Starting phenix.real_space_refine on Fri Jan 19 04:33:40 2024 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jii_9834/01_2024/6jii_9834_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jii_9834/01_2024/6jii_9834.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=4.2 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jii_9834/01_2024/6jii_9834.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jii_9834/01_2024/6jii_9834.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jii_9834/01_2024/6jii_9834_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jii_9834/01_2024/6jii_9834_updated.pdb" } resolution = 4.2 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= 0.001 sd= 0.005 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 7 Type Number sf(0) Gaussians Ca 4 9.91 5 Zn 4 6.06 5 P 12 5.49 5 S 688 5.16 5 C 73120 2.51 5 N 19712 2.21 5 O 21488 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "A ARG 13": "NH1" <-> "NH2" Residue "B PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 190": "NH1" <-> "NH2" Residue "B ARG 257": "NH1" <-> "NH2" Residue "B ARG 414": "NH1" <-> "NH2" Residue "B ARG 420": "NH1" <-> "NH2" Residue "B ARG 478": "NH1" <-> "NH2" Residue "B TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 1944": "NH1" <-> "NH2" Residue "B TYR 2107": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 2519": "NH1" <-> "NH2" Residue "B ARG 3616": "NH1" <-> "NH2" Residue "B ARG 3940": "NH1" <-> "NH2" Residue "B ARG 4148": "NH1" <-> "NH2" Residue "B ARG 4158": "NH1" <-> "NH2" Residue "B ARG 4171": "NH1" <-> "NH2" Residue "B PHE 4496": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 4498": "NH1" <-> "NH2" Residue "B ARG 4504": "NH1" <-> "NH2" Residue "B ARG 4609": "NH1" <-> "NH2" Residue "B PHE 4739": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 4755": "NH1" <-> "NH2" Residue "B ARG 4791": "NH1" <-> "NH2" Residue "B PHE 4853": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 4875": "NH1" <-> "NH2" Residue "D ARG 13": "NH1" <-> "NH2" Residue "E PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 190": "NH1" <-> "NH2" Residue "E ARG 257": "NH1" <-> "NH2" Residue "E ARG 414": "NH1" <-> "NH2" Residue "E ARG 420": "NH1" <-> "NH2" Residue "E ARG 478": "NH1" <-> "NH2" Residue "E TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 1944": "NH1" <-> "NH2" Residue "E TYR 2107": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 2519": "NH1" <-> "NH2" Residue "E ARG 3616": "NH1" <-> "NH2" Residue "E ARG 3940": "NH1" <-> "NH2" Residue "E ARG 4148": "NH1" <-> "NH2" Residue "E ARG 4158": "NH1" <-> "NH2" Residue "E ARG 4171": "NH1" <-> "NH2" Residue "E PHE 4496": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4498": "NH1" <-> "NH2" Residue "E ARG 4504": "NH1" <-> "NH2" Residue "E ARG 4609": "NH1" <-> "NH2" Residue "E PHE 4739": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4755": "NH1" <-> "NH2" Residue "E ARG 4791": "NH1" <-> "NH2" Residue "E PHE 4853": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4875": "NH1" <-> "NH2" Residue "G ARG 13": "NH1" <-> "NH2" Residue "H PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 190": "NH1" <-> "NH2" Residue "H ARG 257": "NH1" <-> "NH2" Residue "H ARG 414": "NH1" <-> "NH2" Residue "H ARG 420": "NH1" <-> "NH2" Residue "H ARG 478": "NH1" <-> "NH2" Residue "H TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 1944": "NH1" <-> "NH2" Residue "H TYR 2107": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 2519": "NH1" <-> "NH2" Residue "H ARG 3616": "NH1" <-> "NH2" Residue "H ARG 3940": "NH1" <-> "NH2" Residue "H ARG 4148": "NH1" <-> "NH2" Residue "H ARG 4158": "NH1" <-> "NH2" Residue "H ARG 4171": "NH1" <-> "NH2" Residue "H PHE 4496": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 4498": "NH1" <-> "NH2" Residue "H ARG 4504": "NH1" <-> "NH2" Residue "H ARG 4609": "NH1" <-> "NH2" Residue "H PHE 4739": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 4755": "NH1" <-> "NH2" Residue "H ARG 4791": "NH1" <-> "NH2" Residue "H PHE 4853": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 4875": "NH1" <-> "NH2" Residue "J ARG 13": "NH1" <-> "NH2" Residue "K PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K ARG 190": "NH1" <-> "NH2" Residue "K ARG 257": "NH1" <-> "NH2" Residue "K ARG 414": "NH1" <-> "NH2" Residue "K ARG 420": "NH1" <-> "NH2" Residue "K ARG 478": "NH1" <-> "NH2" Residue "K TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K ARG 1944": "NH1" <-> "NH2" Residue "K TYR 2107": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K ARG 2519": "NH1" <-> "NH2" Residue "K ARG 3616": "NH1" <-> "NH2" Residue "K ARG 3940": "NH1" <-> "NH2" Residue "K ARG 4148": "NH1" <-> "NH2" Residue "K ARG 4158": "NH1" <-> "NH2" Residue "K ARG 4171": "NH1" <-> "NH2" Residue "K PHE 4496": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K ARG 4498": "NH1" <-> "NH2" Residue "K ARG 4504": "NH1" <-> "NH2" Residue "K ARG 4609": "NH1" <-> "NH2" Residue "K PHE 4739": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K ARG 4755": "NH1" <-> "NH2" Residue "K ARG 4791": "NH1" <-> "NH2" Residue "K PHE 4853": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K ARG 4875": "NH1" <-> "NH2" Time to flip residues: 0.25s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/chem_data/mon_lib" Total number of atoms: 115028 Number of models: 1 Model: "" Number of chains: 16 Chain: "A" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "B" Number of atoms: 26813 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3508, 26813 Classifications: {'peptide': 3508} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 345} Link IDs: {'PTRANS': 122, 'TRANS': 3385} Chain breaks: 60 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1413 Unresolved non-hydrogen angles: 1799 Unresolved non-hydrogen dihedrals: 1175 Unresolved non-hydrogen chiralities: 123 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 15, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 20, 'PHE:plan': 17, 'GLU:plan': 34, 'ARG:plan': 29} Unresolved non-hydrogen planarities: 774 Chain: "C" Number of atoms: 1078 Number of conformers: 1 Conformer: "" Number of residues, atoms: 138, 1078 Classifications: {'peptide': 138} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PTRANS': 2, 'TRANS': 135} Chain breaks: 2 Unresolved non-hydrogen bonds: 3 Unresolved non-hydrogen angles: 4 Unresolved non-hydrogen dihedrals: 2 Planarities with less than four sites: {'ASP:plan': 1} Unresolved non-hydrogen planarities: 3 Chain: "D" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "E" Number of atoms: 26813 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3508, 26813 Classifications: {'peptide': 3508} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 345} Link IDs: {'PTRANS': 122, 'TRANS': 3385} Chain breaks: 60 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1413 Unresolved non-hydrogen angles: 1799 Unresolved non-hydrogen dihedrals: 1175 Unresolved non-hydrogen chiralities: 123 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 15, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 20, 'PHE:plan': 17, 'GLU:plan': 34, 'ARG:plan': 29} Unresolved non-hydrogen planarities: 774 Chain: "F" Number of atoms: 1078 Number of conformers: 1 Conformer: "" Number of residues, atoms: 138, 1078 Classifications: {'peptide': 138} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PTRANS': 2, 'TRANS': 135} Chain breaks: 2 Unresolved non-hydrogen bonds: 3 Unresolved non-hydrogen angles: 4 Unresolved non-hydrogen dihedrals: 2 Planarities with less than four sites: {'ASP:plan': 1} Unresolved non-hydrogen planarities: 3 Chain: "G" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "H" Number of atoms: 26813 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3508, 26813 Classifications: {'peptide': 3508} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 345} Link IDs: {'PTRANS': 122, 'TRANS': 3385} Chain breaks: 60 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1413 Unresolved non-hydrogen angles: 1799 Unresolved non-hydrogen dihedrals: 1174 Unresolved non-hydrogen chiralities: 123 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 15, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 20, 'PHE:plan': 17, 'GLU:plan': 34, 'ARG:plan': 29} Unresolved non-hydrogen planarities: 774 Chain: "I" Number of atoms: 1078 Number of conformers: 1 Conformer: "" Number of residues, atoms: 138, 1078 Classifications: {'peptide': 138} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PTRANS': 2, 'TRANS': 135} Chain breaks: 2 Unresolved non-hydrogen bonds: 3 Unresolved non-hydrogen angles: 4 Unresolved non-hydrogen dihedrals: 2 Planarities with less than four sites: {'ASP:plan': 1} Unresolved non-hydrogen planarities: 3 Chain: "J" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "K" Number of atoms: 26813 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3508, 26813 Classifications: {'peptide': 3508} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 345} Link IDs: {'PTRANS': 122, 'TRANS': 3385} Chain breaks: 60 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1413 Unresolved non-hydrogen angles: 1799 Unresolved non-hydrogen dihedrals: 1174 Unresolved non-hydrogen chiralities: 123 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 15, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 20, 'PHE:plan': 17, 'GLU:plan': 34, 'ARG:plan': 29} Unresolved non-hydrogen planarities: 774 Chain: "L" Number of atoms: 1078 Number of conformers: 1 Conformer: "" Number of residues, atoms: 138, 1078 Classifications: {'peptide': 138} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PTRANS': 2, 'TRANS': 135} Chain breaks: 2 Unresolved non-hydrogen bonds: 3 Unresolved non-hydrogen angles: 4 Unresolved non-hydrogen dihedrals: 2 Planarities with less than four sites: {'ASP:plan': 1} Unresolved non-hydrogen planarities: 3 Chain: "B" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "E" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "H" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "K" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} List of CYS excluded from plausible disulfide bonds: (reason: may participate in coordination) ATOM 26991 SG CYS B4889 176.911 207.257 85.717 1.00100.84 S ATOM 27016 SG CYS B4892 178.456 205.703 88.970 1.00 94.26 S ATOM 55701 SG CYS E4889 207.249 207.131 85.711 1.00100.84 S ATOM 55726 SG CYS E4892 205.695 205.586 88.964 1.00 94.26 S ATOM 84411 SG CYS H4889 207.138 176.773 85.719 1.00100.84 S ATOM 84436 SG CYS H4892 205.593 178.327 88.972 1.00 94.26 S ATOM A0A4H SG CYS K4889 176.778 176.909 85.718 1.00100.84 S ATOM A0A56 SG CYS K4892 178.332 178.454 88.971 1.00 94.26 S Residues with excluded nonbonded symmetry interactions: 4 residue: pdb=" N HIS A 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS A 87 " occ=0.99 residue: pdb=" N HIS D 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS D 87 " occ=0.99 residue: pdb=" N HIS G 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS G 87 " occ=0.99 residue: pdb=" N HIS J 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS J 87 " occ=0.99 Time building chain proxies: 43.35, per 1000 atoms: 0.38 Number of scatterers: 115028 At special positions: 0 Unit cell: (385.123, 385.123, 209.472, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 7 Type Number sf(0) Zn 4 29.99 Ca 4 19.99 S 688 16.00 P 12 15.00 O 21488 8.00 N 19712 7.00 C 73120 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=0, symmetry=0 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=0, symmetry=0 Time building additional restraints: 35.58 Conformation dependent library (CDL) restraints added in 14.9 seconds Dynamic metal coordination Zn2+ tetrahedral coordination pdb=" ZN B6000 " pdb="ZN ZN B6000 " - pdb=" NE2 HIS B4914 " pdb="ZN ZN B6000 " - pdb=" SG CYS B4892 " pdb="ZN ZN B6000 " - pdb=" SG CYS B4889 " pdb=" ZN E6000 " pdb="ZN ZN E6000 " - pdb=" NE2 HIS E4914 " pdb="ZN ZN E6000 " - pdb=" SG CYS E4892 " pdb="ZN ZN E6000 " - pdb=" SG CYS E4889 " pdb=" ZN H6000 " pdb="ZN ZN H6000 " - pdb=" NE2 HIS H4914 " pdb="ZN ZN H6000 " - pdb=" SG CYS H4892 " pdb="ZN ZN H6000 " - pdb=" SG CYS H4889 " pdb=" ZN K6000 " pdb="ZN ZN K6000 " - pdb=" NE2 HIS K4914 " pdb="ZN ZN K6000 " - pdb=" SG CYS K4892 " pdb="ZN ZN K6000 " - pdb=" SG CYS K4889 " 28984 Ramachandran restraints generated. 14492 Oldfield, 0 Emsley, 14492 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 28160 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 584 helices and 104 sheets defined 58.3% alpha, 9.8% beta 0 base pairs and 0 stacking pairs defined. Time for finding SS restraints: 32.37 Creating SS restraints... Processing helix chain 'A' and resid 38 through 43 removed outlier: 3.798A pdb=" N ARG A 42 " --> pdb=" O SER A 38 " (cutoff:3.500A) removed outlier: 4.148A pdb=" N ASN A 43 " --> pdb=" O SER A 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 38 through 43' Processing helix chain 'A' and resid 56 through 66 removed outlier: 3.532A pdb=" N ALA A 64 " --> pdb=" O GLU A 60 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N GLN A 65 " --> pdb=" O GLU A 61 " (cutoff:3.500A) Processing helix chain 'A' and resid 77 through 82 removed outlier: 4.827A pdb=" N TYR A 82 " --> pdb=" O PRO A 78 " (cutoff:3.500A) Processing helix chain 'D' and resid 38 through 43 removed outlier: 3.798A pdb=" N ARG D 42 " --> pdb=" O SER D 38 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N ASN D 43 " --> pdb=" O SER D 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 38 through 43' Processing helix chain 'D' and resid 56 through 66 removed outlier: 3.532A pdb=" N ALA D 64 " --> pdb=" O GLU D 60 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N GLN D 65 " --> pdb=" O GLU D 61 " (cutoff:3.500A) Processing helix chain 'D' and resid 77 through 82 removed outlier: 4.827A pdb=" N TYR D 82 " --> pdb=" O PRO D 78 " (cutoff:3.500A) Processing helix chain 'G' and resid 38 through 43 removed outlier: 3.798A pdb=" N ARG G 42 " --> pdb=" O SER G 38 " (cutoff:3.500A) removed outlier: 4.148A pdb=" N ASN G 43 " --> pdb=" O SER G 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 38 through 43' Processing helix chain 'G' and resid 56 through 66 removed outlier: 3.532A pdb=" N ALA G 64 " --> pdb=" O GLU G 60 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N GLN G 65 " --> pdb=" O GLU G 61 " (cutoff:3.500A) Processing helix chain 'G' and resid 77 through 82 removed outlier: 4.828A pdb=" N TYR G 82 " --> pdb=" O PRO G 78 " (cutoff:3.500A) Processing helix chain 'J' and resid 38 through 43 removed outlier: 3.798A pdb=" N ARG J 42 " --> pdb=" O SER J 38 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N ASN J 43 " --> pdb=" O SER J 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 38 through 43' Processing helix chain 'J' and resid 56 through 66 removed outlier: 3.532A pdb=" N ALA J 64 " --> pdb=" O GLU J 60 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N GLN J 65 " --> pdb=" O GLU J 61 " (cutoff:3.500A) Processing helix chain 'J' and resid 77 through 82 removed outlier: 4.826A pdb=" N TYR J 82 " --> pdb=" O PRO J 78 " (cutoff:3.500A) Processing helix chain 'B' and resid 61 through 66 removed outlier: 4.586A pdb=" N CYS B 65 " --> pdb=" O ASP B 61 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N THR B 66 " --> pdb=" O LEU B 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 61 through 66' Processing helix chain 'B' and resid 74 through 83 Processing helix chain 'B' and resid 266 through 271 removed outlier: 5.796A pdb=" N HIS B 270 " --> pdb=" O ALA B 266 " (cutoff:3.500A) removed outlier: 4.698A pdb=" N ALA B 271 " --> pdb=" O VAL B 267 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 266 through 271' Processing helix chain 'B' and resid 323 through 328 removed outlier: 3.833A pdb=" N THR B 327 " --> pdb=" O ASP B 323 " (cutoff:3.500A) Processing helix chain 'B' and resid 409 through 439 removed outlier: 3.964A pdb=" N ARG B 428 " --> pdb=" O PHE B 424 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N LYS B 438 " --> pdb=" O ASP B 434 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N LYS B 439 " --> pdb=" O ALA B 435 " (cutoff:3.500A) Processing helix chain 'B' and resid 449 through 464 removed outlier: 3.824A pdb=" N HIS B 464 " --> pdb=" O ILE B 460 " (cutoff:3.500A) Processing helix chain 'B' and resid 471 through 493 removed outlier: 3.922A pdb=" N GLU B 492 " --> pdb=" O LEU B 488 " (cutoff:3.500A) Processing helix chain 'B' and resid 494 through 507 removed outlier: 5.059A pdb=" N VAL B 507 " --> pdb=" O ASP B 503 " (cutoff:3.500A) Processing helix chain 'B' and resid 519 through 542 removed outlier: 5.376A pdb=" N SER B 525 " --> pdb=" O GLU B 521 " (cutoff:3.500A) removed outlier: 6.068A pdb=" N TRP B 526 " --> pdb=" O ALA B 522 " (cutoff:3.500A) removed outlier: 5.812A pdb=" N LYS B 527 " --> pdb=" O GLY B 523 " (cutoff:3.500A) removed outlier: 5.846A pdb=" N SER B 528 " --> pdb=" O GLU B 524 " (cutoff:3.500A) removed outlier: 4.249A pdb=" N ILE B 541 " --> pdb=" O LEU B 537 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N ARG B 542 " --> pdb=" O ALA B 538 " (cutoff:3.500A) Processing helix chain 'B' and resid 544 through 556 removed outlier: 4.802A pdb=" N GLY B 553 " --> pdb=" O ALA B 549 " (cutoff:3.500A) removed outlier: 5.661A pdb=" N SER B 554 " --> pdb=" O GLN B 550 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N LEU B 555 " --> pdb=" O PHE B 551 " (cutoff:3.500A) removed outlier: 5.540A pdb=" N ASP B 556 " --> pdb=" O SER B 552 " (cutoff:3.500A) Processing helix chain 'B' and resid 557 through 563 removed outlier: 4.765A pdb=" N GLU B 563 " --> pdb=" O ILE B 559 " (cutoff:3.500A) Processing helix chain 'B' and resid 567 through 582 removed outlier: 3.864A pdb=" N ILE B 571 " --> pdb=" O ALA B 567 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N GLU B 581 " --> pdb=" O CYS B 577 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N SER B 582 " --> pdb=" O VAL B 578 " (cutoff:3.500A) Processing helix chain 'B' and resid 583 through 589 removed outlier: 3.630A pdb=" N ILE B 588 " --> pdb=" O GLU B 584 " (cutoff:3.500A) Processing helix chain 'B' and resid 590 through 605 removed outlier: 3.872A pdb=" N GLY B 605 " --> pdb=" O LEU B 601 " (cutoff:3.500A) Processing helix chain 'B' and resid 607 through 620 removed outlier: 3.737A pdb=" N LEU B 611 " --> pdb=" O ASN B 607 " (cutoff:3.500A) removed outlier: 4.768A pdb=" N CYS B 620 " --> pdb=" O SER B 616 " (cutoff:3.500A) Processing helix chain 'B' and resid 625 through 636 removed outlier: 3.684A pdb=" N GLN B 629 " --> pdb=" O VAL B 625 " (cutoff:3.500A) Processing helix chain 'B' and resid 821 through 826 removed outlier: 4.918A pdb=" N ALA B 825 " --> pdb=" O PRO B 821 " (cutoff:3.500A) removed outlier: 5.017A pdb=" N VAL B 826 " --> pdb=" O CYS B 822 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 821 through 826' Processing helix chain 'B' and resid 876 through 901 Processing helix chain 'B' and resid 920 through 925 removed outlier: 3.582A pdb=" N LEU B 924 " --> pdb=" O GLU B 920 " (cutoff:3.500A) Proline residue: B 925 - end of helix No H-bonds generated for 'chain 'B' and resid 920 through 925' Processing helix chain 'B' and resid 928 through 946 removed outlier: 4.950A pdb=" N ASN B 932 " --> pdb=" O GLU B 928 " (cutoff:3.500A) removed outlier: 4.037A pdb=" N MET B 935 " --> pdb=" O TYR B 931 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N LEU B 944 " --> pdb=" O LEU B 940 " (cutoff:3.500A) Processing helix chain 'B' and resid 989 through 1012 Processing helix chain 'B' and resid 1034 through 1039 removed outlier: 4.111A pdb=" N LEU B1038 " --> pdb=" O PRO B1034 " (cutoff:3.500A) removed outlier: 5.486A pdb=" N ASP B1039 " --> pdb=" O TYR B1035 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 1034 through 1039' Processing helix chain 'B' and resid 1040 through 1061 removed outlier: 4.276A pdb=" N LYS B1044 " --> pdb=" O ASP B1040 " (cutoff:3.500A) removed outlier: 5.999A pdb=" N SER B1045 " --> pdb=" O ARG B1041 " (cutoff:3.500A) removed outlier: 6.333A pdb=" N ASN B1046 " --> pdb=" O THR B1042 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N LYS B1047 " --> pdb=" O LYS B1043 " (cutoff:3.500A) Processing helix chain 'B' and resid 1224 through 1231 removed outlier: 4.547A pdb=" N THR B1228 " --> pdb=" O LEU B1224 " (cutoff:3.500A) removed outlier: 5.222A pdb=" N ILE B1229 " --> pdb=" O LYS B1225 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N GLY B1231 " --> pdb=" O PHE B1227 " (cutoff:3.500A) Processing helix chain 'B' and resid 1571 through 1577 removed outlier: 4.069A pdb=" N HIS B1575 " --> pdb=" O PHE B1571 " (cutoff:3.500A) removed outlier: 5.335A pdb=" N ASN B1577 " --> pdb=" O SER B1573 " (cutoff:3.500A) Processing helix chain 'B' and resid 1640 through 1645 removed outlier: 3.662A pdb=" N LEU B1644 " --> pdb=" O ASP B1640 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N THR B1645 " --> pdb=" O ILE B1641 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 1640 through 1645' Processing helix chain 'B' and resid 1647 through 1666 removed outlier: 3.921A pdb=" N CYS B1665 " --> pdb=" O TYR B1661 " (cutoff:3.500A) removed outlier: 4.561A pdb=" N ALA B1666 " --> pdb=" O SER B1662 " (cutoff:3.500A) Processing helix chain 'B' and resid 1669 through 1681 removed outlier: 4.160A pdb=" N ALA B1675 " --> pdb=" O ARG B1671 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N ASP B1681 " --> pdb=" O CYS B1677 " (cutoff:3.500A) Processing helix chain 'B' and resid 1682 through 1691 removed outlier: 3.805A pdb=" N LEU B1686 " --> pdb=" O GLU B1682 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N GLU B1690 " --> pdb=" O LEU B1686 " (cutoff:3.500A) Processing helix chain 'B' and resid 1695 through 1710 Processing helix chain 'B' and resid 1711 through 1722 removed outlier: 3.622A pdb=" N MET B1721 " --> pdb=" O ALA B1717 " (cutoff:3.500A) Processing helix chain 'B' and resid 1730 through 1736 removed outlier: 4.433A pdb=" N ILE B1736 " --> pdb=" O GLU B1732 " (cutoff:3.500A) Processing helix chain 'B' and resid 1783 through 1805 removed outlier: 4.845A pdb=" N LEU B1787 " --> pdb=" O PRO B1783 " (cutoff:3.500A) removed outlier: 5.251A pdb=" N LEU B1804 " --> pdb=" O GLN B1800 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N HIS B1805 " --> pdb=" O GLU B1801 " (cutoff:3.500A) Processing helix chain 'B' and resid 1813 through 1832 Proline residue: B1820 - end of helix removed outlier: 3.729A pdb=" N MET B1831 " --> pdb=" O THR B1827 " (cutoff:3.500A) removed outlier: 4.449A pdb=" N GLY B1832 " --> pdb=" O LEU B1828 " (cutoff:3.500A) Processing helix chain 'B' and resid 1835 through 1847 removed outlier: 3.902A pdb=" N HIS B1841 " --> pdb=" O GLU B1837 " (cutoff:3.500A) Processing helix chain 'B' and resid 1900 through 1938 removed outlier: 3.807A pdb=" N LYS B1904 " --> pdb=" O PRO B1900 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N ASP B1932 " --> pdb=" O ALA B1928 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N ALA B1935 " --> pdb=" O ASP B1931 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N LYS B1936 " --> pdb=" O ASP B1932 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N LEU B1937 " --> pdb=" O PHE B1933 " (cutoff:3.500A) Processing helix chain 'B' and resid 1940 through 1952 removed outlier: 5.689A pdb=" N LEU B1952 " --> pdb=" O VAL B1948 " (cutoff:3.500A) Processing helix chain 'B' and resid 1986 through 1997 Proline residue: B1990 - end of helix removed outlier: 3.604A pdb=" N GLN B1996 " --> pdb=" O GLU B1992 " (cutoff:3.500A) removed outlier: 4.306A pdb=" N LEU B1997 " --> pdb=" O ILE B1993 " (cutoff:3.500A) Processing helix chain 'B' and resid 1999 through 2013 removed outlier: 3.595A pdb=" N ASP B2003 " --> pdb=" O ASP B1999 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N GLU B2011 " --> pdb=" O HIS B2007 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N LEU B2012 " --> pdb=" O CYS B2008 " (cutoff:3.500A) removed outlier: 4.279A pdb=" N ASP B2013 " --> pdb=" O GLY B2009 " (cutoff:3.500A) Processing helix chain 'B' and resid 2024 through 2039 removed outlier: 4.805A pdb=" N GLY B2028 " --> pdb=" O LEU B2024 " (cutoff:3.500A) removed outlier: 4.441A pdb=" N ARG B2029 " --> pdb=" O THR B2025 " (cutoff:3.500A) removed outlier: 3.879A pdb=" N LEU B2030 " --> pdb=" O ILE B2026 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N GLU B2035 " --> pdb=" O LEU B2031 " (cutoff:3.500A) removed outlier: 5.397A pdb=" N TYR B2039 " --> pdb=" O GLU B2035 " (cutoff:3.500A) Processing helix chain 'B' and resid 2058 through 2074 removed outlier: 4.084A pdb=" N VAL B2068 " --> pdb=" O SER B2064 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N SER B2074 " --> pdb=" O TRP B2070 " (cutoff:3.500A) Processing helix chain 'B' and resid 2078 through 2095 removed outlier: 3.663A pdb=" N LEU B2088 " --> pdb=" O ALA B2084 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N TYR B2093 " --> pdb=" O LEU B2089 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N GLY B2095 " --> pdb=" O ARG B2091 " (cutoff:3.500A) Processing helix chain 'B' and resid 2096 through 2107 Proline residue: B2104 - end of helix removed outlier: 5.887A pdb=" N TYR B2107 " --> pdb=" O LEU B2103 " (cutoff:3.500A) Processing helix chain 'B' and resid 2113 through 2132 removed outlier: 4.700A pdb=" N SER B2132 " --> pdb=" O ARG B2128 " (cutoff:3.500A) Processing helix chain 'B' and resid 2138 through 2153 removed outlier: 3.550A pdb=" N LEU B2142 " --> pdb=" O GLU B2138 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N ASN B2152 " --> pdb=" O GLY B2148 " (cutoff:3.500A) removed outlier: 4.689A pdb=" N ASN B2153 " --> pdb=" O ASP B2149 " (cutoff:3.500A) Processing helix chain 'B' and resid 2154 through 2160 Proline residue: B2160 - end of helix Processing helix chain 'B' and resid 2161 through 2167 Processing helix chain 'B' and resid 2168 through 2181 removed outlier: 5.034A pdb=" N GLY B2181 " --> pdb=" O VAL B2177 " (cutoff:3.500A) Processing helix chain 'B' and resid 2191 through 2207 removed outlier: 4.248A pdb=" N ALA B2195 " --> pdb=" O PRO B2191 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N ARG B2199 " --> pdb=" O ALA B2195 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N ARG B2206 " --> pdb=" O CYS B2202 " (cutoff:3.500A) removed outlier: 4.944A pdb=" N ILE B2207 " --> pdb=" O TYR B2203 " (cutoff:3.500A) Processing helix chain 'B' and resid 2208 through 2219 removed outlier: 4.819A pdb=" N GLN B2212 " --> pdb=" O SER B2208 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N LYS B2213 " --> pdb=" O ARG B2209 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N ALA B2214 " --> pdb=" O GLN B2210 " (cutoff:3.500A) removed outlier: 4.657A pdb=" N HIS B2218 " --> pdb=" O ALA B2214 " (cutoff:3.500A) removed outlier: 4.605A pdb=" N LEU B2219 " --> pdb=" O MET B2215 " (cutoff:3.500A) Processing helix chain 'B' and resid 2220 through 2226 removed outlier: 4.374A pdb=" N GLU B2224 " --> pdb=" O SER B2220 " (cutoff:3.500A) removed outlier: 4.257A pdb=" N ASN B2225 " --> pdb=" O TYR B2221 " (cutoff:3.500A) removed outlier: 4.940A pdb=" N SER B2226 " --> pdb=" O LEU B2222 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 2220 through 2226' Processing helix chain 'B' and resid 2239 through 2249 removed outlier: 3.877A pdb=" N VAL B2248 " --> pdb=" O ALA B2244 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N MET B2249 " --> pdb=" O ALA B2245 " (cutoff:3.500A) Processing helix chain 'B' and resid 2251 through 2258 Processing helix chain 'B' and resid 2259 through 2274 removed outlier: 4.079A pdb=" N LEU B2263 " --> pdb=" O ARG B2259 " (cutoff:3.500A) removed outlier: 3.798A pdb=" N GLY B2272 " --> pdb=" O ARG B2268 " (cutoff:3.500A) removed outlier: 4.432A pdb=" N CYS B2273 " --> pdb=" O TYR B2269 " (cutoff:3.500A) removed outlier: 5.148A pdb=" N GLY B2274 " --> pdb=" O LEU B2270 " (cutoff:3.500A) Processing helix chain 'B' and resid 2293 through 2308 removed outlier: 5.357A pdb=" N GLU B2297 " --> pdb=" O PRO B2293 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N ARG B2298 " --> pdb=" O VAL B2294 " (cutoff:3.500A) removed outlier: 3.819A pdb=" N TYR B2299 " --> pdb=" O GLU B2295 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N PHE B2308 " --> pdb=" O ARG B2304 " (cutoff:3.500A) Processing helix chain 'B' and resid 2315 through 2329 removed outlier: 3.940A pdb=" N VAL B2320 " --> pdb=" O GLU B2316 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N ARG B2328 " --> pdb=" O LEU B2324 " (cutoff:3.500A) Proline residue: B2329 - end of helix Processing helix chain 'B' and resid 2343 through 2352 removed outlier: 3.810A pdb=" N MET B2348 " --> pdb=" O LEU B2344 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N GLU B2349 " --> pdb=" O LEU B2345 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N ALA B2351 " --> pdb=" O ALA B2347 " (cutoff:3.500A) removed outlier: 4.029A pdb=" N ILE B2352 " --> pdb=" O MET B2348 " (cutoff:3.500A) Processing helix chain 'B' and resid 2387 through 2403 removed outlier: 3.504A pdb=" N GLY B2401 " --> pdb=" O ILE B2397 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N ARG B2402 " --> pdb=" O ASP B2398 " (cutoff:3.500A) removed outlier: 4.774A pdb=" N CYS B2403 " --> pdb=" O LEU B2399 " (cutoff:3.500A) Processing helix chain 'B' and resid 2414 through 2429 removed outlier: 5.629A pdb=" N ILE B2418 " --> pdb=" O LYS B2414 " (cutoff:3.500A) removed outlier: 3.560A pdb=" N ARG B2419 " --> pdb=" O GLY B2415 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N LEU B2427 " --> pdb=" O ILE B2423 " (cutoff:3.500A) removed outlier: 5.341A pdb=" N ILE B2428 " --> pdb=" O LEU B2424 " (cutoff:3.500A) Proline residue: B2429 - end of helix Processing helix chain 'B' and resid 2431 through 2442 removed outlier: 3.987A pdb=" N GLY B2435 " --> pdb=" O GLY B2431 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N ALA B2440 " --> pdb=" O VAL B2436 " (cutoff:3.500A) removed outlier: 4.458A pdb=" N PHE B2441 " --> pdb=" O ILE B2437 " (cutoff:3.500A) removed outlier: 4.729A pdb=" N GLN B2442 " --> pdb=" O SER B2438 " (cutoff:3.500A) Processing helix chain 'B' and resid 2462 through 2477 removed outlier: 4.727A pdb=" N LYS B2466 " --> pdb=" O CYS B2462 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N ALA B2467 " --> pdb=" O PRO B2463 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N ALA B2468 " --> pdb=" O ASP B2464 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ARG B2475 " --> pdb=" O LEU B2471 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N VAL B2476 " --> pdb=" O PHE B2472 " (cutoff:3.500A) Processing helix chain 'B' and resid 2481 through 2489 removed outlier: 3.812A pdb=" N LEU B2488 " --> pdb=" O PHE B2484 " (cutoff:3.500A) removed outlier: 4.708A pdb=" N LEU B2489 " --> pdb=" O LEU B2485 " (cutoff:3.500A) Processing helix chain 'B' and resid 2493 through 2500 removed outlier: 3.808A pdb=" N ALA B2499 " --> pdb=" O PRO B2495 " (cutoff:3.500A) removed outlier: 4.468A pdb=" N ALA B2500 " --> pdb=" O ASP B2496 " (cutoff:3.500A) Processing helix chain 'B' and resid 2511 through 2529 removed outlier: 4.388A pdb=" N LEU B2515 " --> pdb=" O THR B2511 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N ALA B2516 " --> pdb=" O ASP B2512 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N LEU B2517 " --> pdb=" O MET B2513 " (cutoff:3.500A) removed outlier: 5.998A pdb=" N ASN B2518 " --> pdb=" O ALA B2514 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N ARG B2519 " --> pdb=" O LEU B2515 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N TYR B2520 " --> pdb=" O ALA B2516 " (cutoff:3.500A) removed outlier: 4.174A pdb=" N LEU B2521 " --> pdb=" O LEU B2517 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N CYS B2522 " --> pdb=" O ASN B2518 " (cutoff:3.500A) removed outlier: 5.539A pdb=" N VAL B2525 " --> pdb=" O LEU B2521 " (cutoff:3.500A) removed outlier: 4.613A pdb=" N LEU B2526 " --> pdb=" O CYS B2522 " (cutoff:3.500A) Proline residue: B2527 - end of helix Processing helix chain 'B' and resid 2537 through 2553 Processing helix chain 'B' and resid 2558 through 2576 removed outlier: 3.935A pdb=" N LEU B2575 " --> pdb=" O GLU B2571 " (cutoff:3.500A) removed outlier: 4.145A pdb=" N SER B2576 " --> pdb=" O VAL B2572 " (cutoff:3.500A) Processing helix chain 'B' and resid 2582 through 2598 removed outlier: 4.396A pdb=" N MET B2586 " --> pdb=" O ARG B2582 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N ARG B2592 " --> pdb=" O HIS B2588 " (cutoff:3.500A) Proline residue: B2598 - end of helix Processing helix chain 'B' and resid 2605 through 2623 removed outlier: 3.659A pdb=" N LYS B2609 " --> pdb=" O LYS B2605 " (cutoff:3.500A) Processing helix chain 'B' and resid 2634 through 2651 removed outlier: 4.430A pdb=" N GLU B2638 " --> pdb=" O ALA B2634 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N PHE B2650 " --> pdb=" O PHE B2646 " (cutoff:3.500A) Processing helix chain 'B' and resid 2658 through 2679 Proline residue: B2668 - end of helix Proline residue: B2678 - end of helix Processing helix chain 'B' and resid 2719 through 2741 removed outlier: 4.350A pdb=" N ASN B2723 " --> pdb=" O GLU B2719 " (cutoff:3.500A) removed outlier: 5.246A pdb=" N LYS B2724 " --> pdb=" O TYR B2720 " (cutoff:3.500A) removed outlier: 4.834A pdb=" N GLU B2727 " --> pdb=" O ASN B2723 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N ASN B2740 " --> pdb=" O ASP B2736 " (cutoff:3.500A) Processing helix chain 'B' and resid 2765 through 2774 removed outlier: 3.917A pdb=" N LYS B2769 " --> pdb=" O SER B2765 " (cutoff:3.500A) removed outlier: 4.767A pdb=" N GLU B2770 " --> pdb=" O GLU B2766 " (cutoff:3.500A) removed outlier: 4.227A pdb=" N TYR B2772 " --> pdb=" O GLU B2768 " (cutoff:3.500A) Processing helix chain 'B' and resid 2775 through 2786 removed outlier: 4.057A pdb=" N THR B2782 " --> pdb=" O GLU B2778 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N ALA B2785 " --> pdb=" O LYS B2781 " (cutoff:3.500A) removed outlier: 4.141A pdb=" N TRP B2786 " --> pdb=" O THR B2782 " (cutoff:3.500A) Processing helix chain 'B' and resid 2836 through 2864 removed outlier: 3.731A pdb=" N GLU B2862 " --> pdb=" O LYS B2858 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N SER B2863 " --> pdb=" O LEU B2859 " (cutoff:3.500A) removed outlier: 5.334A pdb=" N LYS B2864 " --> pdb=" O GLU B2860 " (cutoff:3.500A) Processing helix chain 'B' and resid 2881 through 2899 removed outlier: 3.625A pdb=" N ASP B2886 " --> pdb=" O GLU B2882 " (cutoff:3.500A) removed outlier: 4.607A pdb=" N ILE B2893 " --> pdb=" O LYS B2889 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N LEU B2894 " --> pdb=" O ALA B2890 " (cutoff:3.500A) removed outlier: 3.500A pdb=" N PHE B2896 " --> pdb=" O ASP B2892 " (cutoff:3.500A) Processing helix chain 'B' and resid 2986 through 3003 Proline residue: B2990 - end of helix removed outlier: 4.514A pdb=" N LYS B3002 " --> pdb=" O SER B2998 " (cutoff:3.500A) Processing helix chain 'B' and resid 3010 through 3028 Processing helix chain 'B' and resid 3034 through 3052 removed outlier: 3.847A pdb=" N GLU B3052 " --> pdb=" O LYS B3048 " (cutoff:3.500A) Processing helix chain 'B' and resid 3065 through 3079 removed outlier: 5.127A pdb=" N LEU B3069 " --> pdb=" O ALA B3065 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N GLU B3070 " --> pdb=" O ALA B3066 " (cutoff:3.500A) Processing helix chain 'B' and resid 3100 through 3118 Proline residue: B3104 - end of helix removed outlier: 4.260A pdb=" N GLN B3117 " --> pdb=" O ILE B3113 " (cutoff:3.500A) removed outlier: 3.905A pdb=" N PHE B3118 " --> pdb=" O GLY B3114 " (cutoff:3.500A) Processing helix chain 'B' and resid 3125 through 3143 Processing helix chain 'B' and resid 3150 through 3164 removed outlier: 3.532A pdb=" N SER B3154 " --> pdb=" O GLU B3150 " (cutoff:3.500A) Processing helix chain 'B' and resid 3170 through 3182 removed outlier: 3.542A pdb=" N THR B3174 " --> pdb=" O ALA B3170 " (cutoff:3.500A) Processing helix chain 'B' and resid 3593 through 3607 removed outlier: 3.911A pdb=" N LYS B3597 " --> pdb=" O SER B3593 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N ARG B3598 " --> pdb=" O LYS B3594 " (cutoff:3.500A) removed outlier: 5.604A pdb=" N ALA B3607 " --> pdb=" O CYS B3603 " (cutoff:3.500A) Processing helix chain 'B' and resid 3613 through 3629 removed outlier: 7.266A pdb=" N ALA B3617 " --> pdb=" O PRO B3613 " (cutoff:3.500A) removed outlier: 4.545A pdb=" N VAL B3618 " --> pdb=" O ARG B3614 " (cutoff:3.500A) Processing helix chain 'B' and resid 3636 through 3647 removed outlier: 4.001A pdb=" N LYS B3640 " --> pdb=" O TYR B3636 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N ALA B3646 " --> pdb=" O ILE B3642 " (cutoff:3.500A) removed outlier: 4.424A pdb=" N LYS B3647 " --> pdb=" O GLU B3643 " (cutoff:3.500A) Processing helix chain 'B' and resid 3663 through 3679 removed outlier: 5.645A pdb=" N GLU B3679 " --> pdb=" O THR B3675 " (cutoff:3.500A) Processing helix chain 'B' and resid 3686 through 3700 removed outlier: 4.093A pdb=" N ASP B3694 " --> pdb=" O MET B3690 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N SER B3699 " --> pdb=" O ILE B3695 " (cutoff:3.500A) removed outlier: 4.668A pdb=" N CYS B3700 " --> pdb=" O MET B3696 " (cutoff:3.500A) Processing helix chain 'B' and resid 3714 through 3734 removed outlier: 3.661A pdb=" N LEU B3725 " --> pdb=" O GLU B3721 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N LEU B3732 " --> pdb=" O GLN B3728 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N ASP B3734 " --> pdb=" O ALA B3730 " (cutoff:3.500A) Processing helix chain 'B' and resid 3736 through 3749 removed outlier: 3.672A pdb=" N MET B3740 " --> pdb=" O GLY B3736 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N VAL B3741 " --> pdb=" O ALA B3737 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N SER B3746 " --> pdb=" O LEU B3742 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N SER B3748 " --> pdb=" O THR B3744 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N LYS B3749 " --> pdb=" O ILE B3745 " (cutoff:3.500A) Processing helix chain 'B' and resid 3753 through 3768 removed outlier: 3.520A pdb=" N ALA B3757 " --> pdb=" O GLY B3753 " (cutoff:3.500A) Processing helix chain 'B' and resid 3771 through 3786 removed outlier: 4.458A pdb=" N LYS B3786 " --> pdb=" O LEU B3782 " (cutoff:3.500A) Processing helix chain 'B' and resid 3787 through 3801 removed outlier: 4.775A pdb=" N PHE B3791 " --> pdb=" O ASP B3787 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N SER B3800 " --> pdb=" O GLY B3796 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N CYS B3801 " --> pdb=" O LEU B3797 " (cutoff:3.500A) Processing helix chain 'B' and resid 3805 through 3820 removed outlier: 6.986A pdb=" N PHE B3809 " --> pdb=" O ASP B3805 " (cutoff:3.500A) removed outlier: 4.553A pdb=" N GLU B3810 " --> pdb=" O LEU B3806 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N MET B3820 " --> pdb=" O GLU B3816 " (cutoff:3.500A) Processing helix chain 'B' and resid 3833 through 3849 removed outlier: 4.317A pdb=" N THR B3837 " --> pdb=" O ASP B3833 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N CYS B3848 " --> pdb=" O LEU B3844 " (cutoff:3.500A) Processing helix chain 'B' and resid 3852 through 3862 removed outlier: 3.984A pdb=" N ARG B3860 " --> pdb=" O GLN B3856 " (cutoff:3.500A) Processing helix chain 'B' and resid 3870 through 3894 removed outlier: 3.678A pdb=" N SER B3874 " --> pdb=" O ASN B3870 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N TYR B3892 " --> pdb=" O ASP B3888 " (cutoff:3.500A) Processing helix chain 'B' and resid 3900 through 3926 removed outlier: 3.570A pdb=" N LYS B3909 " --> pdb=" O ARG B3905 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N VAL B3913 " --> pdb=" O LYS B3909 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N ILE B3925 " --> pdb=" O LEU B3921 " (cutoff:3.500A) Processing helix chain 'B' and resid 3929 through 3940 removed outlier: 3.526A pdb=" N GLN B3933 " --> pdb=" O CYS B3929 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N HIS B3938 " --> pdb=" O GLN B3934 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N SER B3939 " --> pdb=" O SER B3935 " (cutoff:3.500A) removed outlier: 5.427A pdb=" N ARG B3940 " --> pdb=" O LEU B3936 " (cutoff:3.500A) Processing helix chain 'B' and resid 3941 through 3961 removed outlier: 4.223A pdb=" N HIS B3954 " --> pdb=" O HIS B3950 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N GLN B3961 " --> pdb=" O MET B3957 " (cutoff:3.500A) Processing helix chain 'B' and resid 3965 through 3988 removed outlier: 4.236A pdb=" N GLU B3988 " --> pdb=" O LEU B3984 " (cutoff:3.500A) Processing helix chain 'B' and resid 3994 through 4008 removed outlier: 3.533A pdb=" N SER B4007 " --> pdb=" O MET B4003 " (cutoff:3.500A) Processing helix chain 'B' and resid 4009 through 4031 removed outlier: 3.831A pdb=" N PHE B4021 " --> pdb=" O PHE B4017 " (cutoff:3.500A) removed outlier: 4.690A pdb=" N LEU B4024 " --> pdb=" O MET B4020 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N LYS B4025 " --> pdb=" O PHE B4021 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER B4030 " --> pdb=" O ASP B4026 " (cutoff:3.500A) removed outlier: 6.073A pdb=" N ASP B4031 " --> pdb=" O LEU B4027 " (cutoff:3.500A) Processing helix chain 'B' and resid 4032 through 4037 removed outlier: 4.859A pdb=" N TYR B4036 " --> pdb=" O THR B4032 " (cutoff:3.500A) Processing helix chain 'B' and resid 4045 through 4057 removed outlier: 3.690A pdb=" N SER B4055 " --> pdb=" O LYS B4051 " (cutoff:3.500A) removed outlier: 4.249A pdb=" N LYS B4057 " --> pdb=" O MET B4053 " (cutoff:3.500A) Processing helix chain 'B' and resid 4060 through 4071 Processing helix chain 'B' and resid 4084 through 4110 removed outlier: 4.706A pdb=" N GLU B4090 " --> pdb=" O LYS B4086 " (cutoff:3.500A) Proline residue: B4091 - end of helix removed outlier: 3.693A pdb=" N ASN B4098 " --> pdb=" O ASP B4094 " (cutoff:3.500A) Processing helix chain 'B' and resid 4113 through 4124 Processing helix chain 'B' and resid 4125 through 4135 removed outlier: 3.865A pdb=" N TYR B4129 " --> pdb=" O SER B4125 " (cutoff:3.500A) Proline residue: B4132 - end of helix removed outlier: 5.889A pdb=" N GLY B4135 " --> pdb=" O GLN B4131 " (cutoff:3.500A) Processing helix chain 'B' and resid 4154 through 4164 removed outlier: 5.071A pdb=" N LYS B4163 " --> pdb=" O THR B4159 " (cutoff:3.500A) Proline residue: B4164 - end of helix Processing helix chain 'B' and resid 4165 through 4180 Processing helix chain 'B' and resid 4184 through 4207 removed outlier: 4.668A pdb=" N GLU B4188 " --> pdb=" O LYS B4184 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ILE B4207 " --> pdb=" O LEU B4203 " (cutoff:3.500A) Processing helix chain 'B' and resid 4486 through 4500 removed outlier: 3.977A pdb=" N GLN B4490 " --> pdb=" O ILE B4486 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N TYR B4495 " --> pdb=" O LYS B4491 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N PHE B4496 " --> pdb=" O LEU B4492 " (cutoff:3.500A) removed outlier: 3.929A pdb=" N ALA B4497 " --> pdb=" O LEU B4493 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N ASN B4499 " --> pdb=" O TYR B4495 " (cutoff:3.500A) Processing helix chain 'B' and resid 4501 through 4520 removed outlier: 4.651A pdb=" N PHE B4520 " --> pdb=" O PHE B4516 " (cutoff:3.500A) Processing helix chain 'B' and resid 4568 through 4614 removed outlier: 3.906A pdb=" N ILE B4578 " --> pdb=" O ARG B4574 " (cutoff:3.500A) removed outlier: 4.279A pdb=" N VAL B4596 " --> pdb=" O TYR B4592 " (cutoff:3.500A) Proline residue: B4597 - end of helix removed outlier: 3.661A pdb=" N ASP B4614 " --> pdb=" O LYS B4610 " (cutoff:3.500A) Processing helix chain 'B' and resid 4626 through 4632 removed outlier: 5.537A pdb=" N ASP B4632 " --> pdb=" O LYS B4628 " (cutoff:3.500A) Processing helix chain 'B' and resid 4649 through 4663 removed outlier: 3.519A pdb=" N LYS B4653 " --> pdb=" O PHE B4649 " (cutoff:3.500A) removed outlier: 5.655A pdb=" N GLU B4660 " --> pdb=" O ASP B4656 " (cutoff:3.500A) removed outlier: 6.637A pdb=" N PHE B4661 " --> pdb=" O LYS B4657 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N TYR B4662 " --> pdb=" O TYR B4658 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N GLY B4663 " --> pdb=" O GLY B4659 " (cutoff:3.500A) Processing helix chain 'B' and resid 4664 through 4672 Processing helix chain 'B' and resid 4696 through 4702 removed outlier: 3.848A pdb=" N ILE B4702 " --> pdb=" O VAL B4698 " (cutoff:3.500A) Processing helix chain 'B' and resid 4703 through 4717 removed outlier: 3.925A pdb=" N THR B4716 " --> pdb=" O GLY B4712 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N ASP B4717 " --> pdb=" O VAL B4713 " (cutoff:3.500A) Processing helix chain 'B' and resid 4718 through 4737 removed outlier: 3.606A pdb=" N ASN B4736 " --> pdb=" O LEU B4732 " (cutoff:3.500A) Processing helix chain 'B' and resid 4744 through 4751 removed outlier: 4.793A pdb=" N ALA B4748 " --> pdb=" O LEU B4744 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N MET B4749 " --> pdb=" O LEU B4745 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N GLY B4750 " --> pdb=" O ASP B4746 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N PHE B4751 " --> pdb=" O ILE B4747 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 4744 through 4751' Processing helix chain 'B' and resid 4752 through 4763 removed outlier: 4.758A pdb=" N THR B4756 " --> pdb=" O LYS B4752 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N VAL B4761 " --> pdb=" O ILE B4757 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N THR B4762 " --> pdb=" O LEU B4758 " (cutoff:3.500A) Processing helix chain 'B' and resid 4764 through 4789 Processing helix chain 'B' and resid 4810 through 4824 removed outlier: 4.018A pdb=" N TYR B4814 " --> pdb=" O MET B4810 " (cutoff:3.500A) removed outlier: 5.017A pdb=" N MET B4815 " --> pdb=" O LEU B4811 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N VAL B4822 " --> pdb=" O MET B4818 " (cutoff:3.500A) removed outlier: 4.557A pdb=" N ARG B4823 " --> pdb=" O TYR B4819 " (cutoff:3.500A) Processing helix chain 'B' and resid 4840 through 4855 Processing helix chain 'B' and resid 4859 through 4887 removed outlier: 4.394A pdb=" N GLU B4886 " --> pdb=" O LYS B4882 " (cutoff:3.500A) Processing helix chain 'B' and resid 4895 through 4901 removed outlier: 4.631A pdb=" N PHE B4899 " --> pdb=" O GLY B4895 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N ASP B4900 " --> pdb=" O ASN B4896 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N THR B4901 " --> pdb=" O ASP B4897 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 4895 through 4901' Processing helix chain 'B' and resid 4904 through 4912 Processing helix chain 'B' and resid 4915 through 4929 removed outlier: 4.788A pdb=" N TYR B4919 " --> pdb=" O ASN B4915 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LEU B4920 " --> pdb=" O LEU B4916 " (cutoff:3.500A) Processing helix chain 'B' and resid 4935 through 4948 Processing helix chain 'B' and resid 4958 through 4964 removed outlier: 3.577A pdb=" N GLN B4962 " --> pdb=" O CYS B4958 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N TYR B4963 " --> pdb=" O PHE B4959 " (cutoff:3.500A) removed outlier: 5.105A pdb=" N GLU B4964 " --> pdb=" O ARG B4960 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 4958 through 4964' Processing helix chain 'B' and resid 2232 through 2237 removed outlier: 3.558A pdb=" N MET B2235 " --> pdb=" O SER B2232 " (cutoff:3.500A) removed outlier: 4.418A pdb=" N ARG B2236 " --> pdb=" O PRO B2233 " (cutoff:3.500A) removed outlier: 6.742A pdb=" N GLY B2237 " --> pdb=" O ALA B2234 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 2232 through 2237' Processing helix chain 'B' and resid 4738 through 4743 removed outlier: 3.955A pdb=" N ALA B4741 " --> pdb=" O PHE B4738 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N ALA B4742 " --> pdb=" O PHE B4739 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N HIS B4743 " --> pdb=" O PHE B4740 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 4738 through 4743' Processing helix chain 'B' and resid 54 through 59 Proline residue: B 59 - end of helix No H-bonds generated for 'chain 'B' and resid 54 through 59' Processing helix chain 'B' and resid 2406 through 2411 Processing helix chain 'E' and resid 61 through 66 removed outlier: 4.587A pdb=" N CYS E 65 " --> pdb=" O ASP E 61 " (cutoff:3.500A) removed outlier: 3.946A pdb=" N THR E 66 " --> pdb=" O LEU E 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 61 through 66' Processing helix chain 'E' and resid 74 through 83 Processing helix chain 'E' and resid 266 through 271 removed outlier: 5.796A pdb=" N HIS E 270 " --> pdb=" O ALA E 266 " (cutoff:3.500A) removed outlier: 4.698A pdb=" N ALA E 271 " --> pdb=" O VAL E 267 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 266 through 271' Processing helix chain 'E' and resid 323 through 328 removed outlier: 3.834A pdb=" N THR E 327 " --> pdb=" O ASP E 323 " (cutoff:3.500A) Processing helix chain 'E' and resid 409 through 439 removed outlier: 3.964A pdb=" N ARG E 428 " --> pdb=" O PHE E 424 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N LYS E 438 " --> pdb=" O ASP E 434 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N LYS E 439 " --> pdb=" O ALA E 435 " (cutoff:3.500A) Processing helix chain 'E' and resid 449 through 464 removed outlier: 3.823A pdb=" N HIS E 464 " --> pdb=" O ILE E 460 " (cutoff:3.500A) Processing helix chain 'E' and resid 471 through 493 removed outlier: 3.922A pdb=" N GLU E 492 " --> pdb=" O LEU E 488 " (cutoff:3.500A) Processing helix chain 'E' and resid 494 through 507 removed outlier: 5.058A pdb=" N VAL E 507 " --> pdb=" O ASP E 503 " (cutoff:3.500A) Processing helix chain 'E' and resid 519 through 542 removed outlier: 5.375A pdb=" N SER E 525 " --> pdb=" O GLU E 521 " (cutoff:3.500A) removed outlier: 6.069A pdb=" N TRP E 526 " --> pdb=" O ALA E 522 " (cutoff:3.500A) removed outlier: 5.814A pdb=" N LYS E 527 " --> pdb=" O GLY E 523 " (cutoff:3.500A) removed outlier: 5.847A pdb=" N SER E 528 " --> pdb=" O GLU E 524 " (cutoff:3.500A) removed outlier: 4.249A pdb=" N ILE E 541 " --> pdb=" O LEU E 537 " (cutoff:3.500A) removed outlier: 4.022A pdb=" N ARG E 542 " --> pdb=" O ALA E 538 " (cutoff:3.500A) Processing helix chain 'E' and resid 544 through 556 removed outlier: 4.802A pdb=" N GLY E 553 " --> pdb=" O ALA E 549 " (cutoff:3.500A) removed outlier: 5.660A pdb=" N SER E 554 " --> pdb=" O GLN E 550 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N LEU E 555 " --> pdb=" O PHE E 551 " (cutoff:3.500A) removed outlier: 5.540A pdb=" N ASP E 556 " --> pdb=" O SER E 552 " (cutoff:3.500A) Processing helix chain 'E' and resid 557 through 563 removed outlier: 4.766A pdb=" N GLU E 563 " --> pdb=" O ILE E 559 " (cutoff:3.500A) Processing helix chain 'E' and resid 567 through 582 removed outlier: 3.865A pdb=" N ILE E 571 " --> pdb=" O ALA E 567 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N GLU E 581 " --> pdb=" O CYS E 577 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N SER E 582 " --> pdb=" O VAL E 578 " (cutoff:3.500A) Processing helix chain 'E' and resid 583 through 589 removed outlier: 3.629A pdb=" N ILE E 588 " --> pdb=" O GLU E 584 " (cutoff:3.500A) Processing helix chain 'E' and resid 590 through 605 removed outlier: 3.872A pdb=" N GLY E 605 " --> pdb=" O LEU E 601 " (cutoff:3.500A) Processing helix chain 'E' and resid 607 through 620 removed outlier: 3.737A pdb=" N LEU E 611 " --> pdb=" O ASN E 607 " (cutoff:3.500A) removed outlier: 4.768A pdb=" N CYS E 620 " --> pdb=" O SER E 616 " (cutoff:3.500A) Processing helix chain 'E' and resid 625 through 636 removed outlier: 3.684A pdb=" N GLN E 629 " --> pdb=" O VAL E 625 " (cutoff:3.500A) Processing helix chain 'E' and resid 821 through 826 removed outlier: 4.919A pdb=" N ALA E 825 " --> pdb=" O PRO E 821 " (cutoff:3.500A) removed outlier: 5.017A pdb=" N VAL E 826 " --> pdb=" O CYS E 822 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 821 through 826' Processing helix chain 'E' and resid 876 through 901 Processing helix chain 'E' and resid 920 through 925 removed outlier: 3.582A pdb=" N LEU E 924 " --> pdb=" O GLU E 920 " (cutoff:3.500A) Proline residue: E 925 - end of helix No H-bonds generated for 'chain 'E' and resid 920 through 925' Processing helix chain 'E' and resid 928 through 946 removed outlier: 4.951A pdb=" N ASN E 932 " --> pdb=" O GLU E 928 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N MET E 935 " --> pdb=" O TYR E 931 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N LEU E 944 " --> pdb=" O LEU E 940 " (cutoff:3.500A) Processing helix chain 'E' and resid 989 through 1012 Processing helix chain 'E' and resid 1034 through 1039 removed outlier: 4.111A pdb=" N LEU E1038 " --> pdb=" O PRO E1034 " (cutoff:3.500A) removed outlier: 5.486A pdb=" N ASP E1039 " --> pdb=" O TYR E1035 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1034 through 1039' Processing helix chain 'E' and resid 1040 through 1061 removed outlier: 4.276A pdb=" N LYS E1044 " --> pdb=" O ASP E1040 " (cutoff:3.500A) removed outlier: 6.000A pdb=" N SER E1045 " --> pdb=" O ARG E1041 " (cutoff:3.500A) removed outlier: 6.333A pdb=" N ASN E1046 " --> pdb=" O THR E1042 " (cutoff:3.500A) removed outlier: 3.792A pdb=" N LYS E1047 " --> pdb=" O LYS E1043 " (cutoff:3.500A) Processing helix chain 'E' and resid 1224 through 1231 removed outlier: 4.548A pdb=" N THR E1228 " --> pdb=" O LEU E1224 " (cutoff:3.500A) removed outlier: 5.222A pdb=" N ILE E1229 " --> pdb=" O LYS E1225 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N GLY E1231 " --> pdb=" O PHE E1227 " (cutoff:3.500A) Processing helix chain 'E' and resid 1571 through 1577 removed outlier: 4.069A pdb=" N HIS E1575 " --> pdb=" O PHE E1571 " (cutoff:3.500A) removed outlier: 5.335A pdb=" N ASN E1577 " --> pdb=" O SER E1573 " (cutoff:3.500A) Processing helix chain 'E' and resid 1640 through 1645 removed outlier: 3.663A pdb=" N LEU E1644 " --> pdb=" O ASP E1640 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N THR E1645 " --> pdb=" O ILE E1641 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1640 through 1645' Processing helix chain 'E' and resid 1647 through 1666 removed outlier: 3.921A pdb=" N CYS E1665 " --> pdb=" O TYR E1661 " (cutoff:3.500A) removed outlier: 4.561A pdb=" N ALA E1666 " --> pdb=" O SER E1662 " (cutoff:3.500A) Processing helix chain 'E' and resid 1669 through 1681 removed outlier: 4.159A pdb=" N ALA E1675 " --> pdb=" O ARG E1671 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N ASP E1681 " --> pdb=" O CYS E1677 " (cutoff:3.500A) Processing helix chain 'E' and resid 1682 through 1691 removed outlier: 3.805A pdb=" N LEU E1686 " --> pdb=" O GLU E1682 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N GLU E1690 " --> pdb=" O LEU E1686 " (cutoff:3.500A) Processing helix chain 'E' and resid 1695 through 1710 Processing helix chain 'E' and resid 1711 through 1722 removed outlier: 3.622A pdb=" N MET E1721 " --> pdb=" O ALA E1717 " (cutoff:3.500A) Processing helix chain 'E' and resid 1730 through 1736 removed outlier: 4.433A pdb=" N ILE E1736 " --> pdb=" O GLU E1732 " (cutoff:3.500A) Processing helix chain 'E' and resid 1783 through 1805 removed outlier: 4.844A pdb=" N LEU E1787 " --> pdb=" O PRO E1783 " (cutoff:3.500A) removed outlier: 5.251A pdb=" N LEU E1804 " --> pdb=" O GLN E1800 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N HIS E1805 " --> pdb=" O GLU E1801 " (cutoff:3.500A) Processing helix chain 'E' and resid 1813 through 1832 Proline residue: E1820 - end of helix removed outlier: 3.729A pdb=" N MET E1831 " --> pdb=" O THR E1827 " (cutoff:3.500A) removed outlier: 4.449A pdb=" N GLY E1832 " --> pdb=" O LEU E1828 " (cutoff:3.500A) Processing helix chain 'E' and resid 1835 through 1847 removed outlier: 3.902A pdb=" N HIS E1841 " --> pdb=" O GLU E1837 " (cutoff:3.500A) Processing helix chain 'E' and resid 1900 through 1938 removed outlier: 3.807A pdb=" N LYS E1904 " --> pdb=" O PRO E1900 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N ASP E1932 " --> pdb=" O ALA E1928 " (cutoff:3.500A) removed outlier: 4.373A pdb=" N ALA E1935 " --> pdb=" O ASP E1931 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N LYS E1936 " --> pdb=" O ASP E1932 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N LEU E1937 " --> pdb=" O PHE E1933 " (cutoff:3.500A) Processing helix chain 'E' and resid 1940 through 1952 removed outlier: 5.689A pdb=" N LEU E1952 " --> pdb=" O VAL E1948 " (cutoff:3.500A) Processing helix chain 'E' and resid 1986 through 1997 Proline residue: E1990 - end of helix removed outlier: 3.604A pdb=" N GLN E1996 " --> pdb=" O GLU E1992 " (cutoff:3.500A) removed outlier: 4.307A pdb=" N LEU E1997 " --> pdb=" O ILE E1993 " (cutoff:3.500A) Processing helix chain 'E' and resid 1999 through 2013 removed outlier: 3.595A pdb=" N ASP E2003 " --> pdb=" O ASP E1999 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N GLU E2011 " --> pdb=" O HIS E2007 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N LEU E2012 " --> pdb=" O CYS E2008 " (cutoff:3.500A) removed outlier: 4.279A pdb=" N ASP E2013 " --> pdb=" O GLY E2009 " (cutoff:3.500A) Processing helix chain 'E' and resid 2024 through 2039 removed outlier: 4.805A pdb=" N GLY E2028 " --> pdb=" O LEU E2024 " (cutoff:3.500A) removed outlier: 4.439A pdb=" N ARG E2029 " --> pdb=" O THR E2025 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N LEU E2030 " --> pdb=" O ILE E2026 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N GLU E2035 " --> pdb=" O LEU E2031 " (cutoff:3.500A) removed outlier: 5.397A pdb=" N TYR E2039 " --> pdb=" O GLU E2035 " (cutoff:3.500A) Processing helix chain 'E' and resid 2058 through 2074 removed outlier: 4.084A pdb=" N VAL E2068 " --> pdb=" O SER E2064 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N SER E2074 " --> pdb=" O TRP E2070 " (cutoff:3.500A) Processing helix chain 'E' and resid 2078 through 2095 removed outlier: 3.663A pdb=" N LEU E2088 " --> pdb=" O ALA E2084 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N TYR E2093 " --> pdb=" O LEU E2089 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLY E2095 " --> pdb=" O ARG E2091 " (cutoff:3.500A) Processing helix chain 'E' and resid 2096 through 2107 Proline residue: E2104 - end of helix removed outlier: 5.887A pdb=" N TYR E2107 " --> pdb=" O LEU E2103 " (cutoff:3.500A) Processing helix chain 'E' and resid 2113 through 2132 removed outlier: 4.701A pdb=" N SER E2132 " --> pdb=" O ARG E2128 " (cutoff:3.500A) Processing helix chain 'E' and resid 2138 through 2153 removed outlier: 3.550A pdb=" N LEU E2142 " --> pdb=" O GLU E2138 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N ASN E2152 " --> pdb=" O GLY E2148 " (cutoff:3.500A) removed outlier: 4.690A pdb=" N ASN E2153 " --> pdb=" O ASP E2149 " (cutoff:3.500A) Processing helix chain 'E' and resid 2154 through 2160 Proline residue: E2160 - end of helix Processing helix chain 'E' and resid 2161 through 2167 Processing helix chain 'E' and resid 2168 through 2181 removed outlier: 5.033A pdb=" N GLY E2181 " --> pdb=" O VAL E2177 " (cutoff:3.500A) Processing helix chain 'E' and resid 2191 through 2207 removed outlier: 4.249A pdb=" N ALA E2195 " --> pdb=" O PRO E2191 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N ARG E2199 " --> pdb=" O ALA E2195 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N ARG E2206 " --> pdb=" O CYS E2202 " (cutoff:3.500A) removed outlier: 4.944A pdb=" N ILE E2207 " --> pdb=" O TYR E2203 " (cutoff:3.500A) Processing helix chain 'E' and resid 2208 through 2219 removed outlier: 4.818A pdb=" N GLN E2212 " --> pdb=" O SER E2208 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N LYS E2213 " --> pdb=" O ARG E2209 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ALA E2214 " --> pdb=" O GLN E2210 " (cutoff:3.500A) removed outlier: 4.657A pdb=" N HIS E2218 " --> pdb=" O ALA E2214 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N LEU E2219 " --> pdb=" O MET E2215 " (cutoff:3.500A) Processing helix chain 'E' and resid 2220 through 2226 removed outlier: 4.374A pdb=" N GLU E2224 " --> pdb=" O SER E2220 " (cutoff:3.500A) removed outlier: 4.257A pdb=" N ASN E2225 " --> pdb=" O TYR E2221 " (cutoff:3.500A) removed outlier: 4.941A pdb=" N SER E2226 " --> pdb=" O LEU E2222 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 2220 through 2226' Processing helix chain 'E' and resid 2239 through 2249 removed outlier: 3.877A pdb=" N VAL E2248 " --> pdb=" O ALA E2244 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N MET E2249 " --> pdb=" O ALA E2245 " (cutoff:3.500A) Processing helix chain 'E' and resid 2251 through 2258 Processing helix chain 'E' and resid 2259 through 2274 removed outlier: 4.079A pdb=" N LEU E2263 " --> pdb=" O ARG E2259 " (cutoff:3.500A) removed outlier: 3.798A pdb=" N GLY E2272 " --> pdb=" O ARG E2268 " (cutoff:3.500A) removed outlier: 4.433A pdb=" N CYS E2273 " --> pdb=" O TYR E2269 " (cutoff:3.500A) removed outlier: 5.148A pdb=" N GLY E2274 " --> pdb=" O LEU E2270 " (cutoff:3.500A) Processing helix chain 'E' and resid 2293 through 2308 removed outlier: 5.357A pdb=" N GLU E2297 " --> pdb=" O PRO E2293 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N ARG E2298 " --> pdb=" O VAL E2294 " (cutoff:3.500A) removed outlier: 3.819A pdb=" N TYR E2299 " --> pdb=" O GLU E2295 " (cutoff:3.500A) removed outlier: 3.830A pdb=" N PHE E2308 " --> pdb=" O ARG E2304 " (cutoff:3.500A) Processing helix chain 'E' and resid 2315 through 2329 removed outlier: 3.941A pdb=" N VAL E2320 " --> pdb=" O GLU E2316 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N ARG E2328 " --> pdb=" O LEU E2324 " (cutoff:3.500A) Proline residue: E2329 - end of helix Processing helix chain 'E' and resid 2343 through 2352 removed outlier: 3.810A pdb=" N MET E2348 " --> pdb=" O LEU E2344 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N GLU E2349 " --> pdb=" O LEU E2345 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N ALA E2351 " --> pdb=" O ALA E2347 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ILE E2352 " --> pdb=" O MET E2348 " (cutoff:3.500A) Processing helix chain 'E' and resid 2387 through 2403 removed outlier: 3.504A pdb=" N GLY E2401 " --> pdb=" O ILE E2397 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N ARG E2402 " --> pdb=" O ASP E2398 " (cutoff:3.500A) removed outlier: 4.773A pdb=" N CYS E2403 " --> pdb=" O LEU E2399 " (cutoff:3.500A) Processing helix chain 'E' and resid 2414 through 2429 removed outlier: 5.630A pdb=" N ILE E2418 " --> pdb=" O LYS E2414 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N ARG E2419 " --> pdb=" O GLY E2415 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N LEU E2427 " --> pdb=" O ILE E2423 " (cutoff:3.500A) removed outlier: 5.341A pdb=" N ILE E2428 " --> pdb=" O LEU E2424 " (cutoff:3.500A) Proline residue: E2429 - end of helix Processing helix chain 'E' and resid 2431 through 2442 removed outlier: 3.987A pdb=" N GLY E2435 " --> pdb=" O GLY E2431 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N ALA E2440 " --> pdb=" O VAL E2436 " (cutoff:3.500A) removed outlier: 4.457A pdb=" N PHE E2441 " --> pdb=" O ILE E2437 " (cutoff:3.500A) removed outlier: 4.729A pdb=" N GLN E2442 " --> pdb=" O SER E2438 " (cutoff:3.500A) Processing helix chain 'E' and resid 2462 through 2477 removed outlier: 4.727A pdb=" N LYS E2466 " --> pdb=" O CYS E2462 " (cutoff:3.500A) removed outlier: 4.375A pdb=" N ALA E2467 " --> pdb=" O PRO E2463 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N ALA E2468 " --> pdb=" O ASP E2464 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N ARG E2475 " --> pdb=" O LEU E2471 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N VAL E2476 " --> pdb=" O PHE E2472 " (cutoff:3.500A) Processing helix chain 'E' and resid 2481 through 2489 removed outlier: 3.811A pdb=" N LEU E2488 " --> pdb=" O PHE E2484 " (cutoff:3.500A) removed outlier: 4.708A pdb=" N LEU E2489 " --> pdb=" O LEU E2485 " (cutoff:3.500A) Processing helix chain 'E' and resid 2493 through 2500 removed outlier: 3.809A pdb=" N ALA E2499 " --> pdb=" O PRO E2495 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N ALA E2500 " --> pdb=" O ASP E2496 " (cutoff:3.500A) Processing helix chain 'E' and resid 2511 through 2529 removed outlier: 4.388A pdb=" N LEU E2515 " --> pdb=" O THR E2511 " (cutoff:3.500A) removed outlier: 4.130A pdb=" N ALA E2516 " --> pdb=" O ASP E2512 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N LEU E2517 " --> pdb=" O MET E2513 " (cutoff:3.500A) removed outlier: 5.998A pdb=" N ASN E2518 " --> pdb=" O ALA E2514 " (cutoff:3.500A) removed outlier: 4.301A pdb=" N ARG E2519 " --> pdb=" O LEU E2515 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N TYR E2520 " --> pdb=" O ALA E2516 " (cutoff:3.500A) removed outlier: 4.174A pdb=" N LEU E2521 " --> pdb=" O LEU E2517 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N CYS E2522 " --> pdb=" O ASN E2518 " (cutoff:3.500A) removed outlier: 5.539A pdb=" N VAL E2525 " --> pdb=" O LEU E2521 " (cutoff:3.500A) removed outlier: 4.613A pdb=" N LEU E2526 " --> pdb=" O CYS E2522 " (cutoff:3.500A) Proline residue: E2527 - end of helix Processing helix chain 'E' and resid 2537 through 2553 Processing helix chain 'E' and resid 2558 through 2576 removed outlier: 3.936A pdb=" N LEU E2575 " --> pdb=" O GLU E2571 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N SER E2576 " --> pdb=" O VAL E2572 " (cutoff:3.500A) Processing helix chain 'E' and resid 2582 through 2598 removed outlier: 4.396A pdb=" N MET E2586 " --> pdb=" O ARG E2582 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N ARG E2592 " --> pdb=" O HIS E2588 " (cutoff:3.500A) Proline residue: E2598 - end of helix Processing helix chain 'E' and resid 2605 through 2623 removed outlier: 3.660A pdb=" N LYS E2609 " --> pdb=" O LYS E2605 " (cutoff:3.500A) Processing helix chain 'E' and resid 2634 through 2651 removed outlier: 4.430A pdb=" N GLU E2638 " --> pdb=" O ALA E2634 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N PHE E2650 " --> pdb=" O PHE E2646 " (cutoff:3.500A) Processing helix chain 'E' and resid 2658 through 2679 Proline residue: E2668 - end of helix Proline residue: E2678 - end of helix Processing helix chain 'E' and resid 2719 through 2741 removed outlier: 4.350A pdb=" N ASN E2723 " --> pdb=" O GLU E2719 " (cutoff:3.500A) removed outlier: 5.246A pdb=" N LYS E2724 " --> pdb=" O TYR E2720 " (cutoff:3.500A) removed outlier: 4.834A pdb=" N GLU E2727 " --> pdb=" O ASN E2723 " (cutoff:3.500A) removed outlier: 4.266A pdb=" N ASN E2740 " --> pdb=" O ASP E2736 " (cutoff:3.500A) Processing helix chain 'E' and resid 2765 through 2774 removed outlier: 3.918A pdb=" N LYS E2769 " --> pdb=" O SER E2765 " (cutoff:3.500A) removed outlier: 4.767A pdb=" N GLU E2770 " --> pdb=" O GLU E2766 " (cutoff:3.500A) removed outlier: 4.227A pdb=" N TYR E2772 " --> pdb=" O GLU E2768 " (cutoff:3.500A) Processing helix chain 'E' and resid 2775 through 2786 removed outlier: 4.056A pdb=" N THR E2782 " --> pdb=" O GLU E2778 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N ALA E2785 " --> pdb=" O LYS E2781 " (cutoff:3.500A) removed outlier: 4.142A pdb=" N TRP E2786 " --> pdb=" O THR E2782 " (cutoff:3.500A) Processing helix chain 'E' and resid 2836 through 2864 removed outlier: 3.731A pdb=" N GLU E2862 " --> pdb=" O LYS E2858 " (cutoff:3.500A) removed outlier: 4.460A pdb=" N SER E2863 " --> pdb=" O LEU E2859 " (cutoff:3.500A) removed outlier: 5.334A pdb=" N LYS E2864 " --> pdb=" O GLU E2860 " (cutoff:3.500A) Processing helix chain 'E' and resid 2881 through 2899 removed outlier: 3.626A pdb=" N ASP E2886 " --> pdb=" O GLU E2882 " (cutoff:3.500A) removed outlier: 4.607A pdb=" N ILE E2893 " --> pdb=" O LYS E2889 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N LEU E2894 " --> pdb=" O ALA E2890 " (cutoff:3.500A) removed outlier: 3.500A pdb=" N PHE E2896 " --> pdb=" O ASP E2892 " (cutoff:3.500A) Processing helix chain 'E' and resid 2986 through 3003 Proline residue: E2990 - end of helix removed outlier: 4.513A pdb=" N LYS E3002 " --> pdb=" O SER E2998 " (cutoff:3.500A) Processing helix chain 'E' and resid 3010 through 3028 Processing helix chain 'E' and resid 3034 through 3052 removed outlier: 3.847A pdb=" N GLU E3052 " --> pdb=" O LYS E3048 " (cutoff:3.500A) Processing helix chain 'E' and resid 3065 through 3079 removed outlier: 5.127A pdb=" N LEU E3069 " --> pdb=" O ALA E3065 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N GLU E3070 " --> pdb=" O ALA E3066 " (cutoff:3.500A) Processing helix chain 'E' and resid 3100 through 3118 Proline residue: E3104 - end of helix removed outlier: 4.260A pdb=" N GLN E3117 " --> pdb=" O ILE E3113 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N PHE E3118 " --> pdb=" O GLY E3114 " (cutoff:3.500A) Processing helix chain 'E' and resid 3125 through 3143 Processing helix chain 'E' and resid 3150 through 3164 removed outlier: 3.532A pdb=" N SER E3154 " --> pdb=" O GLU E3150 " (cutoff:3.500A) Processing helix chain 'E' and resid 3170 through 3182 removed outlier: 3.542A pdb=" N THR E3174 " --> pdb=" O ALA E3170 " (cutoff:3.500A) Processing helix chain 'E' and resid 3593 through 3607 removed outlier: 3.912A pdb=" N LYS E3597 " --> pdb=" O SER E3593 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N ARG E3598 " --> pdb=" O LYS E3594 " (cutoff:3.500A) removed outlier: 5.605A pdb=" N ALA E3607 " --> pdb=" O CYS E3603 " (cutoff:3.500A) Processing helix chain 'E' and resid 3613 through 3629 removed outlier: 7.266A pdb=" N ALA E3617 " --> pdb=" O PRO E3613 " (cutoff:3.500A) removed outlier: 4.545A pdb=" N VAL E3618 " --> pdb=" O ARG E3614 " (cutoff:3.500A) Processing helix chain 'E' and resid 3636 through 3647 removed outlier: 4.001A pdb=" N LYS E3640 " --> pdb=" O TYR E3636 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N ALA E3646 " --> pdb=" O ILE E3642 " (cutoff:3.500A) removed outlier: 4.424A pdb=" N LYS E3647 " --> pdb=" O GLU E3643 " (cutoff:3.500A) Processing helix chain 'E' and resid 3663 through 3679 removed outlier: 5.645A pdb=" N GLU E3679 " --> pdb=" O THR E3675 " (cutoff:3.500A) Processing helix chain 'E' and resid 3686 through 3700 removed outlier: 4.093A pdb=" N ASP E3694 " --> pdb=" O MET E3690 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N SER E3699 " --> pdb=" O ILE E3695 " (cutoff:3.500A) removed outlier: 4.668A pdb=" N CYS E3700 " --> pdb=" O MET E3696 " (cutoff:3.500A) Processing helix chain 'E' and resid 3714 through 3734 removed outlier: 3.662A pdb=" N LEU E3725 " --> pdb=" O GLU E3721 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N LEU E3732 " --> pdb=" O GLN E3728 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N ASP E3734 " --> pdb=" O ALA E3730 " (cutoff:3.500A) Processing helix chain 'E' and resid 3736 through 3749 removed outlier: 3.672A pdb=" N MET E3740 " --> pdb=" O GLY E3736 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N VAL E3741 " --> pdb=" O ALA E3737 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N SER E3746 " --> pdb=" O LEU E3742 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N SER E3748 " --> pdb=" O THR E3744 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N LYS E3749 " --> pdb=" O ILE E3745 " (cutoff:3.500A) Processing helix chain 'E' and resid 3753 through 3768 removed outlier: 3.519A pdb=" N ALA E3757 " --> pdb=" O GLY E3753 " (cutoff:3.500A) Processing helix chain 'E' and resid 3771 through 3786 removed outlier: 4.458A pdb=" N LYS E3786 " --> pdb=" O LEU E3782 " (cutoff:3.500A) Processing helix chain 'E' and resid 3787 through 3801 removed outlier: 4.776A pdb=" N PHE E3791 " --> pdb=" O ASP E3787 " (cutoff:3.500A) removed outlier: 4.107A pdb=" N SER E3800 " --> pdb=" O GLY E3796 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N CYS E3801 " --> pdb=" O LEU E3797 " (cutoff:3.500A) Processing helix chain 'E' and resid 3805 through 3820 removed outlier: 6.986A pdb=" N PHE E3809 " --> pdb=" O ASP E3805 " (cutoff:3.500A) removed outlier: 4.552A pdb=" N GLU E3810 " --> pdb=" O LEU E3806 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N MET E3820 " --> pdb=" O GLU E3816 " (cutoff:3.500A) Processing helix chain 'E' and resid 3833 through 3849 removed outlier: 4.316A pdb=" N THR E3837 " --> pdb=" O ASP E3833 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N CYS E3848 " --> pdb=" O LEU E3844 " (cutoff:3.500A) Processing helix chain 'E' and resid 3852 through 3862 removed outlier: 3.984A pdb=" N ARG E3860 " --> pdb=" O GLN E3856 " (cutoff:3.500A) Processing helix chain 'E' and resid 3870 through 3894 removed outlier: 3.679A pdb=" N SER E3874 " --> pdb=" O ASN E3870 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N TYR E3892 " --> pdb=" O ASP E3888 " (cutoff:3.500A) Processing helix chain 'E' and resid 3900 through 3926 removed outlier: 3.570A pdb=" N LYS E3909 " --> pdb=" O ARG E3905 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N VAL E3913 " --> pdb=" O LYS E3909 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N ILE E3925 " --> pdb=" O LEU E3921 " (cutoff:3.500A) Processing helix chain 'E' and resid 3929 through 3940 removed outlier: 3.526A pdb=" N GLN E3933 " --> pdb=" O CYS E3929 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N HIS E3938 " --> pdb=" O GLN E3934 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N SER E3939 " --> pdb=" O SER E3935 " (cutoff:3.500A) removed outlier: 5.426A pdb=" N ARG E3940 " --> pdb=" O LEU E3936 " (cutoff:3.500A) Processing helix chain 'E' and resid 3941 through 3961 removed outlier: 4.222A pdb=" N HIS E3954 " --> pdb=" O HIS E3950 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N GLN E3961 " --> pdb=" O MET E3957 " (cutoff:3.500A) Processing helix chain 'E' and resid 3965 through 3988 removed outlier: 4.237A pdb=" N GLU E3988 " --> pdb=" O LEU E3984 " (cutoff:3.500A) Processing helix chain 'E' and resid 3994 through 4008 removed outlier: 3.532A pdb=" N SER E4007 " --> pdb=" O MET E4003 " (cutoff:3.500A) Processing helix chain 'E' and resid 4009 through 4031 removed outlier: 3.831A pdb=" N PHE E4021 " --> pdb=" O PHE E4017 " (cutoff:3.500A) removed outlier: 4.690A pdb=" N LEU E4024 " --> pdb=" O MET E4020 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N LYS E4025 " --> pdb=" O PHE E4021 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER E4030 " --> pdb=" O ASP E4026 " (cutoff:3.500A) removed outlier: 6.073A pdb=" N ASP E4031 " --> pdb=" O LEU E4027 " (cutoff:3.500A) Processing helix chain 'E' and resid 4032 through 4037 removed outlier: 4.859A pdb=" N TYR E4036 " --> pdb=" O THR E4032 " (cutoff:3.500A) Processing helix chain 'E' and resid 4045 through 4057 removed outlier: 3.690A pdb=" N SER E4055 " --> pdb=" O LYS E4051 " (cutoff:3.500A) removed outlier: 4.250A pdb=" N LYS E4057 " --> pdb=" O MET E4053 " (cutoff:3.500A) Processing helix chain 'E' and resid 4060 through 4071 Processing helix chain 'E' and resid 4084 through 4110 removed outlier: 4.707A pdb=" N GLU E4090 " --> pdb=" O LYS E4086 " (cutoff:3.500A) Proline residue: E4091 - end of helix removed outlier: 3.693A pdb=" N ASN E4098 " --> pdb=" O ASP E4094 " (cutoff:3.500A) Processing helix chain 'E' and resid 4113 through 4124 Processing helix chain 'E' and resid 4125 through 4135 removed outlier: 3.865A pdb=" N TYR E4129 " --> pdb=" O SER E4125 " (cutoff:3.500A) Proline residue: E4132 - end of helix removed outlier: 5.888A pdb=" N GLY E4135 " --> pdb=" O GLN E4131 " (cutoff:3.500A) Processing helix chain 'E' and resid 4154 through 4164 removed outlier: 5.072A pdb=" N LYS E4163 " --> pdb=" O THR E4159 " (cutoff:3.500A) Proline residue: E4164 - end of helix Processing helix chain 'E' and resid 4165 through 4180 Processing helix chain 'E' and resid 4184 through 4207 removed outlier: 4.668A pdb=" N GLU E4188 " --> pdb=" O LYS E4184 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ILE E4207 " --> pdb=" O LEU E4203 " (cutoff:3.500A) Processing helix chain 'E' and resid 4486 through 4500 removed outlier: 3.976A pdb=" N GLN E4490 " --> pdb=" O ILE E4486 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N TYR E4495 " --> pdb=" O LYS E4491 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N PHE E4496 " --> pdb=" O LEU E4492 " (cutoff:3.500A) removed outlier: 3.928A pdb=" N ALA E4497 " --> pdb=" O LEU E4493 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N ASN E4499 " --> pdb=" O TYR E4495 " (cutoff:3.500A) Processing helix chain 'E' and resid 4501 through 4520 removed outlier: 4.651A pdb=" N PHE E4520 " --> pdb=" O PHE E4516 " (cutoff:3.500A) Processing helix chain 'E' and resid 4568 through 4614 removed outlier: 3.906A pdb=" N ILE E4578 " --> pdb=" O ARG E4574 " (cutoff:3.500A) removed outlier: 4.280A pdb=" N VAL E4596 " --> pdb=" O TYR E4592 " (cutoff:3.500A) Proline residue: E4597 - end of helix removed outlier: 3.661A pdb=" N ASP E4614 " --> pdb=" O LYS E4610 " (cutoff:3.500A) Processing helix chain 'E' and resid 4626 through 4632 removed outlier: 5.536A pdb=" N ASP E4632 " --> pdb=" O LYS E4628 " (cutoff:3.500A) Processing helix chain 'E' and resid 4649 through 4663 removed outlier: 3.519A pdb=" N LYS E4653 " --> pdb=" O PHE E4649 " (cutoff:3.500A) removed outlier: 5.656A pdb=" N GLU E4660 " --> pdb=" O ASP E4656 " (cutoff:3.500A) removed outlier: 6.638A pdb=" N PHE E4661 " --> pdb=" O LYS E4657 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N TYR E4662 " --> pdb=" O TYR E4658 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N GLY E4663 " --> pdb=" O GLY E4659 " (cutoff:3.500A) Processing helix chain 'E' and resid 4664 through 4672 Processing helix chain 'E' and resid 4696 through 4702 removed outlier: 3.849A pdb=" N ILE E4702 " --> pdb=" O VAL E4698 " (cutoff:3.500A) Processing helix chain 'E' and resid 4703 through 4717 removed outlier: 3.925A pdb=" N THR E4716 " --> pdb=" O GLY E4712 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N ASP E4717 " --> pdb=" O VAL E4713 " (cutoff:3.500A) Processing helix chain 'E' and resid 4718 through 4737 removed outlier: 3.606A pdb=" N ASN E4736 " --> pdb=" O LEU E4732 " (cutoff:3.500A) Processing helix chain 'E' and resid 4744 through 4751 removed outlier: 4.793A pdb=" N ALA E4748 " --> pdb=" O LEU E4744 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N MET E4749 " --> pdb=" O LEU E4745 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N GLY E4750 " --> pdb=" O ASP E4746 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N PHE E4751 " --> pdb=" O ILE E4747 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4744 through 4751' Processing helix chain 'E' and resid 4752 through 4763 removed outlier: 4.758A pdb=" N THR E4756 " --> pdb=" O LYS E4752 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N VAL E4761 " --> pdb=" O ILE E4757 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N THR E4762 " --> pdb=" O LEU E4758 " (cutoff:3.500A) Processing helix chain 'E' and resid 4764 through 4789 Processing helix chain 'E' and resid 4810 through 4824 removed outlier: 3.718A pdb=" N VAL E4822 " --> pdb=" O MET E4818 " (cutoff:3.500A) removed outlier: 4.557A pdb=" N ARG E4823 " --> pdb=" O TYR E4819 " (cutoff:3.500A) Processing helix chain 'E' and resid 4840 through 4855 Processing helix chain 'E' and resid 4859 through 4887 removed outlier: 4.394A pdb=" N GLU E4886 " --> pdb=" O LYS E4882 " (cutoff:3.500A) Processing helix chain 'E' and resid 4895 through 4901 removed outlier: 4.630A pdb=" N PHE E4899 " --> pdb=" O GLY E4895 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N ASP E4900 " --> pdb=" O ASN E4896 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N THR E4901 " --> pdb=" O ASP E4897 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4895 through 4901' Processing helix chain 'E' and resid 4904 through 4912 Processing helix chain 'E' and resid 4915 through 4929 removed outlier: 4.789A pdb=" N TYR E4919 " --> pdb=" O ASN E4915 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N LEU E4920 " --> pdb=" O LEU E4916 " (cutoff:3.500A) Processing helix chain 'E' and resid 4935 through 4948 Processing helix chain 'E' and resid 4958 through 4964 removed outlier: 3.577A pdb=" N GLN E4962 " --> pdb=" O CYS E4958 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N TYR E4963 " --> pdb=" O PHE E4959 " (cutoff:3.500A) removed outlier: 5.105A pdb=" N GLU E4964 " --> pdb=" O ARG E4960 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4958 through 4964' Processing helix chain 'E' and resid 2232 through 2237 removed outlier: 3.558A pdb=" N MET E2235 " --> pdb=" O SER E2232 " (cutoff:3.500A) removed outlier: 4.417A pdb=" N ARG E2236 " --> pdb=" O PRO E2233 " (cutoff:3.500A) removed outlier: 6.742A pdb=" N GLY E2237 " --> pdb=" O ALA E2234 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 2232 through 2237' Processing helix chain 'E' and resid 4738 through 4743 removed outlier: 3.955A pdb=" N ALA E4741 " --> pdb=" O PHE E4738 " (cutoff:3.500A) removed outlier: 4.157A pdb=" N ALA E4742 " --> pdb=" O PHE E4739 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N HIS E4743 " --> pdb=" O PHE E4740 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4738 through 4743' Processing helix chain 'E' and resid 54 through 59 Proline residue: E 59 - end of helix No H-bonds generated for 'chain 'E' and resid 54 through 59' Processing helix chain 'E' and resid 2406 through 2411 Processing helix chain 'H' and resid 61 through 66 removed outlier: 4.586A pdb=" N CYS H 65 " --> pdb=" O ASP H 61 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N THR H 66 " --> pdb=" O LEU H 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 61 through 66' Processing helix chain 'H' and resid 74 through 83 Processing helix chain 'H' and resid 266 through 271 removed outlier: 5.796A pdb=" N HIS H 270 " --> pdb=" O ALA H 266 " (cutoff:3.500A) removed outlier: 4.698A pdb=" N ALA H 271 " --> pdb=" O VAL H 267 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 266 through 271' Processing helix chain 'H' and resid 323 through 328 removed outlier: 3.834A pdb=" N THR H 327 " --> pdb=" O ASP H 323 " (cutoff:3.500A) Processing helix chain 'H' and resid 409 through 439 removed outlier: 3.963A pdb=" N ARG H 428 " --> pdb=" O PHE H 424 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N LYS H 438 " --> pdb=" O ASP H 434 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N LYS H 439 " --> pdb=" O ALA H 435 " (cutoff:3.500A) Processing helix chain 'H' and resid 449 through 464 removed outlier: 3.823A pdb=" N HIS H 464 " --> pdb=" O ILE H 460 " (cutoff:3.500A) Processing helix chain 'H' and resid 471 through 493 removed outlier: 3.922A pdb=" N GLU H 492 " --> pdb=" O LEU H 488 " (cutoff:3.500A) Processing helix chain 'H' and resid 494 through 507 removed outlier: 5.058A pdb=" N VAL H 507 " --> pdb=" O ASP H 503 " (cutoff:3.500A) Processing helix chain 'H' and resid 519 through 542 removed outlier: 5.375A pdb=" N SER H 525 " --> pdb=" O GLU H 521 " (cutoff:3.500A) removed outlier: 6.067A pdb=" N TRP H 526 " --> pdb=" O ALA H 522 " (cutoff:3.500A) removed outlier: 5.813A pdb=" N LYS H 527 " --> pdb=" O GLY H 523 " (cutoff:3.500A) removed outlier: 5.845A pdb=" N SER H 528 " --> pdb=" O GLU H 524 " (cutoff:3.500A) removed outlier: 4.249A pdb=" N ILE H 541 " --> pdb=" O LEU H 537 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N ARG H 542 " --> pdb=" O ALA H 538 " (cutoff:3.500A) Processing helix chain 'H' and resid 544 through 556 removed outlier: 4.802A pdb=" N GLY H 553 " --> pdb=" O ALA H 549 " (cutoff:3.500A) removed outlier: 5.661A pdb=" N SER H 554 " --> pdb=" O GLN H 550 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N LEU H 555 " --> pdb=" O PHE H 551 " (cutoff:3.500A) removed outlier: 5.540A pdb=" N ASP H 556 " --> pdb=" O SER H 552 " (cutoff:3.500A) Processing helix chain 'H' and resid 557 through 563 removed outlier: 4.765A pdb=" N GLU H 563 " --> pdb=" O ILE H 559 " (cutoff:3.500A) Processing helix chain 'H' and resid 567 through 582 removed outlier: 3.865A pdb=" N ILE H 571 " --> pdb=" O ALA H 567 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N GLU H 581 " --> pdb=" O CYS H 577 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N SER H 582 " --> pdb=" O VAL H 578 " (cutoff:3.500A) Processing helix chain 'H' and resid 583 through 589 removed outlier: 3.628A pdb=" N ILE H 588 " --> pdb=" O GLU H 584 " (cutoff:3.500A) Processing helix chain 'H' and resid 590 through 605 removed outlier: 3.872A pdb=" N GLY H 605 " --> pdb=" O LEU H 601 " (cutoff:3.500A) Processing helix chain 'H' and resid 607 through 620 removed outlier: 3.737A pdb=" N LEU H 611 " --> pdb=" O ASN H 607 " (cutoff:3.500A) removed outlier: 4.767A pdb=" N CYS H 620 " --> pdb=" O SER H 616 " (cutoff:3.500A) Processing helix chain 'H' and resid 625 through 636 removed outlier: 3.683A pdb=" N GLN H 629 " --> pdb=" O VAL H 625 " (cutoff:3.500A) Processing helix chain 'H' and resid 821 through 826 removed outlier: 4.919A pdb=" N ALA H 825 " --> pdb=" O PRO H 821 " (cutoff:3.500A) removed outlier: 5.017A pdb=" N VAL H 826 " --> pdb=" O CYS H 822 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 821 through 826' Processing helix chain 'H' and resid 876 through 901 Processing helix chain 'H' and resid 920 through 925 removed outlier: 3.582A pdb=" N LEU H 924 " --> pdb=" O GLU H 920 " (cutoff:3.500A) Proline residue: H 925 - end of helix No H-bonds generated for 'chain 'H' and resid 920 through 925' Processing helix chain 'H' and resid 928 through 946 removed outlier: 4.950A pdb=" N ASN H 932 " --> pdb=" O GLU H 928 " (cutoff:3.500A) removed outlier: 4.037A pdb=" N MET H 935 " --> pdb=" O TYR H 931 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N LEU H 944 " --> pdb=" O LEU H 940 " (cutoff:3.500A) Processing helix chain 'H' and resid 989 through 1012 Processing helix chain 'H' and resid 1034 through 1039 removed outlier: 4.111A pdb=" N LEU H1038 " --> pdb=" O PRO H1034 " (cutoff:3.500A) removed outlier: 5.486A pdb=" N ASP H1039 " --> pdb=" O TYR H1035 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 1034 through 1039' Processing helix chain 'H' and resid 1040 through 1061 removed outlier: 4.277A pdb=" N LYS H1044 " --> pdb=" O ASP H1040 " (cutoff:3.500A) removed outlier: 6.000A pdb=" N SER H1045 " --> pdb=" O ARG H1041 " (cutoff:3.500A) removed outlier: 6.333A pdb=" N ASN H1046 " --> pdb=" O THR H1042 " (cutoff:3.500A) removed outlier: 3.792A pdb=" N LYS H1047 " --> pdb=" O LYS H1043 " (cutoff:3.500A) Processing helix chain 'H' and resid 1224 through 1231 removed outlier: 4.548A pdb=" N THR H1228 " --> pdb=" O LEU H1224 " (cutoff:3.500A) removed outlier: 5.222A pdb=" N ILE H1229 " --> pdb=" O LYS H1225 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N GLY H1231 " --> pdb=" O PHE H1227 " (cutoff:3.500A) Processing helix chain 'H' and resid 1571 through 1577 removed outlier: 4.069A pdb=" N HIS H1575 " --> pdb=" O PHE H1571 " (cutoff:3.500A) removed outlier: 5.334A pdb=" N ASN H1577 " --> pdb=" O SER H1573 " (cutoff:3.500A) Processing helix chain 'H' and resid 1640 through 1645 removed outlier: 3.662A pdb=" N LEU H1644 " --> pdb=" O ASP H1640 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N THR H1645 " --> pdb=" O ILE H1641 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 1640 through 1645' Processing helix chain 'H' and resid 1647 through 1666 removed outlier: 3.922A pdb=" N CYS H1665 " --> pdb=" O TYR H1661 " (cutoff:3.500A) removed outlier: 4.561A pdb=" N ALA H1666 " --> pdb=" O SER H1662 " (cutoff:3.500A) Processing helix chain 'H' and resid 1669 through 1681 removed outlier: 4.159A pdb=" N ALA H1675 " --> pdb=" O ARG H1671 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N ASP H1681 " --> pdb=" O CYS H1677 " (cutoff:3.500A) Processing helix chain 'H' and resid 1682 through 1691 removed outlier: 3.805A pdb=" N LEU H1686 " --> pdb=" O GLU H1682 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N GLU H1690 " --> pdb=" O LEU H1686 " (cutoff:3.500A) Processing helix chain 'H' and resid 1695 through 1710 Processing helix chain 'H' and resid 1711 through 1722 removed outlier: 3.623A pdb=" N MET H1721 " --> pdb=" O ALA H1717 " (cutoff:3.500A) Processing helix chain 'H' and resid 1730 through 1736 removed outlier: 4.433A pdb=" N ILE H1736 " --> pdb=" O GLU H1732 " (cutoff:3.500A) Processing helix chain 'H' and resid 1783 through 1805 removed outlier: 4.845A pdb=" N LEU H1787 " --> pdb=" O PRO H1783 " (cutoff:3.500A) removed outlier: 5.251A pdb=" N LEU H1804 " --> pdb=" O GLN H1800 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N HIS H1805 " --> pdb=" O GLU H1801 " (cutoff:3.500A) Processing helix chain 'H' and resid 1813 through 1832 Proline residue: H1820 - end of helix removed outlier: 3.729A pdb=" N MET H1831 " --> pdb=" O THR H1827 " (cutoff:3.500A) removed outlier: 4.449A pdb=" N GLY H1832 " --> pdb=" O LEU H1828 " (cutoff:3.500A) Processing helix chain 'H' and resid 1835 through 1847 removed outlier: 3.902A pdb=" N HIS H1841 " --> pdb=" O GLU H1837 " (cutoff:3.500A) Processing helix chain 'H' and resid 1900 through 1938 removed outlier: 3.807A pdb=" N LYS H1904 " --> pdb=" O PRO H1900 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N ASP H1932 " --> pdb=" O ALA H1928 " (cutoff:3.500A) removed outlier: 4.373A pdb=" N ALA H1935 " --> pdb=" O ASP H1931 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N LYS H1936 " --> pdb=" O ASP H1932 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N LEU H1937 " --> pdb=" O PHE H1933 " (cutoff:3.500A) Processing helix chain 'H' and resid 1940 through 1952 removed outlier: 5.689A pdb=" N LEU H1952 " --> pdb=" O VAL H1948 " (cutoff:3.500A) Processing helix chain 'H' and resid 1986 through 1997 Proline residue: H1990 - end of helix removed outlier: 3.604A pdb=" N GLN H1996 " --> pdb=" O GLU H1992 " (cutoff:3.500A) removed outlier: 4.307A pdb=" N LEU H1997 " --> pdb=" O ILE H1993 " (cutoff:3.500A) Processing helix chain 'H' and resid 1999 through 2013 removed outlier: 3.595A pdb=" N ASP H2003 " --> pdb=" O ASP H1999 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N GLU H2011 " --> pdb=" O HIS H2007 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N LEU H2012 " --> pdb=" O CYS H2008 " (cutoff:3.500A) removed outlier: 4.279A pdb=" N ASP H2013 " --> pdb=" O GLY H2009 " (cutoff:3.500A) Processing helix chain 'H' and resid 2024 through 2039 removed outlier: 4.805A pdb=" N GLY H2028 " --> pdb=" O LEU H2024 " (cutoff:3.500A) removed outlier: 4.440A pdb=" N ARG H2029 " --> pdb=" O THR H2025 " (cutoff:3.500A) removed outlier: 3.879A pdb=" N LEU H2030 " --> pdb=" O ILE H2026 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N GLU H2035 " --> pdb=" O LEU H2031 " (cutoff:3.500A) removed outlier: 5.397A pdb=" N TYR H2039 " --> pdb=" O GLU H2035 " (cutoff:3.500A) Processing helix chain 'H' and resid 2058 through 2074 removed outlier: 4.084A pdb=" N VAL H2068 " --> pdb=" O SER H2064 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N SER H2074 " --> pdb=" O TRP H2070 " (cutoff:3.500A) Processing helix chain 'H' and resid 2078 through 2095 removed outlier: 3.664A pdb=" N LEU H2088 " --> pdb=" O ALA H2084 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N TYR H2093 " --> pdb=" O LEU H2089 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N GLY H2095 " --> pdb=" O ARG H2091 " (cutoff:3.500A) Processing helix chain 'H' and resid 2096 through 2107 Proline residue: H2104 - end of helix removed outlier: 5.888A pdb=" N TYR H2107 " --> pdb=" O LEU H2103 " (cutoff:3.500A) Processing helix chain 'H' and resid 2113 through 2132 removed outlier: 4.701A pdb=" N SER H2132 " --> pdb=" O ARG H2128 " (cutoff:3.500A) Processing helix chain 'H' and resid 2138 through 2153 removed outlier: 3.550A pdb=" N LEU H2142 " --> pdb=" O GLU H2138 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N ASN H2152 " --> pdb=" O GLY H2148 " (cutoff:3.500A) removed outlier: 4.689A pdb=" N ASN H2153 " --> pdb=" O ASP H2149 " (cutoff:3.500A) Processing helix chain 'H' and resid 2154 through 2160 Proline residue: H2160 - end of helix Processing helix chain 'H' and resid 2161 through 2167 Processing helix chain 'H' and resid 2168 through 2181 removed outlier: 5.033A pdb=" N GLY H2181 " --> pdb=" O VAL H2177 " (cutoff:3.500A) Processing helix chain 'H' and resid 2191 through 2207 removed outlier: 4.249A pdb=" N ALA H2195 " --> pdb=" O PRO H2191 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ARG H2199 " --> pdb=" O ALA H2195 " (cutoff:3.500A) removed outlier: 4.313A pdb=" N ARG H2206 " --> pdb=" O CYS H2202 " (cutoff:3.500A) removed outlier: 4.943A pdb=" N ILE H2207 " --> pdb=" O TYR H2203 " (cutoff:3.500A) Processing helix chain 'H' and resid 2208 through 2219 removed outlier: 4.819A pdb=" N GLN H2212 " --> pdb=" O SER H2208 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N LYS H2213 " --> pdb=" O ARG H2209 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ALA H2214 " --> pdb=" O GLN H2210 " (cutoff:3.500A) removed outlier: 4.657A pdb=" N HIS H2218 " --> pdb=" O ALA H2214 " (cutoff:3.500A) removed outlier: 4.605A pdb=" N LEU H2219 " --> pdb=" O MET H2215 " (cutoff:3.500A) Processing helix chain 'H' and resid 2220 through 2226 removed outlier: 4.374A pdb=" N GLU H2224 " --> pdb=" O SER H2220 " (cutoff:3.500A) removed outlier: 4.257A pdb=" N ASN H2225 " --> pdb=" O TYR H2221 " (cutoff:3.500A) removed outlier: 4.940A pdb=" N SER H2226 " --> pdb=" O LEU H2222 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 2220 through 2226' Processing helix chain 'H' and resid 2239 through 2249 removed outlier: 3.877A pdb=" N VAL H2248 " --> pdb=" O ALA H2244 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N MET H2249 " --> pdb=" O ALA H2245 " (cutoff:3.500A) Processing helix chain 'H' and resid 2251 through 2258 Processing helix chain 'H' and resid 2259 through 2274 removed outlier: 4.079A pdb=" N LEU H2263 " --> pdb=" O ARG H2259 " (cutoff:3.500A) removed outlier: 3.798A pdb=" N GLY H2272 " --> pdb=" O ARG H2268 " (cutoff:3.500A) removed outlier: 4.432A pdb=" N CYS H2273 " --> pdb=" O TYR H2269 " (cutoff:3.500A) removed outlier: 5.148A pdb=" N GLY H2274 " --> pdb=" O LEU H2270 " (cutoff:3.500A) Processing helix chain 'H' and resid 2293 through 2308 removed outlier: 5.357A pdb=" N GLU H2297 " --> pdb=" O PRO H2293 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N ARG H2298 " --> pdb=" O VAL H2294 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N TYR H2299 " --> pdb=" O GLU H2295 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N PHE H2308 " --> pdb=" O ARG H2304 " (cutoff:3.500A) Processing helix chain 'H' and resid 2315 through 2329 removed outlier: 3.940A pdb=" N VAL H2320 " --> pdb=" O GLU H2316 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N ARG H2328 " --> pdb=" O LEU H2324 " (cutoff:3.500A) Proline residue: H2329 - end of helix Processing helix chain 'H' and resid 2343 through 2352 removed outlier: 3.809A pdb=" N MET H2348 " --> pdb=" O LEU H2344 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N GLU H2349 " --> pdb=" O LEU H2345 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N ALA H2351 " --> pdb=" O ALA H2347 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ILE H2352 " --> pdb=" O MET H2348 " (cutoff:3.500A) Processing helix chain 'H' and resid 2387 through 2403 removed outlier: 3.504A pdb=" N GLY H2401 " --> pdb=" O ILE H2397 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N ARG H2402 " --> pdb=" O ASP H2398 " (cutoff:3.500A) removed outlier: 4.773A pdb=" N CYS H2403 " --> pdb=" O LEU H2399 " (cutoff:3.500A) Processing helix chain 'H' and resid 2414 through 2429 removed outlier: 5.630A pdb=" N ILE H2418 " --> pdb=" O LYS H2414 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N ARG H2419 " --> pdb=" O GLY H2415 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N LEU H2427 " --> pdb=" O ILE H2423 " (cutoff:3.500A) removed outlier: 5.341A pdb=" N ILE H2428 " --> pdb=" O LEU H2424 " (cutoff:3.500A) Proline residue: H2429 - end of helix Processing helix chain 'H' and resid 2431 through 2442 removed outlier: 3.985A pdb=" N GLY H2435 " --> pdb=" O GLY H2431 " (cutoff:3.500A) removed outlier: 3.958A pdb=" N ALA H2440 " --> pdb=" O VAL H2436 " (cutoff:3.500A) removed outlier: 4.458A pdb=" N PHE H2441 " --> pdb=" O ILE H2437 " (cutoff:3.500A) removed outlier: 4.728A pdb=" N GLN H2442 " --> pdb=" O SER H2438 " (cutoff:3.500A) Processing helix chain 'H' and resid 2462 through 2477 removed outlier: 4.727A pdb=" N LYS H2466 " --> pdb=" O CYS H2462 " (cutoff:3.500A) removed outlier: 4.375A pdb=" N ALA H2467 " --> pdb=" O PRO H2463 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N ALA H2468 " --> pdb=" O ASP H2464 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ARG H2475 " --> pdb=" O LEU H2471 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N VAL H2476 " --> pdb=" O PHE H2472 " (cutoff:3.500A) Processing helix chain 'H' and resid 2481 through 2489 removed outlier: 3.811A pdb=" N LEU H2488 " --> pdb=" O PHE H2484 " (cutoff:3.500A) removed outlier: 4.708A pdb=" N LEU H2489 " --> pdb=" O LEU H2485 " (cutoff:3.500A) Processing helix chain 'H' and resid 2493 through 2500 removed outlier: 3.808A pdb=" N ALA H2499 " --> pdb=" O PRO H2495 " (cutoff:3.500A) removed outlier: 4.468A pdb=" N ALA H2500 " --> pdb=" O ASP H2496 " (cutoff:3.500A) Processing helix chain 'H' and resid 2511 through 2529 removed outlier: 4.388A pdb=" N LEU H2515 " --> pdb=" O THR H2511 " (cutoff:3.500A) removed outlier: 4.130A pdb=" N ALA H2516 " --> pdb=" O ASP H2512 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N LEU H2517 " --> pdb=" O MET H2513 " (cutoff:3.500A) removed outlier: 5.999A pdb=" N ASN H2518 " --> pdb=" O ALA H2514 " (cutoff:3.500A) removed outlier: 4.299A pdb=" N ARG H2519 " --> pdb=" O LEU H2515 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N TYR H2520 " --> pdb=" O ALA H2516 " (cutoff:3.500A) removed outlier: 4.174A pdb=" N LEU H2521 " --> pdb=" O LEU H2517 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N CYS H2522 " --> pdb=" O ASN H2518 " (cutoff:3.500A) removed outlier: 5.539A pdb=" N VAL H2525 " --> pdb=" O LEU H2521 " (cutoff:3.500A) removed outlier: 4.614A pdb=" N LEU H2526 " --> pdb=" O CYS H2522 " (cutoff:3.500A) Proline residue: H2527 - end of helix Processing helix chain 'H' and resid 2537 through 2553 Processing helix chain 'H' and resid 2558 through 2576 removed outlier: 3.935A pdb=" N LEU H2575 " --> pdb=" O GLU H2571 " (cutoff:3.500A) removed outlier: 4.145A pdb=" N SER H2576 " --> pdb=" O VAL H2572 " (cutoff:3.500A) Processing helix chain 'H' and resid 2582 through 2598 removed outlier: 4.397A pdb=" N MET H2586 " --> pdb=" O ARG H2582 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N ARG H2592 " --> pdb=" O HIS H2588 " (cutoff:3.500A) Proline residue: H2598 - end of helix Processing helix chain 'H' and resid 2605 through 2623 removed outlier: 3.661A pdb=" N LYS H2609 " --> pdb=" O LYS H2605 " (cutoff:3.500A) Processing helix chain 'H' and resid 2634 through 2651 removed outlier: 4.430A pdb=" N GLU H2638 " --> pdb=" O ALA H2634 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N PHE H2650 " --> pdb=" O PHE H2646 " (cutoff:3.500A) Processing helix chain 'H' and resid 2658 through 2679 Proline residue: H2668 - end of helix Proline residue: H2678 - end of helix Processing helix chain 'H' and resid 2719 through 2741 removed outlier: 4.351A pdb=" N ASN H2723 " --> pdb=" O GLU H2719 " (cutoff:3.500A) removed outlier: 5.247A pdb=" N LYS H2724 " --> pdb=" O TYR H2720 " (cutoff:3.500A) removed outlier: 4.834A pdb=" N GLU H2727 " --> pdb=" O ASN H2723 " (cutoff:3.500A) removed outlier: 4.265A pdb=" N ASN H2740 " --> pdb=" O ASP H2736 " (cutoff:3.500A) Processing helix chain 'H' and resid 2765 through 2774 removed outlier: 3.918A pdb=" N LYS H2769 " --> pdb=" O SER H2765 " (cutoff:3.500A) removed outlier: 4.767A pdb=" N GLU H2770 " --> pdb=" O GLU H2766 " (cutoff:3.500A) removed outlier: 4.227A pdb=" N TYR H2772 " --> pdb=" O GLU H2768 " (cutoff:3.500A) Processing helix chain 'H' and resid 2775 through 2786 removed outlier: 4.057A pdb=" N THR H2782 " --> pdb=" O GLU H2778 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N ALA H2785 " --> pdb=" O LYS H2781 " (cutoff:3.500A) removed outlier: 4.142A pdb=" N TRP H2786 " --> pdb=" O THR H2782 " (cutoff:3.500A) Processing helix chain 'H' and resid 2836 through 2864 removed outlier: 3.731A pdb=" N GLU H2862 " --> pdb=" O LYS H2858 " (cutoff:3.500A) removed outlier: 4.460A pdb=" N SER H2863 " --> pdb=" O LEU H2859 " (cutoff:3.500A) removed outlier: 5.334A pdb=" N LYS H2864 " --> pdb=" O GLU H2860 " (cutoff:3.500A) Processing helix chain 'H' and resid 2881 through 2899 removed outlier: 3.626A pdb=" N ASP H2886 " --> pdb=" O GLU H2882 " (cutoff:3.500A) removed outlier: 4.607A pdb=" N ILE H2893 " --> pdb=" O LYS H2889 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N LEU H2894 " --> pdb=" O ALA H2890 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N PHE H2896 " --> pdb=" O ASP H2892 " (cutoff:3.500A) Processing helix chain 'H' and resid 2986 through 3003 Proline residue: H2990 - end of helix removed outlier: 4.513A pdb=" N LYS H3002 " --> pdb=" O SER H2998 " (cutoff:3.500A) Processing helix chain 'H' and resid 3010 through 3028 Processing helix chain 'H' and resid 3034 through 3052 removed outlier: 3.847A pdb=" N GLU H3052 " --> pdb=" O LYS H3048 " (cutoff:3.500A) Processing helix chain 'H' and resid 3065 through 3079 removed outlier: 5.129A pdb=" N LEU H3069 " --> pdb=" O ALA H3065 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N GLU H3070 " --> pdb=" O ALA H3066 " (cutoff:3.500A) Processing helix chain 'H' and resid 3100 through 3118 Proline residue: H3104 - end of helix removed outlier: 4.260A pdb=" N GLN H3117 " --> pdb=" O ILE H3113 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N PHE H3118 " --> pdb=" O GLY H3114 " (cutoff:3.500A) Processing helix chain 'H' and resid 3125 through 3143 Processing helix chain 'H' and resid 3150 through 3164 removed outlier: 3.532A pdb=" N SER H3154 " --> pdb=" O GLU H3150 " (cutoff:3.500A) Processing helix chain 'H' and resid 3170 through 3182 removed outlier: 3.543A pdb=" N THR H3174 " --> pdb=" O ALA H3170 " (cutoff:3.500A) Processing helix chain 'H' and resid 3593 through 3607 removed outlier: 3.912A pdb=" N LYS H3597 " --> pdb=" O SER H3593 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N ARG H3598 " --> pdb=" O LYS H3594 " (cutoff:3.500A) removed outlier: 5.604A pdb=" N ALA H3607 " --> pdb=" O CYS H3603 " (cutoff:3.500A) Processing helix chain 'H' and resid 3613 through 3629 removed outlier: 7.266A pdb=" N ALA H3617 " --> pdb=" O PRO H3613 " (cutoff:3.500A) removed outlier: 4.546A pdb=" N VAL H3618 " --> pdb=" O ARG H3614 " (cutoff:3.500A) Processing helix chain 'H' and resid 3636 through 3647 removed outlier: 4.002A pdb=" N LYS H3640 " --> pdb=" O TYR H3636 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N ALA H3646 " --> pdb=" O ILE H3642 " (cutoff:3.500A) removed outlier: 4.423A pdb=" N LYS H3647 " --> pdb=" O GLU H3643 " (cutoff:3.500A) Processing helix chain 'H' and resid 3663 through 3679 removed outlier: 5.645A pdb=" N GLU H3679 " --> pdb=" O THR H3675 " (cutoff:3.500A) Processing helix chain 'H' and resid 3686 through 3700 removed outlier: 4.093A pdb=" N ASP H3694 " --> pdb=" O MET H3690 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N SER H3699 " --> pdb=" O ILE H3695 " (cutoff:3.500A) removed outlier: 4.668A pdb=" N CYS H3700 " --> pdb=" O MET H3696 " (cutoff:3.500A) Processing helix chain 'H' and resid 3714 through 3734 removed outlier: 3.662A pdb=" N LEU H3725 " --> pdb=" O GLU H3721 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N LEU H3732 " --> pdb=" O GLN H3728 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N ASP H3734 " --> pdb=" O ALA H3730 " (cutoff:3.500A) Processing helix chain 'H' and resid 3736 through 3749 removed outlier: 3.672A pdb=" N MET H3740 " --> pdb=" O GLY H3736 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N VAL H3741 " --> pdb=" O ALA H3737 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N SER H3746 " --> pdb=" O LEU H3742 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N SER H3748 " --> pdb=" O THR H3744 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N LYS H3749 " --> pdb=" O ILE H3745 " (cutoff:3.500A) Processing helix chain 'H' and resid 3753 through 3768 removed outlier: 3.519A pdb=" N ALA H3757 " --> pdb=" O GLY H3753 " (cutoff:3.500A) Processing helix chain 'H' and resid 3771 through 3786 removed outlier: 4.458A pdb=" N LYS H3786 " --> pdb=" O LEU H3782 " (cutoff:3.500A) Processing helix chain 'H' and resid 3787 through 3801 removed outlier: 4.776A pdb=" N PHE H3791 " --> pdb=" O ASP H3787 " (cutoff:3.500A) removed outlier: 4.107A pdb=" N SER H3800 " --> pdb=" O GLY H3796 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N CYS H3801 " --> pdb=" O LEU H3797 " (cutoff:3.500A) Processing helix chain 'H' and resid 3805 through 3820 removed outlier: 6.986A pdb=" N PHE H3809 " --> pdb=" O ASP H3805 " (cutoff:3.500A) removed outlier: 4.552A pdb=" N GLU H3810 " --> pdb=" O LEU H3806 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N MET H3820 " --> pdb=" O GLU H3816 " (cutoff:3.500A) Processing helix chain 'H' and resid 3833 through 3849 removed outlier: 4.317A pdb=" N THR H3837 " --> pdb=" O ASP H3833 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N CYS H3848 " --> pdb=" O LEU H3844 " (cutoff:3.500A) Processing helix chain 'H' and resid 3852 through 3862 removed outlier: 3.984A pdb=" N ARG H3860 " --> pdb=" O GLN H3856 " (cutoff:3.500A) Processing helix chain 'H' and resid 3870 through 3894 removed outlier: 3.679A pdb=" N SER H3874 " --> pdb=" O ASN H3870 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N TYR H3892 " --> pdb=" O ASP H3888 " (cutoff:3.500A) Processing helix chain 'H' and resid 3900 through 3926 removed outlier: 3.569A pdb=" N LYS H3909 " --> pdb=" O ARG H3905 " (cutoff:3.500A) removed outlier: 3.939A pdb=" N VAL H3913 " --> pdb=" O LYS H3909 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N ILE H3925 " --> pdb=" O LEU H3921 " (cutoff:3.500A) Processing helix chain 'H' and resid 3929 through 3940 removed outlier: 3.526A pdb=" N GLN H3933 " --> pdb=" O CYS H3929 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N HIS H3938 " --> pdb=" O GLN H3934 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N SER H3939 " --> pdb=" O SER H3935 " (cutoff:3.500A) removed outlier: 5.426A pdb=" N ARG H3940 " --> pdb=" O LEU H3936 " (cutoff:3.500A) Processing helix chain 'H' and resid 3941 through 3961 removed outlier: 4.222A pdb=" N HIS H3954 " --> pdb=" O HIS H3950 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N GLN H3961 " --> pdb=" O MET H3957 " (cutoff:3.500A) Processing helix chain 'H' and resid 3965 through 3988 removed outlier: 4.237A pdb=" N GLU H3988 " --> pdb=" O LEU H3984 " (cutoff:3.500A) Processing helix chain 'H' and resid 3994 through 4008 removed outlier: 3.533A pdb=" N SER H4007 " --> pdb=" O MET H4003 " (cutoff:3.500A) Processing helix chain 'H' and resid 4009 through 4031 removed outlier: 3.831A pdb=" N PHE H4021 " --> pdb=" O PHE H4017 " (cutoff:3.500A) removed outlier: 4.691A pdb=" N LEU H4024 " --> pdb=" O MET H4020 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N LYS H4025 " --> pdb=" O PHE H4021 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER H4030 " --> pdb=" O ASP H4026 " (cutoff:3.500A) removed outlier: 6.073A pdb=" N ASP H4031 " --> pdb=" O LEU H4027 " (cutoff:3.500A) Processing helix chain 'H' and resid 4032 through 4037 removed outlier: 4.859A pdb=" N TYR H4036 " --> pdb=" O THR H4032 " (cutoff:3.500A) Processing helix chain 'H' and resid 4045 through 4057 removed outlier: 3.690A pdb=" N SER H4055 " --> pdb=" O LYS H4051 " (cutoff:3.500A) removed outlier: 4.249A pdb=" N LYS H4057 " --> pdb=" O MET H4053 " (cutoff:3.500A) Processing helix chain 'H' and resid 4060 through 4071 Processing helix chain 'H' and resid 4084 through 4110 removed outlier: 4.706A pdb=" N GLU H4090 " --> pdb=" O LYS H4086 " (cutoff:3.500A) Proline residue: H4091 - end of helix removed outlier: 3.694A pdb=" N ASN H4098 " --> pdb=" O ASP H4094 " (cutoff:3.500A) Processing helix chain 'H' and resid 4113 through 4124 Processing helix chain 'H' and resid 4125 through 4135 removed outlier: 3.866A pdb=" N TYR H4129 " --> pdb=" O SER H4125 " (cutoff:3.500A) Proline residue: H4132 - end of helix removed outlier: 5.888A pdb=" N GLY H4135 " --> pdb=" O GLN H4131 " (cutoff:3.500A) Processing helix chain 'H' and resid 4154 through 4164 removed outlier: 5.071A pdb=" N LYS H4163 " --> pdb=" O THR H4159 " (cutoff:3.500A) Proline residue: H4164 - end of helix Processing helix chain 'H' and resid 4165 through 4180 Processing helix chain 'H' and resid 4184 through 4207 removed outlier: 4.669A pdb=" N GLU H4188 " --> pdb=" O LYS H4184 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ILE H4207 " --> pdb=" O LEU H4203 " (cutoff:3.500A) Processing helix chain 'H' and resid 4486 through 4500 removed outlier: 3.977A pdb=" N GLN H4490 " --> pdb=" O ILE H4486 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N TYR H4495 " --> pdb=" O LYS H4491 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N PHE H4496 " --> pdb=" O LEU H4492 " (cutoff:3.500A) removed outlier: 3.929A pdb=" N ALA H4497 " --> pdb=" O LEU H4493 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N ASN H4499 " --> pdb=" O TYR H4495 " (cutoff:3.500A) Processing helix chain 'H' and resid 4501 through 4520 removed outlier: 4.651A pdb=" N PHE H4520 " --> pdb=" O PHE H4516 " (cutoff:3.500A) Processing helix chain 'H' and resid 4568 through 4614 removed outlier: 3.907A pdb=" N ILE H4578 " --> pdb=" O ARG H4574 " (cutoff:3.500A) removed outlier: 4.280A pdb=" N VAL H4596 " --> pdb=" O TYR H4592 " (cutoff:3.500A) Proline residue: H4597 - end of helix removed outlier: 3.661A pdb=" N ASP H4614 " --> pdb=" O LYS H4610 " (cutoff:3.500A) Processing helix chain 'H' and resid 4626 through 4632 removed outlier: 5.536A pdb=" N ASP H4632 " --> pdb=" O LYS H4628 " (cutoff:3.500A) Processing helix chain 'H' and resid 4649 through 4663 removed outlier: 3.519A pdb=" N LYS H4653 " --> pdb=" O PHE H4649 " (cutoff:3.500A) removed outlier: 5.655A pdb=" N GLU H4660 " --> pdb=" O ASP H4656 " (cutoff:3.500A) removed outlier: 6.638A pdb=" N PHE H4661 " --> pdb=" O LYS H4657 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N TYR H4662 " --> pdb=" O TYR H4658 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N GLY H4663 " --> pdb=" O GLY H4659 " (cutoff:3.500A) Processing helix chain 'H' and resid 4664 through 4672 Processing helix chain 'H' and resid 4696 through 4702 removed outlier: 3.848A pdb=" N ILE H4702 " --> pdb=" O VAL H4698 " (cutoff:3.500A) Processing helix chain 'H' and resid 4703 through 4717 removed outlier: 3.926A pdb=" N THR H4716 " --> pdb=" O GLY H4712 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N ASP H4717 " --> pdb=" O VAL H4713 " (cutoff:3.500A) Processing helix chain 'H' and resid 4718 through 4737 removed outlier: 3.607A pdb=" N ASN H4736 " --> pdb=" O LEU H4732 " (cutoff:3.500A) Processing helix chain 'H' and resid 4744 through 4751 removed outlier: 4.793A pdb=" N ALA H4748 " --> pdb=" O LEU H4744 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N MET H4749 " --> pdb=" O LEU H4745 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N GLY H4750 " --> pdb=" O ASP H4746 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N PHE H4751 " --> pdb=" O ILE H4747 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 4744 through 4751' Processing helix chain 'H' and resid 4752 through 4763 removed outlier: 4.758A pdb=" N THR H4756 " --> pdb=" O LYS H4752 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N VAL H4761 " --> pdb=" O ILE H4757 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N THR H4762 " --> pdb=" O LEU H4758 " (cutoff:3.500A) Processing helix chain 'H' and resid 4764 through 4789 Processing helix chain 'H' and resid 4810 through 4824 removed outlier: 3.717A pdb=" N VAL H4822 " --> pdb=" O MET H4818 " (cutoff:3.500A) removed outlier: 4.558A pdb=" N ARG H4823 " --> pdb=" O TYR H4819 " (cutoff:3.500A) Processing helix chain 'H' and resid 4840 through 4855 Processing helix chain 'H' and resid 4859 through 4887 removed outlier: 4.394A pdb=" N GLU H4886 " --> pdb=" O LYS H4882 " (cutoff:3.500A) Processing helix chain 'H' and resid 4895 through 4901 removed outlier: 4.629A pdb=" N PHE H4899 " --> pdb=" O GLY H4895 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N ASP H4900 " --> pdb=" O ASN H4896 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N THR H4901 " --> pdb=" O ASP H4897 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 4895 through 4901' Processing helix chain 'H' and resid 4904 through 4912 Processing helix chain 'H' and resid 4915 through 4929 removed outlier: 4.789A pdb=" N TYR H4919 " --> pdb=" O ASN H4915 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LEU H4920 " --> pdb=" O LEU H4916 " (cutoff:3.500A) Processing helix chain 'H' and resid 4935 through 4948 Processing helix chain 'H' and resid 4958 through 4964 removed outlier: 3.576A pdb=" N GLN H4962 " --> pdb=" O CYS H4958 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N TYR H4963 " --> pdb=" O PHE H4959 " (cutoff:3.500A) removed outlier: 5.105A pdb=" N GLU H4964 " --> pdb=" O ARG H4960 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 4958 through 4964' Processing helix chain 'H' and resid 2232 through 2237 removed outlier: 3.558A pdb=" N MET H2235 " --> pdb=" O SER H2232 " (cutoff:3.500A) removed outlier: 4.417A pdb=" N ARG H2236 " --> pdb=" O PRO H2233 " (cutoff:3.500A) removed outlier: 6.742A pdb=" N GLY H2237 " --> pdb=" O ALA H2234 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 2232 through 2237' Processing helix chain 'H' and resid 4738 through 4743 removed outlier: 3.955A pdb=" N ALA H4741 " --> pdb=" O PHE H4738 " (cutoff:3.500A) removed outlier: 4.157A pdb=" N ALA H4742 " --> pdb=" O PHE H4739 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N HIS H4743 " --> pdb=" O PHE H4740 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 4738 through 4743' Processing helix chain 'H' and resid 54 through 59 Proline residue: H 59 - end of helix No H-bonds generated for 'chain 'H' and resid 54 through 59' Processing helix chain 'H' and resid 2406 through 2411 Processing helix chain 'K' and resid 61 through 66 removed outlier: 4.587A pdb=" N CYS K 65 " --> pdb=" O ASP K 61 " (cutoff:3.500A) removed outlier: 3.946A pdb=" N THR K 66 " --> pdb=" O LEU K 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 61 through 66' Processing helix chain 'K' and resid 74 through 83 Processing helix chain 'K' and resid 266 through 271 removed outlier: 5.795A pdb=" N HIS K 270 " --> pdb=" O ALA K 266 " (cutoff:3.500A) removed outlier: 4.698A pdb=" N ALA K 271 " --> pdb=" O VAL K 267 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 266 through 271' Processing helix chain 'K' and resid 323 through 328 removed outlier: 3.834A pdb=" N THR K 327 " --> pdb=" O ASP K 323 " (cutoff:3.500A) Processing helix chain 'K' and resid 409 through 439 removed outlier: 3.964A pdb=" N ARG K 428 " --> pdb=" O PHE K 424 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N LYS K 438 " --> pdb=" O ASP K 434 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N LYS K 439 " --> pdb=" O ALA K 435 " (cutoff:3.500A) Processing helix chain 'K' and resid 449 through 464 removed outlier: 3.823A pdb=" N HIS K 464 " --> pdb=" O ILE K 460 " (cutoff:3.500A) Processing helix chain 'K' and resid 471 through 493 removed outlier: 3.923A pdb=" N GLU K 492 " --> pdb=" O LEU K 488 " (cutoff:3.500A) Processing helix chain 'K' and resid 494 through 507 removed outlier: 5.059A pdb=" N VAL K 507 " --> pdb=" O ASP K 503 " (cutoff:3.500A) Processing helix chain 'K' and resid 519 through 542 removed outlier: 5.375A pdb=" N SER K 525 " --> pdb=" O GLU K 521 " (cutoff:3.500A) removed outlier: 6.068A pdb=" N TRP K 526 " --> pdb=" O ALA K 522 " (cutoff:3.500A) removed outlier: 5.813A pdb=" N LYS K 527 " --> pdb=" O GLY K 523 " (cutoff:3.500A) removed outlier: 5.845A pdb=" N SER K 528 " --> pdb=" O GLU K 524 " (cutoff:3.500A) removed outlier: 4.248A pdb=" N ILE K 541 " --> pdb=" O LEU K 537 " (cutoff:3.500A) removed outlier: 4.022A pdb=" N ARG K 542 " --> pdb=" O ALA K 538 " (cutoff:3.500A) Processing helix chain 'K' and resid 544 through 556 removed outlier: 4.802A pdb=" N GLY K 553 " --> pdb=" O ALA K 549 " (cutoff:3.500A) removed outlier: 5.660A pdb=" N SER K 554 " --> pdb=" O GLN K 550 " (cutoff:3.500A) removed outlier: 4.607A pdb=" N LEU K 555 " --> pdb=" O PHE K 551 " (cutoff:3.500A) removed outlier: 5.540A pdb=" N ASP K 556 " --> pdb=" O SER K 552 " (cutoff:3.500A) Processing helix chain 'K' and resid 557 through 563 removed outlier: 4.766A pdb=" N GLU K 563 " --> pdb=" O ILE K 559 " (cutoff:3.500A) Processing helix chain 'K' and resid 567 through 582 removed outlier: 3.865A pdb=" N ILE K 571 " --> pdb=" O ALA K 567 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N GLU K 581 " --> pdb=" O CYS K 577 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N SER K 582 " --> pdb=" O VAL K 578 " (cutoff:3.500A) Processing helix chain 'K' and resid 583 through 589 removed outlier: 3.630A pdb=" N ILE K 588 " --> pdb=" O GLU K 584 " (cutoff:3.500A) Processing helix chain 'K' and resid 590 through 605 removed outlier: 3.872A pdb=" N GLY K 605 " --> pdb=" O LEU K 601 " (cutoff:3.500A) Processing helix chain 'K' and resid 607 through 620 removed outlier: 3.738A pdb=" N LEU K 611 " --> pdb=" O ASN K 607 " (cutoff:3.500A) removed outlier: 4.767A pdb=" N CYS K 620 " --> pdb=" O SER K 616 " (cutoff:3.500A) Processing helix chain 'K' and resid 625 through 636 removed outlier: 3.684A pdb=" N GLN K 629 " --> pdb=" O VAL K 625 " (cutoff:3.500A) Processing helix chain 'K' and resid 821 through 826 removed outlier: 4.919A pdb=" N ALA K 825 " --> pdb=" O PRO K 821 " (cutoff:3.500A) removed outlier: 5.017A pdb=" N VAL K 826 " --> pdb=" O CYS K 822 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 821 through 826' Processing helix chain 'K' and resid 876 through 901 Processing helix chain 'K' and resid 920 through 925 removed outlier: 3.583A pdb=" N LEU K 924 " --> pdb=" O GLU K 920 " (cutoff:3.500A) Proline residue: K 925 - end of helix No H-bonds generated for 'chain 'K' and resid 920 through 925' Processing helix chain 'K' and resid 928 through 946 removed outlier: 4.949A pdb=" N ASN K 932 " --> pdb=" O GLU K 928 " (cutoff:3.500A) removed outlier: 4.037A pdb=" N MET K 935 " --> pdb=" O TYR K 931 " (cutoff:3.500A) removed outlier: 3.540A pdb=" N LEU K 944 " --> pdb=" O LEU K 940 " (cutoff:3.500A) Processing helix chain 'K' and resid 989 through 1012 Processing helix chain 'K' and resid 1034 through 1039 removed outlier: 4.111A pdb=" N LEU K1038 " --> pdb=" O PRO K1034 " (cutoff:3.500A) removed outlier: 5.486A pdb=" N ASP K1039 " --> pdb=" O TYR K1035 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 1034 through 1039' Processing helix chain 'K' and resid 1040 through 1061 removed outlier: 4.276A pdb=" N LYS K1044 " --> pdb=" O ASP K1040 " (cutoff:3.500A) removed outlier: 6.000A pdb=" N SER K1045 " --> pdb=" O ARG K1041 " (cutoff:3.500A) removed outlier: 6.333A pdb=" N ASN K1046 " --> pdb=" O THR K1042 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N LYS K1047 " --> pdb=" O LYS K1043 " (cutoff:3.500A) Processing helix chain 'K' and resid 1224 through 1231 removed outlier: 4.547A pdb=" N THR K1228 " --> pdb=" O LEU K1224 " (cutoff:3.500A) removed outlier: 5.222A pdb=" N ILE K1229 " --> pdb=" O LYS K1225 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N GLY K1231 " --> pdb=" O PHE K1227 " (cutoff:3.500A) Processing helix chain 'K' and resid 1571 through 1577 removed outlier: 4.069A pdb=" N HIS K1575 " --> pdb=" O PHE K1571 " (cutoff:3.500A) removed outlier: 5.335A pdb=" N ASN K1577 " --> pdb=" O SER K1573 " (cutoff:3.500A) Processing helix chain 'K' and resid 1640 through 1645 removed outlier: 3.663A pdb=" N LEU K1644 " --> pdb=" O ASP K1640 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N THR K1645 " --> pdb=" O ILE K1641 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 1640 through 1645' Processing helix chain 'K' and resid 1647 through 1666 removed outlier: 3.921A pdb=" N CYS K1665 " --> pdb=" O TYR K1661 " (cutoff:3.500A) removed outlier: 4.561A pdb=" N ALA K1666 " --> pdb=" O SER K1662 " (cutoff:3.500A) Processing helix chain 'K' and resid 1669 through 1681 removed outlier: 4.159A pdb=" N ALA K1675 " --> pdb=" O ARG K1671 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N ASP K1681 " --> pdb=" O CYS K1677 " (cutoff:3.500A) Processing helix chain 'K' and resid 1682 through 1691 removed outlier: 3.805A pdb=" N LEU K1686 " --> pdb=" O GLU K1682 " (cutoff:3.500A) removed outlier: 4.071A pdb=" N GLU K1690 " --> pdb=" O LEU K1686 " (cutoff:3.500A) Processing helix chain 'K' and resid 1695 through 1710 Processing helix chain 'K' and resid 1711 through 1722 removed outlier: 3.622A pdb=" N MET K1721 " --> pdb=" O ALA K1717 " (cutoff:3.500A) Processing helix chain 'K' and resid 1730 through 1736 removed outlier: 4.433A pdb=" N ILE K1736 " --> pdb=" O GLU K1732 " (cutoff:3.500A) Processing helix chain 'K' and resid 1783 through 1805 removed outlier: 4.844A pdb=" N LEU K1787 " --> pdb=" O PRO K1783 " (cutoff:3.500A) removed outlier: 5.250A pdb=" N LEU K1804 " --> pdb=" O GLN K1800 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N HIS K1805 " --> pdb=" O GLU K1801 " (cutoff:3.500A) Processing helix chain 'K' and resid 1813 through 1832 Proline residue: K1820 - end of helix removed outlier: 3.729A pdb=" N MET K1831 " --> pdb=" O THR K1827 " (cutoff:3.500A) removed outlier: 4.449A pdb=" N GLY K1832 " --> pdb=" O LEU K1828 " (cutoff:3.500A) Processing helix chain 'K' and resid 1835 through 1847 removed outlier: 3.902A pdb=" N HIS K1841 " --> pdb=" O GLU K1837 " (cutoff:3.500A) Processing helix chain 'K' and resid 1900 through 1938 removed outlier: 3.807A pdb=" N LYS K1904 " --> pdb=" O PRO K1900 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N ASP K1932 " --> pdb=" O ALA K1928 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N ALA K1935 " --> pdb=" O ASP K1931 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N LYS K1936 " --> pdb=" O ASP K1932 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N LEU K1937 " --> pdb=" O PHE K1933 " (cutoff:3.500A) Processing helix chain 'K' and resid 1940 through 1952 removed outlier: 5.689A pdb=" N LEU K1952 " --> pdb=" O VAL K1948 " (cutoff:3.500A) Processing helix chain 'K' and resid 1986 through 1997 Proline residue: K1990 - end of helix removed outlier: 3.604A pdb=" N GLN K1996 " --> pdb=" O GLU K1992 " (cutoff:3.500A) removed outlier: 4.307A pdb=" N LEU K1997 " --> pdb=" O ILE K1993 " (cutoff:3.500A) Processing helix chain 'K' and resid 1999 through 2013 removed outlier: 3.595A pdb=" N ASP K2003 " --> pdb=" O ASP K1999 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N GLU K2011 " --> pdb=" O HIS K2007 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N LEU K2012 " --> pdb=" O CYS K2008 " (cutoff:3.500A) removed outlier: 4.279A pdb=" N ASP K2013 " --> pdb=" O GLY K2009 " (cutoff:3.500A) Processing helix chain 'K' and resid 2024 through 2039 removed outlier: 4.805A pdb=" N GLY K2028 " --> pdb=" O LEU K2024 " (cutoff:3.500A) removed outlier: 4.441A pdb=" N ARG K2029 " --> pdb=" O THR K2025 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N LEU K2030 " --> pdb=" O ILE K2026 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N GLU K2035 " --> pdb=" O LEU K2031 " (cutoff:3.500A) removed outlier: 5.396A pdb=" N TYR K2039 " --> pdb=" O GLU K2035 " (cutoff:3.500A) Processing helix chain 'K' and resid 2058 through 2074 removed outlier: 4.084A pdb=" N VAL K2068 " --> pdb=" O SER K2064 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N SER K2074 " --> pdb=" O TRP K2070 " (cutoff:3.500A) Processing helix chain 'K' and resid 2078 through 2095 removed outlier: 3.664A pdb=" N LEU K2088 " --> pdb=" O ALA K2084 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N TYR K2093 " --> pdb=" O LEU K2089 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N GLY K2095 " --> pdb=" O ARG K2091 " (cutoff:3.500A) Processing helix chain 'K' and resid 2096 through 2107 Proline residue: K2104 - end of helix removed outlier: 5.887A pdb=" N TYR K2107 " --> pdb=" O LEU K2103 " (cutoff:3.500A) Processing helix chain 'K' and resid 2113 through 2132 removed outlier: 4.700A pdb=" N SER K2132 " --> pdb=" O ARG K2128 " (cutoff:3.500A) Processing helix chain 'K' and resid 2138 through 2153 removed outlier: 3.550A pdb=" N LEU K2142 " --> pdb=" O GLU K2138 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N ASN K2152 " --> pdb=" O GLY K2148 " (cutoff:3.500A) removed outlier: 4.689A pdb=" N ASN K2153 " --> pdb=" O ASP K2149 " (cutoff:3.500A) Processing helix chain 'K' and resid 2154 through 2160 Proline residue: K2160 - end of helix Processing helix chain 'K' and resid 2161 through 2167 Processing helix chain 'K' and resid 2168 through 2181 removed outlier: 5.034A pdb=" N GLY K2181 " --> pdb=" O VAL K2177 " (cutoff:3.500A) Processing helix chain 'K' and resid 2191 through 2207 removed outlier: 4.249A pdb=" N ALA K2195 " --> pdb=" O PRO K2191 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ARG K2199 " --> pdb=" O ALA K2195 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N ARG K2206 " --> pdb=" O CYS K2202 " (cutoff:3.500A) removed outlier: 4.944A pdb=" N ILE K2207 " --> pdb=" O TYR K2203 " (cutoff:3.500A) Processing helix chain 'K' and resid 2208 through 2219 removed outlier: 4.818A pdb=" N GLN K2212 " --> pdb=" O SER K2208 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N LYS K2213 " --> pdb=" O ARG K2209 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ALA K2214 " --> pdb=" O GLN K2210 " (cutoff:3.500A) removed outlier: 4.657A pdb=" N HIS K2218 " --> pdb=" O ALA K2214 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N LEU K2219 " --> pdb=" O MET K2215 " (cutoff:3.500A) Processing helix chain 'K' and resid 2220 through 2226 removed outlier: 4.374A pdb=" N GLU K2224 " --> pdb=" O SER K2220 " (cutoff:3.500A) removed outlier: 4.257A pdb=" N ASN K2225 " --> pdb=" O TYR K2221 " (cutoff:3.500A) removed outlier: 4.940A pdb=" N SER K2226 " --> pdb=" O LEU K2222 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 2220 through 2226' Processing helix chain 'K' and resid 2239 through 2249 removed outlier: 3.877A pdb=" N VAL K2248 " --> pdb=" O ALA K2244 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N MET K2249 " --> pdb=" O ALA K2245 " (cutoff:3.500A) Processing helix chain 'K' and resid 2251 through 2258 Processing helix chain 'K' and resid 2259 through 2274 removed outlier: 4.079A pdb=" N LEU K2263 " --> pdb=" O ARG K2259 " (cutoff:3.500A) removed outlier: 3.798A pdb=" N GLY K2272 " --> pdb=" O ARG K2268 " (cutoff:3.500A) removed outlier: 4.432A pdb=" N CYS K2273 " --> pdb=" O TYR K2269 " (cutoff:3.500A) removed outlier: 5.148A pdb=" N GLY K2274 " --> pdb=" O LEU K2270 " (cutoff:3.500A) Processing helix chain 'K' and resid 2293 through 2308 removed outlier: 5.357A pdb=" N GLU K2297 " --> pdb=" O PRO K2293 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N ARG K2298 " --> pdb=" O VAL K2294 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N TYR K2299 " --> pdb=" O GLU K2295 " (cutoff:3.500A) removed outlier: 3.830A pdb=" N PHE K2308 " --> pdb=" O ARG K2304 " (cutoff:3.500A) Processing helix chain 'K' and resid 2315 through 2329 removed outlier: 3.941A pdb=" N VAL K2320 " --> pdb=" O GLU K2316 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N ARG K2328 " --> pdb=" O LEU K2324 " (cutoff:3.500A) Proline residue: K2329 - end of helix Processing helix chain 'K' and resid 2343 through 2352 removed outlier: 3.810A pdb=" N MET K2348 " --> pdb=" O LEU K2344 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N GLU K2349 " --> pdb=" O LEU K2345 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N ALA K2351 " --> pdb=" O ALA K2347 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ILE K2352 " --> pdb=" O MET K2348 " (cutoff:3.500A) Processing helix chain 'K' and resid 2387 through 2403 removed outlier: 3.504A pdb=" N GLY K2401 " --> pdb=" O ILE K2397 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N ARG K2402 " --> pdb=" O ASP K2398 " (cutoff:3.500A) removed outlier: 4.775A pdb=" N CYS K2403 " --> pdb=" O LEU K2399 " (cutoff:3.500A) Processing helix chain 'K' and resid 2414 through 2429 removed outlier: 5.630A pdb=" N ILE K2418 " --> pdb=" O LYS K2414 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N ARG K2419 " --> pdb=" O GLY K2415 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N LEU K2427 " --> pdb=" O ILE K2423 " (cutoff:3.500A) removed outlier: 5.341A pdb=" N ILE K2428 " --> pdb=" O LEU K2424 " (cutoff:3.500A) Proline residue: K2429 - end of helix Processing helix chain 'K' and resid 2431 through 2442 removed outlier: 3.987A pdb=" N GLY K2435 " --> pdb=" O GLY K2431 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N ALA K2440 " --> pdb=" O VAL K2436 " (cutoff:3.500A) removed outlier: 4.457A pdb=" N PHE K2441 " --> pdb=" O ILE K2437 " (cutoff:3.500A) removed outlier: 4.728A pdb=" N GLN K2442 " --> pdb=" O SER K2438 " (cutoff:3.500A) Processing helix chain 'K' and resid 2462 through 2477 removed outlier: 4.727A pdb=" N LYS K2466 " --> pdb=" O CYS K2462 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N ALA K2467 " --> pdb=" O PRO K2463 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N ALA K2468 " --> pdb=" O ASP K2464 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ARG K2475 " --> pdb=" O LEU K2471 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N VAL K2476 " --> pdb=" O PHE K2472 " (cutoff:3.500A) Processing helix chain 'K' and resid 2481 through 2489 removed outlier: 3.811A pdb=" N LEU K2488 " --> pdb=" O PHE K2484 " (cutoff:3.500A) removed outlier: 4.708A pdb=" N LEU K2489 " --> pdb=" O LEU K2485 " (cutoff:3.500A) Processing helix chain 'K' and resid 2493 through 2500 removed outlier: 3.809A pdb=" N ALA K2499 " --> pdb=" O PRO K2495 " (cutoff:3.500A) removed outlier: 4.468A pdb=" N ALA K2500 " --> pdb=" O ASP K2496 " (cutoff:3.500A) Processing helix chain 'K' and resid 2511 through 2529 removed outlier: 4.388A pdb=" N LEU K2515 " --> pdb=" O THR K2511 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N ALA K2516 " --> pdb=" O ASP K2512 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N LEU K2517 " --> pdb=" O MET K2513 " (cutoff:3.500A) removed outlier: 5.998A pdb=" N ASN K2518 " --> pdb=" O ALA K2514 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N ARG K2519 " --> pdb=" O LEU K2515 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N TYR K2520 " --> pdb=" O ALA K2516 " (cutoff:3.500A) removed outlier: 4.174A pdb=" N LEU K2521 " --> pdb=" O LEU K2517 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N CYS K2522 " --> pdb=" O ASN K2518 " (cutoff:3.500A) removed outlier: 5.539A pdb=" N VAL K2525 " --> pdb=" O LEU K2521 " (cutoff:3.500A) removed outlier: 4.613A pdb=" N LEU K2526 " --> pdb=" O CYS K2522 " (cutoff:3.500A) Proline residue: K2527 - end of helix Processing helix chain 'K' and resid 2537 through 2553 Processing helix chain 'K' and resid 2558 through 2576 removed outlier: 3.936A pdb=" N LEU K2575 " --> pdb=" O GLU K2571 " (cutoff:3.500A) removed outlier: 4.145A pdb=" N SER K2576 " --> pdb=" O VAL K2572 " (cutoff:3.500A) Processing helix chain 'K' and resid 2582 through 2598 removed outlier: 4.396A pdb=" N MET K2586 " --> pdb=" O ARG K2582 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N ARG K2592 " --> pdb=" O HIS K2588 " (cutoff:3.500A) Proline residue: K2598 - end of helix Processing helix chain 'K' and resid 2605 through 2623 removed outlier: 3.660A pdb=" N LYS K2609 " --> pdb=" O LYS K2605 " (cutoff:3.500A) Processing helix chain 'K' and resid 2634 through 2651 removed outlier: 4.430A pdb=" N GLU K2638 " --> pdb=" O ALA K2634 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N PHE K2650 " --> pdb=" O PHE K2646 " (cutoff:3.500A) Processing helix chain 'K' and resid 2658 through 2679 Proline residue: K2668 - end of helix Proline residue: K2678 - end of helix Processing helix chain 'K' and resid 2719 through 2741 removed outlier: 4.350A pdb=" N ASN K2723 " --> pdb=" O GLU K2719 " (cutoff:3.500A) removed outlier: 5.246A pdb=" N LYS K2724 " --> pdb=" O TYR K2720 " (cutoff:3.500A) removed outlier: 4.834A pdb=" N GLU K2727 " --> pdb=" O ASN K2723 " (cutoff:3.500A) removed outlier: 4.265A pdb=" N ASN K2740 " --> pdb=" O ASP K2736 " (cutoff:3.500A) Processing helix chain 'K' and resid 2765 through 2774 removed outlier: 3.918A pdb=" N LYS K2769 " --> pdb=" O SER K2765 " (cutoff:3.500A) removed outlier: 4.767A pdb=" N GLU K2770 " --> pdb=" O GLU K2766 " (cutoff:3.500A) removed outlier: 4.227A pdb=" N TYR K2772 " --> pdb=" O GLU K2768 " (cutoff:3.500A) Processing helix chain 'K' and resid 2775 through 2786 removed outlier: 4.056A pdb=" N THR K2782 " --> pdb=" O GLU K2778 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N ALA K2785 " --> pdb=" O LYS K2781 " (cutoff:3.500A) removed outlier: 4.141A pdb=" N TRP K2786 " --> pdb=" O THR K2782 " (cutoff:3.500A) Processing helix chain 'K' and resid 2836 through 2864 removed outlier: 3.731A pdb=" N GLU K2862 " --> pdb=" O LYS K2858 " (cutoff:3.500A) removed outlier: 4.460A pdb=" N SER K2863 " --> pdb=" O LEU K2859 " (cutoff:3.500A) removed outlier: 5.335A pdb=" N LYS K2864 " --> pdb=" O GLU K2860 " (cutoff:3.500A) Processing helix chain 'K' and resid 2881 through 2899 removed outlier: 3.626A pdb=" N ASP K2886 " --> pdb=" O GLU K2882 " (cutoff:3.500A) removed outlier: 4.607A pdb=" N ILE K2893 " --> pdb=" O LYS K2889 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N LEU K2894 " --> pdb=" O ALA K2890 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N PHE K2896 " --> pdb=" O ASP K2892 " (cutoff:3.500A) Processing helix chain 'K' and resid 2986 through 3003 Proline residue: K2990 - end of helix removed outlier: 4.514A pdb=" N LYS K3002 " --> pdb=" O SER K2998 " (cutoff:3.500A) Processing helix chain 'K' and resid 3010 through 3028 Processing helix chain 'K' and resid 3034 through 3052 removed outlier: 3.847A pdb=" N GLU K3052 " --> pdb=" O LYS K3048 " (cutoff:3.500A) Processing helix chain 'K' and resid 3065 through 3079 removed outlier: 5.128A pdb=" N LEU K3069 " --> pdb=" O ALA K3065 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N GLU K3070 " --> pdb=" O ALA K3066 " (cutoff:3.500A) Processing helix chain 'K' and resid 3100 through 3118 Proline residue: K3104 - end of helix removed outlier: 4.260A pdb=" N GLN K3117 " --> pdb=" O ILE K3113 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N PHE K3118 " --> pdb=" O GLY K3114 " (cutoff:3.500A) Processing helix chain 'K' and resid 3125 through 3143 Processing helix chain 'K' and resid 3150 through 3164 removed outlier: 3.532A pdb=" N SER K3154 " --> pdb=" O GLU K3150 " (cutoff:3.500A) Processing helix chain 'K' and resid 3170 through 3182 removed outlier: 3.543A pdb=" N THR K3174 " --> pdb=" O ALA K3170 " (cutoff:3.500A) Processing helix chain 'K' and resid 3593 through 3607 removed outlier: 3.911A pdb=" N LYS K3597 " --> pdb=" O SER K3593 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N ARG K3598 " --> pdb=" O LYS K3594 " (cutoff:3.500A) removed outlier: 5.605A pdb=" N ALA K3607 " --> pdb=" O CYS K3603 " (cutoff:3.500A) Processing helix chain 'K' and resid 3613 through 3629 removed outlier: 7.266A pdb=" N ALA K3617 " --> pdb=" O PRO K3613 " (cutoff:3.500A) removed outlier: 4.545A pdb=" N VAL K3618 " --> pdb=" O ARG K3614 " (cutoff:3.500A) Processing helix chain 'K' and resid 3636 through 3647 removed outlier: 4.002A pdb=" N LYS K3640 " --> pdb=" O TYR K3636 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N ALA K3646 " --> pdb=" O ILE K3642 " (cutoff:3.500A) removed outlier: 4.423A pdb=" N LYS K3647 " --> pdb=" O GLU K3643 " (cutoff:3.500A) Processing helix chain 'K' and resid 3663 through 3679 removed outlier: 5.644A pdb=" N GLU K3679 " --> pdb=" O THR K3675 " (cutoff:3.500A) Processing helix chain 'K' and resid 3686 through 3700 removed outlier: 4.094A pdb=" N ASP K3694 " --> pdb=" O MET K3690 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N SER K3699 " --> pdb=" O ILE K3695 " (cutoff:3.500A) removed outlier: 4.669A pdb=" N CYS K3700 " --> pdb=" O MET K3696 " (cutoff:3.500A) Processing helix chain 'K' and resid 3714 through 3734 removed outlier: 3.662A pdb=" N LEU K3725 " --> pdb=" O GLU K3721 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N LEU K3732 " --> pdb=" O GLN K3728 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N ASP K3734 " --> pdb=" O ALA K3730 " (cutoff:3.500A) Processing helix chain 'K' and resid 3736 through 3749 removed outlier: 3.672A pdb=" N MET K3740 " --> pdb=" O GLY K3736 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N VAL K3741 " --> pdb=" O ALA K3737 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N SER K3746 " --> pdb=" O LEU K3742 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N SER K3748 " --> pdb=" O THR K3744 " (cutoff:3.500A) removed outlier: 5.318A pdb=" N LYS K3749 " --> pdb=" O ILE K3745 " (cutoff:3.500A) Processing helix chain 'K' and resid 3753 through 3768 removed outlier: 3.520A pdb=" N ALA K3757 " --> pdb=" O GLY K3753 " (cutoff:3.500A) Processing helix chain 'K' and resid 3771 through 3786 removed outlier: 4.458A pdb=" N LYS K3786 " --> pdb=" O LEU K3782 " (cutoff:3.500A) Processing helix chain 'K' and resid 3787 through 3801 removed outlier: 4.776A pdb=" N PHE K3791 " --> pdb=" O ASP K3787 " (cutoff:3.500A) removed outlier: 4.107A pdb=" N SER K3800 " --> pdb=" O GLY K3796 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N CYS K3801 " --> pdb=" O LEU K3797 " (cutoff:3.500A) Processing helix chain 'K' and resid 3805 through 3820 removed outlier: 6.986A pdb=" N PHE K3809 " --> pdb=" O ASP K3805 " (cutoff:3.500A) removed outlier: 4.553A pdb=" N GLU K3810 " --> pdb=" O LEU K3806 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N MET K3820 " --> pdb=" O GLU K3816 " (cutoff:3.500A) Processing helix chain 'K' and resid 3833 through 3849 removed outlier: 4.317A pdb=" N THR K3837 " --> pdb=" O ASP K3833 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N CYS K3848 " --> pdb=" O LEU K3844 " (cutoff:3.500A) Processing helix chain 'K' and resid 3852 through 3862 removed outlier: 3.984A pdb=" N ARG K3860 " --> pdb=" O GLN K3856 " (cutoff:3.500A) Processing helix chain 'K' and resid 3870 through 3894 removed outlier: 3.679A pdb=" N SER K3874 " --> pdb=" O ASN K3870 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N TYR K3892 " --> pdb=" O ASP K3888 " (cutoff:3.500A) Processing helix chain 'K' and resid 3900 through 3926 removed outlier: 3.569A pdb=" N LYS K3909 " --> pdb=" O ARG K3905 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N VAL K3913 " --> pdb=" O LYS K3909 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N ILE K3925 " --> pdb=" O LEU K3921 " (cutoff:3.500A) Processing helix chain 'K' and resid 3929 through 3940 removed outlier: 3.527A pdb=" N GLN K3933 " --> pdb=" O CYS K3929 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N HIS K3938 " --> pdb=" O GLN K3934 " (cutoff:3.500A) removed outlier: 4.105A pdb=" N SER K3939 " --> pdb=" O SER K3935 " (cutoff:3.500A) removed outlier: 5.427A pdb=" N ARG K3940 " --> pdb=" O LEU K3936 " (cutoff:3.500A) Processing helix chain 'K' and resid 3941 through 3961 removed outlier: 4.223A pdb=" N HIS K3954 " --> pdb=" O HIS K3950 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N GLN K3961 " --> pdb=" O MET K3957 " (cutoff:3.500A) Processing helix chain 'K' and resid 3965 through 3988 removed outlier: 4.237A pdb=" N GLU K3988 " --> pdb=" O LEU K3984 " (cutoff:3.500A) Processing helix chain 'K' and resid 3994 through 4008 removed outlier: 3.532A pdb=" N SER K4007 " --> pdb=" O MET K4003 " (cutoff:3.500A) Processing helix chain 'K' and resid 4009 through 4031 removed outlier: 3.831A pdb=" N PHE K4021 " --> pdb=" O PHE K4017 " (cutoff:3.500A) removed outlier: 4.690A pdb=" N LEU K4024 " --> pdb=" O MET K4020 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N LYS K4025 " --> pdb=" O PHE K4021 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER K4030 " --> pdb=" O ASP K4026 " (cutoff:3.500A) removed outlier: 6.073A pdb=" N ASP K4031 " --> pdb=" O LEU K4027 " (cutoff:3.500A) Processing helix chain 'K' and resid 4032 through 4037 removed outlier: 4.859A pdb=" N TYR K4036 " --> pdb=" O THR K4032 " (cutoff:3.500A) Processing helix chain 'K' and resid 4045 through 4057 removed outlier: 3.690A pdb=" N SER K4055 " --> pdb=" O LYS K4051 " (cutoff:3.500A) removed outlier: 4.251A pdb=" N LYS K4057 " --> pdb=" O MET K4053 " (cutoff:3.500A) Processing helix chain 'K' and resid 4060 through 4071 Processing helix chain 'K' and resid 4084 through 4110 removed outlier: 4.706A pdb=" N GLU K4090 " --> pdb=" O LYS K4086 " (cutoff:3.500A) Proline residue: K4091 - end of helix removed outlier: 3.693A pdb=" N ASN K4098 " --> pdb=" O ASP K4094 " (cutoff:3.500A) Processing helix chain 'K' and resid 4113 through 4124 Processing helix chain 'K' and resid 4125 through 4135 removed outlier: 3.865A pdb=" N TYR K4129 " --> pdb=" O SER K4125 " (cutoff:3.500A) Proline residue: K4132 - end of helix removed outlier: 5.888A pdb=" N GLY K4135 " --> pdb=" O GLN K4131 " (cutoff:3.500A) Processing helix chain 'K' and resid 4154 through 4164 removed outlier: 5.071A pdb=" N LYS K4163 " --> pdb=" O THR K4159 " (cutoff:3.500A) Proline residue: K4164 - end of helix Processing helix chain 'K' and resid 4165 through 4180 Processing helix chain 'K' and resid 4184 through 4207 removed outlier: 4.668A pdb=" N GLU K4188 " --> pdb=" O LYS K4184 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ILE K4207 " --> pdb=" O LEU K4203 " (cutoff:3.500A) Processing helix chain 'K' and resid 4486 through 4500 removed outlier: 3.977A pdb=" N GLN K4490 " --> pdb=" O ILE K4486 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N TYR K4495 " --> pdb=" O LYS K4491 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N PHE K4496 " --> pdb=" O LEU K4492 " (cutoff:3.500A) removed outlier: 3.929A pdb=" N ALA K4497 " --> pdb=" O LEU K4493 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N ASN K4499 " --> pdb=" O TYR K4495 " (cutoff:3.500A) Processing helix chain 'K' and resid 4501 through 4520 removed outlier: 4.651A pdb=" N PHE K4520 " --> pdb=" O PHE K4516 " (cutoff:3.500A) Processing helix chain 'K' and resid 4568 through 4614 removed outlier: 3.906A pdb=" N ILE K4578 " --> pdb=" O ARG K4574 " (cutoff:3.500A) removed outlier: 4.280A pdb=" N VAL K4596 " --> pdb=" O TYR K4592 " (cutoff:3.500A) Proline residue: K4597 - end of helix removed outlier: 3.661A pdb=" N ASP K4614 " --> pdb=" O LYS K4610 " (cutoff:3.500A) Processing helix chain 'K' and resid 4626 through 4632 removed outlier: 5.537A pdb=" N ASP K4632 " --> pdb=" O LYS K4628 " (cutoff:3.500A) Processing helix chain 'K' and resid 4649 through 4663 removed outlier: 3.519A pdb=" N LYS K4653 " --> pdb=" O PHE K4649 " (cutoff:3.500A) removed outlier: 5.656A pdb=" N GLU K4660 " --> pdb=" O ASP K4656 " (cutoff:3.500A) removed outlier: 6.638A pdb=" N PHE K4661 " --> pdb=" O LYS K4657 " (cutoff:3.500A) removed outlier: 3.764A pdb=" N TYR K4662 " --> pdb=" O TYR K4658 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N GLY K4663 " --> pdb=" O GLY K4659 " (cutoff:3.500A) Processing helix chain 'K' and resid 4664 through 4672 Processing helix chain 'K' and resid 4696 through 4702 removed outlier: 3.848A pdb=" N ILE K4702 " --> pdb=" O VAL K4698 " (cutoff:3.500A) Processing helix chain 'K' and resid 4703 through 4717 removed outlier: 3.926A pdb=" N THR K4716 " --> pdb=" O GLY K4712 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N ASP K4717 " --> pdb=" O VAL K4713 " (cutoff:3.500A) Processing helix chain 'K' and resid 4718 through 4737 removed outlier: 3.607A pdb=" N ASN K4736 " --> pdb=" O LEU K4732 " (cutoff:3.500A) Processing helix chain 'K' and resid 4744 through 4751 removed outlier: 4.793A pdb=" N ALA K4748 " --> pdb=" O LEU K4744 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N MET K4749 " --> pdb=" O LEU K4745 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N GLY K4750 " --> pdb=" O ASP K4746 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N PHE K4751 " --> pdb=" O ILE K4747 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 4744 through 4751' Processing helix chain 'K' and resid 4752 through 4763 removed outlier: 4.758A pdb=" N THR K4756 " --> pdb=" O LYS K4752 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N VAL K4761 " --> pdb=" O ILE K4757 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N THR K4762 " --> pdb=" O LEU K4758 " (cutoff:3.500A) Processing helix chain 'K' and resid 4764 through 4789 Processing helix chain 'K' and resid 4810 through 4824 removed outlier: 3.718A pdb=" N VAL K4822 " --> pdb=" O MET K4818 " (cutoff:3.500A) removed outlier: 4.557A pdb=" N ARG K4823 " --> pdb=" O TYR K4819 " (cutoff:3.500A) Processing helix chain 'K' and resid 4840 through 4855 Processing helix chain 'K' and resid 4859 through 4887 removed outlier: 4.394A pdb=" N GLU K4886 " --> pdb=" O LYS K4882 " (cutoff:3.500A) Processing helix chain 'K' and resid 4895 through 4901 removed outlier: 4.630A pdb=" N PHE K4899 " --> pdb=" O GLY K4895 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N ASP K4900 " --> pdb=" O ASN K4896 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N THR K4901 " --> pdb=" O ASP K4897 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 4895 through 4901' Processing helix chain 'K' and resid 4904 through 4912 Processing helix chain 'K' and resid 4915 through 4929 removed outlier: 4.789A pdb=" N TYR K4919 " --> pdb=" O ASN K4915 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N LEU K4920 " --> pdb=" O LEU K4916 " (cutoff:3.500A) Processing helix chain 'K' and resid 4935 through 4948 Processing helix chain 'K' and resid 4958 through 4964 removed outlier: 3.576A pdb=" N GLN K4962 " --> pdb=" O CYS K4958 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N TYR K4963 " --> pdb=" O PHE K4959 " (cutoff:3.500A) removed outlier: 5.104A pdb=" N GLU K4964 " --> pdb=" O ARG K4960 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 4958 through 4964' Processing helix chain 'K' and resid 2232 through 2237 removed outlier: 3.557A pdb=" N MET K2235 " --> pdb=" O SER K2232 " (cutoff:3.500A) removed outlier: 4.418A pdb=" N ARG K2236 " --> pdb=" O PRO K2233 " (cutoff:3.500A) removed outlier: 6.741A pdb=" N GLY K2237 " --> pdb=" O ALA K2234 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 2232 through 2237' Processing helix chain 'K' and resid 4738 through 4743 removed outlier: 3.955A pdb=" N ALA K4741 " --> pdb=" O PHE K4738 " (cutoff:3.500A) removed outlier: 4.156A pdb=" N ALA K4742 " --> pdb=" O PHE K4739 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N HIS K4743 " --> pdb=" O PHE K4740 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 4738 through 4743' Processing helix chain 'K' and resid 54 through 59 Proline residue: K 59 - end of helix No H-bonds generated for 'chain 'K' and resid 54 through 59' Processing helix chain 'K' and resid 2406 through 2411 Processing helix chain 'C' and resid 6 through 22 removed outlier: 4.718A pdb=" N LYS C 22 " --> pdb=" O SER C 18 " (cutoff:3.500A) Processing helix chain 'C' and resid 30 through 41 removed outlier: 4.680A pdb=" N GLY C 34 " --> pdb=" O THR C 30 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N THR C 35 " --> pdb=" O LYS C 31 " (cutoff:3.500A) Processing helix chain 'C' and resid 45 through 56 Processing helix chain 'C' and resid 65 through 95 removed outlier: 3.811A pdb=" N PHE C 69 " --> pdb=" O ASP C 65 " (cutoff:3.500A) removed outlier: 4.115A pdb=" N THR C 80 " --> pdb=" O LYS C 76 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N PHE C 90 " --> pdb=" O ILE C 86 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N PHE C 93 " --> pdb=" O ALA C 89 " (cutoff:3.500A) removed outlier: 4.533A pdb=" N ASP C 94 " --> pdb=" O PHE C 90 " (cutoff:3.500A) removed outlier: 5.815A pdb=" N LYS C 95 " --> pdb=" O ARG C 91 " (cutoff:3.500A) Processing helix chain 'C' and resid 102 through 110 Processing helix chain 'C' and resid 118 through 129 removed outlier: 4.100A pdb=" N VAL C 122 " --> pdb=" O THR C 118 " (cutoff:3.500A) removed outlier: 4.195A pdb=" N GLU C 128 " --> pdb=" O GLU C 124 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N ALA C 129 " --> pdb=" O MET C 125 " (cutoff:3.500A) Processing helix chain 'C' and resid 138 through 148 removed outlier: 4.023A pdb=" N PHE C 142 " --> pdb=" O ASN C 138 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N ALA C 148 " --> pdb=" O GLN C 144 " (cutoff:3.500A) Processing helix chain 'F' and resid 6 through 22 removed outlier: 4.718A pdb=" N LYS F 22 " --> pdb=" O SER F 18 " (cutoff:3.500A) Processing helix chain 'F' and resid 30 through 41 removed outlier: 4.680A pdb=" N GLY F 34 " --> pdb=" O THR F 30 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N THR F 35 " --> pdb=" O LYS F 31 " (cutoff:3.500A) Processing helix chain 'F' and resid 45 through 56 Processing helix chain 'F' and resid 65 through 95 removed outlier: 3.812A pdb=" N PHE F 69 " --> pdb=" O ASP F 65 " (cutoff:3.500A) removed outlier: 4.114A pdb=" N THR F 80 " --> pdb=" O LYS F 76 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N PHE F 90 " --> pdb=" O ILE F 86 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N PHE F 93 " --> pdb=" O ALA F 89 " (cutoff:3.500A) removed outlier: 4.533A pdb=" N ASP F 94 " --> pdb=" O PHE F 90 " (cutoff:3.500A) removed outlier: 5.816A pdb=" N LYS F 95 " --> pdb=" O ARG F 91 " (cutoff:3.500A) Processing helix chain 'F' and resid 102 through 110 Processing helix chain 'F' and resid 118 through 129 removed outlier: 4.101A pdb=" N VAL F 122 " --> pdb=" O THR F 118 " (cutoff:3.500A) removed outlier: 4.195A pdb=" N GLU F 128 " --> pdb=" O GLU F 124 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N ALA F 129 " --> pdb=" O MET F 125 " (cutoff:3.500A) Processing helix chain 'F' and resid 138 through 148 removed outlier: 4.023A pdb=" N PHE F 142 " --> pdb=" O ASN F 138 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N ALA F 148 " --> pdb=" O GLN F 144 " (cutoff:3.500A) Processing helix chain 'I' and resid 6 through 22 removed outlier: 4.718A pdb=" N LYS I 22 " --> pdb=" O SER I 18 " (cutoff:3.500A) Processing helix chain 'I' and resid 30 through 41 removed outlier: 4.681A pdb=" N GLY I 34 " --> pdb=" O THR I 30 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N THR I 35 " --> pdb=" O LYS I 31 " (cutoff:3.500A) Processing helix chain 'I' and resid 45 through 56 Processing helix chain 'I' and resid 65 through 95 removed outlier: 3.811A pdb=" N PHE I 69 " --> pdb=" O ASP I 65 " (cutoff:3.500A) removed outlier: 4.114A pdb=" N THR I 80 " --> pdb=" O LYS I 76 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N PHE I 90 " --> pdb=" O ILE I 86 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N PHE I 93 " --> pdb=" O ALA I 89 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N ASP I 94 " --> pdb=" O PHE I 90 " (cutoff:3.500A) removed outlier: 5.814A pdb=" N LYS I 95 " --> pdb=" O ARG I 91 " (cutoff:3.500A) Processing helix chain 'I' and resid 102 through 110 Processing helix chain 'I' and resid 118 through 129 removed outlier: 4.100A pdb=" N VAL I 122 " --> pdb=" O THR I 118 " (cutoff:3.500A) removed outlier: 4.197A pdb=" N GLU I 128 " --> pdb=" O GLU I 124 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N ALA I 129 " --> pdb=" O MET I 125 " (cutoff:3.500A) Processing helix chain 'I' and resid 138 through 148 removed outlier: 4.023A pdb=" N PHE I 142 " --> pdb=" O ASN I 138 " (cutoff:3.500A) removed outlier: 4.076A pdb=" N ALA I 148 " --> pdb=" O GLN I 144 " (cutoff:3.500A) Processing helix chain 'L' and resid 6 through 22 removed outlier: 4.718A pdb=" N LYS L 22 " --> pdb=" O SER L 18 " (cutoff:3.500A) Processing helix chain 'L' and resid 30 through 41 removed outlier: 4.680A pdb=" N GLY L 34 " --> pdb=" O THR L 30 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N THR L 35 " --> pdb=" O LYS L 31 " (cutoff:3.500A) Processing helix chain 'L' and resid 45 through 56 Processing helix chain 'L' and resid 65 through 95 removed outlier: 3.811A pdb=" N PHE L 69 " --> pdb=" O ASP L 65 " (cutoff:3.500A) removed outlier: 4.114A pdb=" N THR L 80 " --> pdb=" O LYS L 76 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N PHE L 90 " --> pdb=" O ILE L 86 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N PHE L 93 " --> pdb=" O ALA L 89 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N ASP L 94 " --> pdb=" O PHE L 90 " (cutoff:3.500A) removed outlier: 5.814A pdb=" N LYS L 95 " --> pdb=" O ARG L 91 " (cutoff:3.500A) Processing helix chain 'L' and resid 102 through 110 Processing helix chain 'L' and resid 118 through 129 removed outlier: 4.100A pdb=" N VAL L 122 " --> pdb=" O THR L 118 " (cutoff:3.500A) removed outlier: 4.195A pdb=" N GLU L 128 " --> pdb=" O GLU L 124 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N ALA L 129 " --> pdb=" O MET L 125 " (cutoff:3.500A) Processing helix chain 'L' and resid 138 through 148 removed outlier: 4.023A pdb=" N PHE L 142 " --> pdb=" O ASN L 138 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N ALA L 148 " --> pdb=" O GLN L 144 " (cutoff:3.500A) Processing sheet with id= 1, first strand: chain 'A' and resid 2 through 7 removed outlier: 4.056A pdb=" N THR A 75 " --> pdb=" O GLU A 3 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N GLU A 5 " --> pdb=" O LYS A 73 " (cutoff:3.500A) removed outlier: 6.638A pdb=" N ARG A 71 " --> pdb=" O ILE A 7 " (cutoff:3.500A) removed outlier: 4.417A pdb=" N LEU A 74 " --> pdb=" O PHE A 99 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N PHE A 99 " --> pdb=" O LEU A 74 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N LEU A 97 " --> pdb=" O CYS A 76 " (cutoff:3.500A) removed outlier: 3.887A pdb=" N ASP A 100 " --> pdb=" O THR A 27 " (cutoff:3.500A) removed outlier: 3.966A pdb=" N GLU A 102 " --> pdb=" O HIS A 25 " (cutoff:3.500A) removed outlier: 6.385A pdb=" N VAL A 23 " --> pdb=" O LEU A 104 " (cutoff:3.500A) removed outlier: 4.071A pdb=" N LEU A 106 " --> pdb=" O THR A 21 " (cutoff:3.500A) removed outlier: 6.038A pdb=" N THR A 21 " --> pdb=" O LEU A 106 " (cutoff:3.500A) Processing sheet with id= 2, first strand: chain 'D' and resid 2 through 7 removed outlier: 4.056A pdb=" N THR D 75 " --> pdb=" O GLU D 3 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N GLU D 5 " --> pdb=" O LYS D 73 " (cutoff:3.500A) removed outlier: 6.638A pdb=" N ARG D 71 " --> pdb=" O ILE D 7 " (cutoff:3.500A) removed outlier: 4.416A pdb=" N LEU D 74 " --> pdb=" O PHE D 99 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N PHE D 99 " --> pdb=" O LEU D 74 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N LEU D 97 " --> pdb=" O CYS D 76 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N ASP D 100 " --> pdb=" O THR D 27 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N GLU D 102 " --> pdb=" O HIS D 25 " (cutoff:3.500A) removed outlier: 6.386A pdb=" N VAL D 23 " --> pdb=" O LEU D 104 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N LEU D 106 " --> pdb=" O THR D 21 " (cutoff:3.500A) removed outlier: 6.038A pdb=" N THR D 21 " --> pdb=" O LEU D 106 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'G' and resid 2 through 7 removed outlier: 4.057A pdb=" N THR G 75 " --> pdb=" O GLU G 3 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N GLU G 5 " --> pdb=" O LYS G 73 " (cutoff:3.500A) removed outlier: 6.638A pdb=" N ARG G 71 " --> pdb=" O ILE G 7 " (cutoff:3.500A) removed outlier: 4.417A pdb=" N LEU G 74 " --> pdb=" O PHE G 99 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N PHE G 99 " --> pdb=" O LEU G 74 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N LEU G 97 " --> pdb=" O CYS G 76 " (cutoff:3.500A) removed outlier: 3.887A pdb=" N ASP G 100 " --> pdb=" O THR G 27 " (cutoff:3.500A) removed outlier: 3.967A pdb=" N GLU G 102 " --> pdb=" O HIS G 25 " (cutoff:3.500A) removed outlier: 6.385A pdb=" N VAL G 23 " --> pdb=" O LEU G 104 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N LEU G 106 " --> pdb=" O THR G 21 " (cutoff:3.500A) removed outlier: 6.039A pdb=" N THR G 21 " --> pdb=" O LEU G 106 " (cutoff:3.500A) Processing sheet with id= 4, first strand: chain 'J' and resid 2 through 7 removed outlier: 4.056A pdb=" N THR J 75 " --> pdb=" O GLU J 3 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N GLU J 5 " --> pdb=" O LYS J 73 " (cutoff:3.500A) removed outlier: 6.637A pdb=" N ARG J 71 " --> pdb=" O ILE J 7 " (cutoff:3.500A) removed outlier: 4.416A pdb=" N LEU J 74 " --> pdb=" O PHE J 99 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N PHE J 99 " --> pdb=" O LEU J 74 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N LEU J 97 " --> pdb=" O CYS J 76 " (cutoff:3.500A) removed outlier: 3.887A pdb=" N ASP J 100 " --> pdb=" O THR J 27 " (cutoff:3.500A) removed outlier: 3.967A pdb=" N GLU J 102 " --> pdb=" O HIS J 25 " (cutoff:3.500A) removed outlier: 6.385A pdb=" N VAL J 23 " --> pdb=" O LEU J 104 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N LEU J 106 " --> pdb=" O THR J 21 " (cutoff:3.500A) removed outlier: 6.039A pdb=" N THR J 21 " --> pdb=" O LEU J 106 " (cutoff:3.500A) Processing sheet with id= 5, first strand: chain 'B' and resid 47 through 52 removed outlier: 3.502A pdb=" N GLU B 50 " --> pdb=" O CYS B 36 " (cutoff:3.500A) removed outlier: 5.999A pdb=" N LYS B 34 " --> pdb=" O THR B 52 " (cutoff:3.500A) removed outlier: 5.443A pdb=" N LEU B 22 " --> pdb=" O LEU B 37 " (cutoff:3.500A) removed outlier: 10.328A pdb=" N ALA B 39 " --> pdb=" O VAL B 20 " (cutoff:3.500A) removed outlier: 13.271A pdb=" N VAL B 20 " --> pdb=" O ALA B 39 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N ALA B 215 " --> pdb=" O VAL B 21 " (cutoff:3.500A) Processing sheet with id= 6, first strand: chain 'B' and resid 67 through 70 removed outlier: 4.208A pdb=" N GLU B 70 " --> pdb=" O LEU B 120 " (cutoff:3.500A) removed outlier: 6.781A pdb=" N LEU B 120 " --> pdb=" O GLU B 70 " (cutoff:3.500A) Processing sheet with id= 7, first strand: chain 'B' and resid 129 through 132 removed outlier: 3.629A pdb=" N GLY B 148 " --> pdb=" O CYS B 131 " (cutoff:3.500A) Processing sheet with id= 8, first strand: chain 'B' and resid 160 through 165 No H-bonds generated for sheet with id= 8 Processing sheet with id= 9, first strand: chain 'B' and resid 193 through 196 Processing sheet with id= 10, first strand: chain 'B' and resid 243 through 247 removed outlier: 5.895A pdb=" N VAL B 260 " --> pdb=" O ALA B 391 " (cutoff:3.500A) removed outlier: 3.873A pdb=" N ALA B 391 " --> pdb=" O VAL B 260 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N ARG B 389 " --> pdb=" O TYR B 262 " (cutoff:3.500A) removed outlier: 4.610A pdb=" N LYS B 390 " --> pdb=" O GLN B 375 " (cutoff:3.500A) Processing sheet with id= 11, first strand: chain 'B' and resid 295 through 299 removed outlier: 4.545A pdb=" N ASP B 232 " --> pdb=" O LEU B 277 " (cutoff:3.500A) Processing sheet with id= 12, first strand: chain 'B' and resid 304 through 309 No H-bonds generated for sheet with id= 12 Processing sheet with id= 13, first strand: chain 'B' and resid 329 through 332 Processing sheet with id= 14, first strand: chain 'B' and resid 644 through 650 removed outlier: 3.934A pdb=" N GLN B 645 " --> pdb=" O HIS B1631 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N VAL B 649 " --> pdb=" O PHE B1627 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N LEU B1618 " --> pdb=" O GLU B1613 " (cutoff:3.500A) Processing sheet with id= 15, first strand: chain 'B' and resid 652 through 656 removed outlier: 3.671A pdb=" N SER B 653 " --> pdb=" O PHE B 794 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N VAL B 792 " --> pdb=" O MET B 655 " (cutoff:3.500A) removed outlier: 6.671A pdb=" N GLY B 696 " --> pdb=" O VAL B 791 " (cutoff:3.500A) Processing sheet with id= 16, first strand: chain 'B' and resid 766 through 769 removed outlier: 3.596A pdb=" N ARG B 769 " --> pdb=" O SER B 756 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N ASP B 753 " --> pdb=" O VAL B 679 " (cutoff:3.500A) removed outlier: 6.607A pdb=" N LYS B 671 " --> pdb=" O LEU B 761 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N GLU B 676 " --> pdb=" O LEU B 803 " (cutoff:3.500A) removed outlier: 6.388A pdb=" N LYS B 799 " --> pdb=" O ASP B 680 " (cutoff:3.500A) Processing sheet with id= 17, first strand: chain 'B' and resid 776 through 780 No H-bonds generated for sheet with id= 17 Processing sheet with id= 18, first strand: chain 'B' and resid 903 through 906 No H-bonds generated for sheet with id= 18 Processing sheet with id= 19, first strand: chain 'B' and resid 1085 through 1090 removed outlier: 4.830A pdb=" N ARG B1086 " --> pdb=" O LEU B1207 " (cutoff:3.500A) removed outlier: 7.168A pdb=" N ASP B1112 " --> pdb=" O GLY B1208 " (cutoff:3.500A) removed outlier: 7.846A pdb=" N MET B1113 " --> pdb=" O GLY B1139 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N GLY B1139 " --> pdb=" O MET B1113 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N ALA B1136 " --> pdb=" O TRP B1145 " (cutoff:3.500A) removed outlier: 4.857A pdb=" N ALA B1142 " --> pdb=" O TYR B1152 " (cutoff:3.500A) Processing sheet with id= 20, first strand: chain 'B' and resid 1172 through 1177 removed outlier: 4.238A pdb=" N THR B1172 " --> pdb=" O ASP B1167 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N THR B1176 " --> pdb=" O GLY B1163 " (cutoff:3.500A) removed outlier: 4.612A pdb=" N GLY B1163 " --> pdb=" O THR B1176 " (cutoff:3.500A) removed outlier: 5.297A pdb=" N PHE B1105 " --> pdb=" O VAL B1162 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N PHE B1103 " --> pdb=" O CYS B1164 " (cutoff:3.500A) removed outlier: 5.826A pdb=" N GLY B1099 " --> pdb=" O MET B1168 " (cutoff:3.500A) removed outlier: 4.150A pdb=" N GLU B1104 " --> pdb=" O ASN B1216 " (cutoff:3.500A) removed outlier: 3.656A pdb=" N ASN B1216 " --> pdb=" O GLU B1104 " (cutoff:3.500A) removed outlier: 6.554A pdb=" N VAL B1212 " --> pdb=" O VAL B1108 " (cutoff:3.500A) Processing sheet with id= 21, first strand: chain 'B' and resid 1249 through 1252 removed outlier: 6.477A pdb=" N MET B1249 " --> pdb=" O PHE B1603 " (cutoff:3.500A) Processing sheet with id= 22, first strand: chain 'B' and resid 1256 through 1260 Processing sheet with id= 23, first strand: chain 'B' and resid 1268 through 1274 removed outlier: 3.880A pdb=" N GLU B1269 " --> pdb=" O GLY B1291 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N GLY B1291 " --> pdb=" O GLU B1269 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N THR B1271 " --> pdb=" O SER B1289 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N SER B1289 " --> pdb=" O THR B1271 " (cutoff:3.500A) Processing sheet with id= 24, first strand: chain 'B' and resid 1299 through 1304 removed outlier: 5.712A pdb=" N THR B1537 " --> pdb=" O CYS B1310 " (cutoff:3.500A) Processing sheet with id= 25, first strand: chain 'B' and resid 1486 through 1490 removed outlier: 3.972A pdb=" N MET B1487 " --> pdb=" O TRP B1445 " (cutoff:3.500A) removed outlier: 4.369A pdb=" N TRP B1445 " --> pdb=" O MET B1487 " (cutoff:3.500A) Processing sheet with id= 26, first strand: chain 'B' and resid 1517 through 1521 removed outlier: 4.323A pdb=" N LEU B1517 " --> pdb=" O VAL B1511 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N TYR B1428 " --> pdb=" O GLY B1508 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N TYR B1426 " --> pdb=" O VAL B1510 " (cutoff:3.500A) removed outlier: 7.066A pdb=" N SER B1429 " --> pdb=" O GLU B1556 " (cutoff:3.500A) removed outlier: 7.935A pdb=" N VAL B1552 " --> pdb=" O PHE B1433 " (cutoff:3.500A) Processing sheet with id= 27, first strand: chain 'B' and resid 4136 through 4140 removed outlier: 3.554A pdb=" N ILE B4137 " --> pdb=" O VAL B4149 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N VAL B4149 " --> pdb=" O ILE B4137 " (cutoff:3.500A) Processing sheet with id= 28, first strand: chain 'B' and resid 4521 through 4524 removed outlier: 3.887A pdb=" N LYS B4522 " --> pdb=" O TYR B4560 " (cutoff:3.500A) removed outlier: 4.710A pdb=" N VAL B4558 " --> pdb=" O SER B4524 " (cutoff:3.500A) Processing sheet with id= 29, first strand: chain 'B' and resid 1441 through 1446 removed outlier: 5.271A pdb=" N TRP B1442 " --> pdb=" O PHE B1544 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N GLY B1444 " --> pdb=" O ALA B1542 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N ALA B1542 " --> pdb=" O GLY B1444 " (cutoff:3.500A) Processing sheet with id= 30, first strand: chain 'E' and resid 47 through 52 removed outlier: 3.501A pdb=" N GLU E 50 " --> pdb=" O CYS E 36 " (cutoff:3.500A) removed outlier: 5.999A pdb=" N LYS E 34 " --> pdb=" O THR E 52 " (cutoff:3.500A) removed outlier: 5.443A pdb=" N LEU E 22 " --> pdb=" O LEU E 37 " (cutoff:3.500A) removed outlier: 10.329A pdb=" N ALA E 39 " --> pdb=" O VAL E 20 " (cutoff:3.500A) removed outlier: 13.272A pdb=" N VAL E 20 " --> pdb=" O ALA E 39 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N ALA E 215 " --> pdb=" O VAL E 21 " (cutoff:3.500A) Processing sheet with id= 31, first strand: chain 'E' and resid 67 through 70 removed outlier: 4.207A pdb=" N GLU E 70 " --> pdb=" O LEU E 120 " (cutoff:3.500A) removed outlier: 6.780A pdb=" N LEU E 120 " --> pdb=" O GLU E 70 " (cutoff:3.500A) Processing sheet with id= 32, first strand: chain 'E' and resid 129 through 132 removed outlier: 3.630A pdb=" N GLY E 148 " --> pdb=" O CYS E 131 " (cutoff:3.500A) Processing sheet with id= 33, first strand: chain 'E' and resid 160 through 165 No H-bonds generated for sheet with id= 33 Processing sheet with id= 34, first strand: chain 'E' and resid 193 through 196 Processing sheet with id= 35, first strand: chain 'E' and resid 243 through 247 removed outlier: 5.896A pdb=" N VAL E 260 " --> pdb=" O ALA E 391 " (cutoff:3.500A) removed outlier: 3.874A pdb=" N ALA E 391 " --> pdb=" O VAL E 260 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N ARG E 389 " --> pdb=" O TYR E 262 " (cutoff:3.500A) removed outlier: 4.610A pdb=" N LYS E 390 " --> pdb=" O GLN E 375 " (cutoff:3.500A) Processing sheet with id= 36, first strand: chain 'E' and resid 295 through 299 removed outlier: 4.545A pdb=" N ASP E 232 " --> pdb=" O LEU E 277 " (cutoff:3.500A) Processing sheet with id= 37, first strand: chain 'E' and resid 304 through 309 No H-bonds generated for sheet with id= 37 Processing sheet with id= 38, first strand: chain 'E' and resid 329 through 332 Processing sheet with id= 39, first strand: chain 'E' and resid 644 through 650 removed outlier: 3.933A pdb=" N GLN E 645 " --> pdb=" O HIS E1631 " (cutoff:3.500A) removed outlier: 4.583A pdb=" N VAL E 649 " --> pdb=" O PHE E1627 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N LEU E1618 " --> pdb=" O GLU E1613 " (cutoff:3.500A) Processing sheet with id= 40, first strand: chain 'E' and resid 652 through 656 removed outlier: 3.671A pdb=" N SER E 653 " --> pdb=" O PHE E 794 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N VAL E 792 " --> pdb=" O MET E 655 " (cutoff:3.500A) removed outlier: 6.670A pdb=" N GLY E 696 " --> pdb=" O VAL E 791 " (cutoff:3.500A) Processing sheet with id= 41, first strand: chain 'E' and resid 766 through 769 removed outlier: 3.596A pdb=" N ARG E 769 " --> pdb=" O SER E 756 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N ASP E 753 " --> pdb=" O VAL E 679 " (cutoff:3.500A) removed outlier: 6.608A pdb=" N LYS E 671 " --> pdb=" O LEU E 761 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N GLU E 676 " --> pdb=" O LEU E 803 " (cutoff:3.500A) removed outlier: 6.388A pdb=" N LYS E 799 " --> pdb=" O ASP E 680 " (cutoff:3.500A) Processing sheet with id= 42, first strand: chain 'E' and resid 776 through 780 No H-bonds generated for sheet with id= 42 Processing sheet with id= 43, first strand: chain 'E' and resid 903 through 906 No H-bonds generated for sheet with id= 43 Processing sheet with id= 44, first strand: chain 'E' and resid 1085 through 1090 removed outlier: 4.830A pdb=" N ARG E1086 " --> pdb=" O LEU E1207 " (cutoff:3.500A) removed outlier: 7.167A pdb=" N ASP E1112 " --> pdb=" O GLY E1208 " (cutoff:3.500A) removed outlier: 7.846A pdb=" N MET E1113 " --> pdb=" O GLY E1139 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N GLY E1139 " --> pdb=" O MET E1113 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N ALA E1136 " --> pdb=" O TRP E1145 " (cutoff:3.500A) removed outlier: 4.857A pdb=" N ALA E1142 " --> pdb=" O TYR E1152 " (cutoff:3.500A) Processing sheet with id= 45, first strand: chain 'E' and resid 1172 through 1177 removed outlier: 4.238A pdb=" N THR E1172 " --> pdb=" O ASP E1167 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N THR E1176 " --> pdb=" O GLY E1163 " (cutoff:3.500A) removed outlier: 4.611A pdb=" N GLY E1163 " --> pdb=" O THR E1176 " (cutoff:3.500A) removed outlier: 5.296A pdb=" N PHE E1105 " --> pdb=" O VAL E1162 " (cutoff:3.500A) removed outlier: 3.825A pdb=" N PHE E1103 " --> pdb=" O CYS E1164 " (cutoff:3.500A) removed outlier: 5.826A pdb=" N GLY E1099 " --> pdb=" O MET E1168 " (cutoff:3.500A) removed outlier: 4.150A pdb=" N GLU E1104 " --> pdb=" O ASN E1216 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N ASN E1216 " --> pdb=" O GLU E1104 " (cutoff:3.500A) removed outlier: 6.553A pdb=" N VAL E1212 " --> pdb=" O VAL E1108 " (cutoff:3.500A) Processing sheet with id= 46, first strand: chain 'E' and resid 1249 through 1252 removed outlier: 6.479A pdb=" N MET E1249 " --> pdb=" O PHE E1603 " (cutoff:3.500A) Processing sheet with id= 47, first strand: chain 'E' and resid 1256 through 1260 Processing sheet with id= 48, first strand: chain 'E' and resid 1268 through 1274 removed outlier: 3.880A pdb=" N GLU E1269 " --> pdb=" O GLY E1291 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N GLY E1291 " --> pdb=" O GLU E1269 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N THR E1271 " --> pdb=" O SER E1289 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N SER E1289 " --> pdb=" O THR E1271 " (cutoff:3.500A) Processing sheet with id= 49, first strand: chain 'E' and resid 1299 through 1304 removed outlier: 5.713A pdb=" N THR E1537 " --> pdb=" O CYS E1310 " (cutoff:3.500A) Processing sheet with id= 50, first strand: chain 'E' and resid 1486 through 1490 removed outlier: 3.972A pdb=" N MET E1487 " --> pdb=" O TRP E1445 " (cutoff:3.500A) removed outlier: 4.368A pdb=" N TRP E1445 " --> pdb=" O MET E1487 " (cutoff:3.500A) Processing sheet with id= 51, first strand: chain 'E' and resid 1517 through 1521 removed outlier: 4.322A pdb=" N LEU E1517 " --> pdb=" O VAL E1511 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N TYR E1428 " --> pdb=" O GLY E1508 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N TYR E1426 " --> pdb=" O VAL E1510 " (cutoff:3.500A) removed outlier: 7.065A pdb=" N SER E1429 " --> pdb=" O GLU E1556 " (cutoff:3.500A) removed outlier: 7.935A pdb=" N VAL E1552 " --> pdb=" O PHE E1433 " (cutoff:3.500A) Processing sheet with id= 52, first strand: chain 'E' and resid 4136 through 4140 removed outlier: 3.555A pdb=" N ILE E4137 " --> pdb=" O VAL E4149 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N VAL E4149 " --> pdb=" O ILE E4137 " (cutoff:3.500A) Processing sheet with id= 53, first strand: chain 'E' and resid 4521 through 4524 removed outlier: 3.888A pdb=" N LYS E4522 " --> pdb=" O TYR E4560 " (cutoff:3.500A) removed outlier: 4.709A pdb=" N VAL E4558 " --> pdb=" O SER E4524 " (cutoff:3.500A) Processing sheet with id= 54, first strand: chain 'E' and resid 1441 through 1446 removed outlier: 5.271A pdb=" N TRP E1442 " --> pdb=" O PHE E1544 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N GLY E1444 " --> pdb=" O ALA E1542 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N ALA E1542 " --> pdb=" O GLY E1444 " (cutoff:3.500A) Processing sheet with id= 55, first strand: chain 'H' and resid 47 through 52 removed outlier: 3.501A pdb=" N GLU H 50 " --> pdb=" O CYS H 36 " (cutoff:3.500A) removed outlier: 5.999A pdb=" N LYS H 34 " --> pdb=" O THR H 52 " (cutoff:3.500A) removed outlier: 5.444A pdb=" N LEU H 22 " --> pdb=" O LEU H 37 " (cutoff:3.500A) removed outlier: 10.329A pdb=" N ALA H 39 " --> pdb=" O VAL H 20 " (cutoff:3.500A) removed outlier: 13.271A pdb=" N VAL H 20 " --> pdb=" O ALA H 39 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N ALA H 215 " --> pdb=" O VAL H 21 " (cutoff:3.500A) Processing sheet with id= 56, first strand: chain 'H' and resid 67 through 70 removed outlier: 4.207A pdb=" N GLU H 70 " --> pdb=" O LEU H 120 " (cutoff:3.500A) removed outlier: 6.781A pdb=" N LEU H 120 " --> pdb=" O GLU H 70 " (cutoff:3.500A) Processing sheet with id= 57, first strand: chain 'H' and resid 129 through 132 removed outlier: 3.629A pdb=" N GLY H 148 " --> pdb=" O CYS H 131 " (cutoff:3.500A) Processing sheet with id= 58, first strand: chain 'H' and resid 160 through 165 No H-bonds generated for sheet with id= 58 Processing sheet with id= 59, first strand: chain 'H' and resid 193 through 196 Processing sheet with id= 60, first strand: chain 'H' and resid 243 through 247 removed outlier: 5.895A pdb=" N VAL H 260 " --> pdb=" O ALA H 391 " (cutoff:3.500A) removed outlier: 3.874A pdb=" N ALA H 391 " --> pdb=" O VAL H 260 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N ARG H 389 " --> pdb=" O TYR H 262 " (cutoff:3.500A) removed outlier: 4.610A pdb=" N LYS H 390 " --> pdb=" O GLN H 375 " (cutoff:3.500A) Processing sheet with id= 61, first strand: chain 'H' and resid 295 through 299 removed outlier: 4.545A pdb=" N ASP H 232 " --> pdb=" O LEU H 277 " (cutoff:3.500A) Processing sheet with id= 62, first strand: chain 'H' and resid 304 through 309 No H-bonds generated for sheet with id= 62 Processing sheet with id= 63, first strand: chain 'H' and resid 329 through 332 Processing sheet with id= 64, first strand: chain 'H' and resid 644 through 650 removed outlier: 3.934A pdb=" N GLN H 645 " --> pdb=" O HIS H1631 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N VAL H 649 " --> pdb=" O PHE H1627 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N LEU H1618 " --> pdb=" O GLU H1613 " (cutoff:3.500A) Processing sheet with id= 65, first strand: chain 'H' and resid 652 through 656 removed outlier: 3.670A pdb=" N SER H 653 " --> pdb=" O PHE H 794 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N VAL H 792 " --> pdb=" O MET H 655 " (cutoff:3.500A) removed outlier: 6.670A pdb=" N GLY H 696 " --> pdb=" O VAL H 791 " (cutoff:3.500A) Processing sheet with id= 66, first strand: chain 'H' and resid 766 through 769 removed outlier: 3.597A pdb=" N ARG H 769 " --> pdb=" O SER H 756 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N ASP H 753 " --> pdb=" O VAL H 679 " (cutoff:3.500A) removed outlier: 6.607A pdb=" N LYS H 671 " --> pdb=" O LEU H 761 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N GLU H 676 " --> pdb=" O LEU H 803 " (cutoff:3.500A) removed outlier: 6.388A pdb=" N LYS H 799 " --> pdb=" O ASP H 680 " (cutoff:3.500A) Processing sheet with id= 67, first strand: chain 'H' and resid 776 through 780 No H-bonds generated for sheet with id= 67 Processing sheet with id= 68, first strand: chain 'H' and resid 903 through 906 No H-bonds generated for sheet with id= 68 Processing sheet with id= 69, first strand: chain 'H' and resid 1085 through 1090 removed outlier: 4.830A pdb=" N ARG H1086 " --> pdb=" O LEU H1207 " (cutoff:3.500A) removed outlier: 7.168A pdb=" N ASP H1112 " --> pdb=" O GLY H1208 " (cutoff:3.500A) removed outlier: 7.847A pdb=" N MET H1113 " --> pdb=" O GLY H1139 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N GLY H1139 " --> pdb=" O MET H1113 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N ALA H1136 " --> pdb=" O TRP H1145 " (cutoff:3.500A) removed outlier: 4.857A pdb=" N ALA H1142 " --> pdb=" O TYR H1152 " (cutoff:3.500A) Processing sheet with id= 70, first strand: chain 'H' and resid 1172 through 1177 removed outlier: 4.238A pdb=" N THR H1172 " --> pdb=" O ASP H1167 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N THR H1176 " --> pdb=" O GLY H1163 " (cutoff:3.500A) removed outlier: 4.612A pdb=" N GLY H1163 " --> pdb=" O THR H1176 " (cutoff:3.500A) removed outlier: 5.297A pdb=" N PHE H1105 " --> pdb=" O VAL H1162 " (cutoff:3.500A) removed outlier: 3.825A pdb=" N PHE H1103 " --> pdb=" O CYS H1164 " (cutoff:3.500A) removed outlier: 5.827A pdb=" N GLY H1099 " --> pdb=" O MET H1168 " (cutoff:3.500A) removed outlier: 4.150A pdb=" N GLU H1104 " --> pdb=" O ASN H1216 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N ASN H1216 " --> pdb=" O GLU H1104 " (cutoff:3.500A) removed outlier: 6.554A pdb=" N VAL H1212 " --> pdb=" O VAL H1108 " (cutoff:3.500A) Processing sheet with id= 71, first strand: chain 'H' and resid 1249 through 1252 removed outlier: 6.478A pdb=" N MET H1249 " --> pdb=" O PHE H1603 " (cutoff:3.500A) Processing sheet with id= 72, first strand: chain 'H' and resid 1256 through 1260 Processing sheet with id= 73, first strand: chain 'H' and resid 1268 through 1274 removed outlier: 3.880A pdb=" N GLU H1269 " --> pdb=" O GLY H1291 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N GLY H1291 " --> pdb=" O GLU H1269 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N THR H1271 " --> pdb=" O SER H1289 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N SER H1289 " --> pdb=" O THR H1271 " (cutoff:3.500A) Processing sheet with id= 74, first strand: chain 'H' and resid 1299 through 1304 removed outlier: 5.713A pdb=" N THR H1537 " --> pdb=" O CYS H1310 " (cutoff:3.500A) Processing sheet with id= 75, first strand: chain 'H' and resid 1486 through 1490 removed outlier: 3.972A pdb=" N MET H1487 " --> pdb=" O TRP H1445 " (cutoff:3.500A) removed outlier: 4.368A pdb=" N TRP H1445 " --> pdb=" O MET H1487 " (cutoff:3.500A) Processing sheet with id= 76, first strand: chain 'H' and resid 1517 through 1521 removed outlier: 4.322A pdb=" N LEU H1517 " --> pdb=" O VAL H1511 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N TYR H1428 " --> pdb=" O GLY H1508 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N TYR H1426 " --> pdb=" O VAL H1510 " (cutoff:3.500A) removed outlier: 7.066A pdb=" N SER H1429 " --> pdb=" O GLU H1556 " (cutoff:3.500A) removed outlier: 7.935A pdb=" N VAL H1552 " --> pdb=" O PHE H1433 " (cutoff:3.500A) Processing sheet with id= 77, first strand: chain 'H' and resid 4136 through 4140 removed outlier: 3.554A pdb=" N ILE H4137 " --> pdb=" O VAL H4149 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N VAL H4149 " --> pdb=" O ILE H4137 " (cutoff:3.500A) Processing sheet with id= 78, first strand: chain 'H' and resid 4521 through 4524 removed outlier: 3.888A pdb=" N LYS H4522 " --> pdb=" O TYR H4560 " (cutoff:3.500A) removed outlier: 4.709A pdb=" N VAL H4558 " --> pdb=" O SER H4524 " (cutoff:3.500A) Processing sheet with id= 79, first strand: chain 'H' and resid 1441 through 1446 removed outlier: 5.271A pdb=" N TRP H1442 " --> pdb=" O PHE H1544 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N GLY H1444 " --> pdb=" O ALA H1542 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N ALA H1542 " --> pdb=" O GLY H1444 " (cutoff:3.500A) Processing sheet with id= 80, first strand: chain 'K' and resid 47 through 52 removed outlier: 3.501A pdb=" N GLU K 50 " --> pdb=" O CYS K 36 " (cutoff:3.500A) removed outlier: 5.999A pdb=" N LYS K 34 " --> pdb=" O THR K 52 " (cutoff:3.500A) removed outlier: 5.443A pdb=" N LEU K 22 " --> pdb=" O LEU K 37 " (cutoff:3.500A) removed outlier: 10.329A pdb=" N ALA K 39 " --> pdb=" O VAL K 20 " (cutoff:3.500A) removed outlier: 13.271A pdb=" N VAL K 20 " --> pdb=" O ALA K 39 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N ALA K 215 " --> pdb=" O VAL K 21 " (cutoff:3.500A) Processing sheet with id= 81, first strand: chain 'K' and resid 67 through 70 removed outlier: 4.207A pdb=" N GLU K 70 " --> pdb=" O LEU K 120 " (cutoff:3.500A) removed outlier: 6.781A pdb=" N LEU K 120 " --> pdb=" O GLU K 70 " (cutoff:3.500A) Processing sheet with id= 82, first strand: chain 'K' and resid 129 through 132 removed outlier: 3.629A pdb=" N GLY K 148 " --> pdb=" O CYS K 131 " (cutoff:3.500A) Processing sheet with id= 83, first strand: chain 'K' and resid 160 through 165 No H-bonds generated for sheet with id= 83 Processing sheet with id= 84, first strand: chain 'K' and resid 193 through 196 Processing sheet with id= 85, first strand: chain 'K' and resid 243 through 247 removed outlier: 5.895A pdb=" N VAL K 260 " --> pdb=" O ALA K 391 " (cutoff:3.500A) removed outlier: 3.873A pdb=" N ALA K 391 " --> pdb=" O VAL K 260 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N ARG K 389 " --> pdb=" O TYR K 262 " (cutoff:3.500A) removed outlier: 4.610A pdb=" N LYS K 390 " --> pdb=" O GLN K 375 " (cutoff:3.500A) Processing sheet with id= 86, first strand: chain 'K' and resid 295 through 299 removed outlier: 4.545A pdb=" N ASP K 232 " --> pdb=" O LEU K 277 " (cutoff:3.500A) Processing sheet with id= 87, first strand: chain 'K' and resid 304 through 309 No H-bonds generated for sheet with id= 87 Processing sheet with id= 88, first strand: chain 'K' and resid 329 through 332 Processing sheet with id= 89, first strand: chain 'K' and resid 644 through 650 removed outlier: 3.934A pdb=" N GLN K 645 " --> pdb=" O HIS K1631 " (cutoff:3.500A) removed outlier: 4.583A pdb=" N VAL K 649 " --> pdb=" O PHE K1627 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N LEU K1618 " --> pdb=" O GLU K1613 " (cutoff:3.500A) Processing sheet with id= 90, first strand: chain 'K' and resid 652 through 656 removed outlier: 3.671A pdb=" N SER K 653 " --> pdb=" O PHE K 794 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N VAL K 792 " --> pdb=" O MET K 655 " (cutoff:3.500A) removed outlier: 6.671A pdb=" N GLY K 696 " --> pdb=" O VAL K 791 " (cutoff:3.500A) Processing sheet with id= 91, first strand: chain 'K' and resid 766 through 769 removed outlier: 3.597A pdb=" N ARG K 769 " --> pdb=" O SER K 756 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N ASP K 753 " --> pdb=" O VAL K 679 " (cutoff:3.500A) removed outlier: 6.608A pdb=" N LYS K 671 " --> pdb=" O LEU K 761 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N GLU K 676 " --> pdb=" O LEU K 803 " (cutoff:3.500A) removed outlier: 6.388A pdb=" N LYS K 799 " --> pdb=" O ASP K 680 " (cutoff:3.500A) Processing sheet with id= 92, first strand: chain 'K' and resid 776 through 780 No H-bonds generated for sheet with id= 92 Processing sheet with id= 93, first strand: chain 'K' and resid 903 through 906 No H-bonds generated for sheet with id= 93 Processing sheet with id= 94, first strand: chain 'K' and resid 1085 through 1090 removed outlier: 4.830A pdb=" N ARG K1086 " --> pdb=" O LEU K1207 " (cutoff:3.500A) removed outlier: 7.168A pdb=" N ASP K1112 " --> pdb=" O GLY K1208 " (cutoff:3.500A) removed outlier: 7.846A pdb=" N MET K1113 " --> pdb=" O GLY K1139 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N GLY K1139 " --> pdb=" O MET K1113 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N ALA K1136 " --> pdb=" O TRP K1145 " (cutoff:3.500A) removed outlier: 4.858A pdb=" N ALA K1142 " --> pdb=" O TYR K1152 " (cutoff:3.500A) Processing sheet with id= 95, first strand: chain 'K' and resid 1172 through 1177 removed outlier: 4.238A pdb=" N THR K1172 " --> pdb=" O ASP K1167 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N THR K1176 " --> pdb=" O GLY K1163 " (cutoff:3.500A) removed outlier: 4.612A pdb=" N GLY K1163 " --> pdb=" O THR K1176 " (cutoff:3.500A) removed outlier: 5.297A pdb=" N PHE K1105 " --> pdb=" O VAL K1162 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N PHE K1103 " --> pdb=" O CYS K1164 " (cutoff:3.500A) removed outlier: 5.825A pdb=" N GLY K1099 " --> pdb=" O MET K1168 " (cutoff:3.500A) removed outlier: 4.150A pdb=" N GLU K1104 " --> pdb=" O ASN K1216 " (cutoff:3.500A) removed outlier: 3.656A pdb=" N ASN K1216 " --> pdb=" O GLU K1104 " (cutoff:3.500A) removed outlier: 6.553A pdb=" N VAL K1212 " --> pdb=" O VAL K1108 " (cutoff:3.500A) Processing sheet with id= 96, first strand: chain 'K' and resid 1249 through 1252 removed outlier: 6.478A pdb=" N MET K1249 " --> pdb=" O PHE K1603 " (cutoff:3.500A) Processing sheet with id= 97, first strand: chain 'K' and resid 1256 through 1260 Processing sheet with id= 98, first strand: chain 'K' and resid 1268 through 1274 removed outlier: 3.880A pdb=" N GLU K1269 " --> pdb=" O GLY K1291 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N GLY K1291 " --> pdb=" O GLU K1269 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N THR K1271 " --> pdb=" O SER K1289 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N SER K1289 " --> pdb=" O THR K1271 " (cutoff:3.500A) Processing sheet with id= 99, first strand: chain 'K' and resid 1299 through 1304 removed outlier: 5.713A pdb=" N THR K1537 " --> pdb=" O CYS K1310 " (cutoff:3.500A) Processing sheet with id=100, first strand: chain 'K' and resid 1486 through 1490 removed outlier: 3.972A pdb=" N MET K1487 " --> pdb=" O TRP K1445 " (cutoff:3.500A) removed outlier: 4.368A pdb=" N TRP K1445 " --> pdb=" O MET K1487 " (cutoff:3.500A) Processing sheet with id=101, first strand: chain 'K' and resid 1517 through 1521 removed outlier: 4.323A pdb=" N LEU K1517 " --> pdb=" O VAL K1511 " (cutoff:3.500A) removed outlier: 4.182A pdb=" N TYR K1428 " --> pdb=" O GLY K1508 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N TYR K1426 " --> pdb=" O VAL K1510 " (cutoff:3.500A) removed outlier: 7.066A pdb=" N SER K1429 " --> pdb=" O GLU K1556 " (cutoff:3.500A) removed outlier: 7.935A pdb=" N VAL K1552 " --> pdb=" O PHE K1433 " (cutoff:3.500A) Processing sheet with id=102, first strand: chain 'K' and resid 4136 through 4140 removed outlier: 3.554A pdb=" N ILE K4137 " --> pdb=" O VAL K4149 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N VAL K4149 " --> pdb=" O ILE K4137 " (cutoff:3.500A) Processing sheet with id=103, first strand: chain 'K' and resid 4521 through 4524 removed outlier: 3.889A pdb=" N LYS K4522 " --> pdb=" O TYR K4560 " (cutoff:3.500A) removed outlier: 4.710A pdb=" N VAL K4558 " --> pdb=" O SER K4524 " (cutoff:3.500A) Processing sheet with id=104, first strand: chain 'K' and resid 1441 through 1446 removed outlier: 5.270A pdb=" N TRP K1442 " --> pdb=" O PHE K1544 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N GLY K1444 " --> pdb=" O ALA K1542 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N ALA K1542 " --> pdb=" O GLY K1444 " (cutoff:3.500A) 5682 hydrogen bonds defined for protein. 16950 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 0 hydrogen bonds 0 hydrogen bond angles 0 basepair planarities 0 basepair parallelities 0 stacking parallelities Total time for adding SS restraints: 78.31 Time building geometry restraints manager: 39.24 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.18 - 1.31: 19496 1.31 - 1.43: 30510 1.43 - 1.56: 66010 1.56 - 1.69: 20 1.69 - 1.82: 1108 Bond restraints: 117144 Sorted by residual: bond pdb=" C4 ATP H6003 " pdb=" C5 ATP H6003 " ideal model delta sigma weight residual 1.388 1.458 -0.070 1.00e-02 1.00e+04 4.94e+01 bond pdb=" C4 ATP B6003 " pdb=" C5 ATP B6003 " ideal model delta sigma weight residual 1.388 1.458 -0.070 1.00e-02 1.00e+04 4.94e+01 bond pdb=" C4 ATP E6003 " pdb=" C5 ATP E6003 " ideal model delta sigma weight residual 1.388 1.458 -0.070 1.00e-02 1.00e+04 4.94e+01 bond pdb=" C4 ATP K6003 " pdb=" C5 ATP K6003 " ideal model delta sigma weight residual 1.388 1.458 -0.070 1.00e-02 1.00e+04 4.93e+01 bond pdb=" C5 ATP H6003 " pdb=" C6 ATP H6003 " ideal model delta sigma weight residual 1.409 1.462 -0.053 1.00e-02 1.00e+04 2.84e+01 ... (remaining 117139 not shown) Histogram of bond angle deviations from ideal: 96.21 - 104.88: 1888 104.88 - 113.56: 65998 113.56 - 122.23: 70061 122.23 - 130.90: 19813 130.90 - 139.57: 620 Bond angle restraints: 158380 Sorted by residual: angle pdb=" PA ATP B6003 " pdb=" O3A ATP B6003 " pdb=" PB ATP B6003 " ideal model delta sigma weight residual 136.83 121.14 15.69 1.00e+00 1.00e+00 2.46e+02 angle pdb=" PA ATP H6003 " pdb=" O3A ATP H6003 " pdb=" PB ATP H6003 " ideal model delta sigma weight residual 136.83 121.14 15.69 1.00e+00 1.00e+00 2.46e+02 angle pdb=" PA ATP E6003 " pdb=" O3A ATP E6003 " pdb=" PB ATP E6003 " ideal model delta sigma weight residual 136.83 121.14 15.69 1.00e+00 1.00e+00 2.46e+02 angle pdb=" PB ATP K6003 " pdb=" O3B ATP K6003 " pdb=" PG ATP K6003 " ideal model delta sigma weight residual 139.87 124.20 15.67 1.00e+00 1.00e+00 2.46e+02 angle pdb=" PB ATP H6003 " pdb=" O3B ATP H6003 " pdb=" PG ATP H6003 " ideal model delta sigma weight residual 139.87 124.20 15.67 1.00e+00 1.00e+00 2.46e+02 ... (remaining 158375 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 16.52: 65417 16.52 - 33.04: 3670 33.04 - 49.57: 763 49.57 - 66.09: 61 66.09 - 82.61: 87 Dihedral angle restraints: 69998 sinusoidal: 26610 harmonic: 43388 Sorted by residual: dihedral pdb=" CA GLU K1847 " pdb=" C GLU K1847 " pdb=" N PRO K1848 " pdb=" CA PRO K1848 " ideal model delta harmonic sigma weight residual -180.00 -117.96 -62.04 0 5.00e+00 4.00e-02 1.54e+02 dihedral pdb=" CA GLU B1847 " pdb=" C GLU B1847 " pdb=" N PRO B1848 " pdb=" CA PRO B1848 " ideal model delta harmonic sigma weight residual -180.00 -117.96 -62.04 0 5.00e+00 4.00e-02 1.54e+02 dihedral pdb=" CA GLU H1847 " pdb=" C GLU H1847 " pdb=" N PRO H1848 " pdb=" CA PRO H1848 " ideal model delta harmonic sigma weight residual 180.00 -117.97 -62.03 0 5.00e+00 4.00e-02 1.54e+02 ... (remaining 69995 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.058: 13017 0.058 - 0.117: 3840 0.117 - 0.175: 873 0.175 - 0.233: 86 0.233 - 0.292: 28 Chirality restraints: 17844 Sorted by residual: chirality pdb=" CA ASN E4915 " pdb=" N ASN E4915 " pdb=" C ASN E4915 " pdb=" CB ASN E4915 " both_signs ideal model delta sigma weight residual False 2.51 2.22 0.29 2.00e-01 2.50e+01 2.13e+00 chirality pdb=" CA ASN H4915 " pdb=" N ASN H4915 " pdb=" C ASN H4915 " pdb=" CB ASN H4915 " both_signs ideal model delta sigma weight residual False 2.51 2.22 0.29 2.00e-01 2.50e+01 2.12e+00 chirality pdb=" CA ASN K4915 " pdb=" N ASN K4915 " pdb=" C ASN K4915 " pdb=" CB ASN K4915 " both_signs ideal model delta sigma weight residual False 2.51 2.22 0.29 2.00e-01 2.50e+01 2.12e+00 ... (remaining 17841 not shown) Planarity restraints: 20384 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" C PRO K 816 " 0.056 5.00e-02 4.00e+02 8.51e-02 1.16e+01 pdb=" N PRO K 817 " -0.147 5.00e-02 4.00e+02 pdb=" CA PRO K 817 " 0.045 5.00e-02 4.00e+02 pdb=" CD PRO K 817 " 0.046 5.00e-02 4.00e+02 delta sigma weight rms_deltas residual plane pdb=" C PRO E 816 " -0.056 5.00e-02 4.00e+02 8.50e-02 1.15e+01 pdb=" N PRO E 817 " 0.147 5.00e-02 4.00e+02 pdb=" CA PRO E 817 " -0.045 5.00e-02 4.00e+02 pdb=" CD PRO E 817 " -0.046 5.00e-02 4.00e+02 delta sigma weight rms_deltas residual plane pdb=" C PRO B 816 " 0.056 5.00e-02 4.00e+02 8.49e-02 1.15e+01 pdb=" N PRO B 817 " -0.147 5.00e-02 4.00e+02 pdb=" CA PRO B 817 " 0.045 5.00e-02 4.00e+02 pdb=" CD PRO B 817 " 0.046 5.00e-02 4.00e+02 ... (remaining 20381 not shown) Histogram of nonbonded interaction distances: 2.21 - 2.75: 13511 2.75 - 3.28: 113523 3.28 - 3.82: 189911 3.82 - 4.36: 213280 4.36 - 4.90: 354209 Nonbonded interactions: 884434 Sorted by model distance: nonbonded pdb=" OH TYR B 674 " pdb=" OE2 GLU B 676 " model vdw 2.208 2.440 nonbonded pdb=" OH TYR H 674 " pdb=" OE2 GLU H 676 " model vdw 2.208 2.440 nonbonded pdb=" OH TYR K 674 " pdb=" OE2 GLU K 676 " model vdw 2.208 2.440 nonbonded pdb=" OH TYR E 674 " pdb=" OE2 GLU E 676 " model vdw 2.209 2.440 nonbonded pdb=" OH TYR H4722 " pdb=" OD1 ASP H4746 " model vdw 2.229 2.440 ... (remaining 884429 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model Found NCS groups: ncs_group { reference = chain 'A' selection = chain 'D' selection = chain 'G' selection = chain 'J' } ncs_group { reference = chain 'B' selection = chain 'E' selection = chain 'H' selection = chain 'K' } ncs_group { reference = chain 'C' selection = chain 'F' selection = chain 'I' selection = chain 'L' } Set up NCS constraints No NCS constraints will be used in refinement. Set refine NCS operators Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=0.99 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as group one per residue Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 3.760 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.000 Assert all atoms have isotropic ADPs: 0.010 Construct map_model_manager: 0.100 Extract box with map and model: 17.970 Check model and map are aligned: 1.260 Set scattering table: 0.780 Process input model: 302.200 Find NCS groups from input model: 5.420 Set up NCS constraints: 0.740 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.000 Extract rigid body selections: 0.000 Check and reset occupancies: 0.030 Load rotamer database and sin/cos tables:2.400 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 334.670 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7980 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.008 0.089 117144 Z= 0.504 Angle : 1.119 15.694 158380 Z= 0.612 Chirality : 0.058 0.292 17844 Planarity : 0.007 0.085 20384 Dihedral : 11.512 82.610 41838 Min Nonbonded Distance : 2.208 Molprobity Statistics. All-atom Clashscore : 7.63 Ramachandran Plot: Outliers : 0.39 % Allowed : 11.25 % Favored : 88.37 % Rotamer: Outliers : 0.57 % Allowed : 4.04 % Favored : 95.39 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 5.43 % Twisted General : 0.48 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -4.07 (0.06), residues: 14492 helix: -1.98 (0.05), residues: 7224 sheet: -2.95 (0.13), residues: 1288 loop : -3.50 (0.07), residues: 5980 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.035 0.004 TRP H4950 HIS 0.020 0.003 HIS K 270 PHE 0.034 0.003 PHE K 489 TYR 0.038 0.003 TYR B1703 ARG 0.019 0.001 ARG E 739 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 28984 Ramachandran restraints generated. 14492 Oldfield, 0 Emsley, 14492 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 28984 Ramachandran restraints generated. 14492 Oldfield, 0 Emsley, 14492 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 2293 residues out of total 13164 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 74 poor density : 2219 time to evaluate : 9.746 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash Traceback (most recent call last): File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/build/../modules/phenix/phenix/command_line/real_space_refine.py", line 8, in run_program(real_space_refine.Program) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/iotbx/cli_parser.py", line 931, in run_program task.run() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/programs/real_space_refine.py", line 191, in run log = self.logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/rsr/wrappers.py", line 58, in __init__ log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 303, in __init__ self.caller(self.optimize_sidechains) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 321, in caller func() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 609, in optimize_sidechains log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 83, in __init__ rotatable_hd = self.rotatable_hd) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 189, in run_one pdb_hierarchy = self.run_one_one(args=args) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 133, in run_one_one log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 108, in __init__ self.loop(function = self.one_residue_iteration) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 284, in loop function(residue = residue) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 271, in one_residue_iteration log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 172, in __init__ self.fit_proline() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21-5211/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 217, in fit_proline for rotamer, sites_cart in rotamer_iterator: TypeError: 'NoneType' object is not iterable