILE C 597 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ASP C 602 " --> pdb=" O ILE C 598 " (cutoff:3.500A) Processing helix chain 'C' and resid 607 through 620 removed outlier: 3.738A pdb=" N LEU C 611 " --> pdb=" O ASN C 607 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N CYS C 620 " --> pdb=" O SER C 616 " (cutoff:3.500A) Processing helix chain 'C' and resid 625 through 636 Processing helix chain 'C' and resid 699 through 704 removed outlier: 5.050A pdb=" N TYR C 703 " --> pdb=" O SER C 699 " (cutoff:3.500A) removed outlier: 4.826A pdb=" N SER C 704 " --> pdb=" O THR C 700 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 699 through 704' Processing helix chain 'C' and resid 821 through 826 Processing helix chain 'C' and resid 878 through 901 removed outlier: 3.705A pdb=" N LYS C 897 " --> pdb=" O TRP C 893 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N GLU C 899 " --> pdb=" O MET C 895 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LEU C 900 " --> pdb=" O ASN C 896 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N GLY C 901 " --> pdb=" O LYS C 897 " (cutoff:3.500A) Processing helix chain 'C' and resid 929 through 946 removed outlier: 4.366A pdb=" N MET C 935 " --> pdb=" O TYR C 931 " (cutoff:3.500A) removed outlier: 4.135A pdb=" N LEU C 944 " --> pdb=" O LEU C 940 " (cutoff:3.500A) Processing helix chain 'C' and resid 982 through 987 removed outlier: 3.673A pdb=" N ILE C 986 " --> pdb=" O ASP C 982 " (cutoff:3.500A) removed outlier: 5.742A pdb=" N LYS C 987 " --> pdb=" O LEU C 983 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 982 through 987' Processing helix chain 'C' and resid 989 through 1012 removed outlier: 3.917A pdb=" N GLU C 993 " --> pdb=" O THR C 989 " (cutoff:3.500A) Processing helix chain 'C' and resid 1034 through 1039 removed outlier: 5.117A pdb=" N ASP C1039 " --> pdb=" O TYR C1035 " (cutoff:3.500A) Processing helix chain 'C' and resid 1044 through 1061 removed outlier: 3.956A pdb=" N TYR C1060 " --> pdb=" O THR C1056 " (cutoff:3.500A) removed outlier: 4.859A pdb=" N GLY C1061 " --> pdb=" O LEU C1057 " (cutoff:3.500A) Processing helix chain 'C' and resid 1230 through 1235 removed outlier: 6.323A pdb=" N GLU C1234 " --> pdb=" O CYS C1230 " (cutoff:3.500A) Processing helix chain 'C' and resid 1570 through 1576 removed outlier: 4.150A pdb=" N GLU C1574 " --> pdb=" O LEU C1570 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N LYS C1576 " --> pdb=" O LYS C1572 " (cutoff:3.500A) Processing helix chain 'C' and resid 1640 through 1645 removed outlier: 4.431A pdb=" N LEU C1644 " --> pdb=" O ASP C1640 " (cutoff:3.500A) removed outlier: 4.964A pdb=" N THR C1645 " --> pdb=" O ILE C1641 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1640 through 1645' Processing helix chain 'C' and resid 1647 through 1666 removed outlier: 3.727A pdb=" N CYS C1665 " --> pdb=" O TYR C1661 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ALA C1666 " --> pdb=" O SER C1662 " (cutoff:3.500A) Processing helix chain 'C' and resid 1669 through 1681 Processing helix chain 'C' and resid 1682 through 1691 removed outlier: 3.667A pdb=" N GLU C1690 " --> pdb=" O LEU C1686 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N ASN C1691 " --> pdb=" O TYR C1687 " (cutoff:3.500A) Processing helix chain 'C' and resid 1695 through 1710 removed outlier: 3.683A pdb=" N ILE C1707 " --> pdb=" O TYR C1703 " (cutoff:3.500A) Processing helix chain 'C' and resid 1711 through 1722 Processing helix chain 'C' and resid 1730 through 1735 removed outlier: 4.228A pdb=" N LYS C1734 " --> pdb=" O THR C1730 " (cutoff:3.500A) removed outlier: 4.358A pdb=" N SER C1735 " --> pdb=" O GLU C1731 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1730 through 1735' Processing helix chain 'C' and resid 1773 through 1778 removed outlier: 6.142A pdb=" N GLN C1777 " --> pdb=" O ASN C1773 " (cutoff:3.500A) removed outlier: 6.372A pdb=" N TYR C1778 " --> pdb=" O GLU C1774 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1773 through 1778' Processing helix chain 'C' and resid 1783 through 1802 Processing helix chain 'C' and resid 1813 through 1832 Proline residue: C1820 - end of helix removed outlier: 3.689A pdb=" N MET C1831 " --> pdb=" O THR C1827 " (cutoff:3.500A) removed outlier: 4.176A pdb=" N GLY C1832 " --> pdb=" O LEU C1828 " (cutoff:3.500A) Processing helix chain 'C' and resid 1835 through 1848 removed outlier: 3.645A pdb=" N LEU C1839 " --> pdb=" O HIS C1835 " (cutoff:3.500A) Proline residue: C1848 - end of helix Processing helix chain 'C' and resid 1901 through 1945 removed outlier: 4.684A pdb=" N LEU C1909 " --> pdb=" O LEU C1905 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N LEU C1910 " --> pdb=" O GLN C1906 " (cutoff:3.500A) Processing helix chain 'C' and resid 1999 through 2012 removed outlier: 6.440A pdb=" N ASP C2003 " --> pdb=" O ASP C1999 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N LEU C2004 " --> pdb=" O PHE C2000 " (cutoff:3.500A) Processing helix chain 'C' and resid 2024 through 2039 removed outlier: 4.553A pdb=" N TYR C2039 " --> pdb=" O GLU C2035 " (cutoff:3.500A) Processing helix chain 'C' and resid 2058 through 2074 removed outlier: 3.853A pdb=" N LEU C2062 " --> pdb=" O THR C2058 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N SER C2064 " --> pdb=" O GLN C2060 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N GLU C2073 " --> pdb=" O ARG C2069 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N SER C2074 " --> pdb=" O TRP C2070 " (cutoff:3.500A) Processing helix chain 'C' and resid 2078 through 2095 removed outlier: 3.914A pdb=" N VAL C2082 " --> pdb=" O ASP C2078 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N GLY C2095 " --> pdb=" O ARG C2091 " (cutoff:3.500A) Processing helix chain 'C' and resid 2096 through 2106 removed outlier: 3.636A pdb=" N LEU C2103 " --> pdb=" O LEU C2099 " (cutoff:3.500A) Proline residue: C2104 - end of helix Processing helix chain 'C' and resid 2113 through 2134 removed outlier: 3.633A pdb=" N THR C2117 " --> pdb=" O SER C2113 " (cutoff:3.500A) removed outlier: 3.879A pdb=" N SER C2132 " --> pdb=" O ARG C2128 " (cutoff:3.500A) removed outlier: 3.921A pdb=" N VAL C2133 " --> pdb=" O SER C2129 " (cutoff:3.500A) removed outlier: 5.797A pdb=" N ARG C2134 " --> pdb=" O LEU C2130 " (cutoff:3.500A) Processing helix chain 'C' and resid 2138 through 2153 removed outlier: 4.735A pdb=" N LEU C2142 " --> pdb=" O GLU C2138 " (cutoff:3.500A) Processing helix chain 'C' and resid 2154 through 2159 removed outlier: 3.801A pdb=" N GLN C2158 " --> pdb=" O LYS C2154 " (cutoff:3.500A) Processing helix chain 'C' and resid 2160 through 2167 removed outlier: 3.692A pdb=" N GLY C2167 " --> pdb=" O MET C2163 " (cutoff:3.500A) Processing helix chain 'C' and resid 2168 through 2181 removed outlier: 4.560A pdb=" N GLY C2181 " --> pdb=" O VAL C2177 " (cutoff:3.500A) Processing helix chain 'C' and resid 2192 through 2207 removed outlier: 3.626A pdb=" N PHE C2200 " --> pdb=" O ASN C2196 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N ARG C2206 " --> pdb=" O CYS C2202 " (cutoff:3.500A) removed outlier: 4.575A pdb=" N ILE C2207 " --> pdb=" O TYR C2203 " (cutoff:3.500A) Processing helix chain 'C' and resid 2208 through 2217 removed outlier: 4.153A pdb=" N ASP C2217 " --> pdb=" O LYS C2213 " (cutoff:3.500A) Processing helix chain 'C' and resid 2218 through 2227 removed outlier: 4.393A pdb=" N SER C2227 " --> pdb=" O LEU C2223 " (cutoff:3.500A) Processing helix chain 'C' and resid 2239 through 2249 removed outlier: 4.149A pdb=" N VAL C2248 " --> pdb=" O ALA C2244 " (cutoff:3.500A) removed outlier: 3.977A pdb=" N MET C2249 " --> pdb=" O ALA C2245 " (cutoff:3.500A) Processing helix chain 'C' and resid 2251 through 2258 Processing helix chain 'C' and resid 2259 through 2271 removed outlier: 4.099A pdb=" N LEU C2263 " --> pdb=" O ARG C2259 " (cutoff:3.500A) removed outlier: 4.569A pdb=" N ALA C2271 " --> pdb=" O VAL C2267 " (cutoff:3.500A) Processing helix chain 'C' and resid 2295 through 2308 removed outlier: 3.831A pdb=" N TYR C2299 " --> pdb=" O GLU C2295 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N PHE C2308 " --> pdb=" O ARG C2304 " (cutoff:3.500A) Processing helix chain 'C' and resid 2314 through 2328 removed outlier: 3.723A pdb=" N ARG C2328 " --> pdb=" O LEU C2324 " (cutoff:3.500A) Processing helix chain 'C' and resid 2343 through 2349 removed outlier: 3.649A pdb=" N ALA C2347 " --> pdb=" O GLY C2343 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N GLU C2349 " --> pdb=" O LEU C2345 " (cutoff:3.500A) Processing helix chain 'C' and resid 2387 through 2403 removed outlier: 4.365A pdb=" N THR C2391 " --> pdb=" O ASN C2387 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N ARG C2402 " --> pdb=" O ASP C2398 " (cutoff:3.500A) removed outlier: 4.811A pdb=" N CYS C2403 " --> pdb=" O LEU C2399 " (cutoff:3.500A) Processing helix chain 'C' and resid 2416 through 2425 removed outlier: 5.399A pdb=" N ILE C2420 " --> pdb=" O GLU C2416 " (cutoff:3.500A) Processing helix chain 'C' and resid 2432 through 2442 removed outlier: 4.138A pdb=" N GLN C2442 " --> pdb=" O SER C2438 " (cutoff:3.500A) Processing helix chain 'C' and resid 2462 through 2477 removed outlier: 4.120A pdb=" N LYS C2466 " --> pdb=" O CYS C2462 " (cutoff:3.500A) removed outlier: 4.696A pdb=" N ALA C2467 " --> pdb=" O PRO C2463 " (cutoff:3.500A) Processing helix chain 'C' and resid 2481 through 2488 removed outlier: 3.955A pdb=" N LEU C2488 " --> pdb=" O PHE C2484 " (cutoff:3.500A) Processing helix chain 'C' and resid 2493 through 2503 removed outlier: 4.344A pdb=" N ALA C2501 " --> pdb=" O LEU C2497 " (cutoff:3.500A) removed outlier: 4.962A pdb=" N SER C2502 " --> pdb=" O ARG C2498 " (cutoff:3.500A) removed outlier: 5.344A pdb=" N LEU C2503 " --> pdb=" O ALA C2499 " (cutoff:3.500A) Processing helix chain 'C' and resid 2511 through 2529 removed outlier: 4.622A pdb=" N ASN C2518 " --> pdb=" O ALA C2514 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N CYS C2522 " --> pdb=" O ASN C2518 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N THR C2523 " --> pdb=" O ARG C2519 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N VAL C2525 " --> pdb=" O LEU C2521 " (cutoff:3.500A) removed outlier: 5.227A pdb=" N LEU C2526 " --> pdb=" O CYS C2522 " (cutoff:3.500A) Proline residue: C2527 - end of helix Processing helix chain 'C' and resid 2536 through 2553 removed outlier: 3.981A pdb=" N LEU C2550 " --> pdb=" O ILE C2546 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N THR C2552 " --> pdb=" O SER C2548 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N VAL C2553 " --> pdb=" O LEU C2549 " (cutoff:3.500A) Processing helix chain 'C' and resid 2558 through 2576 removed outlier: 4.007A pdb=" N LEU C2562 " --> pdb=" O LYS C2558 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N LEU C2575 " --> pdb=" O GLU C2571 " (cutoff:3.500A) removed outlier: 4.064A pdb=" N SER C2576 " --> pdb=" O VAL C2572 " (cutoff:3.500A) Processing helix chain 'C' and resid 2582 through 2601 removed outlier: 3.874A pdb=" N MET C2586 " --> pdb=" O ARG C2582 " (cutoff:3.500A) Proline residue: C2598 - end of helix Processing helix chain 'C' and resid 2605 through 2627 removed outlier: 5.630A pdb=" N LEU C2624 " --> pdb=" O LYS C2620 " (cutoff:3.500A) Proline residue: C2625 - end of helix Processing helix chain 'C' and resid 2634 through 2653 removed outlier: 3.603A pdb=" N GLU C2638 " --> pdb=" O ALA C2634 " (cutoff:3.500A) removed outlier: 3.948A pdb=" N ALA C2652 " --> pdb=" O GLY C2648 " (cutoff:3.500A) removed outlier: 5.529A pdb=" N LEU C2653 " --> pdb=" O ILE C2649 " (cutoff:3.500A) Processing helix chain 'C' and resid 2658 through 2678 Proline residue: C2668 - end of helix Proline residue: C2678 - end of helix Processing helix chain 'C' and resid 2715 through 2741 removed outlier: 3.910A pdb=" N PHE C2721 " --> pdb=" O LYS C2717 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ASN C2740 " --> pdb=" O ASP C2736 " (cutoff:3.500A) Processing helix chain 'C' and resid 2768 through 2787 removed outlier: 3.807A pdb=" N TYR C2772 " --> pdb=" O GLU C2768 " (cutoff:3.500A) Proline residue: C2775 - end of helix removed outlier: 4.701A pdb=" N TRP C2786 " --> pdb=" O THR C2782 " (cutoff:3.500A) removed outlier: 4.628A pdb=" N GLY C2787 " --> pdb=" O MET C2783 " (cutoff:3.500A) Processing helix chain 'C' and resid 2835 through 2865 removed outlier: 3.980A pdb=" N GLU C2862 " --> pdb=" O LYS C2858 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N SER C2863 " --> pdb=" O LEU C2859 " (cutoff:3.500A) removed outlier: 4.747A pdb=" N LYS C2864 " --> pdb=" O GLU C2860 " (cutoff:3.500A) Processing helix chain 'C' and resid 2879 through 2901 removed outlier: 4.130A pdb=" N LYS C2883 " --> pdb=" O THR C2879 " (cutoff:3.500A) removed outlier: 4.761A pdb=" N ILE C2893 " --> pdb=" O LYS C2889 " (cutoff:3.500A) Processing helix chain 'C' and resid 2983 through 3001 removed outlier: 3.909A pdb=" N ALA C2987 " --> pdb=" O PHE C2983 " (cutoff:3.500A) Proline residue: C2990 - end of helix Processing helix chain 'C' and resid 3009 through 3027 removed outlier: 4.398A pdb=" N GLY C3013 " --> pdb=" O PHE C3009 " (cutoff:3.500A) Processing helix chain 'C' and resid 3035 through 3052 Processing helix chain 'C' and resid 3063 through 3082 removed outlier: 3.991A pdb=" N GLU C3070 " --> pdb=" O ALA C3066 " (cutoff:3.500A) removed outlier: 4.051A pdb=" N THR C3082 " --> pdb=" O GLN C3078 " (cutoff:3.500A) Processing helix chain 'C' and resid 3102 through 3117 removed outlier: 4.089A pdb=" N LEU C3106 " --> pdb=" O LEU C3102 " (cutoff:3.500A) removed outlier: 4.361A pdb=" N GLN C3117 " --> pdb=" O ILE C3113 " (cutoff:3.500A) Processing helix chain 'C' and resid 3124 through 3144 removed outlier: 3.894A pdb=" N GLN C3128 " --> pdb=" O LEU C3124 " (cutoff:3.500A) removed outlier: 5.183A pdb=" N THR C3143 " --> pdb=" O TYR C3139 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N SER C3144 " --> pdb=" O ALA C3140 " (cutoff:3.500A) Processing helix chain 'C' and resid 3149 through 3165 removed outlier: 3.924A pdb=" N ARG C3153 " --> pdb=" O VAL C3149 " (cutoff:3.500A) removed outlier: 5.119A pdb=" N GLY C3165 " --> pdb=" O ALA C3161 " (cutoff:3.500A) Processing helix chain 'C' and resid 3170 through 3183 removed outlier: 4.134A pdb=" N THR C3174 " --> pdb=" O ALA C3170 " (cutoff:3.500A) removed outlier: 5.234A pdb=" N SER C3183 " --> pdb=" O HIS C3179 " (cutoff:3.500A) Processing helix chain 'C' and resid 3613 through 3629 removed outlier: 3.915A pdb=" N ALA C3617 " --> pdb=" O PRO C3613 " (cutoff:3.500A) Processing helix chain 'C' and resid 3636 through 3647 removed outlier: 4.329A pdb=" N LYS C3640 " --> pdb=" O TYR C3636 " (cutoff:3.500A) removed outlier: 5.133A pdb=" N LYS C3647 " --> pdb=" O GLU C3643 " (cutoff:3.500A) Processing helix chain 'C' and resid 3663 through 3678 removed outlier: 3.856A pdb=" N LEU C3677 " --> pdb=" O SER C3673 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N THR C3678 " --> pdb=" O ARG C3674 " (cutoff:3.500A) Processing helix chain 'C' and resid 3686 through 3700 removed outlier: 4.147A pdb=" N ASP C3694 " --> pdb=" O MET C3690 " (cutoff:3.500A) removed outlier: 4.292A pdb=" N CYS C3700 " --> pdb=" O MET C3696 " (cutoff:3.500A) Processing helix chain 'C' and resid 3714 through 3734 removed outlier: 4.876A pdb=" N LYS C3718 " --> pdb=" O SER C3714 " (cutoff:3.500A) Processing helix chain 'C' and resid 3736 through 3749 removed outlier: 3.704A pdb=" N MET C3740 " --> pdb=" O GLY C3736 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N VAL C3741 " --> pdb=" O ALA C3737 " (cutoff:3.500A) removed outlier: 3.776A pdb=" N SER C3748 " --> pdb=" O THR C3744 " (cutoff:3.500A) removed outlier: 5.374A pdb=" N LYS C3749 " --> pdb=" O ILE C3745 " (cutoff:3.500A) Processing helix chain 'C' and resid 3753 through 3768 Processing helix chain 'C' and resid 3771 through 3786 removed outlier: 4.730A pdb=" N GLN C3775 " --> pdb=" O ASN C3771 " (cutoff:3.500A) removed outlier: 4.934A pdb=" N LYS C3786 " --> pdb=" O LEU C3782 " (cutoff:3.500A) Processing helix chain 'C' and resid 3787 through 3801 removed outlier: 4.371A pdb=" N PHE C3791 " --> pdb=" O ASP C3787 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N SER C3800 " --> pdb=" O GLY C3796 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N CYS C3801 " --> pdb=" O LEU C3797 " (cutoff:3.500A) Processing helix chain 'C' and resid 3805 through 3816 removed outlier: 3.688A pdb=" N PHE C3809 " --> pdb=" O ASP C3805 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N GLU C3816 " --> pdb=" O GLN C3812 " (cutoff:3.500A) Processing helix chain 'C' and resid 3833 through 3849 removed outlier: 4.719A pdb=" N THR C3837 " --> pdb=" O ASP C3833 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N CYS C3848 " --> pdb=" O LEU C3844 " (cutoff:3.500A) Processing helix chain 'C' and resid 3852 through 3862 Processing helix chain 'C' and resid 3870 through 3894 removed outlier: 3.631A pdb=" N SER C3874 " --> pdb=" O ASN C3870 " (cutoff:3.500A) Processing helix chain 'C' and resid 3900 through 3926 removed outlier: 3.962A pdb=" N LYS C3909 " --> pdb=" O ARG C3905 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N ILE C3925 " --> pdb=" O LEU C3921 " (cutoff:3.500A) Processing helix chain 'C' and resid 3929 through 3940 removed outlier: 3.873A pdb=" N HIS C3938 " --> pdb=" O GLN C3934 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N ARG C3940 " --> pdb=" O LEU C3936 " (cutoff:3.500A) Processing helix chain 'C' and resid 3941 through 3959 removed outlier: 3.647A pdb=" N HIS C3954 " --> pdb=" O HIS C3950 " (cutoff:3.500A) removed outlier: 4.121A pdb=" N MET C3957 " --> pdb=" O ALA C3953 " (cutoff:3.500A) removed outlier: 4.341A pdb=" N LYS C3958 " --> pdb=" O HIS C3954 " (cutoff:3.500A) Processing helix chain 'C' and resid 3965 through 3988 removed outlier: 3.942A pdb=" N GLU C3988 " --> pdb=" O LEU C3984 " (cutoff:3.500A) Processing helix chain 'C' and resid 3994 through 4008 Processing helix chain 'C' and resid 4009 through 4030 removed outlier: 4.934A pdb=" N MET C4013 " --> pdb=" O ASN C4009 " (cutoff:3.500A) removed outlier: 3.938A pdb=" N ILE C4014 " --> pdb=" O ASN C4010 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N SER C4029 " --> pdb=" O LYS C4025 " (cutoff:3.500A) removed outlier: 5.174A pdb=" N SER C4030 " --> pdb=" O ASP C4026 " (cutoff:3.500A) Processing helix chain 'C' and resid 4031 through 4038 removed outlier: 6.080A pdb=" N GLU C4035 " --> pdb=" O ASP C4031 " (cutoff:3.500A) removed outlier: 5.125A pdb=" N TYR C4036 " --> pdb=" O THR C4032 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N ASP C4037 " --> pdb=" O PHE C4033 " (cutoff:3.500A) Proline residue: C4038 - end of helix No H-bonds generated for 'chain 'C' and resid 4031 through 4038' Processing helix chain 'C' and resid 4045 through 4057 Processing helix chain 'C' and resid 4060 through 4072 Processing helix chain 'C' and resid 4080 through 4110 removed outlier: 4.829A pdb=" N ARG C4087 " --> pdb=" O GLU C4083 " (cutoff:3.500A) removed outlier: 5.025A pdb=" N PHE C4088 " --> pdb=" O PHE C4084 " (cutoff:3.500A) Proline residue: C4091 - end of helix Processing helix chain 'C' and resid 4113 through 4123 removed outlier: 5.459A pdb=" N GLN C4117 " --> pdb=" O ASP C4113 " (cutoff:3.500A) removed outlier: 4.515A pdb=" N THR C4118 " --> pdb=" O THR C4114 " (cutoff:3.500A) removed outlier: 4.815A pdb=" N PHE C4119 " --> pdb=" O ARG C4115 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N LEU C4122 " --> pdb=" O THR C4118 " (cutoff:3.500A) removed outlier: 4.678A pdb=" N ALA C4123 " --> pdb=" O PHE C4119 " (cutoff:3.500A) Processing helix chain 'C' and resid 4124 through 4131 removed outlier: 4.420A pdb=" N ASN C4128 " --> pdb=" O GLU C4124 " (cutoff:3.500A) Processing helix chain 'C' and resid 4154 through 4163 removed outlier: 3.693A pdb=" N ARG C4158 " --> pdb=" O SER C4154 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N THR C4159 " --> pdb=" O GLU C4155 " (cutoff:3.500A) removed outlier: 4.441A pdb=" N GLN C4160 " --> pdb=" O SER C4156 " (cutoff:3.500A) Processing helix chain 'C' and resid 4164 through 4180 removed outlier: 5.881A pdb=" N GLU C4168 " --> pdb=" O PRO C4164 " (cutoff:3.500A) removed outlier: 4.248A pdb=" N SER C4169 " --> pdb=" O GLN C4165 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N ARG C4171 " --> pdb=" O LYS C4167 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N GLN C4172 " --> pdb=" O GLU C4168 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N GLU C4180 " --> pdb=" O ASP C4176 " (cutoff:3.500A) Processing helix chain 'C' and resid 4185 through 4207 removed outlier: 4.231A pdb=" N ILE C4207 " --> pdb=" O LEU C4203 " (cutoff:3.500A) Processing helix chain 'C' and resid 4486 through 4500 removed outlier: 4.034A pdb=" N GLN C4490 " --> pdb=" O ILE C4486 " (cutoff:3.500A) Processing helix chain 'C' and resid 4501 through 4519 removed outlier: 4.881A pdb=" N MET C4505 " --> pdb=" O TYR C4501 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N ILE C4517 " --> pdb=" O ALA C4513 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N LEU C4519 " --> pdb=" O ASN C4515 " (cutoff:3.500A) Processing helix chain 'C' and resid 4569 through 4614 removed outlier: 3.758A pdb=" N LYS C4595 " --> pdb=" O TYR C4591 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N VAL C4596 " --> pdb=" O TYR C4592 " (cutoff:3.500A) Proline residue: C4597 - end of helix removed outlier: 3.986A pdb=" N PHE C4613 " --> pdb=" O ARG C4609 " (cutoff:3.500A) Processing helix chain 'C' and resid 4626 through 4636 removed outlier: 4.041A pdb=" N GLN C4630 " --> pdb=" O ASP C4626 " (cutoff:3.500A) removed outlier: 4.537A pdb=" N LEU C4634 " --> pdb=" O GLN C4630 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N VAL C4635 " --> pdb=" O TRP C4631 " (cutoff:3.500A) removed outlier: 4.672A pdb=" N ILE C4636 " --> pdb=" O ASP C4632 " (cutoff:3.500A) Processing helix chain 'C' and resid 4649 through 4663 removed outlier: 3.605A pdb=" N LYS C4653 " --> pdb=" O PHE C4649 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N GLY C4659 " --> pdb=" O MET C4655 " (cutoff:3.500A) removed outlier: 5.264A pdb=" N GLU C4660 " --> pdb=" O ASP C4656 " (cutoff:3.500A) removed outlier: 6.542A pdb=" N PHE C4661 " --> pdb=" O LYS C4657 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N TYR C4662 " --> pdb=" O TYR C4658 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N GLY C4663 " --> pdb=" O GLY C4659 " (cutoff:3.500A) Processing helix chain 'C' and resid 4664 through 4672 removed outlier: 3.837A pdb=" N LEU C4671 " --> pdb=" O ILE C4667 " (cutoff:3.500A) Processing helix chain 'C' and resid 4704 through 4717 removed outlier: 3.556A pdb=" N THR C4716 " --> pdb=" O GLY C4712 " (cutoff:3.500A) removed outlier: 3.830A pdb=" N ASP C4717 " --> pdb=" O VAL C4713 " (cutoff:3.500A) Processing helix chain 'C' and resid 4718 through 4737 Processing helix chain 'C' and resid 4738 through 4751 removed outlier: 6.019A pdb=" N ALA C4742 " --> pdb=" O PHE C4738 " (cutoff:3.500A) removed outlier: 5.604A pdb=" N HIS C4743 " --> pdb=" O PHE C4739 " (cutoff:3.500A) removed outlier: 5.648A pdb=" N LEU C4744 " --> pdb=" O PHE C4740 " (cutoff:3.500A) removed outlier: 4.961A pdb=" N LEU C4745 " --> pdb=" O ALA C4741 " (cutoff:3.500A) removed outlier: 4.789A pdb=" N ASP C4746 " --> pdb=" O ALA C4742 " (cutoff:3.500A) removed outlier: 5.301A pdb=" N ILE C4747 " --> pdb=" O HIS C4743 " (cutoff:3.500A) removed outlier: 5.127A pdb=" N ALA C4748 " --> pdb=" O LEU C4744 " (cutoff:3.500A) removed outlier: 5.132A pdb=" N MET C4749 " --> pdb=" O LEU C4745 " (cutoff:3.500A) removed outlier: 4.582A pdb=" N GLY C4750 " --> pdb=" O ASP C4746 " (cutoff:3.500A) removed outlier: 5.298A pdb=" N PHE C4751 " --> pdb=" O ILE C4747 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 4738 through 4751' Processing helix chain 'C' and resid 4755 through 4764 removed outlier: 3.584A pdb=" N HIS C4763 " --> pdb=" O SER C4759 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N ASN C4764 " --> pdb=" O SER C4760 " (cutoff:3.500A) Processing helix chain 'C' and resid 4766 through 4790 removed outlier: 3.967A pdb=" N LEU C4770 " --> pdb=" O LYS C4766 " (cutoff:3.500A) Processing helix chain 'C' and resid 4809 through 4820 Processing helix chain 'C' and resid 4828 through 4833 removed outlier: 4.479A pdb=" N ILE C4832 " --> pdb=" O ILE C4828 " (cutoff:3.500A) removed outlier: 6.727A pdb=" N GLU C4833 " --> pdb=" O GLY C4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 4828 through 4833' Processing helix chain 'C' and resid 4840 through 4857 Processing helix chain 'C' and resid 4859 through 4888 removed outlier: 3.513A pdb=" N PHE C4871 " --> pdb=" O ILE C4867 " (cutoff:3.500A) removed outlier: 4.223A pdb=" N LYS C4882 " --> pdb=" O GLN C4878 " (cutoff:3.500A) removed outlier: 4.808A pdb=" N ASP C4884 " --> pdb=" O GLN C4880 " (cutoff:3.500A) Processing helix chain 'C' and resid 4895 through 4900 removed outlier: 3.892A pdb=" N PHE C4899 " --> pdb=" O GLY C4895 " (cutoff:3.500A) removed outlier: 4.479A pdb=" N ASP C4900 " --> pdb=" O ASN C4896 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 4895 through 4900' Processing helix chain 'C' and resid 4904 through 4912 Processing helix chain 'C' and resid 4915 through 4929 removed outlier: 6.110A pdb=" N TYR C4919 " --> pdb=" O ASN C4915 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N LEU C4920 " --> pdb=" O LEU C4916 " (cutoff:3.500A) Processing helix chain 'C' and resid 4935 through 4948 Processing helix chain 'C' and resid 4958 through 4964 removed outlier: 3.676A pdb=" N TYR C4963 " --> pdb=" O PHE C4959 " (cutoff:3.500A) removed outlier: 4.739A pdb=" N GLU C4964 " --> pdb=" O ARG C4960 " (cutoff:3.500A) Processing helix chain 'C' and resid 398 through 403 removed outlier: 4.148A pdb=" N ASP C 401 " --> pdb=" O HIS C 398 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N GLY C 402 " --> pdb=" O MET C 399 " (cutoff:3.500A) removed outlier: 5.026A pdb=" N LEU C 403 " --> pdb=" O ASP C 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 398 through 403' Processing helix chain 'E' and resid 61 through 66 removed outlier: 5.461A pdb=" N CYS E 65 " --> pdb=" O ASP E 61 " (cutoff:3.500A) removed outlier: 4.082A pdb=" N THR E 66 " --> pdb=" O LEU E 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 61 through 66' Processing helix chain 'E' and resid 74 through 85 removed outlier: 3.738A pdb=" N LEU E 78 " --> pdb=" O SER E 74 " (cutoff:3.500A) removed outlier: 5.360A pdb=" N THR E 85 " --> pdb=" O MET E 81 " (cutoff:3.500A) Processing helix chain 'E' and resid 266 through 271 removed outlier: 5.116A pdb=" N ALA E 271 " --> pdb=" O VAL E 267 " (cutoff:3.500A) Processing helix chain 'E' and resid 409 through 439 removed outlier: 3.698A pdb=" N SER E 413 " --> pdb=" O GLN E 409 " (cutoff:3.500A) removed outlier: 4.857A pdb=" N VAL E 418 " --> pdb=" O ARG E 414 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N LEU E 436 " --> pdb=" O GLY E 432 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N SER E 437 " --> pdb=" O LEU E 433 " (cutoff:3.500A) removed outlier: 4.920A pdb=" N LYS E 438 " --> pdb=" O ASP E 434 " (cutoff:3.500A) removed outlier: 3.784A pdb=" N LYS E 439 " --> pdb=" O ALA E 435 " (cutoff:3.500A) Processing helix chain 'E' and resid 448 through 464 removed outlier: 4.813A pdb=" N VAL E 452 " --> pdb=" O PRO E 448 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N HIS E 464 " --> pdb=" O ILE E 460 " (cutoff:3.500A) Processing helix chain 'E' and resid 471 through 493 removed outlier: 3.507A pdb=" N PHE E 489 " --> pdb=" O ARG E 485 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N GLU E 491 " --> pdb=" O ASN E 487 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N GLU E 492 " --> pdb=" O LEU E 488 " (cutoff:3.500A) Processing helix chain 'E' and resid 494 through 506 Processing helix chain 'E' and resid 519 through 542 removed outlier: 3.982A pdb=" N GLY E 523 " --> pdb=" O GLY E 519 " (cutoff:3.500A) removed outlier: 3.889A pdb=" N GLU E 524 " --> pdb=" O ARG E 520 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N TRP E 526 " --> pdb=" O ALA E 522 " (cutoff:3.500A) removed outlier: 5.932A pdb=" N LYS E 527 " --> pdb=" O GLY E 523 " (cutoff:3.500A) removed outlier: 5.611A pdb=" N SER E 528 " --> pdb=" O GLU E 524 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N ILE E 541 " --> pdb=" O LEU E 537 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N ARG E 542 " --> pdb=" O ALA E 538 " (cutoff:3.500A) Processing helix chain 'E' and resid 544 through 552 removed outlier: 3.860A pdb=" N CYS E 548 " --> pdb=" O ASN E 544 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N SER E 552 " --> pdb=" O CYS E 548 " (cutoff:3.500A) Processing helix chain 'E' and resid 554 through 563 removed outlier: 4.381A pdb=" N GLU E 563 " --> pdb=" O ILE E 559 " (cutoff:3.500A) Processing helix chain 'E' and resid 567 through 582 removed outlier: 3.918A pdb=" N ILE E 571 " --> pdb=" O ALA E 567 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N GLU E 581 " --> pdb=" O CYS E 577 " (cutoff:3.500A) Processing helix chain 'E' and resid 583 through 589 removed outlier: 4.005A pdb=" N ASN E 587 " --> pdb=" O PRO E 583 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N ILE E 588 " --> pdb=" O GLU E 584 " (cutoff:3.500A) Processing helix chain 'E' and resid 590 through 605 removed outlier: 3.791A pdb=" N LEU E 601 " --> pdb=" O ILE E 597 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ASP E 602 " --> pdb=" O ILE E 598 " (cutoff:3.500A) Processing helix chain 'E' and resid 607 through 620 removed outlier: 3.738A pdb=" N LEU E 611 " --> pdb=" O ASN E 607 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N CYS E 620 " --> pdb=" O SER E 616 " (cutoff:3.500A) Processing helix chain 'E' and resid 625 through 636 Processing helix chain 'E' and resid 699 through 704 removed outlier: 5.050A pdb=" N TYR E 703 " --> pdb=" O SER E 699 " (cutoff:3.500A) removed outlier: 4.826A pdb=" N SER E 704 " --> pdb=" O THR E 700 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 699 through 704' Processing helix chain 'E' and resid 821 through 826 Processing helix chain 'E' and resid 878 through 901 removed outlier: 3.705A pdb=" N LYS E 897 " --> pdb=" O TRP E 893 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N GLU E 899 " --> pdb=" O MET E 895 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N LEU E 900 " --> pdb=" O ASN E 896 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N GLY E 901 " --> pdb=" O LYS E 897 " (cutoff:3.500A) Processing helix chain 'E' and resid 929 through 946 removed outlier: 4.366A pdb=" N MET E 935 " --> pdb=" O TYR E 931 " (cutoff:3.500A) removed outlier: 4.135A pdb=" N LEU E 944 " --> pdb=" O LEU E 940 " (cutoff:3.500A) Processing helix chain 'E' and resid 982 through 987 removed outlier: 3.672A pdb=" N ILE E 986 " --> pdb=" O ASP E 982 " (cutoff:3.500A) removed outlier: 5.742A pdb=" N LYS E 987 " --> pdb=" O LEU E 983 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 982 through 987' Processing helix chain 'E' and resid 989 through 1012 removed outlier: 3.917A pdb=" N GLU E 993 " --> pdb=" O THR E 989 " (cutoff:3.500A) Processing helix chain 'E' and resid 1034 through 1039 removed outlier: 5.117A pdb=" N ASP E1039 " --> pdb=" O TYR E1035 " (cutoff:3.500A) Processing helix chain 'E' and resid 1044 through 1061 removed outlier: 3.956A pdb=" N TYR E1060 " --> pdb=" O THR E1056 " (cutoff:3.500A) removed outlier: 4.860A pdb=" N GLY E1061 " --> pdb=" O LEU E1057 " (cutoff:3.500A) Processing helix chain 'E' and resid 1230 through 1235 removed outlier: 6.324A pdb=" N GLU E1234 " --> pdb=" O CYS E1230 " (cutoff:3.500A) Processing helix chain 'E' and resid 1570 through 1576 removed outlier: 4.150A pdb=" N GLU E1574 " --> pdb=" O LEU E1570 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N LYS E1576 " --> pdb=" O LYS E1572 " (cutoff:3.500A) Processing helix chain 'E' and resid 1640 through 1645 removed outlier: 4.431A pdb=" N LEU E1644 " --> pdb=" O ASP E1640 " (cutoff:3.500A) removed outlier: 4.964A pdb=" N THR E1645 " --> pdb=" O ILE E1641 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1640 through 1645' Processing helix chain 'E' and resid 1647 through 1666 removed outlier: 3.725A pdb=" N CYS E1665 " --> pdb=" O TYR E1661 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ALA E1666 " --> pdb=" O SER E1662 " (cutoff:3.500A) Processing helix chain 'E' and resid 1669 through 1681 Processing helix chain 'E' and resid 1682 through 1691 removed outlier: 3.668A pdb=" N GLU E1690 " --> pdb=" O LEU E1686 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N ASN E1691 " --> pdb=" O TYR E1687 " (cutoff:3.500A) Processing helix chain 'E' and resid 1695 through 1710 removed outlier: 3.683A pdb=" N ILE E1707 " --> pdb=" O TYR E1703 " (cutoff:3.500A) Processing helix chain 'E' and resid 1711 through 1722 Processing helix chain 'E' and resid 1730 through 1735 removed outlier: 4.228A pdb=" N LYS E1734 " --> pdb=" O THR E1730 " (cutoff:3.500A) removed outlier: 4.358A pdb=" N SER E1735 " --> pdb=" O GLU E1731 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1730 through 1735' Processing helix chain 'E' and resid 1773 through 1778 removed outlier: 6.142A pdb=" N GLN E1777 " --> pdb=" O ASN E1773 " (cutoff:3.500A) removed outlier: 6.372A pdb=" N TYR E1778 " --> pdb=" O GLU E1774 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1773 through 1778' Processing helix chain 'E' and resid 1783 through 1802 Processing helix chain 'E' and resid 1813 through 1832 Proline residue: E1820 - end of helix removed outlier: 3.689A pdb=" N MET E1831 " --> pdb=" O THR E1827 " (cutoff:3.500A) removed outlier: 4.176A pdb=" N GLY E1832 " --> pdb=" O LEU E1828 " (cutoff:3.500A) Processing helix chain 'E' and resid 1835 through 1848 removed outlier: 3.645A pdb=" N LEU E1839 " --> pdb=" O HIS E1835 " (cutoff:3.500A) Proline residue: E1848 - end of helix Processing helix chain 'E' and resid 1901 through 1945 removed outlier: 4.683A pdb=" N LEU E1909 " --> pdb=" O LEU E1905 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N LEU E1910 " --> pdb=" O GLN E1906 " (cutoff:3.500A) Processing helix chain 'E' and resid 1999 through 2012 removed outlier: 6.440A pdb=" N ASP E2003 " --> pdb=" O ASP E1999 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N LEU E2004 " --> pdb=" O PHE E2000 " (cutoff:3.500A) Processing helix chain 'E' and resid 2024 through 2039 removed outlier: 4.553A pdb=" N TYR E2039 " --> pdb=" O GLU E2035 " (cutoff:3.500A) Processing helix chain 'E' and resid 2058 through 2074 removed outlier: 3.853A pdb=" N LEU E2062 " --> pdb=" O THR E2058 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N SER E2064 " --> pdb=" O GLN E2060 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N GLU E2073 " --> pdb=" O ARG E2069 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N SER E2074 " --> pdb=" O TRP E2070 " (cutoff:3.500A) Processing helix chain 'E' and resid 2078 through 2095 removed outlier: 3.914A pdb=" N VAL E2082 " --> pdb=" O ASP E2078 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N GLY E2095 " --> pdb=" O ARG E2091 " (cutoff:3.500A) Processing helix chain 'E' and resid 2096 through 2106 removed outlier: 3.636A pdb=" N LEU E2103 " --> pdb=" O LEU E2099 " (cutoff:3.500A) Proline residue: E2104 - end of helix Processing helix chain 'E' and resid 2113 through 2134 removed outlier: 3.633A pdb=" N THR E2117 " --> pdb=" O SER E2113 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N SER E2132 " --> pdb=" O ARG E2128 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N VAL E2133 " --> pdb=" O SER E2129 " (cutoff:3.500A) removed outlier: 5.797A pdb=" N ARG E2134 " --> pdb=" O LEU E2130 " (cutoff:3.500A) Processing helix chain 'E' and resid 2138 through 2153 removed outlier: 4.735A pdb=" N LEU E2142 " --> pdb=" O GLU E2138 " (cutoff:3.500A) Processing helix chain 'E' and resid 2154 through 2159 removed outlier: 3.801A pdb=" N GLN E2158 " --> pdb=" O LYS E2154 " (cutoff:3.500A) Processing helix chain 'E' and resid 2160 through 2167 removed outlier: 3.692A pdb=" N GLY E2167 " --> pdb=" O MET E2163 " (cutoff:3.500A) Processing helix chain 'E' and resid 2168 through 2181 removed outlier: 4.560A pdb=" N GLY E2181 " --> pdb=" O VAL E2177 " (cutoff:3.500A) Processing helix chain 'E' and resid 2192 through 2207 removed outlier: 3.625A pdb=" N PHE E2200 " --> pdb=" O ASN E2196 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ARG E2206 " --> pdb=" O CYS E2202 " (cutoff:3.500A) removed outlier: 4.575A pdb=" N ILE E2207 " --> pdb=" O TYR E2203 " (cutoff:3.500A) Processing helix chain 'E' and resid 2208 through 2217 removed outlier: 4.153A pdb=" N ASP E2217 " --> pdb=" O LYS E2213 " (cutoff:3.500A) Processing helix chain 'E' and resid 2218 through 2227 removed outlier: 4.394A pdb=" N SER E2227 " --> pdb=" O LEU E2223 " (cutoff:3.500A) Processing helix chain 'E' and resid 2239 through 2249 removed outlier: 4.149A pdb=" N VAL E2248 " --> pdb=" O ALA E2244 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N MET E2249 " --> pdb=" O ALA E2245 " (cutoff:3.500A) Processing helix chain 'E' and resid 2251 through 2258 Processing helix chain 'E' and resid 2259 through 2271 removed outlier: 4.099A pdb=" N LEU E2263 " --> pdb=" O ARG E2259 " (cutoff:3.500A) removed outlier: 4.569A pdb=" N ALA E2271 " --> pdb=" O VAL E2267 " (cutoff:3.500A) Processing helix chain 'E' and resid 2295 through 2308 removed outlier: 3.831A pdb=" N TYR E2299 " --> pdb=" O GLU E2295 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N PHE E2308 " --> pdb=" O ARG E2304 " (cutoff:3.500A) Processing helix chain 'E' and resid 2314 through 2328 removed outlier: 3.722A pdb=" N ARG E2328 " --> pdb=" O LEU E2324 " (cutoff:3.500A) Processing helix chain 'E' and resid 2343 through 2349 removed outlier: 3.649A pdb=" N ALA E2347 " --> pdb=" O GLY E2343 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N GLU E2349 " --> pdb=" O LEU E2345 " (cutoff:3.500A) Processing helix chain 'E' and resid 2387 through 2403 removed outlier: 4.365A pdb=" N THR E2391 " --> pdb=" O ASN E2387 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N ARG E2402 " --> pdb=" O ASP E2398 " (cutoff:3.500A) removed outlier: 4.812A pdb=" N CYS E2403 " --> pdb=" O LEU E2399 " (cutoff:3.500A) Processing helix chain 'E' and resid 2416 through 2425 removed outlier: 5.400A pdb=" N ILE E2420 " --> pdb=" O GLU E2416 " (cutoff:3.500A) Processing helix chain 'E' and resid 2432 through 2442 removed outlier: 4.137A pdb=" N GLN E2442 " --> pdb=" O SER E2438 " (cutoff:3.500A) Processing helix chain 'E' and resid 2462 through 2477 removed outlier: 4.120A pdb=" N LYS E2466 " --> pdb=" O CYS E2462 " (cutoff:3.500A) removed outlier: 4.696A pdb=" N ALA E2467 " --> pdb=" O PRO E2463 " (cutoff:3.500A) Processing helix chain 'E' and resid 2481 through 2488 removed outlier: 3.955A pdb=" N LEU E2488 " --> pdb=" O PHE E2484 " (cutoff:3.500A) Processing helix chain 'E' and resid 2493 through 2503 removed outlier: 4.343A pdb=" N ALA E2501 " --> pdb=" O LEU E2497 " (cutoff:3.500A) removed outlier: 4.962A pdb=" N SER E2502 " --> pdb=" O ARG E2498 " (cutoff:3.500A) removed outlier: 5.344A pdb=" N LEU E2503 " --> pdb=" O ALA E2499 " (cutoff:3.500A) Processing helix chain 'E' and resid 2511 through 2529 removed outlier: 4.621A pdb=" N ASN E2518 " --> pdb=" O ALA E2514 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N CYS E2522 " --> pdb=" O ASN E2518 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N THR E2523 " --> pdb=" O ARG E2519 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N VAL E2525 " --> pdb=" O LEU E2521 " (cutoff:3.500A) removed outlier: 5.227A pdb=" N LEU E2526 " --> pdb=" O CYS E2522 " (cutoff:3.500A) Proline residue: E2527 - end of helix Processing helix chain 'E' and resid 2536 through 2553 removed outlier: 3.981A pdb=" N LEU E2550 " --> pdb=" O ILE E2546 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N THR E2552 " --> pdb=" O SER E2548 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N VAL E2553 " --> pdb=" O LEU E2549 " (cutoff:3.500A) Processing helix chain 'E' and resid 2558 through 2576 removed outlier: 4.007A pdb=" N LEU E2562 " --> pdb=" O LYS E2558 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N LEU E2575 " --> pdb=" O GLU E2571 " (cutoff:3.500A) removed outlier: 4.063A pdb=" N SER E2576 " --> pdb=" O VAL E2572 " (cutoff:3.500A) Processing helix chain 'E' and resid 2582 through 2601 removed outlier: 3.874A pdb=" N MET E2586 " --> pdb=" O ARG E2582 " (cutoff:3.500A) Proline residue: E2598 - end of helix Processing helix chain 'E' and resid 2605 through 2627 removed outlier: 5.630A pdb=" N LEU E2624 " --> pdb=" O LYS E2620 " (cutoff:3.500A) Proline residue: E2625 - end of helix Processing helix chain 'E' and resid 2634 through 2653 removed outlier: 3.603A pdb=" N GLU E2638 " --> pdb=" O ALA E2634 " (cutoff:3.500A) removed outlier: 3.949A pdb=" N ALA E2652 " --> pdb=" O GLY E2648 " (cutoff:3.500A) removed outlier: 5.529A pdb=" N LEU E2653 " --> pdb=" O ILE E2649 " (cutoff:3.500A) Processing helix chain 'E' and resid 2658 through 2678 Proline residue: E2668 - end of helix Proline residue: E2678 - end of helix Processing helix chain 'E' and resid 2715 through 2741 removed outlier: 3.909A pdb=" N PHE E2721 " --> pdb=" O LYS E2717 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N ASN E2740 " --> pdb=" O ASP E2736 " (cutoff:3.500A) Processing helix chain 'E' and resid 2768 through 2787 removed outlier: 3.806A pdb=" N TYR E2772 " --> pdb=" O GLU E2768 " (cutoff:3.500A) Proline residue: E2775 - end of helix removed outlier: 4.702A pdb=" N TRP E2786 " --> pdb=" O THR E2782 " (cutoff:3.500A) removed outlier: 4.628A pdb=" N GLY E2787 " --> pdb=" O MET E2783 " (cutoff:3.500A) Processing helix chain 'E' and resid 2835 through 2865 removed outlier: 3.980A pdb=" N GLU E2862 " --> pdb=" O LYS E2858 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N SER E2863 " --> pdb=" O LEU E2859 " (cutoff:3.500A) removed outlier: 4.747A pdb=" N LYS E2864 " --> pdb=" O GLU E2860 " (cutoff:3.500A) Processing helix chain 'E' and resid 2879 through 2901 removed outlier: 4.130A pdb=" N LYS E2883 " --> pdb=" O THR E2879 " (cutoff:3.500A) removed outlier: 4.761A pdb=" N ILE E2893 " --> pdb=" O LYS E2889 " (cutoff:3.500A) Processing helix chain 'E' and resid 2983 through 3001 removed outlier: 3.910A pdb=" N ALA E2987 " --> pdb=" O PHE E2983 " (cutoff:3.500A) Proline residue: E2990 - end of helix Processing helix chain 'E' and resid 3009 through 3027 removed outlier: 4.398A pdb=" N GLY E3013 " --> pdb=" O PHE E3009 " (cutoff:3.500A) Processing helix chain 'E' and resid 3035 through 3052 Processing helix chain 'E' and resid 3063 through 3082 removed outlier: 3.992A pdb=" N GLU E3070 " --> pdb=" O ALA E3066 " (cutoff:3.500A) removed outlier: 4.051A pdb=" N THR E3082 " --> pdb=" O GLN E3078 " (cutoff:3.500A) Processing helix chain 'E' and resid 3102 through 3117 removed outlier: 4.089A pdb=" N LEU E3106 " --> pdb=" O LEU E3102 " (cutoff:3.500A) removed outlier: 4.361A pdb=" N GLN E3117 " --> pdb=" O ILE E3113 " (cutoff:3.500A) Processing helix chain 'E' and resid 3124 through 3144 removed outlier: 3.894A pdb=" N GLN E3128 " --> pdb=" O LEU E3124 " (cutoff:3.500A) removed outlier: 5.183A pdb=" N THR E3143 " --> pdb=" O TYR E3139 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N SER E3144 " --> pdb=" O ALA E3140 " (cutoff:3.500A) Processing helix chain 'E' and resid 3149 through 3165 removed outlier: 3.924A pdb=" N ARG E3153 " --> pdb=" O VAL E3149 " (cutoff:3.500A) removed outlier: 5.119A pdb=" N GLY E3165 " --> pdb=" O ALA E3161 " (cutoff:3.500A) Processing helix chain 'E' and resid 3170 through 3183 removed outlier: 4.134A pdb=" N THR E3174 " --> pdb=" O ALA E3170 " (cutoff:3.500A) removed outlier: 5.234A pdb=" N SER E3183 " --> pdb=" O HIS E3179 " (cutoff:3.500A) Processing helix chain 'E' and resid 3613 through 3629 removed outlier: 3.915A pdb=" N ALA E3617 " --> pdb=" O PRO E3613 " (cutoff:3.500A) Processing helix chain 'E' and resid 3636 through 3647 removed outlier: 4.329A pdb=" N LYS E3640 " --> pdb=" O TYR E3636 " (cutoff:3.500A) removed outlier: 5.133A pdb=" N LYS E3647 " --> pdb=" O GLU E3643 " (cutoff:3.500A) Processing helix chain 'E' and resid 3663 through 3678 removed outlier: 3.856A pdb=" N LEU E3677 " --> pdb=" O SER E3673 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N THR E3678 " --> pdb=" O ARG E3674 " (cutoff:3.500A) Processing helix chain 'E' and resid 3686 through 3700 removed outlier: 4.147A pdb=" N ASP E3694 " --> pdb=" O MET E3690 " (cutoff:3.500A) removed outlier: 4.293A pdb=" N CYS E3700 " --> pdb=" O MET E3696 " (cutoff:3.500A) Processing helix chain 'E' and resid 3714 through 3734 removed outlier: 4.876A pdb=" N LYS E3718 " --> pdb=" O SER E3714 " (cutoff:3.500A) Processing helix chain 'E' and resid 3736 through 3749 removed outlier: 3.703A pdb=" N MET E3740 " --> pdb=" O GLY E3736 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N VAL E3741 " --> pdb=" O ALA E3737 " (cutoff:3.500A) removed outlier: 3.776A pdb=" N SER E3748 " --> pdb=" O THR E3744 " (cutoff:3.500A) removed outlier: 5.373A pdb=" N LYS E3749 " --> pdb=" O ILE E3745 " (cutoff:3.500A) Processing helix chain 'E' and resid 3753 through 3768 Processing helix chain 'E' and resid 3771 through 3786 removed outlier: 4.730A pdb=" N GLN E3775 " --> pdb=" O ASN E3771 " (cutoff:3.500A) removed outlier: 4.934A pdb=" N LYS E3786 " --> pdb=" O LEU E3782 " (cutoff:3.500A) Processing helix chain 'E' and resid 3787 through 3801 removed outlier: 4.370A pdb=" N PHE E3791 " --> pdb=" O ASP E3787 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N SER E3800 " --> pdb=" O GLY E3796 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N CYS E3801 " --> pdb=" O LEU E3797 " (cutoff:3.500A) Processing helix chain 'E' and resid 3805 through 3816 removed outlier: 3.688A pdb=" N PHE E3809 " --> pdb=" O ASP E3805 " (cutoff:3.500A) removed outlier: 3.999A pdb=" N GLU E3816 " --> pdb=" O GLN E3812 " (cutoff:3.500A) Processing helix chain 'E' and resid 3833 through 3849 removed outlier: 4.719A pdb=" N THR E3837 " --> pdb=" O ASP E3833 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N CYS E3848 " --> pdb=" O LEU E3844 " (cutoff:3.500A) Processing helix chain 'E' and resid 3852 through 3862 Processing helix chain 'E' and resid 3870 through 3894 removed outlier: 3.631A pdb=" N SER E3874 " --> pdb=" O ASN E3870 " (cutoff:3.500A) Processing helix chain 'E' and resid 3900 through 3926 removed outlier: 3.963A pdb=" N LYS E3909 " --> pdb=" O ARG E3905 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N ILE E3925 " --> pdb=" O LEU E3921 " (cutoff:3.500A) Processing helix chain 'E' and resid 3929 through 3940 removed outlier: 3.873A pdb=" N HIS E3938 " --> pdb=" O GLN E3934 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N ARG E3940 " --> pdb=" O LEU E3936 " (cutoff:3.500A) Processing helix chain 'E' and resid 3941 through 3959 removed outlier: 3.647A pdb=" N HIS E3954 " --> pdb=" O HIS E3950 " (cutoff:3.500A) removed outlier: 4.120A pdb=" N MET E3957 " --> pdb=" O ALA E3953 " (cutoff:3.500A) removed outlier: 4.342A pdb=" N LYS E3958 " --> pdb=" O HIS E3954 " (cutoff:3.500A) Processing helix chain 'E' and resid 3965 through 3988 removed outlier: 3.942A pdb=" N GLU E3988 " --> pdb=" O LEU E3984 " (cutoff:3.500A) Processing helix chain 'E' and resid 3994 through 4008 Processing helix chain 'E' and resid 4009 through 4030 removed outlier: 4.934A pdb=" N MET E4013 " --> pdb=" O ASN E4009 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N ILE E4014 " --> pdb=" O ASN E4010 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N SER E4029 " --> pdb=" O LYS E4025 " (cutoff:3.500A) removed outlier: 5.175A pdb=" N SER E4030 " --> pdb=" O ASP E4026 " (cutoff:3.500A) Processing helix chain 'E' and resid 4031 through 4038 removed outlier: 6.080A pdb=" N GLU E4035 " --> pdb=" O ASP E4031 " (cutoff:3.500A) removed outlier: 5.126A pdb=" N TYR E4036 " --> pdb=" O THR E4032 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N ASP E4037 " --> pdb=" O PHE E4033 " (cutoff:3.500A) Proline residue: E4038 - end of helix No H-bonds generated for 'chain 'E' and resid 4031 through 4038' Processing helix chain 'E' and resid 4045 through 4057 Processing helix chain 'E' and resid 4060 through 4072 Processing helix chain 'E' and resid 4080 through 4110 removed outlier: 4.829A pdb=" N ARG E4087 " --> pdb=" O GLU E4083 " (cutoff:3.500A) removed outlier: 5.025A pdb=" N PHE E4088 " --> pdb=" O PHE E4084 " (cutoff:3.500A) Proline residue: E4091 - end of helix Processing helix chain 'E' and resid 4113 through 4123 removed outlier: 5.459A pdb=" N GLN E4117 " --> pdb=" O ASP E4113 " (cutoff:3.500A) removed outlier: 4.515A pdb=" N THR E4118 " --> pdb=" O THR E4114 " (cutoff:3.500A) removed outlier: 4.815A pdb=" N PHE E4119 " --> pdb=" O ARG E4115 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N LEU E4122 " --> pdb=" O THR E4118 " (cutoff:3.500A) removed outlier: 4.678A pdb=" N ALA E4123 " --> pdb=" O PHE E4119 " (cutoff:3.500A) Processing helix chain 'E' and resid 4124 through 4131 removed outlier: 4.420A pdb=" N ASN E4128 " --> pdb=" O GLU E4124 " (cutoff:3.500A) Processing helix chain 'E' and resid 4154 through 4163 removed outlier: 3.693A pdb=" N ARG E4158 " --> pdb=" O SER E4154 " (cutoff:3.500A) removed outlier: 4.533A pdb=" N THR E4159 " --> pdb=" O GLU E4155 " (cutoff:3.500A) removed outlier: 4.440A pdb=" N GLN E4160 " --> pdb=" O SER E4156 " (cutoff:3.500A) Processing helix chain 'E' and resid 4164 through 4180 removed outlier: 5.880A pdb=" N GLU E4168 " --> pdb=" O PRO E4164 " (cutoff:3.500A) removed outlier: 4.247A pdb=" N SER E4169 " --> pdb=" O GLN E4165 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N ARG E4171 " --> pdb=" O LYS E4167 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N GLN E4172 " --> pdb=" O GLU E4168 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N GLU E4180 " --> pdb=" O ASP E4176 " (cutoff:3.500A) Processing helix chain 'E' and resid 4185 through 4207 removed outlier: 4.231A pdb=" N ILE E4207 " --> pdb=" O LEU E4203 " (cutoff:3.500A) Processing helix chain 'E' and resid 4486 through 4500 removed outlier: 4.032A pdb=" N GLN E4490 " --> pdb=" O ILE E4486 " (cutoff:3.500A) Processing helix chain 'E' and resid 4501 through 4519 removed outlier: 4.881A pdb=" N MET E4505 " --> pdb=" O TYR E4501 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N ILE E4517 " --> pdb=" O ALA E4513 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N LEU E4519 " --> pdb=" O ASN E4515 " (cutoff:3.500A) Processing helix chain 'E' and resid 4569 through 4614 removed outlier: 3.758A pdb=" N LYS E4595 " --> pdb=" O TYR E4591 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N VAL E4596 " --> pdb=" O TYR E4592 " (cutoff:3.500A) Proline residue: E4597 - end of helix removed outlier: 3.986A pdb=" N PHE E4613 " --> pdb=" O ARG E4609 " (cutoff:3.500A) Processing helix chain 'E' and resid 4626 through 4636 removed outlier: 4.041A pdb=" N GLN E4630 " --> pdb=" O ASP E4626 " (cutoff:3.500A) removed outlier: 4.537A pdb=" N LEU E4634 " --> pdb=" O GLN E4630 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N VAL E4635 " --> pdb=" O TRP E4631 " (cutoff:3.500A) removed outlier: 4.672A pdb=" N ILE E4636 " --> pdb=" O ASP E4632 " (cutoff:3.500A) Processing helix chain 'E' and resid 4649 through 4663 removed outlier: 3.605A pdb=" N LYS E4653 " --> pdb=" O PHE E4649 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N GLY E4659 " --> pdb=" O MET E4655 " (cutoff:3.500A) removed outlier: 5.264A pdb=" N GLU E4660 " --> pdb=" O ASP E4656 " (cutoff:3.500A) removed outlier: 6.542A pdb=" N PHE E4661 " --> pdb=" O LYS E4657 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N TYR E4662 " --> pdb=" O TYR E4658 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N GLY E4663 " --> pdb=" O GLY E4659 " (cutoff:3.500A) Processing helix chain 'E' and resid 4664 through 4672 removed outlier: 3.837A pdb=" N LEU E4671 " --> pdb=" O ILE E4667 " (cutoff:3.500A) Processing helix chain 'E' and resid 4704 through 4717 removed outlier: 3.556A pdb=" N THR E4716 " --> pdb=" O GLY E4712 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N ASP E4717 " --> pdb=" O VAL E4713 " (cutoff:3.500A) Processing helix chain 'E' and resid 4718 through 4737 Processing helix chain 'E' and resid 4738 through 4751 removed outlier: 6.019A pdb=" N ALA E4742 " --> pdb=" O PHE E4738 " (cutoff:3.500A) removed outlier: 5.604A pdb=" N HIS E4743 " --> pdb=" O PHE E4739 " (cutoff:3.500A) removed outlier: 5.647A pdb=" N LEU E4744 " --> pdb=" O PHE E4740 " (cutoff:3.500A) removed outlier: 4.961A pdb=" N LEU E4745 " --> pdb=" O ALA E4741 " (cutoff:3.500A) removed outlier: 4.789A pdb=" N ASP E4746 " --> pdb=" O ALA E4742 " (cutoff:3.500A) removed outlier: 5.302A pdb=" N ILE E4747 " --> pdb=" O HIS E4743 " (cutoff:3.500A) removed outlier: 5.127A pdb=" N ALA E4748 " --> pdb=" O LEU E4744 " (cutoff:3.500A) removed outlier: 5.132A pdb=" N MET E4749 " --> pdb=" O LEU E4745 " (cutoff:3.500A) removed outlier: 4.582A pdb=" N GLY E4750 " --> pdb=" O ASP E4746 " (cutoff:3.500A) removed outlier: 5.297A pdb=" N PHE E4751 " --> pdb=" O ILE E4747 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4738 through 4751' Processing helix chain 'E' and resid 4755 through 4764 removed outlier: 3.584A pdb=" N HIS E4763 " --> pdb=" O SER E4759 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N ASN E4764 " --> pdb=" O SER E4760 " (cutoff:3.500A) Processing helix chain 'E' and resid 4766 through 4790 removed outlier: 3.967A pdb=" N LEU E4770 " --> pdb=" O LYS E4766 " (cutoff:3.500A) Processing helix chain 'E' and resid 4809 through 4820 Processing helix chain 'E' and resid 4828 through 4833 removed outlier: 4.479A pdb=" N ILE E4832 " --> pdb=" O ILE E4828 " (cutoff:3.500A) removed outlier: 6.726A pdb=" N GLU E4833 " --> pdb=" O GLY E4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4828 through 4833' Processing helix chain 'E' and resid 4840 through 4857 Processing helix chain 'E' and resid 4859 through 4888 removed outlier: 3.514A pdb=" N PHE E4871 " --> pdb=" O ILE E4867 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N LYS E4882 " --> pdb=" O GLN E4878 " (cutoff:3.500A) removed outlier: 4.809A pdb=" N ASP E4884 " --> pdb=" O GLN E4880 " (cutoff:3.500A) Processing helix chain 'E' and resid 4895 through 4900 removed outlier: 3.891A pdb=" N PHE E4899 " --> pdb=" O GLY E4895 " (cutoff:3.500A) removed outlier: 4.479A pdb=" N ASP E4900 " --> pdb=" O ASN E4896 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4895 through 4900' Processing helix chain 'E' and resid 4904 through 4912 Processing helix chain 'E' and resid 4915 through 4929 removed outlier: 6.110A pdb=" N TYR E4919 " --> pdb=" O ASN E4915 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N LEU E4920 " --> pdb=" O LEU E4916 " (cutoff:3.500A) Processing helix chain 'E' and resid 4935 through 4948 Processing helix chain 'E' and resid 4958 through 4964 removed outlier: 3.676A pdb=" N TYR E4963 " --> pdb=" O PHE E4959 " (cutoff:3.500A) removed outlier: 4.739A pdb=" N GLU E4964 " --> pdb=" O ARG E4960 " (cutoff:3.500A) Processing helix chain 'E' and resid 398 through 403 removed outlier: 4.147A pdb=" N ASP E 401 " --> pdb=" O HIS E 398 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N GLY E 402 " --> pdb=" O MET E 399 " (cutoff:3.500A) removed outlier: 5.027A pdb=" N LEU E 403 " --> pdb=" O ASP E 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 398 through 403' Processing helix chain 'G' and resid 61 through 66 removed outlier: 5.461A pdb=" N CYS G 65 " --> pdb=" O ASP G 61 " (cutoff:3.500A) removed outlier: 4.081A pdb=" N THR G 66 " --> pdb=" O LEU G 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 61 through 66' Processing helix chain 'G' and resid 74 through 85 removed outlier: 3.737A pdb=" N LEU G 78 " --> pdb=" O SER G 74 " (cutoff:3.500A) removed outlier: 5.360A pdb=" N THR G 85 " --> pdb=" O MET G 81 " (cutoff:3.500A) Processing helix chain 'G' and resid 266 through 271 removed outlier: 5.116A pdb=" N ALA G 271 " --> pdb=" O VAL G 267 " (cutoff:3.500A) Processing helix chain 'G' and resid 409 through 439 removed outlier: 3.698A pdb=" N SER G 413 " --> pdb=" O GLN G 409 " (cutoff:3.500A) removed outlier: 4.858A pdb=" N VAL G 418 " --> pdb=" O ARG G 414 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N LEU G 436 " --> pdb=" O GLY G 432 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N SER G 437 " --> pdb=" O LEU G 433 " (cutoff:3.500A) removed outlier: 4.920A pdb=" N LYS G 438 " --> pdb=" O ASP G 434 " (cutoff:3.500A) removed outlier: 3.784A pdb=" N LYS G 439 " --> pdb=" O ALA G 435 " (cutoff:3.500A) Processing helix chain 'G' and resid 448 through 464 removed outlier: 4.813A pdb=" N VAL G 452 " --> pdb=" O PRO G 448 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N HIS G 464 " --> pdb=" O ILE G 460 " (cutoff:3.500A) Processing helix chain 'G' and resid 471 through 493 removed outlier: 3.507A pdb=" N PHE G 489 " --> pdb=" O ARG G 485 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N GLU G 491 " --> pdb=" O ASN G 487 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N GLU G 492 " --> pdb=" O LEU G 488 " (cutoff:3.500A) Processing helix chain 'G' and resid 494 through 506 Processing helix chain 'G' and resid 519 through 542 removed outlier: 3.981A pdb=" N GLY G 523 " --> pdb=" O GLY G 519 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N GLU G 524 " --> pdb=" O ARG G 520 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N TRP G 526 " --> pdb=" O ALA G 522 " (cutoff:3.500A) removed outlier: 5.932A pdb=" N LYS G 527 " --> pdb=" O GLY G 523 " (cutoff:3.500A) removed outlier: 5.611A pdb=" N SER G 528 " --> pdb=" O GLU G 524 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N ILE G 541 " --> pdb=" O LEU G 537 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N ARG G 542 " --> pdb=" O ALA G 538 " (cutoff:3.500A) Processing helix chain 'G' and resid 544 through 552 removed outlier: 3.860A pdb=" N CYS G 548 " --> pdb=" O ASN G 544 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N SER G 552 " --> pdb=" O CYS G 548 " (cutoff:3.500A) Processing helix chain 'G' and resid 554 through 563 removed outlier: 4.381A pdb=" N GLU G 563 " --> pdb=" O ILE G 559 " (cutoff:3.500A) Processing helix chain 'G' and resid 567 through 582 removed outlier: 3.919A pdb=" N ILE G 571 " --> pdb=" O ALA G 567 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N GLU G 581 " --> pdb=" O CYS G 577 " (cutoff:3.500A) Processing helix chain 'G' and resid 583 through 589 removed outlier: 4.006A pdb=" N ASN G 587 " --> pdb=" O PRO G 583 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ILE G 588 " --> pdb=" O GLU G 584 " (cutoff:3.500A) Processing helix chain 'G' and resid 590 through 605 removed outlier: 3.792A pdb=" N LEU G 601 " --> pdb=" O ILE G 597 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ASP G 602 " --> pdb=" O ILE G 598 " (cutoff:3.500A) Processing helix chain 'G' and resid 607 through 620 removed outlier: 3.738A pdb=" N LEU G 611 " --> pdb=" O ASN G 607 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N CYS G 620 " --> pdb=" O SER G 616 " (cutoff:3.500A) Processing helix chain 'G' and resid 625 through 636 Processing helix chain 'G' and resid 699 through 704 removed outlier: 5.050A pdb=" N TYR G 703 " --> pdb=" O SER G 699 " (cutoff:3.500A) removed outlier: 4.825A pdb=" N SER G 704 " --> pdb=" O THR G 700 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 699 through 704' Processing helix chain 'G' and resid 821 through 826 Processing helix chain 'G' and resid 878 through 901 removed outlier: 3.705A pdb=" N LYS G 897 " --> pdb=" O TRP G 893 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N GLU G 899 " --> pdb=" O MET G 895 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LEU G 900 " --> pdb=" O ASN G 896 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N GLY G 901 " --> pdb=" O LYS G 897 " (cutoff:3.500A) Processing helix chain 'G' and resid 929 through 946 removed outlier: 4.366A pdb=" N MET G 935 " --> pdb=" O TYR G 931 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N LEU G 944 " --> pdb=" O LEU G 940 " (cutoff:3.500A) Processing helix chain 'G' and resid 982 through 987 removed outlier: 3.673A pdb=" N ILE G 986 " --> pdb=" O ASP G 982 " (cutoff:3.500A) removed outlier: 5.742A pdb=" N LYS G 987 " --> pdb=" O LEU G 983 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 982 through 987' Processing helix chain 'G' and resid 989 through 1012 removed outlier: 3.917A pdb=" N GLU G 993 " --> pdb=" O THR G 989 " (cutoff:3.500A) Processing helix chain 'G' and resid 1034 through 1039 removed outlier: 5.117A pdb=" N ASP G1039 " --> pdb=" O TYR G1035 " (cutoff:3.500A) Processing helix chain 'G' and resid 1044 through 1061 removed outlier: 3.957A pdb=" N TYR G1060 " --> pdb=" O THR G1056 " (cutoff:3.500A) removed outlier: 4.860A pdb=" N GLY G1061 " --> pdb=" O LEU G1057 " (cutoff:3.500A) Processing helix chain 'G' and resid 1230 through 1235 removed outlier: 6.323A pdb=" N GLU G1234 " --> pdb=" O CYS G1230 " (cutoff:3.500A) Processing helix chain 'G' and resid 1570 through 1576 removed outlier: 4.150A pdb=" N GLU G1574 " --> pdb=" O LEU G1570 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N LYS G1576 " --> pdb=" O LYS G1572 " (cutoff:3.500A) Processing helix chain 'G' and resid 1640 through 1645 removed outlier: 4.430A pdb=" N LEU G1644 " --> pdb=" O ASP G1640 " (cutoff:3.500A) removed outlier: 4.964A pdb=" N THR G1645 " --> pdb=" O ILE G1641 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1640 through 1645' Processing helix chain 'G' and resid 1647 through 1666 removed outlier: 3.725A pdb=" N CYS G1665 " --> pdb=" O TYR G1661 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ALA G1666 " --> pdb=" O SER G1662 " (cutoff:3.500A) Processing helix chain 'G' and resid 1669 through 1681 Processing helix chain 'G' and resid 1682 through 1691 removed outlier: 3.667A pdb=" N GLU G1690 " --> pdb=" O LEU G1686 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N ASN G1691 " --> pdb=" O TYR G1687 " (cutoff:3.500A) Processing helix chain 'G' and resid 1695 through 1710 removed outlier: 3.684A pdb=" N ILE G1707 " --> pdb=" O TYR G1703 " (cutoff:3.500A) Processing helix chain 'G' and resid 1711 through 1722 Processing helix chain 'G' and resid 1730 through 1735 removed outlier: 4.228A pdb=" N LYS G1734 " --> pdb=" O THR G1730 " (cutoff:3.500A) removed outlier: 4.358A pdb=" N SER G1735 " --> pdb=" O GLU G1731 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1730 through 1735' Processing helix chain 'G' and resid 1773 through 1778 removed outlier: 6.141A pdb=" N GLN G1777 " --> pdb=" O ASN G1773 " (cutoff:3.500A) removed outlier: 6.372A pdb=" N TYR G1778 " --> pdb=" O GLU G1774 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1773 through 1778' Processing helix chain 'G' and resid 1783 through 1802 Processing helix chain 'G' and resid 1813 through 1832 Proline residue: G1820 - end of helix removed outlier: 3.689A pdb=" N MET G1831 " --> pdb=" O THR G1827 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N GLY G1832 " --> pdb=" O LEU G1828 " (cutoff:3.500A) Processing helix chain 'G' and resid 1835 through 1848 removed outlier: 3.645A pdb=" N LEU G1839 " --> pdb=" O HIS G1835 " (cutoff:3.500A) Proline residue: G1848 - end of helix Processing helix chain 'G' and resid 1901 through 1945 removed outlier: 4.684A pdb=" N LEU G1909 " --> pdb=" O LEU G1905 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N LEU G1910 " --> pdb=" O GLN G1906 " (cutoff:3.500A) Processing helix chain 'G' and resid 1999 through 2012 removed outlier: 6.440A pdb=" N ASP G2003 " --> pdb=" O ASP G1999 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N LEU G2004 " --> pdb=" O PHE G2000 " (cutoff:3.500A) Processing helix chain 'G' and resid 2024 through 2039 removed outlier: 4.553A pdb=" N TYR G2039 " --> pdb=" O GLU G2035 " (cutoff:3.500A) Processing helix chain 'G' and resid 2058 through 2074 removed outlier: 3.853A pdb=" N LEU G2062 " --> pdb=" O THR G2058 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N SER G2064 " --> pdb=" O GLN G2060 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N GLU G2073 " --> pdb=" O ARG G2069 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N SER G2074 " --> pdb=" O TRP G2070 " (cutoff:3.500A) Processing helix chain 'G' and resid 2078 through 2095 removed outlier: 3.914A pdb=" N VAL G2082 " --> pdb=" O ASP G2078 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N GLY G2095 " --> pdb=" O ARG G2091 " (cutoff:3.500A) Processing helix chain 'G' and resid 2096 through 2106 removed outlier: 3.635A pdb=" N LEU G2103 " --> pdb=" O LEU G2099 " (cutoff:3.500A) Proline residue: G2104 - end of helix Processing helix chain 'G' and resid 2113 through 2134 removed outlier: 3.633A pdb=" N THR G2117 " --> pdb=" O SER G2113 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N SER G2132 " --> pdb=" O ARG G2128 " (cutoff:3.500A) removed outlier: 3.921A pdb=" N VAL G2133 " --> pdb=" O SER G2129 " (cutoff:3.500A) removed outlier: 5.797A pdb=" N ARG G2134 " --> pdb=" O LEU G2130 " (cutoff:3.500A) Processing helix chain 'G' and resid 2138 through 2153 removed outlier: 4.735A pdb=" N LEU G2142 " --> pdb=" O GLU G2138 " (cutoff:3.500A) Processing helix chain 'G' and resid 2154 through 2159 removed outlier: 3.801A pdb=" N GLN G2158 " --> pdb=" O LYS G2154 " (cutoff:3.500A) Processing helix chain 'G' and resid 2160 through 2167 removed outlier: 3.692A pdb=" N GLY G2167 " --> pdb=" O MET G2163 " (cutoff:3.500A) Processing helix chain 'G' and resid 2168 through 2181 removed outlier: 4.560A pdb=" N GLY G2181 " --> pdb=" O VAL G2177 " (cutoff:3.500A) Processing helix chain 'G' and resid 2192 through 2207 removed outlier: 3.625A pdb=" N PHE G2200 " --> pdb=" O ASN G2196 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N ARG G2206 " --> pdb=" O CYS G2202 " (cutoff:3.500A) removed outlier: 4.575A pdb=" N ILE G2207 " --> pdb=" O TYR G2203 " (cutoff:3.500A) Processing helix chain 'G' and resid 2208 through 2217 removed outlier: 4.153A pdb=" N ASP G2217 " --> pdb=" O LYS G2213 " (cutoff:3.500A) Processing helix chain 'G' and resid 2218 through 2227 removed outlier: 4.394A pdb=" N SER G2227 " --> pdb=" O LEU G2223 " (cutoff:3.500A) Processing helix chain 'G' and resid 2239 through 2249 removed outlier: 4.149A pdb=" N VAL G2248 " --> pdb=" O ALA G2244 " (cutoff:3.500A) removed outlier: 3.977A pdb=" N MET G2249 " --> pdb=" O ALA G2245 " (cutoff:3.500A) Processing helix chain 'G' and resid 2251 through 2258 Processing helix chain 'G' and resid 2259 through 2271 removed outlier: 4.099A pdb=" N LEU G2263 " --> pdb=" O ARG G2259 " (cutoff:3.500A) removed outlier: 4.570A pdb=" N ALA G2271 " --> pdb=" O VAL G2267 " (cutoff:3.500A) Processing helix chain 'G' and resid 2295 through 2308 removed outlier: 3.831A pdb=" N TYR G2299 " --> pdb=" O GLU G2295 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N PHE G2308 " --> pdb=" O ARG G2304 " (cutoff:3.500A) Processing helix chain 'G' and resid 2314 through 2328 removed outlier: 3.722A pdb=" N ARG G2328 " --> pdb=" O LEU G2324 " (cutoff:3.500A) Processing helix chain 'G' and resid 2343 through 2349 removed outlier: 3.648A pdb=" N ALA G2347 " --> pdb=" O GLY G2343 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N GLU G2349 " --> pdb=" O LEU G2345 " (cutoff:3.500A) Processing helix chain 'G' and resid 2387 through 2403 removed outlier: 4.365A pdb=" N THR G2391 " --> pdb=" O ASN G2387 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N ARG G2402 " --> pdb=" O ASP G2398 " (cutoff:3.500A) removed outlier: 4.811A pdb=" N CYS G2403 " --> pdb=" O LEU G2399 " (cutoff:3.500A) Processing helix chain 'G' and resid 2416 through 2425 removed outlier: 5.400A pdb=" N ILE G2420 " --> pdb=" O GLU G2416 " (cutoff:3.500A) Processing helix chain 'G' and resid 2432 through 2442 removed outlier: 4.138A pdb=" N GLN G2442 " --> pdb=" O SER G2438 " (cutoff:3.500A) Processing helix chain 'G' and resid 2462 through 2477 removed outlier: 4.120A pdb=" N LYS G2466 " --> pdb=" O CYS G2462 " (cutoff:3.500A) removed outlier: 4.694A pdb=" N ALA G2467 " --> pdb=" O PRO G2463 " (cutoff:3.500A) Processing helix chain 'G' and resid 2481 through 2488 removed outlier: 3.955A pdb=" N LEU G2488 " --> pdb=" O PHE G2484 " (cutoff:3.500A) Processing helix chain 'G' and resid 2493 through 2503 removed outlier: 4.344A pdb=" N ALA G2501 " --> pdb=" O LEU G2497 " (cutoff:3.500A) removed outlier: 4.962A pdb=" N SER G2502 " --> pdb=" O ARG G2498 " (cutoff:3.500A) removed outlier: 5.345A pdb=" N LEU G2503 " --> pdb=" O ALA G2499 " (cutoff:3.500A) Processing helix chain 'G' and resid 2511 through 2529 removed outlier: 4.621A pdb=" N ASN G2518 " --> pdb=" O ALA G2514 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N CYS G2522 " --> pdb=" O ASN G2518 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N THR G2523 " --> pdb=" O ARG G2519 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N VAL G2525 " --> pdb=" O LEU G2521 " (cutoff:3.500A) removed outlier: 5.227A pdb=" N LEU G2526 " --> pdb=" O CYS G2522 " (cutoff:3.500A) Proline residue: G2527 - end of helix Processing helix chain 'G' and resid 2536 through 2553 removed outlier: 3.980A pdb=" N LEU G2550 " --> pdb=" O ILE G2546 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N THR G2552 " --> pdb=" O SER G2548 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N VAL G2553 " --> pdb=" O LEU G2549 " (cutoff:3.500A) Processing helix chain 'G' and resid 2558 through 2576 removed outlier: 4.006A pdb=" N LEU G2562 " --> pdb=" O LYS G2558 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N LEU G2575 " --> pdb=" O GLU G2571 " (cutoff:3.500A) removed outlier: 4.064A pdb=" N SER G2576 " --> pdb=" O VAL G2572 " (cutoff:3.500A) Processing helix chain 'G' and resid 2582 through 2601 removed outlier: 3.874A pdb=" N MET G2586 " --> pdb=" O ARG G2582 " (cutoff:3.500A) Proline residue: G2598 - end of helix Processing helix chain 'G' and resid 2605 through 2627 removed outlier: 5.630A pdb=" N LEU G2624 " --> pdb=" O LYS G2620 " (cutoff:3.500A) Proline residue: G2625 - end of helix Processing helix chain 'G' and resid 2634 through 2653 removed outlier: 3.603A pdb=" N GLU G2638 " --> pdb=" O ALA G2634 " (cutoff:3.500A) removed outlier: 3.948A pdb=" N ALA G2652 " --> pdb=" O GLY G2648 " (cutoff:3.500A) removed outlier: 5.529A pdb=" N LEU G2653 " --> pdb=" O ILE G2649 " (cutoff:3.500A) Processing helix chain 'G' and resid 2658 through 2678 Proline residue: G2668 - end of helix Proline residue: G2678 - end of helix Processing helix chain 'G' and resid 2715 through 2741 removed outlier: 3.910A pdb=" N PHE G2721 " --> pdb=" O LYS G2717 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N ASN G2740 " --> pdb=" O ASP G2736 " (cutoff:3.500A) Processing helix chain 'G' and resid 2768 through 2787 removed outlier: 3.806A pdb=" N TYR G2772 " --> pdb=" O GLU G2768 " (cutoff:3.500A) Proline residue: G2775 - end of helix removed outlier: 4.701A pdb=" N TRP G2786 " --> pdb=" O THR G2782 " (cutoff:3.500A) removed outlier: 4.629A pdb=" N GLY G2787 " --> pdb=" O MET G2783 " (cutoff:3.500A) Processing helix chain 'G' and resid 2835 through 2865 removed outlier: 3.980A pdb=" N GLU G2862 " --> pdb=" O LYS G2858 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N SER G2863 " --> pdb=" O LEU G2859 " (cutoff:3.500A) removed outlier: 4.747A pdb=" N LYS G2864 " --> pdb=" O GLU G2860 " (cutoff:3.500A) Processing helix chain 'G' and resid 2879 through 2901 removed outlier: 4.130A pdb=" N LYS G2883 " --> pdb=" O THR G2879 " (cutoff:3.500A) removed outlier: 4.762A pdb=" N ILE G2893 " --> pdb=" O LYS G2889 " (cutoff:3.500A) Processing helix chain 'G' and resid 2983 through 3001 removed outlier: 3.910A pdb=" N ALA G2987 " --> pdb=" O PHE G2983 " (cutoff:3.500A) Proline residue: G2990 - end of helix Processing helix chain 'G' and resid 3009 through 3027 removed outlier: 4.397A pdb=" N GLY G3013 " --> pdb=" O PHE G3009 " (cutoff:3.500A) Processing helix chain 'G' and resid 3035 through 3052 Processing helix chain 'G' and resid 3063 through 3082 removed outlier: 3.991A pdb=" N GLU G3070 " --> pdb=" O ALA G3066 " (cutoff:3.500A) removed outlier: 4.051A pdb=" N THR G3082 " --> pdb=" O GLN G3078 " (cutoff:3.500A) Processing helix chain 'G' and resid 3102 through 3117 removed outlier: 4.089A pdb=" N LEU G3106 " --> pdb=" O LEU G3102 " (cutoff:3.500A) removed outlier: 4.361A pdb=" N GLN G3117 " --> pdb=" O ILE G3113 " (cutoff:3.500A) Processing helix chain 'G' and resid 3124 through 3144 removed outlier: 3.893A pdb=" N GLN G3128 " --> pdb=" O LEU G3124 " (cutoff:3.500A) removed outlier: 5.183A pdb=" N THR G3143 " --> pdb=" O TYR G3139 " (cutoff:3.500A) removed outlier: 4.327A pdb=" N SER G3144 " --> pdb=" O ALA G3140 " (cutoff:3.500A) Processing helix chain 'G' and resid 3149 through 3165 removed outlier: 3.923A pdb=" N ARG G3153 " --> pdb=" O VAL G3149 " (cutoff:3.500A) removed outlier: 5.119A pdb=" N GLY G3165 " --> pdb=" O ALA G3161 " (cutoff:3.500A) Processing helix chain 'G' and resid 3170 through 3183 removed outlier: 4.134A pdb=" N THR G3174 " --> pdb=" O ALA G3170 " (cutoff:3.500A) removed outlier: 5.234A pdb=" N SER G3183 " --> pdb=" O HIS G3179 " (cutoff:3.500A) Processing helix chain 'G' and resid 3613 through 3629 removed outlier: 3.916A pdb=" N ALA G3617 " --> pdb=" O PRO G3613 " (cutoff:3.500A) Processing helix chain 'G' and resid 3636 through 3647 removed outlier: 4.329A pdb=" N LYS G3640 " --> pdb=" O TYR G3636 " (cutoff:3.500A) removed outlier: 5.133A pdb=" N LYS G3647 " --> pdb=" O GLU G3643 " (cutoff:3.500A) Processing helix chain 'G' and resid 3663 through 3678 removed outlier: 3.856A pdb=" N LEU G3677 " --> pdb=" O SER G3673 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N THR G3678 " --> pdb=" O ARG G3674 " (cutoff:3.500A) Processing helix chain 'G' and resid 3686 through 3700 removed outlier: 4.148A pdb=" N ASP G3694 " --> pdb=" O MET G3690 " (cutoff:3.500A) removed outlier: 4.292A pdb=" N CYS G3700 " --> pdb=" O MET G3696 " (cutoff:3.500A) Processing helix chain 'G' and resid 3714 through 3734 removed outlier: 4.877A pdb=" N LYS G3718 " --> pdb=" O SER G3714 " (cutoff:3.500A) Processing helix chain 'G' and resid 3736 through 3749 removed outlier: 3.704A pdb=" N MET G3740 " --> pdb=" O GLY G3736 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N VAL G3741 " --> pdb=" O ALA G3737 " (cutoff:3.500A) removed outlier: 3.776A pdb=" N SER G3748 " --> pdb=" O THR G3744 " (cutoff:3.500A) removed outlier: 5.373A pdb=" N LYS G3749 " --> pdb=" O ILE G3745 " (cutoff:3.500A) Processing helix chain 'G' and resid 3753 through 3768 Processing helix chain 'G' and resid 3771 through 3786 removed outlier: 4.730A pdb=" N GLN G3775 " --> pdb=" O ASN G3771 " (cutoff:3.500A) removed outlier: 4.934A pdb=" N LYS G3786 " --> pdb=" O LEU G3782 " (cutoff:3.500A) Processing helix chain 'G' and resid 3787 through 3801 removed outlier: 4.370A pdb=" N PHE G3791 " --> pdb=" O ASP G3787 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N SER G3800 " --> pdb=" O GLY G3796 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N CYS G3801 " --> pdb=" O LEU G3797 " (cutoff:3.500A) Processing helix chain 'G' and resid 3805 through 3816 removed outlier: 3.689A pdb=" N PHE G3809 " --> pdb=" O ASP G3805 " (cutoff:3.500A) removed outlier: 3.999A pdb=" N GLU G3816 " --> pdb=" O GLN G3812 " (cutoff:3.500A) Processing helix chain 'G' and resid 3833 through 3849 removed outlier: 4.719A pdb=" N THR G3837 " --> pdb=" O ASP G3833 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N CYS G3848 " --> pdb=" O LEU G3844 " (cutoff:3.500A) Processing helix chain 'G' and resid 3852 through 3862 Processing helix chain 'G' and resid 3870 through 3894 removed outlier: 3.631A pdb=" N SER G3874 " --> pdb=" O ASN G3870 " (cutoff:3.500A) Processing helix chain 'G' and resid 3900 through 3926 removed outlier: 3.962A pdb=" N LYS G3909 " --> pdb=" O ARG G3905 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N ILE G3925 " --> pdb=" O LEU G3921 " (cutoff:3.500A) Processing helix chain 'G' and resid 3929 through 3940 removed outlier: 3.873A pdb=" N HIS G3938 " --> pdb=" O GLN G3934 " (cutoff:3.500A) removed outlier: 4.868A pdb=" N ARG G3940 " --> pdb=" O LEU G3936 " (cutoff:3.500A) Processing helix chain 'G' and resid 3941 through 3959 removed outlier: 3.647A pdb=" N HIS G3954 " --> pdb=" O HIS G3950 " (cutoff:3.500A) removed outlier: 4.120A pdb=" N MET G3957 " --> pdb=" O ALA G3953 " (cutoff:3.500A) removed outlier: 4.341A pdb=" N LYS G3958 " --> pdb=" O HIS G3954 " (cutoff:3.500A) Processing helix chain 'G' and resid 3965 through 3988 removed outlier: 3.942A pdb=" N GLU G3988 " --> pdb=" O LEU G3984 " (cutoff:3.500A) Processing helix chain 'G' and resid 3994 through 4008 Processing helix chain 'G' and resid 4009 through 4030 removed outlier: 4.934A pdb=" N MET G4013 " --> pdb=" O ASN G4009 " (cutoff:3.500A) removed outlier: 3.938A pdb=" N ILE G4014 " --> pdb=" O ASN G4010 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N SER G4029 " --> pdb=" O LYS G4025 " (cutoff:3.500A) removed outlier: 5.175A pdb=" N SER G4030 " --> pdb=" O ASP G4026 " (cutoff:3.500A) Processing helix chain 'G' and resid 4031 through 4038 removed outlier: 6.081A pdb=" N GLU G4035 " --> pdb=" O ASP G4031 " (cutoff:3.500A) removed outlier: 5.126A pdb=" N TYR G4036 " --> pdb=" O THR G4032 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N ASP G4037 " --> pdb=" O PHE G4033 " (cutoff:3.500A) Proline residue: G4038 - end of helix No H-bonds generated for 'chain 'G' and resid 4031 through 4038' Processing helix chain 'G' and resid 4045 through 4057 Processing helix chain 'G' and resid 4060 through 4072 Processing helix chain 'G' and resid 4080 through 4110 removed outlier: 4.829A pdb=" N ARG G4087 " --> pdb=" O GLU G4083 " (cutoff:3.500A) removed outlier: 5.025A pdb=" N PHE G4088 " --> pdb=" O PHE G4084 " (cutoff:3.500A) Proline residue: G4091 - end of helix Processing helix chain 'G' and resid 4113 through 4123 removed outlier: 5.459A pdb=" N GLN G4117 " --> pdb=" O ASP G4113 " (cutoff:3.500A) removed outlier: 4.515A pdb=" N THR G4118 " --> pdb=" O THR G4114 " (cutoff:3.500A) removed outlier: 4.815A pdb=" N PHE G4119 " --> pdb=" O ARG G4115 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N LEU G4122 " --> pdb=" O THR G4118 " (cutoff:3.500A) removed outlier: 4.678A pdb=" N ALA G4123 " --> pdb=" O PHE G4119 " (cutoff:3.500A) Processing helix chain 'G' and resid 4124 through 4131 removed outlier: 4.420A pdb=" N ASN G4128 " --> pdb=" O GLU G4124 " (cutoff:3.500A) Processing helix chain 'G' and resid 4154 through 4163 removed outlier: 3.693A pdb=" N ARG G4158 " --> pdb=" O SER G4154 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N THR G4159 " --> pdb=" O GLU G4155 " (cutoff:3.500A) removed outlier: 4.440A pdb=" N GLN G4160 " --> pdb=" O SER G4156 " (cutoff:3.500A) Processing helix chain 'G' and resid 4164 through 4180 removed outlier: 5.881A pdb=" N GLU G4168 " --> pdb=" O PRO G4164 " (cutoff:3.500A) removed outlier: 4.248A pdb=" N SER G4169 " --> pdb=" O GLN G4165 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N ARG G4171 " --> pdb=" O LYS G4167 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N GLN G4172 " --> pdb=" O GLU G4168 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N GLU G4180 " --> pdb=" O ASP G4176 " (cutoff:3.500A) Processing helix chain 'G' and resid 4185 through 4207 removed outlier: 4.231A pdb=" N ILE G4207 " --> pdb=" O LEU G4203 " (cutoff:3.500A) Processing helix chain 'G' and resid 4486 through 4500 removed outlier: 4.033A pdb=" N GLN G4490 " --> pdb=" O ILE G4486 " (cutoff:3.500A) Processing helix chain 'G' and resid 4501 through 4519 removed outlier: 4.881A pdb=" N MET G4505 " --> pdb=" O TYR G4501 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N ILE G4517 " --> pdb=" O ALA G4513 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N LEU G4519 " --> pdb=" O ASN G4515 " (cutoff:3.500A) Processing helix chain 'G' and resid 4569 through 4614 removed outlier: 3.758A pdb=" N LYS G4595 " --> pdb=" O TYR G4591 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N VAL G4596 " --> pdb=" O TYR G4592 " (cutoff:3.500A) Proline residue: G4597 - end of helix removed outlier: 3.985A pdb=" N PHE G4613 " --> pdb=" O ARG G4609 " (cutoff:3.500A) Processing helix chain 'G' and resid 4626 through 4636 removed outlier: 4.041A pdb=" N GLN G4630 " --> pdb=" O ASP G4626 " (cutoff:3.500A) removed outlier: 4.538A pdb=" N LEU G4634 " --> pdb=" O GLN G4630 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N VAL G4635 " --> pdb=" O TRP G4631 " (cutoff:3.500A) removed outlier: 4.672A pdb=" N ILE G4636 " --> pdb=" O ASP G4632 " (cutoff:3.500A) Processing helix chain 'G' and resid 4649 through 4663 removed outlier: 3.605A pdb=" N LYS G4653 " --> pdb=" O PHE G4649 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N GLY G4659 " --> pdb=" O MET G4655 " (cutoff:3.500A) removed outlier: 5.264A pdb=" N GLU G4660 " --> pdb=" O ASP G4656 " (cutoff:3.500A) removed outlier: 6.542A pdb=" N PHE G4661 " --> pdb=" O LYS G4657 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N TYR G4662 " --> pdb=" O TYR G4658 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N GLY G4663 " --> pdb=" O GLY G4659 " (cutoff:3.500A) Processing helix chain 'G' and resid 4664 through 4672 removed outlier: 3.837A pdb=" N LEU G4671 " --> pdb=" O ILE G4667 " (cutoff:3.500A) Processing helix chain 'G' and resid 4704 through 4717 removed outlier: 3.556A pdb=" N THR G4716 " --> pdb=" O GLY G4712 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N ASP G4717 " --> pdb=" O VAL G4713 " (cutoff:3.500A) Processing helix chain 'G' and resid 4718 through 4737 Processing helix chain 'G' and resid 4738 through 4751 removed outlier: 6.020A pdb=" N ALA G4742 " --> pdb=" O PHE G4738 " (cutoff:3.500A) removed outlier: 5.604A pdb=" N HIS G4743 " --> pdb=" O PHE G4739 " (cutoff:3.500A) removed outlier: 5.647A pdb=" N LEU G4744 " --> pdb=" O PHE G4740 " (cutoff:3.500A) removed outlier: 4.960A pdb=" N LEU G4745 " --> pdb=" O ALA G4741 " (cutoff:3.500A) removed outlier: 4.789A pdb=" N ASP G4746 " --> pdb=" O ALA G4742 " (cutoff:3.500A) removed outlier: 5.301A pdb=" N ILE G4747 " --> pdb=" O HIS G4743 " (cutoff:3.500A) removed outlier: 5.127A pdb=" N ALA G4748 " --> pdb=" O LEU G4744 " (cutoff:3.500A) removed outlier: 5.132A pdb=" N MET G4749 " --> pdb=" O LEU G4745 " (cutoff:3.500A) removed outlier: 4.581A pdb=" N GLY G4750 " --> pdb=" O ASP G4746 " (cutoff:3.500A) removed outlier: 5.297A pdb=" N PHE G4751 " --> pdb=" O ILE G4747 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4738 through 4751' Processing helix chain 'G' and resid 4755 through 4764 removed outlier: 3.584A pdb=" N HIS G4763 " --> pdb=" O SER G4759 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N ASN G4764 " --> pdb=" O SER G4760 " (cutoff:3.500A) Processing helix chain 'G' and resid 4766 through 4790 removed outlier: 3.967A pdb=" N LEU G4770 " --> pdb=" O LYS G4766 " (cutoff:3.500A) Processing helix chain 'G' and resid 4809 through 4820 Processing helix chain 'G' and resid 4828 through 4833 removed outlier: 4.479A pdb=" N ILE G4832 " --> pdb=" O ILE G4828 " (cutoff:3.500A) removed outlier: 6.727A pdb=" N GLU G4833 " --> pdb=" O GLY G4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4828 through 4833' Processing helix chain 'G' and resid 4840 through 4857 Processing helix chain 'G' and resid 4859 through 4888 removed outlier: 3.514A pdb=" N PHE G4871 " --> pdb=" O ILE G4867 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N LYS G4882 " --> pdb=" O GLN G4878 " (cutoff:3.500A) removed outlier: 4.809A pdb=" N ASP G4884 " --> pdb=" O GLN G4880 " (cutoff:3.500A) Processing helix chain 'G' and resid 4895 through 4900 removed outlier: 3.890A pdb=" N PHE G4899 " --> pdb=" O GLY G4895 " (cutoff:3.500A) removed outlier: 4.479A pdb=" N ASP G4900 " --> pdb=" O ASN G4896 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4895 through 4900' Processing helix chain 'G' and resid 4904 through 4912 Processing helix chain 'G' and resid 4915 through 4929 removed outlier: 6.110A pdb=" N TYR G4919 " --> pdb=" O ASN G4915 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N LEU G4920 " --> pdb=" O LEU G4916 " (cutoff:3.500A) Processing helix chain 'G' and resid 4935 through 4948 Processing helix chain 'G' and resid 4958 through 4964 removed outlier: 3.676A pdb=" N TYR G4963 " --> pdb=" O PHE G4959 " (cutoff:3.500A) removed outlier: 4.739A pdb=" N GLU G4964 " --> pdb=" O ARG G4960 " (cutoff:3.500A) Processing helix chain 'G' and resid 398 through 403 removed outlier: 4.147A pdb=" N ASP G 401 " --> pdb=" O HIS G 398 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N GLY G 402 " --> pdb=" O MET G 399 " (cutoff:3.500A) removed outlier: 5.027A pdb=" N LEU G 403 " --> pdb=" O ASP G 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 398 through 403' Processing helix chain 'B' and resid 38 through 43 removed outlier: 3.755A pdb=" N ARG B 42 " --> pdb=" O SER B 38 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N ASN B 43 " --> pdb=" O SER B 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 38 through 43' Processing helix chain 'B' and resid 56 through 67 removed outlier: 5.567A pdb=" N SER B 67 " --> pdb=" O ALA B 63 " (cutoff:3.500A) Processing helix chain 'B' and resid 77 through 82 removed outlier: 3.969A pdb=" N TYR B 82 " --> pdb=" O PRO B 78 " (cutoff:3.500A) Processing helix chain 'D' and resid 38 through 43 removed outlier: 3.755A pdb=" N ARG D 42 " --> pdb=" O SER D 38 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N ASN D 43 " --> pdb=" O SER D 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 38 through 43' Processing helix chain 'D' and resid 56 through 67 removed outlier: 5.567A pdb=" N SER D 67 " --> pdb=" O ALA D 63 " (cutoff:3.500A) Processing helix chain 'D' and resid 77 through 82 removed outlier: 3.969A pdb=" N TYR D 82 " --> pdb=" O PRO D 78 " (cutoff:3.500A) Processing helix chain 'F' and resid 38 through 43 removed outlier: 3.755A pdb=" N ARG F 42 " --> pdb=" O SER F 38 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N ASN F 43 " --> pdb=" O SER F 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 38 through 43' Processing helix chain 'F' and resid 56 through 67 removed outlier: 5.567A pdb=" N SER F 67 " --> pdb=" O ALA F 63 " (cutoff:3.500A) Processing helix chain 'F' and resid 77 through 82 removed outlier: 3.968A pdb=" N TYR F 82 " --> pdb=" O PRO F 78 " (cutoff:3.500A) Processing helix chain 'H' and resid 38 through 43 removed outlier: 3.755A pdb=" N ARG H 42 " --> pdb=" O SER H 38 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N ASN H 43 " --> pdb=" O SER H 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 38 through 43' Processing helix chain 'H' and resid 56 through 67 removed outlier: 5.568A pdb=" N SER H 67 " --> pdb=" O ALA H 63 " (cutoff:3.500A) Processing helix chain 'H' and resid 77 through 82 removed outlier: 3.968A pdb=" N TYR H 82 " --> pdb=" O PRO H 78 " (cutoff:3.500A) Processing sheet with id= 1, first strand: chain 'A' and resid 47 through 52 removed outlier: 6.128A pdb=" N LYS A 34 " --> pdb=" O THR A 52 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N LEU A 35 " --> pdb=" O CYS A 24 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N LEU A 37 " --> pdb=" O LEU A 22 " (cutoff:3.500A) removed outlier: 5.790A pdb=" N LEU A 22 " --> pdb=" O LEU A 37 " (cutoff:3.500A) removed outlier: 10.443A pdb=" N ALA A 39 " --> pdb=" O VAL A 20 " (cutoff:3.500A) removed outlier: 13.491A pdb=" N VAL A 20 " --> pdb=" O ALA A 39 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N ALA A 215 " --> pdb=" O VAL A 21 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N GLN A 23 " --> pdb=" O SER A 213 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N SER A 213 " --> pdb=" O GLN A 23 " (cutoff:3.500A) Processing sheet with id= 2, first strand: chain 'A' and resid 116 through 120 removed outlier: 4.764A pdb=" N HIS A 117 " --> pdb=" O ILE A 162 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'A' and resid 193 through 196 No H-bonds generated for sheet with id= 3 Processing sheet with id= 4, first strand: chain 'A' and resid 244 through 247 removed outlier: 3.551A pdb=" N THR A 246 " --> pdb=" O HIS A 261 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N HIS A 261 " --> pdb=" O THR A 246 " (cutoff:3.500A) Processing sheet with id= 5, first strand: chain 'A' and resid 295 through 299 removed outlier: 3.798A pdb=" N ARG A 298 " --> pdb=" O ARG A 276 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N ASP A 232 " --> pdb=" O LEU A 277 " (cutoff:3.500A) removed outlier: 6.464A pdb=" N VAL A 233 " --> pdb=" O SER A 408 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N SER A 406 " --> pdb=" O ARG A 235 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N ASN A 404 " --> pdb=" O LEU A 237 " (cutoff:3.500A) Processing sheet with id= 6, first strand: chain 'A' and resid 329 through 333 Processing sheet with id= 7, first strand: chain 'A' and resid 372 through 376 Processing sheet with id= 8, first strand: chain 'A' and resid 644 through 651 removed outlier: 4.399A pdb=" N GLN A 645 " --> pdb=" O HIS A1631 " (cutoff:3.500A) removed outlier: 3.656A pdb=" N HIS A1631 " --> pdb=" O GLN A 645 " (cutoff:3.500A) removed outlier: 4.491A pdb=" N VAL A 649 " --> pdb=" O PHE A1627 " (cutoff:3.500A) removed outlier: 6.577A pdb=" N LEU A1625 " --> pdb=" O HIS A 651 " (cutoff:3.500A) Processing sheet with id= 9, first strand: chain 'A' and resid 691 through 696 removed outlier: 4.162A pdb=" N HIS A 692 " --> pdb=" O SER A 795 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N GLY A 696 " --> pdb=" O VAL A 791 " (cutoff:3.500A) Processing sheet with id= 10, first strand: chain 'A' and resid 757 through 761 removed outlier: 4.346A pdb=" N LEU A 761 " --> pdb=" O LYS A 671 " (cutoff:3.500A) removed outlier: 7.924A pdb=" N LYS A 671 " --> pdb=" O LEU A 761 " (cutoff:3.500A) removed outlier: 4.612A pdb=" N GLU A 676 " --> pdb=" O LEU A 803 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N MET A 678 " --> pdb=" O ARG A 801 " (cutoff:3.500A) removed outlier: 6.772A pdb=" N LYS A 799 " --> pdb=" O ASP A 680 " (cutoff:3.500A) Processing sheet with id= 11, first strand: chain 'A' and resid 841 through 844 removed outlier: 6.880A pdb=" N VAL A1212 " --> pdb=" O VAL A1108 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N VAL A1108 " --> pdb=" O VAL A1212 " (cutoff:3.500A) removed outlier: 3.608A pdb=" N ASN A1216 " --> pdb=" O GLU A1104 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N GLU A1104 " --> pdb=" O ASN A1216 " (cutoff:3.500A) removed outlier: 5.075A pdb=" N GLY A1099 " --> pdb=" O MET A1168 " (cutoff:3.500A) removed outlier: 3.768A pdb=" N PHE A1103 " --> pdb=" O CYS A1164 " (cutoff:3.500A) removed outlier: 6.221A pdb=" N PHE A1105 " --> pdb=" O VAL A1162 " (cutoff:3.500A) removed outlier: 5.115A pdb=" N GLY A1163 " --> pdb=" O THR A1176 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N THR A1172 " --> pdb=" O ASP A1167 " (cutoff:3.500A) Processing sheet with id= 12, first strand: chain 'A' and resid 1148 through 1151 removed outlier: 3.718A pdb=" N HIS A1146 " --> pdb=" O GLY A1148 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N GLU A1150 " --> pdb=" O ARG A1144 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N ALA A1136 " --> pdb=" O TRP A1145 " (cutoff:3.500A) removed outlier: 7.495A pdb=" N MET A1113 " --> pdb=" O GLY A1139 " (cutoff:3.500A) removed outlier: 6.184A pdb=" N ASP A1112 " --> pdb=" O GLY A1208 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N PHE A1088 " --> pdb=" O CYS A1205 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N LEU A1207 " --> pdb=" O ARG A1086 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ARG A1086 " --> pdb=" O LEU A1207 " (cutoff:3.500A) removed outlier: 5.818A pdb=" N ILE A1087 " --> pdb=" O SER A1252 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N ARG A1089 " --> pdb=" O TRP A1250 " (cutoff:3.500A) removed outlier: 7.499A pdb=" N THR A1248 " --> pdb=" O GLU A1091 " (cutoff:3.500A) removed outlier: 6.860A pdb=" N MET A1249 " --> pdb=" O PHE A1603 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N PHE A1603 " --> pdb=" O MET A1249 " (cutoff:3.500A) Processing sheet with id= 13, first strand: chain 'A' and resid 1256 through 1260 removed outlier: 3.722A pdb=" N GLN A1257 " --> pdb=" O TRP A1596 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N TRP A1596 " --> pdb=" O GLN A1257 " (cutoff:3.500A) removed outlier: 7.420A pdb=" N LEU A1591 " --> pdb=" O SER A1305 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N SER A1305 " --> pdb=" O LEU A1591 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N ARG A1303 " --> pdb=" O HIS A1593 " (cutoff:3.500A) removed outlier: 5.137A pdb=" N PHE A1301 " --> pdb=" O LEU A1595 " (cutoff:3.500A) removed outlier: 8.789A pdb=" N SER A1597 " --> pdb=" O ILE A1299 " (cutoff:3.500A) removed outlier: 14.326A pdb=" N ILE A1299 " --> pdb=" O SER A1597 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N MET A1300 " --> pdb=" O ALA A1545 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N TYR A1302 " --> pdb=" O VAL A1543 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N LEU A1304 " --> pdb=" O PRO A1541 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ALA A1542 " --> pdb=" O GLY A1444 " (cutoff:3.500A) removed outlier: 4.917A pdb=" N TRP A1442 " --> pdb=" O PHE A1544 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N TRP A1445 " --> pdb=" O MET A1487 " (cutoff:3.500A) removed outlier: 4.675A pdb=" N MET A1487 " --> pdb=" O TRP A1445 " (cutoff:3.500A) Processing sheet with id= 14, first strand: chain 'A' and resid 1268 through 1274 removed outlier: 3.582A pdb=" N GLU A1269 " --> pdb=" O GLY A1291 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N GLY A1291 " --> pdb=" O GLU A1269 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N THR A1271 " --> pdb=" O SER A1289 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N SER A1289 " --> pdb=" O THR A1271 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N LYS A1288 " --> pdb=" O PHE A1555 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N PHE A1290 " --> pdb=" O PHE A1553 " (cutoff:3.500A) removed outlier: 5.951A pdb=" N PHE A1553 " --> pdb=" O PHE A1290 " (cutoff:3.500A) removed outlier: 8.009A pdb=" N VAL A1552 " --> pdb=" O PHE A1433 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N PHE A1433 " --> pdb=" O VAL A1552 " (cutoff:3.500A) Processing sheet with id= 15, first strand: chain 'A' and resid 1726 through 1729 removed outlier: 3.610A pdb=" N ILE A2109 " --> pdb=" O VAL A1727 " (cutoff:3.500A) Processing sheet with id= 16, first strand: chain 'A' and resid 4133 through 4140 removed outlier: 5.726A pdb=" N PHE A4133 " --> pdb=" O ILE A4153 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N ILE A4139 " --> pdb=" O GLU A4147 " (cutoff:3.500A) Processing sheet with id= 17, first strand: chain 'A' and resid 4521 through 4524 removed outlier: 3.550A pdb=" N TYR A4560 " --> pdb=" O LYS A4522 " (cutoff:3.500A) removed outlier: 5.752A pdb=" N VAL A4558 " --> pdb=" O SER A4524 " (cutoff:3.500A) Processing sheet with id= 18, first strand: chain 'C' and resid 47 through 52 removed outlier: 6.129A pdb=" N LYS C 34 " --> pdb=" O THR C 52 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N LEU C 35 " --> pdb=" O CYS C 24 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N LEU C 37 " --> pdb=" O LEU C 22 " (cutoff:3.500A) removed outlier: 5.790A pdb=" N LEU C 22 " --> pdb=" O LEU C 37 " (cutoff:3.500A) removed outlier: 10.443A pdb=" N ALA C 39 " --> pdb=" O VAL C 20 " (cutoff:3.500A) removed outlier: 13.491A pdb=" N VAL C 20 " --> pdb=" O ALA C 39 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N ALA C 215 " --> pdb=" O VAL C 21 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N GLN C 23 " --> pdb=" O SER C 213 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N SER C 213 " --> pdb=" O GLN C 23 " (cutoff:3.500A) Processing sheet with id= 19, first strand: chain 'C' and resid 116 through 120 removed outlier: 4.763A pdb=" N HIS C 117 " --> pdb=" O ILE C 162 " (cutoff:3.500A) Processing sheet with id= 20, first strand: chain 'C' and resid 193 through 196 No H-bonds generated for sheet with id= 20 Processing sheet with id= 21, first strand: chain 'C' and resid 244 through 247 removed outlier: 3.551A pdb=" N THR C 246 " --> pdb=" O HIS C 261 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N HIS C 261 " --> pdb=" O THR C 246 " (cutoff:3.500A) Processing sheet with id= 22, first strand: chain 'C' and resid 295 through 299 removed outlier: 3.798A pdb=" N ARG C 298 " --> pdb=" O ARG C 276 " (cutoff:3.500A) removed outlier: 4.458A pdb=" N ASP C 232 " --> pdb=" O LEU C 277 " (cutoff:3.500A) removed outlier: 6.465A pdb=" N VAL C 233 " --> pdb=" O SER C 408 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N SER C 406 " --> pdb=" O ARG C 235 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N ASN C 404 " --> pdb=" O LEU C 237 " (cutoff:3.500A) Processing sheet with id= 23, first strand: chain 'C' and resid 329 through 333 Processing sheet with id= 24, first strand: chain 'C' and resid 372 through 376 Processing sheet with id= 25, first strand: chain 'C' and resid 644 through 651 removed outlier: 4.399A pdb=" N GLN C 645 " --> pdb=" O HIS C1631 " (cutoff:3.500A) removed outlier: 3.656A pdb=" N HIS C1631 " --> pdb=" O GLN C 645 " (cutoff:3.500A) removed outlier: 4.491A pdb=" N VAL C 649 " --> pdb=" O PHE C1627 " (cutoff:3.500A) removed outlier: 6.577A pdb=" N LEU C1625 " --> pdb=" O HIS C 651 " (cutoff:3.500A) Processing sheet with id= 26, first strand: chain 'C' and resid 691 through 696 removed outlier: 4.163A pdb=" N HIS C 692 " --> pdb=" O SER C 795 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N GLY C 696 " --> pdb=" O VAL C 791 " (cutoff:3.500A) Processing sheet with id= 27, first strand: chain 'C' and resid 757 through 761 removed outlier: 4.346A pdb=" N LEU C 761 " --> pdb=" O LYS C 671 " (cutoff:3.500A) removed outlier: 7.925A pdb=" N LYS C 671 " --> pdb=" O LEU C 761 " (cutoff:3.500A) removed outlier: 4.613A pdb=" N GLU C 676 " --> pdb=" O LEU C 803 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N MET C 678 " --> pdb=" O ARG C 801 " (cutoff:3.500A) removed outlier: 6.773A pdb=" N LYS C 799 " --> pdb=" O ASP C 680 " (cutoff:3.500A) Processing sheet with id= 28, first strand: chain 'C' and resid 841 through 844 removed outlier: 6.880A pdb=" N VAL C1212 " --> pdb=" O VAL C1108 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N VAL C1108 " --> pdb=" O VAL C1212 " (cutoff:3.500A) removed outlier: 3.608A pdb=" N ASN C1216 " --> pdb=" O GLU C1104 " (cutoff:3.500A) removed outlier: 4.369A pdb=" N GLU C1104 " --> pdb=" O ASN C1216 " (cutoff:3.500A) removed outlier: 5.074A pdb=" N GLY C1099 " --> pdb=" O MET C1168 " (cutoff:3.500A) removed outlier: 3.768A pdb=" N PHE C1103 " --> pdb=" O CYS C1164 " (cutoff:3.500A) removed outlier: 6.221A pdb=" N PHE C1105 " --> pdb=" O VAL C1162 " (cutoff:3.500A) removed outlier: 5.115A pdb=" N GLY C1163 " --> pdb=" O THR C1176 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N THR C1172 " --> pdb=" O ASP C1167 " (cutoff:3.500A) Processing sheet with id= 29, first strand: chain 'C' and resid 1148 through 1151 removed outlier: 3.718A pdb=" N HIS C1146 " --> pdb=" O GLY C1148 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N GLU C1150 " --> pdb=" O ARG C1144 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N ALA C1136 " --> pdb=" O TRP C1145 " (cutoff:3.500A) removed outlier: 7.495A pdb=" N MET C1113 " --> pdb=" O GLY C1139 " (cutoff:3.500A) removed outlier: 6.184A pdb=" N ASP C1112 " --> pdb=" O GLY C1208 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N PHE C1088 " --> pdb=" O CYS C1205 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N LEU C1207 " --> pdb=" O ARG C1086 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ARG C1086 " --> pdb=" O LEU C1207 " (cutoff:3.500A) removed outlier: 5.818A pdb=" N ILE C1087 " --> pdb=" O SER C1252 " (cutoff:3.500A) removed outlier: 4.290A pdb=" N ARG C1089 " --> pdb=" O TRP C1250 " (cutoff:3.500A) removed outlier: 7.499A pdb=" N THR C1248 " --> pdb=" O GLU C1091 " (cutoff:3.500A) removed outlier: 6.861A pdb=" N MET C1249 " --> pdb=" O PHE C1603 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N PHE C1603 " --> pdb=" O MET C1249 " (cutoff:3.500A) Processing sheet with id= 30, first strand: chain 'C' and resid 1256 through 1260 removed outlier: 3.721A pdb=" N GLN C1257 " --> pdb=" O TRP C1596 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N TRP C1596 " --> pdb=" O GLN C1257 " (cutoff:3.500A) removed outlier: 7.421A pdb=" N LEU C1591 " --> pdb=" O SER C1305 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N SER C1305 " --> pdb=" O LEU C1591 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N ARG C1303 " --> pdb=" O HIS C1593 " (cutoff:3.500A) removed outlier: 5.137A pdb=" N PHE C1301 " --> pdb=" O LEU C1595 " (cutoff:3.500A) removed outlier: 8.789A pdb=" N SER C1597 " --> pdb=" O ILE C1299 " (cutoff:3.500A) removed outlier: 14.326A pdb=" N ILE C1299 " --> pdb=" O SER C1597 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N MET C1300 " --> pdb=" O ALA C1545 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N TYR C1302 " --> pdb=" O VAL C1543 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N LEU C1304 " --> pdb=" O PRO C1541 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N ALA C1542 " --> pdb=" O GLY C1444 " (cutoff:3.500A) removed outlier: 4.918A pdb=" N TRP C1442 " --> pdb=" O PHE C1544 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N TRP C1445 " --> pdb=" O MET C1487 " (cutoff:3.500A) removed outlier: 4.676A pdb=" N MET C1487 " --> pdb=" O TRP C1445 " (cutoff:3.500A) Processing sheet with id= 31, first strand: chain 'C' and resid 1268 through 1274 removed outlier: 3.582A pdb=" N GLU C1269 " --> pdb=" O GLY C1291 " (cutoff:3.500A) removed outlier: 3.792A pdb=" N GLY C1291 " --> pdb=" O GLU C1269 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N THR C1271 " --> pdb=" O SER C1289 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N SER C1289 " --> pdb=" O THR C1271 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N LYS C1288 " --> pdb=" O PHE C1555 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N PHE C1290 " --> pdb=" O PHE C1553 " (cutoff:3.500A) removed outlier: 5.952A pdb=" N PHE C1553 " --> pdb=" O PHE C1290 " (cutoff:3.500A) removed outlier: 8.008A pdb=" N VAL C1552 " --> pdb=" O PHE C1433 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N PHE C1433 " --> pdb=" O VAL C1552 " (cutoff:3.500A) Processing sheet with id= 32, first strand: chain 'C' and resid 1726 through 1729 removed outlier: 3.611A pdb=" N ILE C2109 " --> pdb=" O VAL C1727 " (cutoff:3.500A) Processing sheet with id= 33, first strand: chain 'C' and resid 4133 through 4140 removed outlier: 5.726A pdb=" N PHE C4133 " --> pdb=" O ILE C4153 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N ILE C4139 " --> pdb=" O GLU C4147 " (cutoff:3.500A) Processing sheet with id= 34, first strand: chain 'C' and resid 4521 through 4524 removed outlier: 3.551A pdb=" N TYR C4560 " --> pdb=" O LYS C4522 " (cutoff:3.500A) removed outlier: 5.752A pdb=" N VAL C4558 " --> pdb=" O SER C4524 " (cutoff:3.500A) Processing sheet with id= 35, first strand: chain 'E' and resid 47 through 52 removed outlier: 6.128A pdb=" N LYS E 34 " --> pdb=" O THR E 52 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N LEU E 35 " --> pdb=" O CYS E 24 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N LEU E 37 " --> pdb=" O LEU E 22 " (cutoff:3.500A) removed outlier: 5.790A pdb=" N LEU E 22 " --> pdb=" O LEU E 37 " (cutoff:3.500A) removed outlier: 10.444A pdb=" N ALA E 39 " --> pdb=" O VAL E 20 " (cutoff:3.500A) removed outlier: 13.492A pdb=" N VAL E 20 " --> pdb=" O ALA E 39 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N ALA E 215 " --> pdb=" O VAL E 21 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N GLN E 23 " --> pdb=" O SER E 213 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N SER E 213 " --> pdb=" O GLN E 23 " (cutoff:3.500A) Processing sheet with id= 36, first strand: chain 'E' and resid 116 through 120 removed outlier: 4.764A pdb=" N HIS E 117 " --> pdb=" O ILE E 162 " (cutoff:3.500A) Processing sheet with id= 37, first strand: chain 'E' and resid 193 through 196 No H-bonds generated for sheet with id= 37 Processing sheet with id= 38, first strand: chain 'E' and resid 244 through 247 removed outlier: 3.551A pdb=" N THR E 246 " --> pdb=" O HIS E 261 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N HIS E 261 " --> pdb=" O THR E 246 " (cutoff:3.500A) Processing sheet with id= 39, first strand: chain 'E' and resid 295 through 299 removed outlier: 3.798A pdb=" N ARG E 298 " --> pdb=" O ARG E 276 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N ASP E 232 " --> pdb=" O LEU E 277 " (cutoff:3.500A) removed outlier: 6.464A pdb=" N VAL E 233 " --> pdb=" O SER E 408 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N SER E 406 " --> pdb=" O ARG E 235 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N ASN E 404 " --> pdb=" O LEU E 237 " (cutoff:3.500A) Processing sheet with id= 40, first strand: chain 'E' and resid 329 through 333 Processing sheet with id= 41, first strand: chain 'E' and resid 372 through 376 Processing sheet with id= 42, first strand: chain 'E' and resid 644 through 651 removed outlier: 4.399A pdb=" N GLN E 645 " --> pdb=" O HIS E1631 " (cutoff:3.500A) removed outlier: 3.656A pdb=" N HIS E1631 " --> pdb=" O GLN E 645 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N VAL E 649 " --> pdb=" O PHE E1627 " (cutoff:3.500A) removed outlier: 6.577A pdb=" N LEU E1625 " --> pdb=" O HIS E 651 " (cutoff:3.500A) Processing sheet with id= 43, first strand: chain 'E' and resid 691 through 696 removed outlier: 4.163A pdb=" N HIS E 692 " --> pdb=" O SER E 795 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N GLY E 696 " --> pdb=" O VAL E 791 " (cutoff:3.500A) Processing sheet with id= 44, first strand: chain 'E' and resid 757 through 761 removed outlier: 4.346A pdb=" N LEU E 761 " --> pdb=" O LYS E 671 " (cutoff:3.500A) removed outlier: 7.924A pdb=" N LYS E 671 " --> pdb=" O LEU E 761 " (cutoff:3.500A) removed outlier: 4.612A pdb=" N GLU E 676 " --> pdb=" O LEU E 803 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N MET E 678 " --> pdb=" O ARG E 801 " (cutoff:3.500A) removed outlier: 6.773A pdb=" N LYS E 799 " --> pdb=" O ASP E 680 " (cutoff:3.500A) Processing sheet with id= 45, first strand: chain 'E' and resid 841 through 844 removed outlier: 6.880A pdb=" N VAL E1212 " --> pdb=" O VAL E1108 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N VAL E1108 " --> pdb=" O VAL E1212 " (cutoff:3.500A) removed outlier: 3.608A pdb=" N ASN E1216 " --> pdb=" O GLU E1104 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N GLU E1104 " --> pdb=" O ASN E1216 " (cutoff:3.500A) removed outlier: 5.074A pdb=" N GLY E1099 " --> pdb=" O MET E1168 " (cutoff:3.500A) removed outlier: 3.768A pdb=" N PHE E1103 " --> pdb=" O CYS E1164 " (cutoff:3.500A) removed outlier: 6.221A pdb=" N PHE E1105 " --> pdb=" O VAL E1162 " (cutoff:3.500A) removed outlier: 5.115A pdb=" N GLY E1163 " --> pdb=" O THR E1176 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N THR E1172 " --> pdb=" O ASP E1167 " (cutoff:3.500A) Processing sheet with id= 46, first strand: chain 'E' and resid 1148 through 1151 removed outlier: 3.718A pdb=" N HIS E1146 " --> pdb=" O GLY E1148 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N GLU E1150 " --> pdb=" O ARG E1144 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N ALA E1136 " --> pdb=" O TRP E1145 " (cutoff:3.500A) removed outlier: 7.495A pdb=" N MET E1113 " --> pdb=" O GLY E1139 " (cutoff:3.500A) removed outlier: 6.184A pdb=" N ASP E1112 " --> pdb=" O GLY E1208 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N PHE E1088 " --> pdb=" O CYS E1205 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N LEU E1207 " --> pdb=" O ARG E1086 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ARG E1086 " --> pdb=" O LEU E1207 " (cutoff:3.500A) removed outlier: 5.817A pdb=" N ILE E1087 " --> pdb=" O SER E1252 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N ARG E1089 " --> pdb=" O TRP E1250 " (cutoff:3.500A) removed outlier: 7.499A pdb=" N THR E1248 " --> pdb=" O GLU E1091 " (cutoff:3.500A) removed outlier: 6.861A pdb=" N MET E1249 " --> pdb=" O PHE E1603 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N PHE E1603 " --> pdb=" O MET E1249 " (cutoff:3.500A) Processing sheet with id= 47, first strand: chain 'E' and resid 1256 through 1260 removed outlier: 3.722A pdb=" N GLN E1257 " --> pdb=" O TRP E1596 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N TRP E1596 " --> pdb=" O GLN E1257 " (cutoff:3.500A) removed outlier: 7.420A pdb=" N LEU E1591 " --> pdb=" O SER E1305 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N SER E1305 " --> pdb=" O LEU E1591 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N ARG E1303 " --> pdb=" O HIS E1593 " (cutoff:3.500A) removed outlier: 5.137A pdb=" N PHE E1301 " --> pdb=" O LEU E1595 " (cutoff:3.500A) removed outlier: 8.790A pdb=" N SER E1597 " --> pdb=" O ILE E1299 " (cutoff:3.500A) removed outlier: 14.326A pdb=" N ILE E1299 " --> pdb=" O SER E1597 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N MET E1300 " --> pdb=" O ALA E1545 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N TYR E1302 " --> pdb=" O VAL E1543 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N LEU E1304 " --> pdb=" O PRO E1541 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ALA E1542 " --> pdb=" O GLY E1444 " (cutoff:3.500A) removed outlier: 4.917A pdb=" N TRP E1442 " --> pdb=" O PHE E1544 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N TRP E1445 " --> pdb=" O MET E1487 " (cutoff:3.500A) removed outlier: 4.675A pdb=" N MET E1487 " --> pdb=" O TRP E1445 " (cutoff:3.500A) Processing sheet with id= 48, first strand: chain 'E' and resid 1268 through 1274 removed outlier: 3.582A pdb=" N GLU E1269 " --> pdb=" O GLY E1291 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N GLY E1291 " --> pdb=" O GLU E1269 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N THR E1271 " --> pdb=" O SER E1289 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N SER E1289 " --> pdb=" O THR E1271 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N LYS E1288 " --> pdb=" O PHE E1555 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N PHE E1290 " --> pdb=" O PHE E1553 " (cutoff:3.500A) removed outlier: 5.952A pdb=" N PHE E1553 " --> pdb=" O PHE E1290 " (cutoff:3.500A) removed outlier: 8.008A pdb=" N VAL E1552 " --> pdb=" O PHE E1433 " (cutoff:3.500A) removed outlier: 3.727A pdb=" N PHE E1433 " --> pdb=" O VAL E1552 " (cutoff:3.500A) Processing sheet with id= 49, first strand: chain 'E' and resid 1726 through 1729 removed outlier: 3.611A pdb=" N ILE E2109 " --> pdb=" O VAL E1727 " (cutoff:3.500A) Processing sheet with id= 50, first strand: chain 'E' and resid 4133 through 4140 removed outlier: 5.726A pdb=" N PHE E4133 " --> pdb=" O ILE E4153 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N ILE E4139 " --> pdb=" O GLU E4147 " (cutoff:3.500A) Processing sheet with id= 51, first strand: chain 'E' and resid 4521 through 4524 removed outlier: 3.551A pdb=" N TYR E4560 " --> pdb=" O LYS E4522 " (cutoff:3.500A) removed outlier: 5.752A pdb=" N VAL E4558 " --> pdb=" O SER E4524 " (cutoff:3.500A) Processing sheet with id= 52, first strand: chain 'G' and resid 47 through 52 removed outlier: 6.129A pdb=" N LYS G 34 " --> pdb=" O THR G 52 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N LEU G 35 " --> pdb=" O CYS G 24 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N LEU G 37 " --> pdb=" O LEU G 22 " (cutoff:3.500A) removed outlier: 5.790A pdb=" N LEU G 22 " --> pdb=" O LEU G 37 " (cutoff:3.500A) removed outlier: 10.444A pdb=" N ALA G 39 " --> pdb=" O VAL G 20 " (cutoff:3.500A) removed outlier: 13.491A pdb=" N VAL G 20 " --> pdb=" O ALA G 39 " (cutoff:3.500A) removed outlier: 3.887A pdb=" N ALA G 215 " --> pdb=" O VAL G 21 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N GLN G 23 " --> pdb=" O SER G 213 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N SER G 213 " --> pdb=" O GLN G 23 " (cutoff:3.500A) Processing sheet with id= 53, first strand: chain 'G' and resid 116 through 120 removed outlier: 4.764A pdb=" N HIS G 117 " --> pdb=" O ILE G 162 " (cutoff:3.500A) Processing sheet with id= 54, first strand: chain 'G' and resid 193 through 196 No H-bonds generated for sheet with id= 54 Processing sheet with id= 55, first strand: chain 'G' and resid 244 through 247 removed outlier: 3.551A pdb=" N THR G 246 " --> pdb=" O HIS G 261 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N HIS G 261 " --> pdb=" O THR G 246 " (cutoff:3.500A) Processing sheet with id= 56, first strand: chain 'G' and resid 295 through 299 removed outlier: 3.798A pdb=" N ARG G 298 " --> pdb=" O ARG G 276 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N ASP G 232 " --> pdb=" O LEU G 277 " (cutoff:3.500A) removed outlier: 6.465A pdb=" N VAL G 233 " --> pdb=" O SER G 408 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N SER G 406 " --> pdb=" O ARG G 235 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N ASN G 404 " --> pdb=" O LEU G 237 " (cutoff:3.500A) Processing sheet with id= 57, first strand: chain 'G' and resid 329 through 333 Processing sheet with id= 58, first strand: chain 'G' and resid 372 through 376 Processing sheet with id= 59, first strand: chain 'G' and resid 644 through 651 removed outlier: 4.399A pdb=" N GLN G 645 " --> pdb=" O HIS G1631 " (cutoff:3.500A) removed outlier: 3.656A pdb=" N HIS G1631 " --> pdb=" O GLN G 645 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N VAL G 649 " --> pdb=" O PHE G1627 " (cutoff:3.500A) removed outlier: 6.577A pdb=" N LEU G1625 " --> pdb=" O HIS G 651 " (cutoff:3.500A) Processing sheet with id= 60, first strand: chain 'G' and resid 691 through 696 removed outlier: 4.163A pdb=" N HIS G 692 " --> pdb=" O SER G 795 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N GLY G 696 " --> pdb=" O VAL G 791 " (cutoff:3.500A) Processing sheet with id= 61, first strand: chain 'G' and resid 757 through 761 removed outlier: 4.346A pdb=" N LEU G 761 " --> pdb=" O LYS G 671 " (cutoff:3.500A) removed outlier: 7.923A pdb=" N LYS G 671 " --> pdb=" O LEU G 761 " (cutoff:3.500A) removed outlier: 4.613A pdb=" N GLU G 676 " --> pdb=" O LEU G 803 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N MET G 678 " --> pdb=" O ARG G 801 " (cutoff:3.500A) removed outlier: 6.774A pdb=" N LYS G 799 " --> pdb=" O ASP G 680 " (cutoff:3.500A) Processing sheet with id= 62, first strand: chain 'G' and resid 841 through 844 removed outlier: 6.880A pdb=" N VAL G1212 " --> pdb=" O VAL G1108 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N VAL G1108 " --> pdb=" O VAL G1212 " (cutoff:3.500A) removed outlier: 3.608A pdb=" N ASN G1216 " --> pdb=" O GLU G1104 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N GLU G1104 " --> pdb=" O ASN G1216 " (cutoff:3.500A) removed outlier: 5.075A pdb=" N GLY G1099 " --> pdb=" O MET G1168 " (cutoff:3.500A) removed outlier: 3.769A pdb=" N PHE G1103 " --> pdb=" O CYS G1164 " (cutoff:3.500A) removed outlier: 6.222A pdb=" N PHE G1105 " --> pdb=" O VAL G1162 " (cutoff:3.500A) removed outlier: 5.115A pdb=" N GLY G1163 " --> pdb=" O THR G1176 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N THR G1172 " --> pdb=" O ASP G1167 " (cutoff:3.500A) Processing sheet with id= 63, first strand: chain 'G' and resid 1148 through 1151 removed outlier: 3.718A pdb=" N HIS G1146 " --> pdb=" O GLY G1148 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N GLU G1150 " --> pdb=" O ARG G1144 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N ALA G1136 " --> pdb=" O TRP G1145 " (cutoff:3.500A) removed outlier: 7.495A pdb=" N MET G1113 " --> pdb=" O GLY G1139 " (cutoff:3.500A) removed outlier: 6.184A pdb=" N ASP G1112 " --> pdb=" O GLY G1208 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N PHE G1088 " --> pdb=" O CYS G1205 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N LEU G1207 " --> pdb=" O ARG G1086 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ARG G1086 " --> pdb=" O LEU G1207 " (cutoff:3.500A) removed outlier: 5.818A pdb=" N ILE G1087 " --> pdb=" O SER G1252 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N ARG G1089 " --> pdb=" O TRP G1250 " (cutoff:3.500A) removed outlier: 7.499A pdb=" N THR G1248 " --> pdb=" O GLU G1091 " (cutoff:3.500A) removed outlier: 6.860A pdb=" N MET G1249 " --> pdb=" O PHE G1603 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N PHE G1603 " --> pdb=" O MET G1249 " (cutoff:3.500A) Processing sheet with id= 64, first strand: chain 'G' and resid 1256 through 1260 removed outlier: 3.721A pdb=" N GLN G1257 " --> pdb=" O TRP G1596 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N TRP G1596 " --> pdb=" O GLN G1257 " (cutoff:3.500A) removed outlier: 7.420A pdb=" N LEU G1591 " --> pdb=" O SER G1305 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N SER G1305 " --> pdb=" O LEU G1591 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N ARG G1303 " --> pdb=" O HIS G1593 " (cutoff:3.500A) removed outlier: 5.137A pdb=" N PHE G1301 " --> pdb=" O LEU G1595 " (cutoff:3.500A) removed outlier: 8.789A pdb=" N SER G1597 " --> pdb=" O ILE G1299 " (cutoff:3.500A) removed outlier: 14.326A pdb=" N ILE G1299 " --> pdb=" O SER G1597 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N MET G1300 " --> pdb=" O ALA G1545 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N TYR G1302 " --> pdb=" O VAL G1543 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N LEU G1304 " --> pdb=" O PRO G1541 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ALA G1542 " --> pdb=" O GLY G1444 " (cutoff:3.500A) removed outlier: 4.918A pdb=" N TRP G1442 " --> pdb=" O PHE G1544 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N TRP G1445 " --> pdb=" O MET G1487 " (cutoff:3.500A) removed outlier: 4.676A pdb=" N MET G1487 " --> pdb=" O TRP G1445 " (cutoff:3.500A) Processing sheet with id= 65, first strand: chain 'G' and resid 1268 through 1274 removed outlier: 3.582A pdb=" N GLU G1269 " --> pdb=" O GLY G1291 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N GLY G1291 " --> pdb=" O GLU G1269 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N THR G1271 " --> pdb=" O SER G1289 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N SER G1289 " --> pdb=" O THR G1271 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N LYS G1288 " --> pdb=" O PHE G1555 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N PHE G1290 " --> pdb=" O PHE G1553 " (cutoff:3.500A) removed outlier: 5.951A pdb=" N PHE G1553 " --> pdb=" O PHE G1290 " (cutoff:3.500A) removed outlier: 8.009A pdb=" N VAL G1552 " --> pdb=" O PHE G1433 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N PHE G1433 " --> pdb=" O VAL G1552 " (cutoff:3.500A) Processing sheet with id= 66, first strand: chain 'G' and resid 1726 through 1729 removed outlier: 3.611A pdb=" N ILE G2109 " --> pdb=" O VAL G1727 " (cutoff:3.500A) Processing sheet with id= 67, first strand: chain 'G' and resid 4133 through 4140 removed outlier: 5.726A pdb=" N PHE G4133 " --> pdb=" O ILE G4153 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N ILE G4139 " --> pdb=" O GLU G4147 " (cutoff:3.500A) Processing sheet with id= 68, first strand: chain 'G' and resid 4521 through 4524 removed outlier: 3.551A pdb=" N TYR G4560 " --> pdb=" O LYS G4522 " (cutoff:3.500A) removed outlier: 5.752A pdb=" N VAL G4558 " --> pdb=" O SER G4524 " (cutoff:3.500A) Processing sheet with id= 69, first strand: chain 'B' and resid 45 through 49 removed outlier: 3.729A pdb=" N LEU B 97 " --> pdb=" O CYS B 76 " (cutoff:3.500A) removed outlier: 3.737A pdb=" N PHE B 99 " --> pdb=" O LEU B 74 " (cutoff:3.500A) removed outlier: 4.064A pdb=" N LEU B 74 " --> pdb=" O PHE B 99 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N LEU B 103 " --> pdb=" O GLN B 70 " (cutoff:3.500A) removed outlier: 4.346A pdb=" N GLN B 70 " --> pdb=" O LEU B 103 " (cutoff:3.500A) Processing sheet with id= 70, first strand: chain 'D' and resid 45 through 49 removed outlier: 3.729A pdb=" N LEU D 97 " --> pdb=" O CYS D 76 " (cutoff:3.500A) removed outlier: 3.737A pdb=" N PHE D 99 " --> pdb=" O LEU D 74 " (cutoff:3.500A) removed outlier: 4.064A pdb=" N LEU D 74 " --> pdb=" O PHE D 99 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N LEU D 103 " --> pdb=" O GLN D 70 " (cutoff:3.500A) removed outlier: 4.345A pdb=" N GLN D 70 " --> pdb=" O LEU D 103 " (cutoff:3.500A) Processing sheet with id= 71, first strand: chain 'F' and resid 45 through 49 removed outlier: 3.729A pdb=" N LEU F 97 " --> pdb=" O CYS F 76 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N PHE F 99 " --> pdb=" O LEU F 74 " (cutoff:3.500A) removed outlier: 4.064A pdb=" N LEU F 74 " --> pdb=" O PHE F 99 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N LEU F 103 " --> pdb=" O GLN F 70 " (cutoff:3.500A) removed outlier: 4.346A pdb=" N GLN F 70 " --> pdb=" O LEU F 103 " (cutoff:3.500A) Processing sheet with id= 72, first strand: chain 'H' and resid 45 through 49 removed outlier: 3.729A pdb=" N LEU H 97 " --> pdb=" O CYS H 76 " (cutoff:3.500A) removed outlier: 3.737A pdb=" N PHE H 99 " --> pdb=" O LEU H 74 " (cutoff:3.500A) removed outlier: 4.064A pdb=" N LEU H 74 " --> pdb=" O PHE H 99 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N LEU H 103 " --> pdb=" O GLN H 70 " (cutoff:3.500A) removed outlier: 4.346A pdb=" N GLN H 70 " --> pdb=" O LEU H 103 " (cutoff:3.500A) 5308 hydrogen bonds defined for protein. 15840 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 0 hydrogen bonds 0 hydrogen bond angles 0 basepair planarities 0 basepair parallelities 0 stacking parallelities Total time for adding SS restraints: 54.77 Time building geometry restraints manager: 33.51 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.18 - 1.31: 18516 1.31 - 1.44: 29381 1.44 - 1.56: 62859 1.56 - 1.69: 28 1.69 - 1.82: 1040 Bond restraints: 111824 Sorted by residual: bond pdb=" C4 ATP C5101 " pdb=" C5 ATP C5101 " ideal model delta sigma weight residual 1.388 1.463 -0.075 1.00e-02 1.00e+04 5.55e+01 bond pdb=" C4 ATP A5101 " pdb=" C5 ATP A5101 " ideal model delta sigma weight residual 1.388 1.463 -0.075 1.00e-02 1.00e+04 5.55e+01 bond pdb=" C4 ATP E5101 " pdb=" C5 ATP E5101 " ideal model delta sigma weight residual 1.388 1.463 -0.075 1.00e-02 1.00e+04 5.55e+01 bond pdb=" C4 ATP G5101 " pdb=" C5 ATP G5101 " ideal model delta sigma weight residual 1.388 1.463 -0.075 1.00e-02 1.00e+04 5.55e+01 bond pdb=" C5 ATP E5101 " pdb=" C6 ATP E5101 " ideal model delta sigma weight residual 1.409 1.464 -0.055 1.00e-02 1.00e+04 3.06e+01 ... (remaining 111819 not shown) Histogram of bond angle deviations from ideal: 96.60 - 105.22: 1967 105.22 - 113.85: 63341 113.85 - 122.48: 70370 122.48 - 131.11: 15051 131.11 - 139.74: 491 Bond angle restraints: 151220 Sorted by residual: angle pdb=" PB ATP E5101 " pdb=" O3B ATP E5101 " pdb=" PG ATP E5101 " ideal model delta sigma weight residual 139.87 122.08 17.79 1.00e+00 1.00e+00 3.17e+02 angle pdb=" PB ATP A5101 " pdb=" O3B ATP A5101 " pdb=" PG ATP A5101 " ideal model delta sigma weight residual 139.87 122.08 17.79 1.00e+00 1.00e+00 3.17e+02 angle pdb=" PB ATP C5101 " pdb=" O3B ATP C5101 " pdb=" PG ATP C5101 " ideal model delta sigma weight residual 139.87 122.08 17.79 1.00e+00 1.00e+00 3.17e+02 angle pdb=" PB ATP G5101 " pdb=" O3B ATP G5101 " pdb=" PG ATP G5101 " ideal model delta sigma weight residual 139.87 122.10 17.77 1.00e+00 1.00e+00 3.16e+02 angle pdb=" PA ATP C5101 " pdb=" O3A ATP C5101 " pdb=" PB ATP C5101 " ideal model delta sigma weight residual 136.83 120.74 16.09 1.00e+00 1.00e+00 2.59e+02 ... (remaining 151215 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 17.82: 62730 17.82 - 35.65: 3252 35.65 - 53.47: 598 53.47 - 71.29: 48 71.29 - 89.11: 56 Dihedral angle restraints: 66684 sinusoidal: 25272 harmonic: 41412 Sorted by residual: dihedral pdb=" CA GLU E1847 " pdb=" C GLU E1847 " pdb=" N PRO E1848 " pdb=" CA PRO E1848 " ideal model delta harmonic sigma weight residual -180.00 -113.15 -66.85 0 5.00e+00 4.00e-02 1.79e+02 dihedral pdb=" CA GLU A1847 " pdb=" C GLU A1847 " pdb=" N PRO A1848 " pdb=" CA PRO A1848 " ideal model delta harmonic sigma weight residual -180.00 -113.15 -66.85 0 5.00e+00 4.00e-02 1.79e+02 dihedral pdb=" CA GLU C1847 " pdb=" C GLU C1847 " pdb=" N PRO C1848 " pdb=" CA PRO C1848 " ideal model delta harmonic sigma weight residual -180.00 -113.18 -66.82 0 5.00e+00 4.00e-02 1.79e+02 ... (remaining 66681 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.065: 13245 0.065 - 0.130: 3194 0.130 - 0.194: 515 0.194 - 0.259: 54 0.259 - 0.324: 20 Chirality restraints: 17028 Sorted by residual: chirality pdb=" CB THR G 854 " pdb=" CA THR G 854 " pdb=" OG1 THR G 854 " pdb=" CG2 THR G 854 " both_signs ideal model delta sigma weight residual False 2.55 2.23 0.32 2.00e-01 2.50e+01 2.62e+00 chirality pdb=" CB THR A 854 " pdb=" CA THR A 854 " pdb=" OG1 THR A 854 " pdb=" CG2 THR A 854 " both_signs ideal model delta sigma weight residual False 2.55 2.23 0.32 2.00e-01 2.50e+01 2.62e+00 chirality pdb=" CB THR E 854 " pdb=" CA THR E 854 " pdb=" OG1 THR E 854 " pdb=" CG2 THR E 854 " both_signs ideal model delta sigma weight residual False 2.55 2.23 0.32 2.00e-01 2.50e+01 2.59e+00 ... (remaining 17025 not shown) Planarity restraints: 19432 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" C GLN A4131 " -0.071 5.00e-02 4.00e+02 1.09e-01 1.89e+01 pdb=" N PRO A4132 " 0.188 5.00e-02 4.00e+02 pdb=" CA PRO A4132 " -0.057 5.00e-02 4.00e+02 pdb=" CD PRO A4132 " -0.060 5.00e-02 4.00e+02 delta sigma weight rms_deltas residual plane pdb=" C GLN G4131 " -0.071 5.00e-02 4.00e+02 1.09e-01 1.89e+01 pdb=" N PRO G4132 " 0.188 5.00e-02 4.00e+02 pdb=" CA PRO G4132 " -0.056 5.00e-02 4.00e+02 pdb=" CD PRO G4132 " -0.060 5.00e-02 4.00e+02 delta sigma weight rms_deltas residual plane pdb=" C GLN C4131 " -0.071 5.00e-02 4.00e+02 1.09e-01 1.89e+01 pdb=" N PRO C4132 " 0.188 5.00e-02 4.00e+02 pdb=" CA PRO C4132 " -0.056 5.00e-02 4.00e+02 pdb=" CD PRO C4132 " -0.060 5.00e-02 4.00e+02 ... (remaining 19429 not shown) Histogram of nonbonded interaction distances: 2.20 - 2.74: 11138 2.74 - 3.28: 107780 3.28 - 3.82: 181208 3.82 - 4.36: 201496 4.36 - 4.90: 336178 Nonbonded interactions: 837800 Sorted by model distance: nonbonded pdb=" OE1 GLN A4767 " pdb=" NH2 ARG C4875 " model vdw 2.204 2.520 nonbonded pdb=" OE1 GLN C4767 " pdb=" NH2 ARG E4875 " model vdw 2.205 2.520 nonbonded pdb=" NH2 ARG A4875 " pdb=" OE1 GLN G4767 " model vdw 2.209 2.520 nonbonded pdb=" OE1 GLN E4767 " pdb=" NH2 ARG G4875 " model vdw 2.214 2.520 nonbonded pdb=" O PHE G3918 " pdb=" OG1 THR G3922 " model vdw 2.215 2.440 ... (remaining 837795 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model Found NCS groups: ncs_group { reference = chain 'A' selection = chain 'C' selection = chain 'E' selection = chain 'G' } ncs_group { reference = chain 'B' selection = chain 'D' selection = chain 'F' selection = chain 'H' } Set up NCS constraints No NCS constraints will be used in refinement. Set refine NCS operators Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=0.99 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as group one per residue Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 2.380 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.000 Assert all atoms have isotropic ADPs: 0.010 Construct map_model_manager: 0.060 Extract box with map and model: 17.170 Check model and map are aligned: 1.200 Set scattering table: 0.770 Process input model: 257.250 Find NCS groups from input model: 5.030 Set up NCS constraints: 0.590 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.000 Extract rigid body selections: 0.000 Check and reset occupancies: 0.020 Load rotamer database and sin/cos tables:2.100 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 286.580 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7654 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.007 0.086 111824 Z= 0.455 Angle : 1.146 17.792 151220 Z= 0.618 Chirality : 0.057 0.324 17028 Planarity : 0.007 0.109 19432 Dihedral : 11.777 89.113 39828 Min Nonbonded Distance : 2.204 Molprobity Statistics. All-atom Clashscore : 7.43 Ramachandran Plot: Outliers : 0.26 % Allowed : 12.88 % Favored : 86.86 % Rotamer: Outliers : 0.86 % Allowed : 4.61 % Favored : 94.53 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.38 % Twisted Proline : 4.10 % Twisted General : 0.59 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -4.44 (0.06), residues: 13844 helix: -2.09 (0.05), residues: 6748 sheet: -3.57 (0.14), residues: 1092 loop : -3.83 (0.07), residues: 6004 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.031 0.003 TRP E1250 HIS 0.015 0.003 HIS E1654 PHE 0.052 0.004 PHE A4847 TYR 0.035 0.003 TYR C3692 ARG 0.011 0.001 ARG E4047 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 27688 Ramachandran restraints generated. 13844 Oldfield, 0 Emsley, 13844 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 27688 Ramachandran restraints generated. 13844 Oldfield, 0 Emsley, 13844 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 2162 residues out of total 12576 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 103 poor density : 2059 time to evaluate : 9.407 Fit side-chains revert: symmetry clash Traceback (most recent call last): File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/build/../modules/phenix/phenix/command_line/real_space_refine.py", line 8, in run_program(real_space_refine.Program) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/iotbx/cli_parser.py", line 944, in run_program task.run() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/programs/real_space_refine.py", line 189, in run log = self.logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/rsr/wrappers.py", line 58, in __init__ log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 303, in __init__ self.caller(self.optimize_sidechains) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 321, in caller func() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 609, in optimize_sidechains log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 83, in __init__ rotatable_hd = self.rotatable_hd) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 189, in run_one pdb_hierarchy = self.run_one_one(args=args) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 133, in run_one_one log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 108, in __init__ self.loop(function = self.one_residue_iteration) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 284, in loop function(residue = residue) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 271, in one_residue_iteration log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 172, in __init__ self.fit_proline() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 217, in fit_proline for rotamer, sites_cart in rotamer_iterator: TypeError: 'NoneType' object is not iterable