Starting phenix.real_space_refine on Fri Dec 8 21:14:03 2023 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiu_9836/12_2023/6jiu_9836_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiu_9836/12_2023/6jiu_9836.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=4.2 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiu_9836/12_2023/6jiu_9836.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiu_9836/12_2023/6jiu_9836.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiu_9836/12_2023/6jiu_9836_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiu_9836/12_2023/6jiu_9836_updated.pdb" } resolution = 4.2 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= 0.001 sd= 0.005 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 7 Type Number sf(0) Gaussians Ca 12 9.91 5 Zn 4 6.06 5 P 12 5.49 5 S 664 5.16 5 C 71384 2.51 5 N 19228 2.21 5 O 20908 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "A GLU 19": "OE1" <-> "OE2" Residue "A PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 189": "OE1" <-> "OE2" Residue "A ARG 190": "NH1" <-> "NH2" Residue "A TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 257": "NH1" <-> "NH2" Residue "A TYR 305": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 358": "OD1" <-> "OD2" Residue "A TYR 374": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 414": "NH1" <-> "NH2" Residue "A PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 685": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 711": "OE1" <-> "OE2" Residue "A GLU 712": "OE1" <-> "OE2" Residue "A ASP 785": "OD1" <-> "OD2" Residue "A PHE 788": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 802": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 811": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 843": "OE1" <-> "OE2" Residue "A TYR 846": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 938": "OE1" <-> "OE2" Residue "A ASP 982": "OD1" <-> "OD2" Residue "A PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 1246": "OD1" <-> "OD2" Residue "A GLU 1269": "OE1" <-> "OE2" Residue "A TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 1453": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 1454": "OD1" <-> "OD2" Residue "A GLU 1478": "OE1" <-> "OE2" Residue "A ASP 1640": "OD1" <-> "OD2" Residue "A GLU 1732": "OE1" <-> "OE2" Residue "A PHE 1763": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 1807": "NH1" <-> "NH2" Residue "A PHE 1834": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 1916": "OD1" <-> "OD2" Residue "A PHE 1933": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 1942": "NH1" <-> "NH2" Residue "A GLU 2077": "OE1" <-> "OE2" Residue "A ASP 2078": "OD1" <-> "OD2" Residue "A GLU 2080": "OE1" <-> "OE2" Residue "A GLU 2170": "OE1" <-> "OE2" Residue "A TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 2260": "OE1" <-> "OE2" Residue "A ARG 2323": "NH1" <-> "NH2" Residue "A ARG 2327": "NH1" <-> "NH2" Residue "A PHE 2441": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 2477": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 2519": "NH1" <-> "NH2" Residue "A ASP 2708": "OD1" <-> "OD2" Residue "A GLU 2719": "OE1" <-> "OE2" Residue "A TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 2770": "OE1" <-> "OE2" Residue "A GLU 2791": "OE1" <-> "OE2" Residue "A ASP 2828": "OD1" <-> "OD2" Residue "A TYR 3610": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 3616": "NH1" <-> "NH2" Residue "A PHE 3637": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 3644": "OD1" <-> "OD2" Residue "A GLU 3684": "OE1" <-> "OE2" Residue "A ASP 3686": "OD1" <-> "OD2" Residue "A GLU 3784": "OE1" <-> "OE2" Residue "A ASP 3833": "OD1" <-> "OD2" Residue "A ASP 3877": "OD1" <-> "OD2" Residue "A ASP 3888": "OD1" <-> "OD2" Residue "A GLU 3967": "OE1" <-> "OE2" Residue "A GLU 3971": "OE1" <-> "OE2" Residue "A ASP 3974": "OD1" <-> "OD2" Residue "A ASP 4026": "OD1" <-> "OD2" Residue "A ASP 4039": "OD1" <-> "OD2" Residue "A GLU 4065": "OE1" <-> "OE2" Residue "A GLU 4077": "OE1" <-> "OE2" Residue "A GLU 4108": "OE1" <-> "OE2" Residue "A PHE 4119": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4148": "NH1" <-> "NH2" Residue "A TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4158": "NH1" <-> "NH2" Residue "A ASP 4176": "OD1" <-> "OD2" Residue "A GLU 4183": "OE1" <-> "OE2" Residue "A ARG 4498": "NH1" <-> "NH2" Residue "A ARG 4504": "NH1" <-> "NH2" Residue "A ASP 4626": "OD1" <-> "OD2" Residue "A ARG 4791": "NH1" <-> "NH2" Residue "A ASP 4801": "OD1" <-> "OD2" Residue "A PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4852": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 13": "NH1" <-> "NH2" Residue "B TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 46": "OE1" <-> "OE2" Residue "C ASP 51": "OD1" <-> "OD2" Residue "D GLU 19": "OE1" <-> "OE2" Residue "D PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 189": "OE1" <-> "OE2" Residue "D ARG 190": "NH1" <-> "NH2" Residue "D TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 257": "NH1" <-> "NH2" Residue "D TYR 305": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 358": "OD1" <-> "OD2" Residue "D TYR 374": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 414": "NH1" <-> "NH2" Residue "D PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 685": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 711": "OE1" <-> "OE2" Residue "D GLU 712": "OE1" <-> "OE2" Residue "D ASP 785": "OD1" <-> "OD2" Residue "D PHE 788": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 802": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 811": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 843": "OE1" <-> "OE2" Residue "D TYR 846": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 938": "OE1" <-> "OE2" Residue "D ASP 982": "OD1" <-> "OD2" Residue "D PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 1246": "OD1" <-> "OD2" Residue "D GLU 1269": "OE1" <-> "OE2" Residue "D TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 1453": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 1454": "OD1" <-> "OD2" Residue "D GLU 1478": "OE1" <-> "OE2" Residue "D ASP 1640": "OD1" <-> "OD2" Residue "D GLU 1732": "OE1" <-> "OE2" Residue "D PHE 1763": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 1807": "NH1" <-> "NH2" Residue "D PHE 1834": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 1916": "OD1" <-> "OD2" Residue "D PHE 1933": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 1942": "NH1" <-> "NH2" Residue "D GLU 2077": "OE1" <-> "OE2" Residue "D ASP 2078": "OD1" <-> "OD2" Residue "D GLU 2080": "OE1" <-> "OE2" Residue "D GLU 2170": "OE1" <-> "OE2" Residue "D TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 2260": "OE1" <-> "OE2" Residue "D ARG 2323": "NH1" <-> "NH2" Residue "D ARG 2327": "NH1" <-> "NH2" Residue "D PHE 2441": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 2477": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 2519": "NH1" <-> "NH2" Residue "D ASP 2708": "OD1" <-> "OD2" Residue "D GLU 2719": "OE1" <-> "OE2" Residue "D TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 2770": "OE1" <-> "OE2" Residue "D GLU 2791": "OE1" <-> "OE2" Residue "D ASP 2828": "OD1" <-> "OD2" Residue "D TYR 3610": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 3616": "NH1" <-> "NH2" Residue "D PHE 3637": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 3644": "OD1" <-> "OD2" Residue "D GLU 3684": "OE1" <-> "OE2" Residue "D ASP 3686": "OD1" <-> "OD2" Residue "D GLU 3784": "OE1" <-> "OE2" Residue "D ASP 3833": "OD1" <-> "OD2" Residue "D ASP 3877": "OD1" <-> "OD2" Residue "D ASP 3888": "OD1" <-> "OD2" Residue "D GLU 3967": "OE1" <-> "OE2" Residue "D GLU 3971": "OE1" <-> "OE2" Residue "D ASP 3974": "OD1" <-> "OD2" Residue "D ASP 4026": "OD1" <-> "OD2" Residue "D ASP 4039": "OD1" <-> "OD2" Residue "D GLU 4065": "OE1" <-> "OE2" Residue "D GLU 4077": "OE1" <-> "OE2" Residue "D GLU 4108": "OE1" <-> "OE2" Residue "D PHE 4119": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 4148": "NH1" <-> "NH2" Residue "D TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 4158": "NH1" <-> "NH2" Residue "D ASP 4176": "OD1" <-> "OD2" Residue "D GLU 4183": "OE1" <-> "OE2" Residue "D ARG 4498": "NH1" <-> "NH2" Residue "D ARG 4504": "NH1" <-> "NH2" Residue "D ASP 4626": "OD1" <-> "OD2" Residue "D ARG 4791": "NH1" <-> "NH2" Residue "D ASP 4801": "OD1" <-> "OD2" Residue "D PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 13": "NH1" <-> "NH2" Residue "E TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F GLU 46": "OE1" <-> "OE2" Residue "F ASP 51": "OD1" <-> "OD2" Residue "G GLU 19": "OE1" <-> "OE2" Residue "G PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 189": "OE1" <-> "OE2" Residue "G ARG 190": "NH1" <-> "NH2" Residue "G TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 257": "NH1" <-> "NH2" Residue "G TYR 305": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 358": "OD1" <-> "OD2" Residue "G TYR 374": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 414": "NH1" <-> "NH2" Residue "G PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 685": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 711": "OE1" <-> "OE2" Residue "G GLU 712": "OE1" <-> "OE2" Residue "G ASP 785": "OD1" <-> "OD2" Residue "G PHE 788": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 802": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 811": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 843": "OE1" <-> "OE2" Residue "G TYR 846": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 938": "OE1" <-> "OE2" Residue "G ASP 982": "OD1" <-> "OD2" Residue "G PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 1246": "OD1" <-> "OD2" Residue "G GLU 1269": "OE1" <-> "OE2" Residue "G TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 1453": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 1454": "OD1" <-> "OD2" Residue "G GLU 1478": "OE1" <-> "OE2" Residue "G ASP 1640": "OD1" <-> "OD2" Residue "G GLU 1732": "OE1" <-> "OE2" Residue "G PHE 1763": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 1807": "NH1" <-> "NH2" Residue "G PHE 1834": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 1916": "OD1" <-> "OD2" Residue "G PHE 1933": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 1942": "NH1" <-> "NH2" Residue "G GLU 2077": "OE1" <-> "OE2" Residue "G ASP 2078": "OD1" <-> "OD2" Residue "G GLU 2080": "OE1" <-> "OE2" Residue "G GLU 2170": "OE1" <-> "OE2" Residue "G TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 2260": "OE1" <-> "OE2" Residue "G ARG 2323": "NH1" <-> "NH2" Residue "G ARG 2327": "NH1" <-> "NH2" Residue "G PHE 2441": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 2477": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 2519": "NH1" <-> "NH2" Residue "G ASP 2708": "OD1" <-> "OD2" Residue "G GLU 2719": "OE1" <-> "OE2" Residue "G TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 2770": "OE1" <-> "OE2" Residue "G GLU 2791": "OE1" <-> "OE2" Residue "G ASP 2828": "OD1" <-> "OD2" Residue "G TYR 3610": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 3616": "NH1" <-> "NH2" Residue "G PHE 3637": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 3644": "OD1" <-> "OD2" Residue "G GLU 3684": "OE1" <-> "OE2" Residue "G ASP 3686": "OD1" <-> "OD2" Residue "G GLU 3784": "OE1" <-> "OE2" Residue "G ASP 3833": "OD1" <-> "OD2" Residue "G ASP 3877": "OD1" <-> "OD2" Residue "G ASP 3888": "OD1" <-> "OD2" Residue "G GLU 3967": "OE1" <-> "OE2" Residue "G GLU 3971": "OE1" <-> "OE2" Residue "G ASP 3974": "OD1" <-> "OD2" Residue "G ASP 4026": "OD1" <-> "OD2" Residue "G ASP 4039": "OD1" <-> "OD2" Residue "G GLU 4065": "OE1" <-> "OE2" Residue "G GLU 4077": "OE1" <-> "OE2" Residue "G GLU 4108": "OE1" <-> "OE2" Residue "G PHE 4119": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4148": "NH1" <-> "NH2" Residue "G TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4158": "NH1" <-> "NH2" Residue "G ASP 4176": "OD1" <-> "OD2" Residue "G GLU 4183": "OE1" <-> "OE2" Residue "G ARG 4498": "NH1" <-> "NH2" Residue "G ARG 4504": "NH1" <-> "NH2" Residue "G ASP 4626": "OD1" <-> "OD2" Residue "G ARG 4791": "NH1" <-> "NH2" Residue "G ASP 4801": "OD1" <-> "OD2" Residue "G TYR 4819": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 13": "NH1" <-> "NH2" Residue "H TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "I GLU 46": "OE1" <-> "OE2" Residue "I ASP 51": "OD1" <-> "OD2" Residue "J GLU 19": "OE1" <-> "OE2" Residue "J PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 189": "OE1" <-> "OE2" Residue "J ARG 190": "NH1" <-> "NH2" Residue "J TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 257": "NH1" <-> "NH2" Residue "J TYR 305": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 358": "OD1" <-> "OD2" Residue "J TYR 374": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 414": "NH1" <-> "NH2" Residue "J PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 685": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 711": "OE1" <-> "OE2" Residue "J GLU 712": "OE1" <-> "OE2" Residue "J ASP 785": "OD1" <-> "OD2" Residue "J PHE 788": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 802": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 811": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 843": "OE1" <-> "OE2" Residue "J TYR 846": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 938": "OE1" <-> "OE2" Residue "J ASP 982": "OD1" <-> "OD2" Residue "J PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 1246": "OD1" <-> "OD2" Residue "J GLU 1269": "OE1" <-> "OE2" Residue "J TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 1453": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 1454": "OD1" <-> "OD2" Residue "J GLU 1478": "OE1" <-> "OE2" Residue "J ASP 1640": "OD1" <-> "OD2" Residue "J GLU 1732": "OE1" <-> "OE2" Residue "J PHE 1763": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 1807": "NH1" <-> "NH2" Residue "J PHE 1834": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 1916": "OD1" <-> "OD2" Residue "J PHE 1933": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 1942": "NH1" <-> "NH2" Residue "J GLU 2077": "OE1" <-> "OE2" Residue "J ASP 2078": "OD1" <-> "OD2" Residue "J GLU 2080": "OE1" <-> "OE2" Residue "J GLU 2170": "OE1" <-> "OE2" Residue "J TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 2260": "OE1" <-> "OE2" Residue "J ARG 2323": "NH1" <-> "NH2" Residue "J ARG 2327": "NH1" <-> "NH2" Residue "J PHE 2441": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 2477": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 2519": "NH1" <-> "NH2" Residue "J ASP 2708": "OD1" <-> "OD2" Residue "J GLU 2719": "OE1" <-> "OE2" Residue "J TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 2770": "OE1" <-> "OE2" Residue "J GLU 2791": "OE1" <-> "OE2" Residue "J ASP 2828": "OD1" <-> "OD2" Residue "J TYR 3610": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 3616": "NH1" <-> "NH2" Residue "J PHE 3637": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 3644": "OD1" <-> "OD2" Residue "J GLU 3684": "OE1" <-> "OE2" Residue "J ASP 3686": "OD1" <-> "OD2" Residue "J GLU 3784": "OE1" <-> "OE2" Residue "J ASP 3833": "OD1" <-> "OD2" Residue "J ASP 3877": "OD1" <-> "OD2" Residue "J ASP 3888": "OD1" <-> "OD2" Residue "J GLU 3967": "OE1" <-> "OE2" Residue "J GLU 3971": "OE1" <-> "OE2" Residue "J ASP 3974": "OD1" <-> "OD2" Residue "J ASP 4026": "OD1" <-> "OD2" Residue "J ASP 4039": "OD1" <-> "OD2" Residue "J GLU 4065": "OE1" <-> "OE2" Residue "J GLU 4077": "OE1" <-> "OE2" Residue "J GLU 4108": "OE1" <-> "OE2" Residue "J PHE 4119": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 4148": "NH1" <-> "NH2" Residue "J TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 4158": "NH1" <-> "NH2" Residue "J ASP 4176": "OD1" <-> "OD2" Residue "J GLU 4183": "OE1" <-> "OE2" Residue "J ARG 4498": "NH1" <-> "NH2" Residue "J ARG 4504": "NH1" <-> "NH2" Residue "J ASP 4626": "OD1" <-> "OD2" Residue "J ARG 4791": "NH1" <-> "NH2" Residue "J ASP 4801": "OD1" <-> "OD2" Residue "J PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K ARG 13": "NH1" <-> "NH2" Residue "K TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "L GLU 46": "OE1" <-> "OE2" Residue "L ASP 51": "OD1" <-> "OD2" Time to flip residues: 0.26s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/chem_data/mon_lib" Total number of atoms: 112212 Number of models: 1 Model: "" Number of chains: 20 Chain: "A" Number of atoms: 26661 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3496, 26661 Classifications: {'peptide': 3496} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 362} Link IDs: {'PTRANS': 121, 'TRANS': 3374} Chain breaks: 60 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1474 Unresolved non-hydrogen angles: 1876 Unresolved non-hydrogen dihedrals: 1220 Unresolved non-hydrogen chiralities: 129 Planarities with less than four sites: {'GLN:plan1': 19, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 26, 'PHE:plan': 19, 'GLU:plan': 36, 'ARG:plan': 29} Unresolved non-hydrogen planarities: 809 Chain: "B" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "C" Number of atoms: 524 Number of conformers: 1 Conformer: "" Number of residues, atoms: 68, 524 Classifications: {'peptide': 68} Link IDs: {'PTRANS': 2, 'TRANS': 65} Chain: "D" Number of atoms: 26661 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3496, 26661 Classifications: {'peptide': 3496} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 362} Link IDs: {'PTRANS': 121, 'TRANS': 3374} Chain breaks: 60 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1474 Unresolved non-hydrogen angles: 1876 Unresolved non-hydrogen dihedrals: 1221 Unresolved non-hydrogen chiralities: 129 Planarities with less than four sites: {'GLN:plan1': 19, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 26, 'PHE:plan': 19, 'GLU:plan': 36, 'ARG:plan': 29} Unresolved non-hydrogen planarities: 809 Chain: "E" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "F" Number of atoms: 524 Number of conformers: 1 Conformer: "" Number of residues, atoms: 68, 524 Classifications: {'peptide': 68} Link IDs: {'PTRANS': 2, 'TRANS': 65} Chain: "G" Number of atoms: 26661 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3496, 26661 Classifications: {'peptide': 3496} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 362} Link IDs: {'PTRANS': 121, 'TRANS': 3374} Chain breaks: 60 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1474 Unresolved non-hydrogen angles: 1876 Unresolved non-hydrogen dihedrals: 1221 Unresolved non-hydrogen chiralities: 129 Planarities with less than four sites: {'GLN:plan1': 19, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 26, 'PHE:plan': 19, 'GLU:plan': 36, 'ARG:plan': 29} Unresolved non-hydrogen planarities: 809 Chain: "H" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "I" Number of atoms: 524 Number of conformers: 1 Conformer: "" Number of residues, atoms: 68, 524 Classifications: {'peptide': 68} Link IDs: {'PTRANS': 2, 'TRANS': 65} Chain: "J" Number of atoms: 26661 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3496, 26661 Classifications: {'peptide': 3496} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 362} Link IDs: {'PTRANS': 121, 'TRANS': 3374} Chain breaks: 60 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1474 Unresolved non-hydrogen angles: 1876 Unresolved non-hydrogen dihedrals: 1221 Unresolved non-hydrogen chiralities: 129 Planarities with less than four sites: {'GLN:plan1': 19, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 26, 'PHE:plan': 19, 'GLU:plan': 36, 'ARG:plan': 29} Unresolved non-hydrogen planarities: 809 Chain: "K" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "L" Number of atoms: 524 Number of conformers: 1 Conformer: "" Number of residues, atoms: 68, 524 Classifications: {'peptide': 68} Link IDs: {'PTRANS': 2, 'TRANS': 65} Chain: "A" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "C" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' CA': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "D" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "F" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' CA': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "G" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "I" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' CA': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "J" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "L" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' CA': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} List of CYS excluded from plausible disulfide bonds: (reason: may participate in coordination) ATOM 26024 SG CYS A4889 205.513 204.740 83.016 1.00149.64 S ATOM 26049 SG CYS A4892 204.509 202.425 86.151 1.00140.26 S ATOM 54028 SG CYS D4889 204.741 174.476 83.026 1.00149.64 S ATOM 54053 SG CYS D4892 202.427 175.480 86.161 1.00140.26 S ATOM 82032 SG CYS G4889 174.471 175.259 83.028 1.00149.64 S ATOM 82057 SG CYS G4892 175.475 177.574 86.163 1.00140.26 S ATOM A07QS SG CYS J4889 175.262 205.535 83.028 1.00149.64 S ATOM A07RH SG CYS J4892 177.577 204.531 86.163 1.00140.26 S Residues with excluded nonbonded symmetry interactions: 4 residue: pdb=" N HIS B 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS B 87 " occ=0.99 residue: pdb=" N HIS E 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS E 87 " occ=0.99 residue: pdb=" N HIS H 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS H 87 " occ=0.99 residue: pdb=" N HIS K 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS K 87 " occ=0.99 Time building chain proxies: 41.23, per 1000 atoms: 0.37 Number of scatterers: 112212 At special positions: 0 Unit cell: (381.33, 381.33, 206.052, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 7 Type Number sf(0) Zn 4 29.99 Ca 12 19.99 S 664 16.00 P 12 15.00 O 20908 8.00 N 19228 7.00 C 71384 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=0, symmetry=0 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=0, symmetry=0 Time building additional restraints: 30.85 Conformation dependent library (CDL) restraints added in 14.2 seconds Dynamic metal coordination Zn2+ tetrahedral coordination pdb=" ZN A6000 " pdb="ZN ZN A6000 " - pdb=" NE2 HIS A4914 " pdb="ZN ZN A6000 " - pdb=" SG CYS A4892 " pdb="ZN ZN A6000 " - pdb=" SG CYS A4889 " pdb=" ZN D6000 " pdb="ZN ZN D6000 " - pdb=" NE2 HIS D4914 " pdb="ZN ZN D6000 " - pdb=" SG CYS D4892 " pdb="ZN ZN D6000 " - pdb=" SG CYS D4889 " pdb=" ZN G6000 " pdb="ZN ZN G6000 " - pdb=" NE2 HIS G4914 " pdb="ZN ZN G6000 " - pdb=" SG CYS G4892 " pdb="ZN ZN G6000 " - pdb=" SG CYS G4889 " pdb=" ZN J6000 " pdb="ZN ZN J6000 " - pdb=" NE2 HIS J4914 " pdb="ZN ZN J6000 " - pdb=" SG CYS J4892 " pdb="ZN ZN J6000 " - pdb=" SG CYS J4889 " 28360 Ramachandran restraints generated. 14180 Oldfield, 0 Emsley, 14180 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 27528 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 596 helices and 80 sheets defined 59.5% alpha, 8.5% beta 0 base pairs and 0 stacking pairs defined. Time for finding SS restraints: 27.15 Creating SS restraints... Processing helix chain 'A' and resid 61 through 66 removed outlier: 5.430A pdb=" N CYS A 65 " --> pdb=" O ASP A 61 " (cutoff:3.500A) Processing helix chain 'A' and resid 74 through 84 removed outlier: 4.119A pdb=" N ASN A 84 " --> pdb=" O GLU A 80 " (cutoff:3.500A) Processing helix chain 'A' and resid 155 through 160 removed outlier: 4.753A pdb=" N TRP A 159 " --> pdb=" O GLY A 155 " (cutoff:3.500A) removed outlier: 5.632A pdb=" N TRP A 160 " --> pdb=" O GLU A 156 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 155 through 160' Processing helix chain 'A' and resid 265 through 271 removed outlier: 4.323A pdb=" N VAL A 269 " --> pdb=" O GLY A 265 " (cutoff:3.500A) removed outlier: 4.548A pdb=" N ALA A 271 " --> pdb=" O VAL A 267 " (cutoff:3.500A) Processing helix chain 'A' and resid 318 through 323 removed outlier: 3.682A pdb=" N ALA A 322 " --> pdb=" O ASP A 318 " (cutoff:3.500A) removed outlier: 4.831A pdb=" N ASP A 323 " --> pdb=" O LYS A 319 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 318 through 323' Processing helix chain 'A' and resid 409 through 438 removed outlier: 3.654A pdb=" N ARG A 420 " --> pdb=" O ALA A 416 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N SER A 421 " --> pdb=" O ARG A 417 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N PHE A 424 " --> pdb=" O ARG A 420 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N LEU A 425 " --> pdb=" O SER A 421 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N PHE A 426 " --> pdb=" O THR A 422 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N ARG A 428 " --> pdb=" O PHE A 424 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LYS A 438 " --> pdb=" O ASP A 434 " (cutoff:3.500A) Processing helix chain 'A' and resid 448 through 464 removed outlier: 5.158A pdb=" N VAL A 452 " --> pdb=" O PRO A 448 " (cutoff:3.500A) Processing helix chain 'A' and resid 471 through 493 removed outlier: 3.564A pdb=" N ASN A 477 " --> pdb=" O GLU A 473 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N PHE A 489 " --> pdb=" O ARG A 485 " (cutoff:3.500A) Processing helix chain 'A' and resid 494 through 507 removed outlier: 4.453A pdb=" N VAL A 507 " --> pdb=" O ASP A 503 " (cutoff:3.500A) Processing helix chain 'A' and resid 519 through 545 removed outlier: 4.145A pdb=" N GLY A 523 " --> pdb=" O GLY A 519 " (cutoff:3.500A) removed outlier: 5.788A pdb=" N SER A 525 " --> pdb=" O GLU A 521 " (cutoff:3.500A) removed outlier: 6.317A pdb=" N TRP A 526 " --> pdb=" O ALA A 522 " (cutoff:3.500A) removed outlier: 6.171A pdb=" N LYS A 527 " --> pdb=" O GLY A 523 " (cutoff:3.500A) removed outlier: 5.854A pdb=" N SER A 528 " --> pdb=" O GLU A 524 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N LEU A 530 " --> pdb=" O TRP A 526 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N ILE A 541 " --> pdb=" O LEU A 537 " (cutoff:3.500A) removed outlier: 4.225A pdb=" N ARG A 542 " --> pdb=" O ALA A 538 " (cutoff:3.500A) removed outlier: 4.434A pdb=" N GLY A 543 " --> pdb=" O ALA A 539 " (cutoff:3.500A) removed outlier: 5.333A pdb=" N ASN A 544 " --> pdb=" O LEU A 540 " (cutoff:3.500A) removed outlier: 5.511A pdb=" N ARG A 545 " --> pdb=" O ILE A 541 " (cutoff:3.500A) Processing helix chain 'A' and resid 546 through 552 removed outlier: 4.848A pdb=" N SER A 552 " --> pdb=" O CYS A 548 " (cutoff:3.500A) Processing helix chain 'A' and resid 553 through 563 removed outlier: 3.824A pdb=" N TRP A 557 " --> pdb=" O GLY A 553 " (cutoff:3.500A) removed outlier: 3.981A pdb=" N GLU A 563 " --> pdb=" O ILE A 559 " (cutoff:3.500A) Processing helix chain 'A' and resid 564 through 582 removed outlier: 6.757A pdb=" N SER A 568 " --> pdb=" O ARG A 564 " (cutoff:3.500A) removed outlier: 7.751A pdb=" N SER A 569 " --> pdb=" O LEU A 565 " (cutoff:3.500A) removed outlier: 7.035A pdb=" N GLY A 570 " --> pdb=" O GLU A 566 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ILE A 571 " --> pdb=" O ALA A 567 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N VAL A 574 " --> pdb=" O GLY A 570 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N LEU A 579 " --> pdb=" O LEU A 575 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N VAL A 580 " --> pdb=" O HIS A 576 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N GLU A 581 " --> pdb=" O CYS A 577 " (cutoff:3.500A) Processing helix chain 'A' and resid 583 through 590 removed outlier: 3.985A pdb=" N ASN A 587 " --> pdb=" O PRO A 583 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ILE A 588 " --> pdb=" O GLU A 584 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N ILE A 589 " --> pdb=" O ALA A 585 " (cutoff:3.500A) removed outlier: 5.757A pdb=" N LYS A 590 " --> pdb=" O LEU A 586 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 583 through 590' Processing helix chain 'A' and resid 591 through 605 removed outlier: 3.630A pdb=" N SER A 596 " --> pdb=" O GLY A 592 " (cutoff:3.500A) Processing helix chain 'A' and resid 607 through 620 removed outlier: 3.752A pdb=" N VAL A 613 " --> pdb=" O LYS A 609 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N LEU A 614 " --> pdb=" O VAL A 610 " (cutoff:3.500A) removed outlier: 4.707A pdb=" N CYS A 620 " --> pdb=" O SER A 616 " (cutoff:3.500A) Processing helix chain 'A' and resid 625 through 636 removed outlier: 3.731A pdb=" N GLN A 629 " --> pdb=" O VAL A 625 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N CYS A 633 " --> pdb=" O GLN A 629 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N ASP A 634 " --> pdb=" O HIS A 630 " (cutoff:3.500A) Processing helix chain 'A' and resid 821 through 827 removed outlier: 4.813A pdb=" N ALA A 825 " --> pdb=" O PRO A 821 " (cutoff:3.500A) removed outlier: 4.852A pdb=" N VAL A 826 " --> pdb=" O CYS A 822 " (cutoff:3.500A) removed outlier: 5.239A pdb=" N LEU A 827 " --> pdb=" O TYR A 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 821 through 827' Processing helix chain 'A' and resid 875 through 901 removed outlier: 3.730A pdb=" N ARG A 880 " --> pdb=" O PRO A 876 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N LEU A 892 " --> pdb=" O ASN A 888 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N LYS A 897 " --> pdb=" O TRP A 893 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N LEU A 900 " --> pdb=" O ASN A 896 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLY A 901 " --> pdb=" O LYS A 897 " (cutoff:3.500A) Processing helix chain 'A' and resid 920 through 925 Proline residue: A 925 - end of helix Processing helix chain 'A' and resid 929 through 946 removed outlier: 3.511A pdb=" N MET A 935 " --> pdb=" O TYR A 931 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N SER A 936 " --> pdb=" O ASN A 932 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N LEU A 940 " --> pdb=" O SER A 936 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N THR A 942 " --> pdb=" O GLU A 938 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N LEU A 944 " --> pdb=" O LEU A 940 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N ALA A 945 " --> pdb=" O LYS A 941 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N LEU A 946 " --> pdb=" O THR A 942 " (cutoff:3.500A) Processing helix chain 'A' and resid 989 through 1012 removed outlier: 3.999A pdb=" N GLU A 993 " --> pdb=" O THR A 989 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N LEU A 999 " --> pdb=" O MET A 995 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N ALA A1000 " --> pdb=" O VAL A 996 " (cutoff:3.500A) Processing helix chain 'A' and resid 1039 through 1061 removed outlier: 4.750A pdb=" N LYS A1043 " --> pdb=" O ASP A1039 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N LYS A1044 " --> pdb=" O ASP A1040 " (cutoff:3.500A) removed outlier: 4.997A pdb=" N SER A1045 " --> pdb=" O ARG A1041 " (cutoff:3.500A) removed outlier: 5.436A pdb=" N ASN A1046 " --> pdb=" O THR A1042 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER A1049 " --> pdb=" O SER A1045 " (cutoff:3.500A) Processing helix chain 'A' and resid 1220 through 1225 removed outlier: 5.648A pdb=" N LYS A1225 " --> pdb=" O VAL A1221 " (cutoff:3.500A) Processing helix chain 'A' and resid 1230 through 1235 removed outlier: 6.809A pdb=" N GLU A1234 " --> pdb=" O CYS A1230 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N GLY A1235 " --> pdb=" O GLY A1231 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1230 through 1235' Processing helix chain 'A' and resid 1570 through 1576 removed outlier: 4.320A pdb=" N GLU A1574 " --> pdb=" O LEU A1570 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N HIS A1575 " --> pdb=" O PHE A1571 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N LYS A1576 " --> pdb=" O LYS A1572 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1570 through 1576' Processing helix chain 'A' and resid 1640 through 1648 removed outlier: 3.694A pdb=" N LEU A1644 " --> pdb=" O ASP A1640 " (cutoff:3.500A) removed outlier: 4.555A pdb=" N THR A1645 " --> pdb=" O ILE A1641 " (cutoff:3.500A) removed outlier: 5.848A pdb=" N GLU A1646 " --> pdb=" O LEU A1642 " (cutoff:3.500A) removed outlier: 4.119A pdb=" N GLN A1647 " --> pdb=" O GLU A1643 " (cutoff:3.500A) removed outlier: 4.393A pdb=" N GLU A1648 " --> pdb=" O LEU A1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1640 through 1648' Processing helix chain 'A' and resid 1649 through 1666 removed outlier: 3.737A pdb=" N CYS A1665 " --> pdb=" O TYR A1661 " (cutoff:3.500A) removed outlier: 4.578A pdb=" N ALA A1666 " --> pdb=" O SER A1662 " (cutoff:3.500A) Processing helix chain 'A' and resid 1669 through 1681 removed outlier: 3.581A pdb=" N CYS A1677 " --> pdb=" O ALA A1673 " (cutoff:3.500A) removed outlier: 4.437A pdb=" N SER A1678 " --> pdb=" O HIS A1674 " (cutoff:3.500A) removed outlier: 4.450A pdb=" N HIS A1679 " --> pdb=" O ALA A1675 " (cutoff:3.500A) Processing helix chain 'A' and resid 1682 through 1691 removed outlier: 3.610A pdb=" N ASN A1691 " --> pdb=" O TYR A1687 " (cutoff:3.500A) Processing helix chain 'A' and resid 1695 through 1710 Processing helix chain 'A' and resid 1711 through 1723 removed outlier: 3.549A pdb=" N ALA A1717 " --> pdb=" O SER A1713 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N MET A1721 " --> pdb=" O ALA A1717 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N ASN A1722 " --> pdb=" O ARG A1718 " (cutoff:3.500A) removed outlier: 5.342A pdb=" N ASN A1723 " --> pdb=" O LEU A1719 " (cutoff:3.500A) Processing helix chain 'A' and resid 1730 through 1736 removed outlier: 3.501A pdb=" N ILE A1736 " --> pdb=" O GLU A1732 " (cutoff:3.500A) Processing helix chain 'A' and resid 1771 through 1776 removed outlier: 4.275A pdb=" N TYR A1776 " --> pdb=" O ASN A1772 " (cutoff:3.500A) Processing helix chain 'A' and resid 1783 through 1802 removed outlier: 3.550A pdb=" N ALA A1789 " --> pdb=" O ASP A1785 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLU A1797 " --> pdb=" O GLN A1793 " (cutoff:3.500A) Processing helix chain 'A' and resid 1813 through 1832 removed outlier: 3.704A pdb=" N LEU A1817 " --> pdb=" O THR A1813 " (cutoff:3.500A) Proline residue: A1820 - end of helix removed outlier: 4.384A pdb=" N GLY A1832 " --> pdb=" O LEU A1828 " (cutoff:3.500A) Processing helix chain 'A' and resid 1835 through 1847 Processing helix chain 'A' and resid 1893 through 1898 removed outlier: 3.664A pdb=" N MET A1897 " --> pdb=" O GLY A1893 " (cutoff:3.500A) removed outlier: 5.588A pdb=" N LYS A1898 " --> pdb=" O LEU A1894 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1893 through 1898' Processing helix chain 'A' and resid 1900 through 1938 removed outlier: 4.179A pdb=" N LYS A1904 " --> pdb=" O PRO A1900 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N LEU A1905 " --> pdb=" O GLU A1901 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N TYR A1913 " --> pdb=" O LEU A1909 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N LEU A1914 " --> pdb=" O LEU A1910 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N ALA A1928 " --> pdb=" O GLU A1924 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N PHE A1929 " --> pdb=" O ALA A1925 " (cutoff:3.500A) removed outlier: 3.882A pdb=" N ASP A1932 " --> pdb=" O ALA A1928 " (cutoff:3.500A) Processing helix chain 'A' and resid 1940 through 1953 removed outlier: 3.529A pdb=" N ARG A1944 " --> pdb=" O ASN A1940 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N VAL A1948 " --> pdb=" O ARG A1944 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N MET A1949 " --> pdb=" O TYR A1945 " (cutoff:3.500A) removed outlier: 4.186A pdb=" N ASN A1953 " --> pdb=" O MET A1949 " (cutoff:3.500A) Processing helix chain 'A' and resid 1990 through 1997 removed outlier: 6.024A pdb=" N ARG A1994 " --> pdb=" O PRO A1990 " (cutoff:3.500A) removed outlier: 4.512A pdb=" N GLN A1996 " --> pdb=" O GLU A1992 " (cutoff:3.500A) Processing helix chain 'A' and resid 1999 through 2012 removed outlier: 4.130A pdb=" N ILE A2010 " --> pdb=" O THR A2006 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N GLU A2011 " --> pdb=" O HIS A2007 " (cutoff:3.500A) removed outlier: 4.843A pdb=" N LEU A2012 " --> pdb=" O CYS A2008 " (cutoff:3.500A) Processing helix chain 'A' and resid 2026 through 2038 removed outlier: 3.859A pdb=" N LEU A2030 " --> pdb=" O ILE A2026 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N GLU A2035 " --> pdb=" O LEU A2031 " (cutoff:3.500A) Processing helix chain 'A' and resid 2058 through 2074 removed outlier: 4.174A pdb=" N LEU A2062 " --> pdb=" O THR A2058 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N SER A2064 " --> pdb=" O GLN A2060 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N MET A2067 " --> pdb=" O ILE A2063 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N VAL A2068 " --> pdb=" O SER A2064 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N SER A2074 " --> pdb=" O TRP A2070 " (cutoff:3.500A) Processing helix chain 'A' and resid 2078 through 2095 removed outlier: 3.523A pdb=" N VAL A2082 " --> pdb=" O ASP A2078 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N VAL A2087 " --> pdb=" O ARG A2083 " (cutoff:3.500A) removed outlier: 3.999A pdb=" N LEU A2088 " --> pdb=" O ALA A2084 " (cutoff:3.500A) Processing helix chain 'A' and resid 2096 through 2106 removed outlier: 3.502A pdb=" N ARG A2101 " --> pdb=" O GLY A2097 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N ALA A2102 " --> pdb=" O GLY A2098 " (cutoff:3.500A) removed outlier: 3.739A pdb=" N LEU A2103 " --> pdb=" O LEU A2099 " (cutoff:3.500A) Proline residue: A2104 - end of helix Processing helix chain 'A' and resid 2110 through 2132 removed outlier: 3.541A pdb=" N VAL A2114 " --> pdb=" O ASN A2110 " (cutoff:3.500A) removed outlier: 4.865A pdb=" N GLU A2115 " --> pdb=" O GLY A2111 " (cutoff:3.500A) removed outlier: 4.975A pdb=" N ASP A2116 " --> pdb=" O VAL A2112 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N ILE A2118 " --> pdb=" O VAL A2114 " (cutoff:3.500A) removed outlier: 4.103A pdb=" N ASN A2119 " --> pdb=" O GLU A2115 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N LEU A2120 " --> pdb=" O ASP A2116 " (cutoff:3.500A) removed outlier: 4.719A pdb=" N SER A2132 " --> pdb=" O ARG A2128 " (cutoff:3.500A) Processing helix chain 'A' and resid 2140 through 2153 removed outlier: 3.662A pdb=" N ARG A2145 " --> pdb=" O LYS A2141 " (cutoff:3.500A) Processing helix chain 'A' and resid 2154 through 2160 removed outlier: 4.548A pdb=" N GLN A2158 " --> pdb=" O LYS A2154 " (cutoff:3.500A) removed outlier: 5.872A pdb=" N HIS A2159 " --> pdb=" O VAL A2155 " (cutoff:3.500A) Proline residue: A2160 - end of helix No H-bonds generated for 'chain 'A' and resid 2154 through 2160' Processing helix chain 'A' and resid 2161 through 2167 Processing helix chain 'A' and resid 2168 through 2181 removed outlier: 4.619A pdb=" N GLY A2181 " --> pdb=" O VAL A2177 " (cutoff:3.500A) Processing helix chain 'A' and resid 2191 through 2209 removed outlier: 4.615A pdb=" N ALA A2195 " --> pdb=" O PRO A2191 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N ASN A2196 " --> pdb=" O LYS A2192 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N PHE A2200 " --> pdb=" O ASN A2196 " (cutoff:3.500A) removed outlier: 3.803A pdb=" N ARG A2206 " --> pdb=" O CYS A2202 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N ILE A2207 " --> pdb=" O TYR A2203 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N SER A2208 " --> pdb=" O PHE A2204 " (cutoff:3.500A) removed outlier: 5.397A pdb=" N ARG A2209 " --> pdb=" O CYS A2205 " (cutoff:3.500A) Processing helix chain 'A' and resid 2210 through 2217 removed outlier: 4.220A pdb=" N ASP A2217 " --> pdb=" O LYS A2213 " (cutoff:3.500A) Processing helix chain 'A' and resid 2218 through 2225 removed outlier: 4.769A pdb=" N GLU A2224 " --> pdb=" O SER A2220 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N ASN A2225 " --> pdb=" O TYR A2221 " (cutoff:3.500A) Processing helix chain 'A' and resid 2239 through 2249 removed outlier: 3.955A pdb=" N VAL A2243 " --> pdb=" O THR A2239 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N ALA A2244 " --> pdb=" O PRO A2240 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N ALA A2245 " --> pdb=" O LEU A2241 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N VAL A2248 " --> pdb=" O ALA A2244 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N MET A2249 " --> pdb=" O ALA A2245 " (cutoff:3.500A) Processing helix chain 'A' and resid 2251 through 2259 removed outlier: 5.639A pdb=" N ARG A2259 " --> pdb=" O ALA A2255 " (cutoff:3.500A) Processing helix chain 'A' and resid 2260 through 2274 removed outlier: 3.581A pdb=" N GLU A2264 " --> pdb=" O GLU A2260 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N LYS A2265 " --> pdb=" O PRO A2261 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N CYS A2273 " --> pdb=" O TYR A2269 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N GLY A2274 " --> pdb=" O LEU A2270 " (cutoff:3.500A) Processing helix chain 'A' and resid 2295 through 2308 removed outlier: 4.730A pdb=" N TYR A2299 " --> pdb=" O GLU A2295 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N LEU A2300 " --> pdb=" O GLY A2296 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N ASP A2301 " --> pdb=" O GLU A2297 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N PHE A2308 " --> pdb=" O ARG A2304 " (cutoff:3.500A) Processing helix chain 'A' and resid 2314 through 2329 removed outlier: 4.302A pdb=" N ALA A2318 " --> pdb=" O VAL A2314 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N VAL A2320 " --> pdb=" O GLU A2316 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N VAL A2321 " --> pdb=" O ASN A2317 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N VAL A2322 " --> pdb=" O ALA A2318 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ARG A2327 " --> pdb=" O ARG A2323 " (cutoff:3.500A) Proline residue: A2329 - end of helix Processing helix chain 'A' and resid 2343 through 2354 removed outlier: 4.074A pdb=" N GLU A2349 " --> pdb=" O LEU A2345 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N GLU A2350 " --> pdb=" O ALA A2346 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N ILE A2352 " --> pdb=" O MET A2348 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N LYS A2353 " --> pdb=" O GLU A2349 " (cutoff:3.500A) Processing helix chain 'A' and resid 2387 through 2404 removed outlier: 4.261A pdb=" N THR A2391 " --> pdb=" O ASN A2387 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N ALA A2394 " --> pdb=" O MET A2390 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N LEU A2396 " --> pdb=" O PHE A2392 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ASP A2398 " --> pdb=" O ALA A2394 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ALA A2404 " --> pdb=" O LEU A2400 " (cutoff:3.500A) Processing helix chain 'A' and resid 2408 through 2413 Processing helix chain 'A' and resid 2414 through 2429 removed outlier: 5.902A pdb=" N ILE A2418 " --> pdb=" O LYS A2414 " (cutoff:3.500A) removed outlier: 6.337A pdb=" N ARG A2419 " --> pdb=" O GLY A2415 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N ILE A2420 " --> pdb=" O GLU A2416 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N ARG A2421 " --> pdb=" O ALA A2417 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N LEU A2427 " --> pdb=" O ILE A2423 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ILE A2428 " --> pdb=" O LEU A2424 " (cutoff:3.500A) Proline residue: A2429 - end of helix Processing helix chain 'A' and resid 2432 through 2441 removed outlier: 3.524A pdb=" N SER A2438 " --> pdb=" O VAL A2434 " (cutoff:3.500A) removed outlier: 5.155A pdb=" N ILE A2439 " --> pdb=" O GLY A2435 " (cutoff:3.500A) removed outlier: 4.391A pdb=" N ALA A2440 " --> pdb=" O VAL A2436 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N PHE A2441 " --> pdb=" O ILE A2437 " (cutoff:3.500A) Processing helix chain 'A' and resid 2461 through 2476 removed outlier: 4.732A pdb=" N HIS A2465 " --> pdb=" O PHE A2461 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N LYS A2466 " --> pdb=" O CYS A2462 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N ALA A2467 " --> pdb=" O PRO A2463 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N LEU A2471 " --> pdb=" O ALA A2467 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N PHE A2472 " --> pdb=" O ALA A2468 " (cutoff:3.500A) Processing helix chain 'A' and resid 2481 through 2489 removed outlier: 3.707A pdb=" N LEU A2485 " --> pdb=" O VAL A2481 " (cutoff:3.500A) removed outlier: 4.220A pdb=" N LEU A2488 " --> pdb=" O PHE A2484 " (cutoff:3.500A) removed outlier: 5.475A pdb=" N LEU A2489 " --> pdb=" O LEU A2485 " (cutoff:3.500A) Processing helix chain 'A' and resid 2491 through 2500 Proline residue: A2495 - end of helix removed outlier: 3.802A pdb=" N ALA A2500 " --> pdb=" O ASP A2496 " (cutoff:3.500A) Processing helix chain 'A' and resid 2511 through 2528 removed outlier: 3.696A pdb=" N ASN A2518 " --> pdb=" O ALA A2514 " (cutoff:3.500A) removed outlier: 4.585A pdb=" N CYS A2522 " --> pdb=" O ASN A2518 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N THR A2523 " --> pdb=" O ARG A2519 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N VAL A2525 " --> pdb=" O LEU A2521 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N LEU A2526 " --> pdb=" O CYS A2522 " (cutoff:3.500A) Proline residue: A2527 - end of helix Processing helix chain 'A' and resid 2537 through 2553 Processing helix chain 'A' and resid 2558 through 2576 removed outlier: 4.052A pdb=" N ILE A2570 " --> pdb=" O GLN A2566 " (cutoff:3.500A) removed outlier: 4.343A pdb=" N GLU A2571 " --> pdb=" O ARG A2567 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N VAL A2572 " --> pdb=" O ASP A2568 " (cutoff:3.500A) removed outlier: 3.864A pdb=" N CYS A2573 " --> pdb=" O SER A2569 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N LEU A2574 " --> pdb=" O ILE A2570 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N LEU A2575 " --> pdb=" O GLU A2571 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N SER A2576 " --> pdb=" O VAL A2572 " (cutoff:3.500A) Processing helix chain 'A' and resid 2583 through 2601 removed outlier: 3.823A pdb=" N GLN A2587 " --> pdb=" O PRO A2583 " (cutoff:3.500A) removed outlier: 4.299A pdb=" N HIS A2588 " --> pdb=" O SER A2584 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N VAL A2594 " --> pdb=" O LEU A2590 " (cutoff:3.500A) Proline residue: A2598 - end of helix removed outlier: 5.155A pdb=" N ASN A2601 " --> pdb=" O VAL A2597 " (cutoff:3.500A) Processing helix chain 'A' and resid 2605 through 2624 removed outlier: 3.810A pdb=" N LEU A2624 " --> pdb=" O LYS A2620 " (cutoff:3.500A) Processing helix chain 'A' and resid 2634 through 2653 removed outlier: 4.745A pdb=" N GLU A2638 " --> pdb=" O ALA A2634 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N LEU A2641 " --> pdb=" O GLU A2637 " (cutoff:3.500A) Processing helix chain 'A' and resid 2658 through 2678 removed outlier: 4.131A pdb=" N LEU A2662 " --> pdb=" O TYR A2658 " (cutoff:3.500A) removed outlier: 3.631A pdb=" N PHE A2663 " --> pdb=" O GLU A2659 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N LEU A2665 " --> pdb=" O GLU A2661 " (cutoff:3.500A) Proline residue: A2668 - end of helix removed outlier: 3.606A pdb=" N SER A2671 " --> pdb=" O LEU A2667 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N ALA A2674 " --> pdb=" O LEU A2670 " (cutoff:3.500A) Proline residue: A2678 - end of helix Processing helix chain 'A' and resid 2715 through 2741 removed outlier: 3.893A pdb=" N TYR A2720 " --> pdb=" O GLU A2716 " (cutoff:3.500A) removed outlier: 4.297A pdb=" N PHE A2721 " --> pdb=" O LYS A2717 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N ASN A2723 " --> pdb=" O GLU A2719 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N LYS A2724 " --> pdb=" O TYR A2720 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N HIS A2730 " --> pdb=" O ALA A2726 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N LYS A2737 " --> pdb=" O TRP A2733 " (cutoff:3.500A) removed outlier: 3.535A pdb=" N LEU A2738 " --> pdb=" O SER A2734 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N ALA A2739 " --> pdb=" O MET A2735 " (cutoff:3.500A) removed outlier: 4.294A pdb=" N ASN A2740 " --> pdb=" O ASP A2736 " (cutoff:3.500A) Processing helix chain 'A' and resid 2765 through 2774 removed outlier: 3.959A pdb=" N GLU A2770 " --> pdb=" O GLU A2766 " (cutoff:3.500A) removed outlier: 5.600A pdb=" N ILE A2771 " --> pdb=" O LYS A2767 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N TYR A2772 " --> pdb=" O GLU A2768 " (cutoff:3.500A) Processing helix chain 'A' and resid 2775 through 2787 removed outlier: 4.245A pdb=" N SER A2779 " --> pdb=" O PRO A2775 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N LEU A2780 " --> pdb=" O ILE A2776 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N LYS A2781 " --> pdb=" O LYS A2777 " (cutoff:3.500A) removed outlier: 3.931A pdb=" N THR A2782 " --> pdb=" O GLU A2778 " (cutoff:3.500A) removed outlier: 4.181A pdb=" N TRP A2786 " --> pdb=" O THR A2782 " (cutoff:3.500A) removed outlier: 5.027A pdb=" N GLY A2787 " --> pdb=" O MET A2783 " (cutoff:3.500A) Processing helix chain 'A' and resid 2835 through 2861 removed outlier: 3.660A pdb=" N MET A2844 " --> pdb=" O ALA A2840 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N GLU A2860 " --> pdb=" O LYS A2856 " (cutoff:3.500A) Processing helix chain 'A' and resid 2881 through 2901 removed outlier: 4.934A pdb=" N ASP A2886 " --> pdb=" O GLU A2882 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N LYS A2889 " --> pdb=" O LYS A2885 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N ILE A2893 " --> pdb=" O LYS A2889 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N LEU A2894 " --> pdb=" O ALA A2890 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N PHE A2896 " --> pdb=" O ASP A2892 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N LEU A2897 " --> pdb=" O ILE A2893 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N ILE A2899 " --> pdb=" O LYS A2895 " (cutoff:3.500A) Processing helix chain 'A' and resid 2986 through 3004 Proline residue: A2990 - end of helix removed outlier: 4.126A pdb=" N ALA A2997 " --> pdb=" O SER A2993 " (cutoff:3.500A) removed outlier: 4.234A pdb=" N SER A2998 " --> pdb=" O GLY A2994 " (cutoff:3.500A) removed outlier: 4.518A pdb=" N LYS A3002 " --> pdb=" O SER A2998 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N GLU A3003 " --> pdb=" O ASN A2999 " (cutoff:3.500A) removed outlier: 4.443A pdb=" N MET A3004 " --> pdb=" O LYS A3000 " (cutoff:3.500A) Processing helix chain 'A' and resid 3010 through 3028 removed outlier: 3.509A pdb=" N LEU A3015 " --> pdb=" O LYS A3011 " (cutoff:3.500A) removed outlier: 3.643A pdb=" N ASP A3026 " --> pdb=" O LEU A3022 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N ALA A3027 " --> pdb=" O PHE A3023 " (cutoff:3.500A) Processing helix chain 'A' and resid 3035 through 3052 removed outlier: 3.511A pdb=" N THR A3040 " --> pdb=" O ILE A3036 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N LEU A3051 " --> pdb=" O MET A3047 " (cutoff:3.500A) Processing helix chain 'A' and resid 3061 through 3068 removed outlier: 3.922A pdb=" N ALA A3065 " --> pdb=" O PHE A3061 " (cutoff:3.500A) removed outlier: 4.366A pdb=" N GLU A3067 " --> pdb=" O ASP A3063 " (cutoff:3.500A) removed outlier: 5.220A pdb=" N ASP A3068 " --> pdb=" O ASN A3064 " (cutoff:3.500A) Processing helix chain 'A' and resid 3069 through 3082 Processing helix chain 'A' and resid 3099 through 3115 removed outlier: 3.747A pdb=" N LEU A3103 " --> pdb=" O THR A3099 " (cutoff:3.500A) Proline residue: A3104 - end of helix removed outlier: 3.631A pdb=" N GLU A3111 " --> pdb=" O SER A3107 " (cutoff:3.500A) removed outlier: 3.930A pdb=" N GLY A3114 " --> pdb=" O PHE A3110 " (cutoff:3.500A) removed outlier: 5.022A pdb=" N GLN A3115 " --> pdb=" O GLU A3111 " (cutoff:3.500A) Processing helix chain 'A' and resid 3124 through 3144 removed outlier: 3.588A pdb=" N TYR A3139 " --> pdb=" O LEU A3135 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N GLY A3142 " --> pdb=" O LEU A3138 " (cutoff:3.500A) Processing helix chain 'A' and resid 3149 through 3166 removed outlier: 3.932A pdb=" N ARG A3153 " --> pdb=" O VAL A3149 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N SER A3154 " --> pdb=" O GLU A3150 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N ALA A3161 " --> pdb=" O GLY A3157 " (cutoff:3.500A) removed outlier: 5.028A pdb=" N GLY A3165 " --> pdb=" O ALA A3161 " (cutoff:3.500A) removed outlier: 4.404A pdb=" N ALA A3166 " --> pdb=" O ALA A3162 " (cutoff:3.500A) Processing helix chain 'A' and resid 3171 through 3182 removed outlier: 3.883A pdb=" N ILE A3181 " --> pdb=" O ASP A3177 " (cutoff:3.500A) removed outlier: 4.254A pdb=" N TYR A3182 " --> pdb=" O LYS A3178 " (cutoff:3.500A) Processing helix chain 'A' and resid 3591 through 3609 removed outlier: 3.614A pdb=" N LYS A3597 " --> pdb=" O SER A3593 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N ALA A3599 " --> pdb=" O GLN A3595 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N ALA A3602 " --> pdb=" O ARG A3598 " (cutoff:3.500A) removed outlier: 4.571A pdb=" N PHE A3604 " --> pdb=" O VAL A3600 " (cutoff:3.500A) removed outlier: 5.092A pdb=" N ARG A3605 " --> pdb=" O VAL A3601 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N ALA A3607 " --> pdb=" O CYS A3603 " (cutoff:3.500A) Proline residue: A3608 - end of helix Processing helix chain 'A' and resid 3613 through 3629 removed outlier: 4.077A pdb=" N LYS A3627 " --> pdb=" O GLN A3623 " (cutoff:3.500A) Processing helix chain 'A' and resid 3636 through 3647 removed outlier: 4.541A pdb=" N LYS A3640 " --> pdb=" O TYR A3636 " (cutoff:3.500A) removed outlier: 5.214A pdb=" N LYS A3647 " --> pdb=" O GLU A3643 " (cutoff:3.500A) Processing helix chain 'A' and resid 3663 through 3679 removed outlier: 3.669A pdb=" N PHE A3672 " --> pdb=" O LEU A3668 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N ARG A3674 " --> pdb=" O LEU A3670 " (cutoff:3.500A) removed outlier: 5.337A pdb=" N GLU A3679 " --> pdb=" O THR A3675 " (cutoff:3.500A) Processing helix chain 'A' and resid 3686 through 3700 removed outlier: 3.932A pdb=" N ASP A3694 " --> pdb=" O MET A3690 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N SER A3699 " --> pdb=" O ILE A3695 " (cutoff:3.500A) removed outlier: 4.528A pdb=" N CYS A3700 " --> pdb=" O MET A3696 " (cutoff:3.500A) Processing helix chain 'A' and resid 3714 through 3734 removed outlier: 3.754A pdb=" N LYS A3718 " --> pdb=" O SER A3714 " (cutoff:3.500A) removed outlier: 4.083A pdb=" N GLU A3721 " --> pdb=" O GLU A3717 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N LEU A3732 " --> pdb=" O GLN A3728 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N ASP A3734 " --> pdb=" O ALA A3730 " (cutoff:3.500A) Processing helix chain 'A' and resid 3736 through 3749 removed outlier: 3.864A pdb=" N MET A3740 " --> pdb=" O GLY A3736 " (cutoff:3.500A) removed outlier: 4.280A pdb=" N VAL A3741 " --> pdb=" O ALA A3737 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N LEU A3742 " --> pdb=" O ALA A3738 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ILE A3745 " --> pdb=" O VAL A3741 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER A3746 " --> pdb=" O LEU A3742 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N LYS A3749 " --> pdb=" O ILE A3745 " (cutoff:3.500A) Processing helix chain 'A' and resid 3753 through 3768 removed outlier: 3.579A pdb=" N THR A3759 " --> pdb=" O MET A3755 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ALA A3765 " --> pdb=" O LYS A3761 " (cutoff:3.500A) removed outlier: 3.727A pdb=" N LEU A3767 " --> pdb=" O GLY A3763 " (cutoff:3.500A) Processing helix chain 'A' and resid 3771 through 3786 removed outlier: 4.178A pdb=" N GLN A3775 " --> pdb=" O ASN A3771 " (cutoff:3.500A) removed outlier: 3.792A pdb=" N LEU A3779 " --> pdb=" O GLN A3775 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N LYS A3786 " --> pdb=" O LEU A3782 " (cutoff:3.500A) Processing helix chain 'A' and resid 3787 through 3801 removed outlier: 4.328A pdb=" N PHE A3791 " --> pdb=" O ASP A3787 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N SER A3800 " --> pdb=" O GLY A3796 " (cutoff:3.500A) removed outlier: 4.214A pdb=" N CYS A3801 " --> pdb=" O LEU A3797 " (cutoff:3.500A) Processing helix chain 'A' and resid 3805 through 3819 removed outlier: 3.676A pdb=" N PHE A3809 " --> pdb=" O ASP A3805 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ARG A3811 " --> pdb=" O ASN A3807 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N GLN A3812 " --> pdb=" O ALA A3808 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ASN A3813 " --> pdb=" O PHE A3809 " (cutoff:3.500A) Processing helix chain 'A' and resid 3829 through 3849 removed outlier: 5.256A pdb=" N ASP A3833 " --> pdb=" O LYS A3829 " (cutoff:3.500A) removed outlier: 6.708A pdb=" N GLU A3835 " --> pdb=" O LEU A3831 " (cutoff:3.500A) removed outlier: 6.615A pdb=" N PHE A3836 " --> pdb=" O GLN A3832 " (cutoff:3.500A) removed outlier: 4.576A pdb=" N THR A3837 " --> pdb=" O ASP A3833 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N CYS A3848 " --> pdb=" O LEU A3844 " (cutoff:3.500A) Processing helix chain 'A' and resid 3852 through 3861 removed outlier: 3.793A pdb=" N ARG A3860 " --> pdb=" O GLN A3856 " (cutoff:3.500A) Processing helix chain 'A' and resid 3870 through 3894 removed outlier: 3.689A pdb=" N VAL A3876 " --> pdb=" O ILE A3872 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N LEU A3879 " --> pdb=" O THR A3875 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N ARG A3881 " --> pdb=" O ASP A3877 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N ASP A3888 " --> pdb=" O GLU A3884 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N PHE A3889 " --> pdb=" O SER A3885 " (cutoff:3.500A) Processing helix chain 'A' and resid 3900 through 3926 removed outlier: 3.549A pdb=" N ASN A3906 " --> pdb=" O GLN A3902 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ALA A3914 " --> pdb=" O ALA A3910 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N GLU A3923 " --> pdb=" O ASN A3919 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N TYR A3924 " --> pdb=" O THR A3920 " (cutoff:3.500A) removed outlier: 3.912A pdb=" N ILE A3925 " --> pdb=" O LEU A3921 " (cutoff:3.500A) Processing helix chain 'A' and resid 3929 through 3940 removed outlier: 3.750A pdb=" N GLN A3933 " --> pdb=" O CYS A3929 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N HIS A3938 " --> pdb=" O GLN A3934 " (cutoff:3.500A) removed outlier: 5.234A pdb=" N ARG A3940 " --> pdb=" O LEU A3936 " (cutoff:3.500A) Processing helix chain 'A' and resid 3941 through 3962 removed outlier: 3.747A pdb=" N HIS A3954 " --> pdb=" O HIS A3950 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N GLN A3956 " --> pdb=" O PHE A3952 " (cutoff:3.500A) removed outlier: 4.799A pdb=" N MET A3957 " --> pdb=" O ALA A3953 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N GLN A3961 " --> pdb=" O MET A3957 " (cutoff:3.500A) removed outlier: 5.192A pdb=" N ASP A3962 " --> pdb=" O LYS A3958 " (cutoff:3.500A) Processing helix chain 'A' and resid 3963 through 3988 removed outlier: 5.084A pdb=" N GLU A3967 " --> pdb=" O SER A3963 " (cutoff:3.500A) removed outlier: 5.796A pdb=" N LEU A3968 " --> pdb=" O SER A3964 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N GLU A3971 " --> pdb=" O GLU A3967 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N LEU A3983 " --> pdb=" O MET A3979 " (cutoff:3.500A) removed outlier: 3.536A pdb=" N LEU A3987 " --> pdb=" O LEU A3983 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N GLU A3988 " --> pdb=" O LEU A3984 " (cutoff:3.500A) Processing helix chain 'A' and resid 3994 through 4008 removed outlier: 3.649A pdb=" N ASP A4002 " --> pdb=" O LYS A3998 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N LEU A4004 " --> pdb=" O MET A4000 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N SER A4008 " --> pdb=" O LEU A4004 " (cutoff:3.500A) Processing helix chain 'A' and resid 4009 through 4030 removed outlier: 3.593A pdb=" N MET A4013 " --> pdb=" O ASN A4009 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N PHE A4021 " --> pdb=" O PHE A4017 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N SER A4030 " --> pdb=" O ASP A4026 " (cutoff:3.500A) Processing helix chain 'A' and resid 4031 through 4036 Processing helix chain 'A' and resid 4045 through 4057 removed outlier: 3.554A pdb=" N PHE A4049 " --> pdb=" O SER A4045 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N GLU A4054 " --> pdb=" O HIS A4050 " (cutoff:3.500A) removed outlier: 3.768A pdb=" N LYS A4057 " --> pdb=" O MET A4053 " (cutoff:3.500A) Processing helix chain 'A' and resid 4060 through 4071 removed outlier: 5.723A pdb=" N CYS A4070 " --> pdb=" O PHE A4066 " (cutoff:3.500A) removed outlier: 4.760A pdb=" N ALA A4071 " --> pdb=" O LEU A4067 " (cutoff:3.500A) Processing helix chain 'A' and resid 4081 through 4090 removed outlier: 4.562A pdb=" N VAL A4085 " --> pdb=" O TYR A4081 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N LYS A4086 " --> pdb=" O GLU A4082 " (cutoff:3.500A) Processing helix chain 'A' and resid 4092 through 4110 removed outlier: 5.623A pdb=" N GLY A4096 " --> pdb=" O ALA A4092 " (cutoff:3.500A) Processing helix chain 'A' and resid 4113 through 4124 removed outlier: 3.612A pdb=" N GLU A4121 " --> pdb=" O GLN A4117 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ALA A4123 " --> pdb=" O PHE A4119 " (cutoff:3.500A) Processing helix chain 'A' and resid 4125 through 4133 Proline residue: A4132 - end of helix Processing helix chain 'A' and resid 4154 through 4164 removed outlier: 3.982A pdb=" N GLU A4162 " --> pdb=" O ARG A4158 " (cutoff:3.500A) removed outlier: 4.349A pdb=" N LYS A4163 " --> pdb=" O THR A4159 " (cutoff:3.500A) Proline residue: A4164 - end of helix Processing helix chain 'A' and resid 4165 through 4180 removed outlier: 3.511A pdb=" N PHE A4173 " --> pdb=" O SER A4169 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N VAL A4178 " --> pdb=" O ILE A4174 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N ASN A4179 " --> pdb=" O PHE A4175 " (cutoff:3.500A) Processing helix chain 'A' and resid 4183 through 4207 removed outlier: 3.966A pdb=" N MET A4187 " --> pdb=" O GLU A4183 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N GLU A4188 " --> pdb=" O LYS A4184 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ASP A4196 " --> pdb=" O ASN A4192 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ILE A4198 " --> pdb=" O CYS A4194 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLN A4206 " --> pdb=" O GLN A4202 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N ILE A4207 " --> pdb=" O LEU A4203 " (cutoff:3.500A) Processing helix chain 'A' and resid 4487 through 4500 removed outlier: 3.963A pdb=" N LYS A4491 " --> pdb=" O ALA A4487 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LEU A4492 " --> pdb=" O TYR A4488 " (cutoff:3.500A) removed outlier: 4.498A pdb=" N PHE A4500 " --> pdb=" O PHE A4496 " (cutoff:3.500A) Processing helix chain 'A' and resid 4501 through 4521 removed outlier: 3.778A pdb=" N MET A4505 " --> pdb=" O TYR A4501 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N ALA A4511 " --> pdb=" O ALA A4507 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N ASN A4515 " --> pdb=" O ALA A4511 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU A4519 " --> pdb=" O ASN A4515 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N PHE A4520 " --> pdb=" O PHE A4516 " (cutoff:3.500A) removed outlier: 4.694A pdb=" N TYR A4521 " --> pdb=" O ILE A4517 " (cutoff:3.500A) Processing helix chain 'A' and resid 4569 through 4614 removed outlier: 3.955A pdb=" N ILE A4578 " --> pdb=" O ARG A4574 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N ILE A4583 " --> pdb=" O LEU A4579 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N ILE A4588 " --> pdb=" O SER A4584 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N GLY A4590 " --> pdb=" O PHE A4586 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N CYS A4593 " --> pdb=" O ILE A4589 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N LYS A4595 " --> pdb=" O TYR A4591 " (cutoff:3.500A) removed outlier: 4.619A pdb=" N VAL A4596 " --> pdb=" O TYR A4592 " (cutoff:3.500A) Proline residue: A4597 - end of helix removed outlier: 3.705A pdb=" N LYS A4610 " --> pdb=" O GLU A4606 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N LEU A4611 " --> pdb=" O VAL A4607 " (cutoff:3.500A) Processing helix chain 'A' and resid 4626 through 4639 removed outlier: 4.777A pdb=" N LEU A4634 " --> pdb=" O GLN A4630 " (cutoff:3.500A) removed outlier: 4.905A pdb=" N VAL A4635 " --> pdb=" O TRP A4631 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ILE A4636 " --> pdb=" O ASP A4632 " (cutoff:3.500A) removed outlier: 5.070A pdb=" N ASN A4637 " --> pdb=" O ARG A4633 " (cutoff:3.500A) removed outlier: 5.926A pdb=" N THR A4638 " --> pdb=" O LEU A4634 " (cutoff:3.500A) removed outlier: 5.664A pdb=" N GLN A4639 " --> pdb=" O VAL A4635 " (cutoff:3.500A) Processing helix chain 'A' and resid 4649 through 4658 removed outlier: 3.578A pdb=" N MET A4655 " --> pdb=" O LYS A4651 " (cutoff:3.500A) Processing helix chain 'A' and resid 4663 through 4672 removed outlier: 3.836A pdb=" N SER A4668 " --> pdb=" O ARG A4664 " (cutoff:3.500A) Processing helix chain 'A' and resid 4703 through 4718 removed outlier: 3.525A pdb=" N LEU A4711 " --> pdb=" O GLN A4707 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N GLY A4712 " --> pdb=" O MET A4708 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N VAL A4713 " --> pdb=" O TRP A4709 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N VAL A4714 " --> pdb=" O LYS A4710 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N THR A4716 " --> pdb=" O GLY A4712 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ASP A4717 " --> pdb=" O VAL A4713 " (cutoff:3.500A) removed outlier: 5.682A pdb=" N ASN A4718 " --> pdb=" O VAL A4714 " (cutoff:3.500A) Processing helix chain 'A' and resid 4719 through 4737 removed outlier: 3.571A pdb=" N SER A4730 " --> pdb=" O TYR A4726 " (cutoff:3.500A) Processing helix chain 'A' and resid 4744 through 4750 removed outlier: 4.618A pdb=" N ALA A4748 " --> pdb=" O LEU A4744 " (cutoff:3.500A) removed outlier: 4.117A pdb=" N MET A4749 " --> pdb=" O LEU A4745 " (cutoff:3.500A) Processing helix chain 'A' and resid 4763 through 4787 removed outlier: 4.875A pdb=" N GLN A4767 " --> pdb=" O HIS A4763 " (cutoff:3.500A) removed outlier: 4.726A pdb=" N LEU A4768 " --> pdb=" O ASN A4764 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N LEU A4770 " --> pdb=" O LYS A4766 " (cutoff:3.500A) removed outlier: 3.783A pdb=" N VAL A4779 " --> pdb=" O LEU A4775 " (cutoff:3.500A) Processing helix chain 'A' and resid 4790 through 4795 removed outlier: 3.933A pdb=" N TYR A4794 " --> pdb=" O PHE A4790 " (cutoff:3.500A) removed outlier: 5.555A pdb=" N ASN A4795 " --> pdb=" O ARG A4791 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4790 through 4795' Processing helix chain 'A' and resid 4809 through 4825 removed outlier: 4.076A pdb=" N TYR A4814 " --> pdb=" O MET A4810 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N TYR A4819 " --> pdb=" O MET A4815 " (cutoff:3.500A) removed outlier: 5.754A pdb=" N ALA A4824 " --> pdb=" O VAL A4820 " (cutoff:3.500A) removed outlier: 4.548A pdb=" N GLY A4825 " --> pdb=" O GLY A4821 " (cutoff:3.500A) Processing helix chain 'A' and resid 4827 through 4832 removed outlier: 6.033A pdb=" N GLU A4831 " --> pdb=" O GLY A4827 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N ILE A4832 " --> pdb=" O ILE A4828 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4827 through 4832' Processing helix chain 'A' and resid 4840 through 4854 removed outlier: 3.630A pdb=" N PHE A4847 " --> pdb=" O TYR A4843 " (cutoff:3.500A) Processing helix chain 'A' and resid 4858 through 4889 removed outlier: 3.765A pdb=" N ILE A4867 " --> pdb=" O ILE A4863 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N ASP A4869 " --> pdb=" O GLY A4865 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N ARG A4875 " --> pdb=" O PHE A4871 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N GLN A4880 " --> pdb=" O ASP A4876 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N LYS A4882 " --> pdb=" O GLN A4878 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N ASP A4884 " --> pdb=" O GLN A4880 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N LYS A4888 " --> pdb=" O ASP A4884 " (cutoff:3.500A) removed outlier: 5.007A pdb=" N CYS A4889 " --> pdb=" O MET A4885 " (cutoff:3.500A) Processing helix chain 'A' and resid 4895 through 4900 removed outlier: 4.070A pdb=" N PHE A4899 " --> pdb=" O GLY A4895 " (cutoff:3.500A) Processing helix chain 'A' and resid 4904 through 4912 removed outlier: 3.957A pdb=" N THR A4908 " --> pdb=" O HIS A4904 " (cutoff:3.500A) Processing helix chain 'A' and resid 4915 through 4930 removed outlier: 3.699A pdb=" N TYR A4919 " --> pdb=" O ASN A4915 " (cutoff:3.500A) removed outlier: 4.143A pdb=" N LEU A4920 " --> pdb=" O LEU A4916 " (cutoff:3.500A) removed outlier: 5.808A pdb=" N ASP A4930 " --> pdb=" O LEU A4926 " (cutoff:3.500A) Processing helix chain 'A' and resid 4935 through 4948 removed outlier: 3.682A pdb=" N TYR A4940 " --> pdb=" O GLY A4936 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N TRP A4942 " --> pdb=" O GLU A4938 " (cutoff:3.500A) Processing helix chain 'A' and resid 4958 through 4964 removed outlier: 4.806A pdb=" N GLN A4962 " --> pdb=" O CYS A4958 " (cutoff:3.500A) removed outlier: 4.670A pdb=" N TYR A4963 " --> pdb=" O PHE A4959 " (cutoff:3.500A) removed outlier: 5.121A pdb=" N GLU A4964 " --> pdb=" O ARG A4960 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4958 through 4964' Processing helix chain 'A' and resid 398 through 403 removed outlier: 4.459A pdb=" N ASP A 401 " --> pdb=" O HIS A 398 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N GLY A 402 " --> pdb=" O MET A 399 " (cutoff:3.500A) removed outlier: 5.326A pdb=" N LEU A 403 " --> pdb=" O ASP A 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 398 through 403' Processing helix chain 'A' and resid 4738 through 4743 removed outlier: 5.240A pdb=" N ALA A4741 " --> pdb=" O PHE A4738 " (cutoff:3.500A) removed outlier: 4.423A pdb=" N ALA A4742 " --> pdb=" O PHE A4739 " (cutoff:3.500A) Processing helix chain 'A' and resid 54 through 59 Proline residue: A 59 - end of helix No H-bonds generated for 'chain 'A' and resid 54 through 59' Processing helix chain 'A' and resid 4615 through 4620 removed outlier: 3.568A pdb=" N GLU A4620 " --> pdb=" O GLY A4615 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4615 through 4620' Processing helix chain 'D' and resid 61 through 66 removed outlier: 5.430A pdb=" N CYS D 65 " --> pdb=" O ASP D 61 " (cutoff:3.500A) Processing helix chain 'D' and resid 74 through 84 removed outlier: 4.120A pdb=" N ASN D 84 " --> pdb=" O GLU D 80 " (cutoff:3.500A) Processing helix chain 'D' and resid 155 through 160 removed outlier: 4.753A pdb=" N TRP D 159 " --> pdb=" O GLY D 155 " (cutoff:3.500A) removed outlier: 5.632A pdb=" N TRP D 160 " --> pdb=" O GLU D 156 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 155 through 160' Processing helix chain 'D' and resid 265 through 271 removed outlier: 4.323A pdb=" N VAL D 269 " --> pdb=" O GLY D 265 " (cutoff:3.500A) removed outlier: 4.548A pdb=" N ALA D 271 " --> pdb=" O VAL D 267 " (cutoff:3.500A) Processing helix chain 'D' and resid 318 through 323 removed outlier: 3.682A pdb=" N ALA D 322 " --> pdb=" O ASP D 318 " (cutoff:3.500A) removed outlier: 4.831A pdb=" N ASP D 323 " --> pdb=" O LYS D 319 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 318 through 323' Processing helix chain 'D' and resid 409 through 438 removed outlier: 3.654A pdb=" N ARG D 420 " --> pdb=" O ALA D 416 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N SER D 421 " --> pdb=" O ARG D 417 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N PHE D 424 " --> pdb=" O ARG D 420 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N LEU D 425 " --> pdb=" O SER D 421 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N PHE D 426 " --> pdb=" O THR D 422 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N ARG D 428 " --> pdb=" O PHE D 424 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LYS D 438 " --> pdb=" O ASP D 434 " (cutoff:3.500A) Processing helix chain 'D' and resid 448 through 464 removed outlier: 5.158A pdb=" N VAL D 452 " --> pdb=" O PRO D 448 " (cutoff:3.500A) Processing helix chain 'D' and resid 471 through 493 removed outlier: 3.564A pdb=" N ASN D 477 " --> pdb=" O GLU D 473 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N PHE D 489 " --> pdb=" O ARG D 485 " (cutoff:3.500A) Processing helix chain 'D' and resid 494 through 507 removed outlier: 4.453A pdb=" N VAL D 507 " --> pdb=" O ASP D 503 " (cutoff:3.500A) Processing helix chain 'D' and resid 519 through 545 removed outlier: 4.145A pdb=" N GLY D 523 " --> pdb=" O GLY D 519 " (cutoff:3.500A) removed outlier: 5.788A pdb=" N SER D 525 " --> pdb=" O GLU D 521 " (cutoff:3.500A) removed outlier: 6.317A pdb=" N TRP D 526 " --> pdb=" O ALA D 522 " (cutoff:3.500A) removed outlier: 6.171A pdb=" N LYS D 527 " --> pdb=" O GLY D 523 " (cutoff:3.500A) removed outlier: 5.854A pdb=" N SER D 528 " --> pdb=" O GLU D 524 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N LEU D 530 " --> pdb=" O TRP D 526 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N ILE D 541 " --> pdb=" O LEU D 537 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N ARG D 542 " --> pdb=" O ALA D 538 " (cutoff:3.500A) removed outlier: 4.434A pdb=" N GLY D 543 " --> pdb=" O ALA D 539 " (cutoff:3.500A) removed outlier: 5.333A pdb=" N ASN D 544 " --> pdb=" O LEU D 540 " (cutoff:3.500A) removed outlier: 5.512A pdb=" N ARG D 545 " --> pdb=" O ILE D 541 " (cutoff:3.500A) Processing helix chain 'D' and resid 546 through 552 removed outlier: 4.848A pdb=" N SER D 552 " --> pdb=" O CYS D 548 " (cutoff:3.500A) Processing helix chain 'D' and resid 553 through 563 removed outlier: 3.824A pdb=" N TRP D 557 " --> pdb=" O GLY D 553 " (cutoff:3.500A) removed outlier: 3.981A pdb=" N GLU D 563 " --> pdb=" O ILE D 559 " (cutoff:3.500A) Processing helix chain 'D' and resid 564 through 582 removed outlier: 6.757A pdb=" N SER D 568 " --> pdb=" O ARG D 564 " (cutoff:3.500A) removed outlier: 7.751A pdb=" N SER D 569 " --> pdb=" O LEU D 565 " (cutoff:3.500A) removed outlier: 7.035A pdb=" N GLY D 570 " --> pdb=" O GLU D 566 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ILE D 571 " --> pdb=" O ALA D 567 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N VAL D 574 " --> pdb=" O GLY D 570 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N LEU D 579 " --> pdb=" O LEU D 575 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N VAL D 580 " --> pdb=" O HIS D 576 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N GLU D 581 " --> pdb=" O CYS D 577 " (cutoff:3.500A) Processing helix chain 'D' and resid 583 through 590 removed outlier: 3.985A pdb=" N ASN D 587 " --> pdb=" O PRO D 583 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ILE D 588 " --> pdb=" O GLU D 584 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N ILE D 589 " --> pdb=" O ALA D 585 " (cutoff:3.500A) removed outlier: 5.757A pdb=" N LYS D 590 " --> pdb=" O LEU D 586 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 583 through 590' Processing helix chain 'D' and resid 591 through 605 removed outlier: 3.630A pdb=" N SER D 596 " --> pdb=" O GLY D 592 " (cutoff:3.500A) Processing helix chain 'D' and resid 607 through 620 removed outlier: 3.752A pdb=" N VAL D 613 " --> pdb=" O LYS D 609 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N LEU D 614 " --> pdb=" O VAL D 610 " (cutoff:3.500A) removed outlier: 4.706A pdb=" N CYS D 620 " --> pdb=" O SER D 616 " (cutoff:3.500A) Processing helix chain 'D' and resid 625 through 636 removed outlier: 3.732A pdb=" N GLN D 629 " --> pdb=" O VAL D 625 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N CYS D 633 " --> pdb=" O GLN D 629 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N ASP D 634 " --> pdb=" O HIS D 630 " (cutoff:3.500A) Processing helix chain 'D' and resid 821 through 827 removed outlier: 4.813A pdb=" N ALA D 825 " --> pdb=" O PRO D 821 " (cutoff:3.500A) removed outlier: 4.853A pdb=" N VAL D 826 " --> pdb=" O CYS D 822 " (cutoff:3.500A) removed outlier: 5.239A pdb=" N LEU D 827 " --> pdb=" O TYR D 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 821 through 827' Processing helix chain 'D' and resid 875 through 901 removed outlier: 3.730A pdb=" N ARG D 880 " --> pdb=" O PRO D 876 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N LEU D 892 " --> pdb=" O ASN D 888 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N LYS D 897 " --> pdb=" O TRP D 893 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N LEU D 900 " --> pdb=" O ASN D 896 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLY D 901 " --> pdb=" O LYS D 897 " (cutoff:3.500A) Processing helix chain 'D' and resid 920 through 925 Proline residue: D 925 - end of helix Processing helix chain 'D' and resid 929 through 946 removed outlier: 3.511A pdb=" N MET D 935 " --> pdb=" O TYR D 931 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N SER D 936 " --> pdb=" O ASN D 932 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N LEU D 940 " --> pdb=" O SER D 936 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N THR D 942 " --> pdb=" O GLU D 938 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N LEU D 944 " --> pdb=" O LEU D 940 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N ALA D 945 " --> pdb=" O LYS D 941 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N LEU D 946 " --> pdb=" O THR D 942 " (cutoff:3.500A) Processing helix chain 'D' and resid 989 through 1012 removed outlier: 3.999A pdb=" N GLU D 993 " --> pdb=" O THR D 989 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N LEU D 999 " --> pdb=" O MET D 995 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N ALA D1000 " --> pdb=" O VAL D 996 " (cutoff:3.500A) Processing helix chain 'D' and resid 1039 through 1061 removed outlier: 4.749A pdb=" N LYS D1043 " --> pdb=" O ASP D1039 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N LYS D1044 " --> pdb=" O ASP D1040 " (cutoff:3.500A) removed outlier: 4.997A pdb=" N SER D1045 " --> pdb=" O ARG D1041 " (cutoff:3.500A) removed outlier: 5.436A pdb=" N ASN D1046 " --> pdb=" O THR D1042 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER D1049 " --> pdb=" O SER D1045 " (cutoff:3.500A) Processing helix chain 'D' and resid 1220 through 1225 removed outlier: 5.648A pdb=" N LYS D1225 " --> pdb=" O VAL D1221 " (cutoff:3.500A) Processing helix chain 'D' and resid 1230 through 1235 removed outlier: 6.809A pdb=" N GLU D1234 " --> pdb=" O CYS D1230 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N GLY D1235 " --> pdb=" O GLY D1231 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1230 through 1235' Processing helix chain 'D' and resid 1570 through 1576 removed outlier: 4.320A pdb=" N GLU D1574 " --> pdb=" O LEU D1570 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N HIS D1575 " --> pdb=" O PHE D1571 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N LYS D1576 " --> pdb=" O LYS D1572 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1570 through 1576' Processing helix chain 'D' and resid 1640 through 1648 removed outlier: 3.694A pdb=" N LEU D1644 " --> pdb=" O ASP D1640 " (cutoff:3.500A) removed outlier: 4.555A pdb=" N THR D1645 " --> pdb=" O ILE D1641 " (cutoff:3.500A) removed outlier: 5.848A pdb=" N GLU D1646 " --> pdb=" O LEU D1642 " (cutoff:3.500A) removed outlier: 4.119A pdb=" N GLN D1647 " --> pdb=" O GLU D1643 " (cutoff:3.500A) removed outlier: 4.393A pdb=" N GLU D1648 " --> pdb=" O LEU D1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1640 through 1648' Processing helix chain 'D' and resid 1649 through 1666 removed outlier: 3.737A pdb=" N CYS D1665 " --> pdb=" O TYR D1661 " (cutoff:3.500A) removed outlier: 4.578A pdb=" N ALA D1666 " --> pdb=" O SER D1662 " (cutoff:3.500A) Processing helix chain 'D' and resid 1669 through 1681 removed outlier: 3.581A pdb=" N CYS D1677 " --> pdb=" O ALA D1673 " (cutoff:3.500A) removed outlier: 4.437A pdb=" N SER D1678 " --> pdb=" O HIS D1674 " (cutoff:3.500A) removed outlier: 4.450A pdb=" N HIS D1679 " --> pdb=" O ALA D1675 " (cutoff:3.500A) Processing helix chain 'D' and resid 1682 through 1691 removed outlier: 3.610A pdb=" N ASN D1691 " --> pdb=" O TYR D1687 " (cutoff:3.500A) Processing helix chain 'D' and resid 1695 through 1710 Processing helix chain 'D' and resid 1711 through 1723 removed outlier: 3.549A pdb=" N ALA D1717 " --> pdb=" O SER D1713 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N MET D1721 " --> pdb=" O ALA D1717 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N ASN D1722 " --> pdb=" O ARG D1718 " (cutoff:3.500A) removed outlier: 5.342A pdb=" N ASN D1723 " --> pdb=" O LEU D1719 " (cutoff:3.500A) Processing helix chain 'D' and resid 1730 through 1736 removed outlier: 3.501A pdb=" N ILE D1736 " --> pdb=" O GLU D1732 " (cutoff:3.500A) Processing helix chain 'D' and resid 1771 through 1776 removed outlier: 4.275A pdb=" N TYR D1776 " --> pdb=" O ASN D1772 " (cutoff:3.500A) Processing helix chain 'D' and resid 1783 through 1802 removed outlier: 3.550A pdb=" N ALA D1789 " --> pdb=" O ASP D1785 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLU D1797 " --> pdb=" O GLN D1793 " (cutoff:3.500A) Processing helix chain 'D' and resid 1813 through 1832 removed outlier: 3.704A pdb=" N LEU D1817 " --> pdb=" O THR D1813 " (cutoff:3.500A) Proline residue: D1820 - end of helix removed outlier: 4.384A pdb=" N GLY D1832 " --> pdb=" O LEU D1828 " (cutoff:3.500A) Processing helix chain 'D' and resid 1835 through 1847 Processing helix chain 'D' and resid 1893 through 1898 removed outlier: 3.664A pdb=" N MET D1897 " --> pdb=" O GLY D1893 " (cutoff:3.500A) removed outlier: 5.588A pdb=" N LYS D1898 " --> pdb=" O LEU D1894 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1893 through 1898' Processing helix chain 'D' and resid 1900 through 1938 removed outlier: 4.179A pdb=" N LYS D1904 " --> pdb=" O PRO D1900 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N LEU D1905 " --> pdb=" O GLU D1901 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N TYR D1913 " --> pdb=" O LEU D1909 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N LEU D1914 " --> pdb=" O LEU D1910 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N ALA D1928 " --> pdb=" O GLU D1924 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N PHE D1929 " --> pdb=" O ALA D1925 " (cutoff:3.500A) removed outlier: 3.882A pdb=" N ASP D1932 " --> pdb=" O ALA D1928 " (cutoff:3.500A) Processing helix chain 'D' and resid 1940 through 1953 removed outlier: 3.529A pdb=" N ARG D1944 " --> pdb=" O ASN D1940 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N VAL D1948 " --> pdb=" O ARG D1944 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N MET D1949 " --> pdb=" O TYR D1945 " (cutoff:3.500A) removed outlier: 4.185A pdb=" N ASN D1953 " --> pdb=" O MET D1949 " (cutoff:3.500A) Processing helix chain 'D' and resid 1990 through 1997 removed outlier: 6.024A pdb=" N ARG D1994 " --> pdb=" O PRO D1990 " (cutoff:3.500A) removed outlier: 4.512A pdb=" N GLN D1996 " --> pdb=" O GLU D1992 " (cutoff:3.500A) Processing helix chain 'D' and resid 1999 through 2012 removed outlier: 4.130A pdb=" N ILE D2010 " --> pdb=" O THR D2006 " (cutoff:3.500A) removed outlier: 4.873A pdb=" N GLU D2011 " --> pdb=" O HIS D2007 " (cutoff:3.500A) removed outlier: 4.843A pdb=" N LEU D2012 " --> pdb=" O CYS D2008 " (cutoff:3.500A) Processing helix chain 'D' and resid 2026 through 2038 removed outlier: 3.859A pdb=" N LEU D2030 " --> pdb=" O ILE D2026 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N GLU D2035 " --> pdb=" O LEU D2031 " (cutoff:3.500A) Processing helix chain 'D' and resid 2058 through 2074 removed outlier: 4.174A pdb=" N LEU D2062 " --> pdb=" O THR D2058 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N SER D2064 " --> pdb=" O GLN D2060 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N MET D2067 " --> pdb=" O ILE D2063 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N VAL D2068 " --> pdb=" O SER D2064 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N SER D2074 " --> pdb=" O TRP D2070 " (cutoff:3.500A) Processing helix chain 'D' and resid 2078 through 2095 removed outlier: 3.523A pdb=" N VAL D2082 " --> pdb=" O ASP D2078 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N VAL D2087 " --> pdb=" O ARG D2083 " (cutoff:3.500A) removed outlier: 3.999A pdb=" N LEU D2088 " --> pdb=" O ALA D2084 " (cutoff:3.500A) Processing helix chain 'D' and resid 2096 through 2106 removed outlier: 3.501A pdb=" N ARG D2101 " --> pdb=" O GLY D2097 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N ALA D2102 " --> pdb=" O GLY D2098 " (cutoff:3.500A) removed outlier: 3.739A pdb=" N LEU D2103 " --> pdb=" O LEU D2099 " (cutoff:3.500A) Proline residue: D2104 - end of helix Processing helix chain 'D' and resid 2110 through 2132 removed outlier: 3.541A pdb=" N VAL D2114 " --> pdb=" O ASN D2110 " (cutoff:3.500A) removed outlier: 4.865A pdb=" N GLU D2115 " --> pdb=" O GLY D2111 " (cutoff:3.500A) removed outlier: 4.975A pdb=" N ASP D2116 " --> pdb=" O VAL D2112 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N ILE D2118 " --> pdb=" O VAL D2114 " (cutoff:3.500A) removed outlier: 4.103A pdb=" N ASN D2119 " --> pdb=" O GLU D2115 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N LEU D2120 " --> pdb=" O ASP D2116 " (cutoff:3.500A) removed outlier: 4.719A pdb=" N SER D2132 " --> pdb=" O ARG D2128 " (cutoff:3.500A) Processing helix chain 'D' and resid 2140 through 2153 removed outlier: 3.662A pdb=" N ARG D2145 " --> pdb=" O LYS D2141 " (cutoff:3.500A) Processing helix chain 'D' and resid 2154 through 2160 removed outlier: 4.548A pdb=" N GLN D2158 " --> pdb=" O LYS D2154 " (cutoff:3.500A) removed outlier: 5.872A pdb=" N HIS D2159 " --> pdb=" O VAL D2155 " (cutoff:3.500A) Proline residue: D2160 - end of helix No H-bonds generated for 'chain 'D' and resid 2154 through 2160' Processing helix chain 'D' and resid 2161 through 2167 Processing helix chain 'D' and resid 2168 through 2181 removed outlier: 4.619A pdb=" N GLY D2181 " --> pdb=" O VAL D2177 " (cutoff:3.500A) Processing helix chain 'D' and resid 2191 through 2209 removed outlier: 4.615A pdb=" N ALA D2195 " --> pdb=" O PRO D2191 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N ASN D2196 " --> pdb=" O LYS D2192 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N PHE D2200 " --> pdb=" O ASN D2196 " (cutoff:3.500A) removed outlier: 3.803A pdb=" N ARG D2206 " --> pdb=" O CYS D2202 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N ILE D2207 " --> pdb=" O TYR D2203 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N SER D2208 " --> pdb=" O PHE D2204 " (cutoff:3.500A) removed outlier: 5.397A pdb=" N ARG D2209 " --> pdb=" O CYS D2205 " (cutoff:3.500A) Processing helix chain 'D' and resid 2210 through 2217 removed outlier: 4.221A pdb=" N ASP D2217 " --> pdb=" O LYS D2213 " (cutoff:3.500A) Processing helix chain 'D' and resid 2218 through 2225 removed outlier: 4.769A pdb=" N GLU D2224 " --> pdb=" O SER D2220 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N ASN D2225 " --> pdb=" O TYR D2221 " (cutoff:3.500A) Processing helix chain 'D' and resid 2239 through 2249 removed outlier: 3.955A pdb=" N VAL D2243 " --> pdb=" O THR D2239 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N ALA D2244 " --> pdb=" O PRO D2240 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N ALA D2245 " --> pdb=" O LEU D2241 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N VAL D2248 " --> pdb=" O ALA D2244 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N MET D2249 " --> pdb=" O ALA D2245 " (cutoff:3.500A) Processing helix chain 'D' and resid 2251 through 2259 removed outlier: 5.639A pdb=" N ARG D2259 " --> pdb=" O ALA D2255 " (cutoff:3.500A) Processing helix chain 'D' and resid 2260 through 2274 removed outlier: 3.581A pdb=" N GLU D2264 " --> pdb=" O GLU D2260 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N LYS D2265 " --> pdb=" O PRO D2261 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N CYS D2273 " --> pdb=" O TYR D2269 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N GLY D2274 " --> pdb=" O LEU D2270 " (cutoff:3.500A) Processing helix chain 'D' and resid 2295 through 2308 removed outlier: 4.730A pdb=" N TYR D2299 " --> pdb=" O GLU D2295 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N LEU D2300 " --> pdb=" O GLY D2296 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N ASP D2301 " --> pdb=" O GLU D2297 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N PHE D2308 " --> pdb=" O ARG D2304 " (cutoff:3.500A) Processing helix chain 'D' and resid 2314 through 2329 removed outlier: 4.302A pdb=" N ALA D2318 " --> pdb=" O VAL D2314 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N VAL D2320 " --> pdb=" O GLU D2316 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N VAL D2321 " --> pdb=" O ASN D2317 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N VAL D2322 " --> pdb=" O ALA D2318 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ARG D2327 " --> pdb=" O ARG D2323 " (cutoff:3.500A) Proline residue: D2329 - end of helix Processing helix chain 'D' and resid 2343 through 2354 removed outlier: 4.074A pdb=" N GLU D2349 " --> pdb=" O LEU D2345 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N GLU D2350 " --> pdb=" O ALA D2346 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N ILE D2352 " --> pdb=" O MET D2348 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N LYS D2353 " --> pdb=" O GLU D2349 " (cutoff:3.500A) Processing helix chain 'D' and resid 2387 through 2404 removed outlier: 4.261A pdb=" N THR D2391 " --> pdb=" O ASN D2387 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N ALA D2394 " --> pdb=" O MET D2390 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N LEU D2396 " --> pdb=" O PHE D2392 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ASP D2398 " --> pdb=" O ALA D2394 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ALA D2404 " --> pdb=" O LEU D2400 " (cutoff:3.500A) Processing helix chain 'D' and resid 2408 through 2413 Processing helix chain 'D' and resid 2414 through 2429 removed outlier: 5.902A pdb=" N ILE D2418 " --> pdb=" O LYS D2414 " (cutoff:3.500A) removed outlier: 6.337A pdb=" N ARG D2419 " --> pdb=" O GLY D2415 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N ILE D2420 " --> pdb=" O GLU D2416 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N ARG D2421 " --> pdb=" O ALA D2417 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N LEU D2427 " --> pdb=" O ILE D2423 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ILE D2428 " --> pdb=" O LEU D2424 " (cutoff:3.500A) Proline residue: D2429 - end of helix Processing helix chain 'D' and resid 2432 through 2441 removed outlier: 3.525A pdb=" N SER D2438 " --> pdb=" O VAL D2434 " (cutoff:3.500A) removed outlier: 5.155A pdb=" N ILE D2439 " --> pdb=" O GLY D2435 " (cutoff:3.500A) removed outlier: 4.391A pdb=" N ALA D2440 " --> pdb=" O VAL D2436 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N PHE D2441 " --> pdb=" O ILE D2437 " (cutoff:3.500A) Processing helix chain 'D' and resid 2461 through 2476 removed outlier: 4.731A pdb=" N HIS D2465 " --> pdb=" O PHE D2461 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N LYS D2466 " --> pdb=" O CYS D2462 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N ALA D2467 " --> pdb=" O PRO D2463 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N LEU D2471 " --> pdb=" O ALA D2467 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N PHE D2472 " --> pdb=" O ALA D2468 " (cutoff:3.500A) Processing helix chain 'D' and resid 2481 through 2489 removed outlier: 3.707A pdb=" N LEU D2485 " --> pdb=" O VAL D2481 " (cutoff:3.500A) removed outlier: 4.220A pdb=" N LEU D2488 " --> pdb=" O PHE D2484 " (cutoff:3.500A) removed outlier: 5.474A pdb=" N LEU D2489 " --> pdb=" O LEU D2485 " (cutoff:3.500A) Processing helix chain 'D' and resid 2491 through 2500 Proline residue: D2495 - end of helix removed outlier: 3.803A pdb=" N ALA D2500 " --> pdb=" O ASP D2496 " (cutoff:3.500A) Processing helix chain 'D' and resid 2511 through 2528 removed outlier: 3.696A pdb=" N ASN D2518 " --> pdb=" O ALA D2514 " (cutoff:3.500A) removed outlier: 4.585A pdb=" N CYS D2522 " --> pdb=" O ASN D2518 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N THR D2523 " --> pdb=" O ARG D2519 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N VAL D2525 " --> pdb=" O LEU D2521 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N LEU D2526 " --> pdb=" O CYS D2522 " (cutoff:3.500A) Proline residue: D2527 - end of helix Processing helix chain 'D' and resid 2537 through 2553 Processing helix chain 'D' and resid 2558 through 2576 removed outlier: 4.052A pdb=" N ILE D2570 " --> pdb=" O GLN D2566 " (cutoff:3.500A) removed outlier: 4.343A pdb=" N GLU D2571 " --> pdb=" O ARG D2567 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N VAL D2572 " --> pdb=" O ASP D2568 " (cutoff:3.500A) removed outlier: 3.864A pdb=" N CYS D2573 " --> pdb=" O SER D2569 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N LEU D2574 " --> pdb=" O ILE D2570 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N LEU D2575 " --> pdb=" O GLU D2571 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N SER D2576 " --> pdb=" O VAL D2572 " (cutoff:3.500A) Processing helix chain 'D' and resid 2583 through 2601 removed outlier: 3.823A pdb=" N GLN D2587 " --> pdb=" O PRO D2583 " (cutoff:3.500A) removed outlier: 4.299A pdb=" N HIS D2588 " --> pdb=" O SER D2584 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N VAL D2594 " --> pdb=" O LEU D2590 " (cutoff:3.500A) Proline residue: D2598 - end of helix removed outlier: 5.155A pdb=" N ASN D2601 " --> pdb=" O VAL D2597 " (cutoff:3.500A) Processing helix chain 'D' and resid 2605 through 2624 removed outlier: 3.810A pdb=" N LEU D2624 " --> pdb=" O LYS D2620 " (cutoff:3.500A) Processing helix chain 'D' and resid 2634 through 2653 removed outlier: 4.745A pdb=" N GLU D2638 " --> pdb=" O ALA D2634 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N LEU D2641 " --> pdb=" O GLU D2637 " (cutoff:3.500A) Processing helix chain 'D' and resid 2658 through 2678 removed outlier: 4.131A pdb=" N LEU D2662 " --> pdb=" O TYR D2658 " (cutoff:3.500A) removed outlier: 3.631A pdb=" N PHE D2663 " --> pdb=" O GLU D2659 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N LEU D2665 " --> pdb=" O GLU D2661 " (cutoff:3.500A) Proline residue: D2668 - end of helix removed outlier: 3.606A pdb=" N SER D2671 " --> pdb=" O LEU D2667 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N ALA D2674 " --> pdb=" O LEU D2670 " (cutoff:3.500A) Proline residue: D2678 - end of helix Processing helix chain 'D' and resid 2715 through 2741 removed outlier: 3.893A pdb=" N TYR D2720 " --> pdb=" O GLU D2716 " (cutoff:3.500A) removed outlier: 4.297A pdb=" N PHE D2721 " --> pdb=" O LYS D2717 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N ASN D2723 " --> pdb=" O GLU D2719 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N LYS D2724 " --> pdb=" O TYR D2720 " (cutoff:3.500A) removed outlier: 3.907A pdb=" N HIS D2730 " --> pdb=" O ALA D2726 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N LYS D2737 " --> pdb=" O TRP D2733 " (cutoff:3.500A) removed outlier: 3.535A pdb=" N LEU D2738 " --> pdb=" O SER D2734 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N ALA D2739 " --> pdb=" O MET D2735 " (cutoff:3.500A) removed outlier: 4.294A pdb=" N ASN D2740 " --> pdb=" O ASP D2736 " (cutoff:3.500A) Processing helix chain 'D' and resid 2765 through 2774 removed outlier: 3.959A pdb=" N GLU D2770 " --> pdb=" O GLU D2766 " (cutoff:3.500A) removed outlier: 5.600A pdb=" N ILE D2771 " --> pdb=" O LYS D2767 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N TYR D2772 " --> pdb=" O GLU D2768 " (cutoff:3.500A) Processing helix chain 'D' and resid 2775 through 2787 removed outlier: 4.245A pdb=" N SER D2779 " --> pdb=" O PRO D2775 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N LEU D2780 " --> pdb=" O ILE D2776 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N LYS D2781 " --> pdb=" O LYS D2777 " (cutoff:3.500A) removed outlier: 3.931A pdb=" N THR D2782 " --> pdb=" O GLU D2778 " (cutoff:3.500A) removed outlier: 4.181A pdb=" N TRP D2786 " --> pdb=" O THR D2782 " (cutoff:3.500A) removed outlier: 5.027A pdb=" N GLY D2787 " --> pdb=" O MET D2783 " (cutoff:3.500A) Processing helix chain 'D' and resid 2835 through 2861 removed outlier: 3.660A pdb=" N MET D2844 " --> pdb=" O ALA D2840 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N GLU D2860 " --> pdb=" O LYS D2856 " (cutoff:3.500A) Processing helix chain 'D' and resid 2881 through 2901 removed outlier: 4.934A pdb=" N ASP D2886 " --> pdb=" O GLU D2882 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N LYS D2889 " --> pdb=" O LYS D2885 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N ILE D2893 " --> pdb=" O LYS D2889 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N LEU D2894 " --> pdb=" O ALA D2890 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N PHE D2896 " --> pdb=" O ASP D2892 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N LEU D2897 " --> pdb=" O ILE D2893 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N ILE D2899 " --> pdb=" O LYS D2895 " (cutoff:3.500A) Processing helix chain 'D' and resid 2986 through 3004 Proline residue: D2990 - end of helix removed outlier: 4.127A pdb=" N ALA D2997 " --> pdb=" O SER D2993 " (cutoff:3.500A) removed outlier: 4.234A pdb=" N SER D2998 " --> pdb=" O GLY D2994 " (cutoff:3.500A) removed outlier: 4.518A pdb=" N LYS D3002 " --> pdb=" O SER D2998 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N GLU D3003 " --> pdb=" O ASN D2999 " (cutoff:3.500A) removed outlier: 4.443A pdb=" N MET D3004 " --> pdb=" O LYS D3000 " (cutoff:3.500A) Processing helix chain 'D' and resid 3010 through 3028 removed outlier: 3.509A pdb=" N LEU D3015 " --> pdb=" O LYS D3011 " (cutoff:3.500A) removed outlier: 3.643A pdb=" N ASP D3026 " --> pdb=" O LEU D3022 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N ALA D3027 " --> pdb=" O PHE D3023 " (cutoff:3.500A) Processing helix chain 'D' and resid 3035 through 3052 removed outlier: 3.511A pdb=" N THR D3040 " --> pdb=" O ILE D3036 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N LEU D3051 " --> pdb=" O MET D3047 " (cutoff:3.500A) Processing helix chain 'D' and resid 3061 through 3068 removed outlier: 3.922A pdb=" N ALA D3065 " --> pdb=" O PHE D3061 " (cutoff:3.500A) removed outlier: 4.366A pdb=" N GLU D3067 " --> pdb=" O ASP D3063 " (cutoff:3.500A) removed outlier: 5.220A pdb=" N ASP D3068 " --> pdb=" O ASN D3064 " (cutoff:3.500A) Processing helix chain 'D' and resid 3069 through 3082 Processing helix chain 'D' and resid 3099 through 3115 removed outlier: 3.747A pdb=" N LEU D3103 " --> pdb=" O THR D3099 " (cutoff:3.500A) Proline residue: D3104 - end of helix removed outlier: 3.631A pdb=" N GLU D3111 " --> pdb=" O SER D3107 " (cutoff:3.500A) removed outlier: 3.930A pdb=" N GLY D3114 " --> pdb=" O PHE D3110 " (cutoff:3.500A) removed outlier: 5.022A pdb=" N GLN D3115 " --> pdb=" O GLU D3111 " (cutoff:3.500A) Processing helix chain 'D' and resid 3124 through 3144 removed outlier: 3.589A pdb=" N TYR D3139 " --> pdb=" O LEU D3135 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N GLY D3142 " --> pdb=" O LEU D3138 " (cutoff:3.500A) Processing helix chain 'D' and resid 3149 through 3166 removed outlier: 3.932A pdb=" N ARG D3153 " --> pdb=" O VAL D3149 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N SER D3154 " --> pdb=" O GLU D3150 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N ALA D3161 " --> pdb=" O GLY D3157 " (cutoff:3.500A) removed outlier: 5.028A pdb=" N GLY D3165 " --> pdb=" O ALA D3161 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N ALA D3166 " --> pdb=" O ALA D3162 " (cutoff:3.500A) Processing helix chain 'D' and resid 3171 through 3182 removed outlier: 3.883A pdb=" N ILE D3181 " --> pdb=" O ASP D3177 " (cutoff:3.500A) removed outlier: 4.253A pdb=" N TYR D3182 " --> pdb=" O LYS D3178 " (cutoff:3.500A) Processing helix chain 'D' and resid 3591 through 3609 removed outlier: 3.615A pdb=" N LYS D3597 " --> pdb=" O SER D3593 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N ALA D3599 " --> pdb=" O GLN D3595 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N ALA D3602 " --> pdb=" O ARG D3598 " (cutoff:3.500A) removed outlier: 4.571A pdb=" N PHE D3604 " --> pdb=" O VAL D3600 " (cutoff:3.500A) removed outlier: 5.092A pdb=" N ARG D3605 " --> pdb=" O VAL D3601 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N ALA D3607 " --> pdb=" O CYS D3603 " (cutoff:3.500A) Proline residue: D3608 - end of helix Processing helix chain 'D' and resid 3613 through 3629 removed outlier: 4.077A pdb=" N LYS D3627 " --> pdb=" O GLN D3623 " (cutoff:3.500A) Processing helix chain 'D' and resid 3636 through 3647 removed outlier: 4.541A pdb=" N LYS D3640 " --> pdb=" O TYR D3636 " (cutoff:3.500A) removed outlier: 5.214A pdb=" N LYS D3647 " --> pdb=" O GLU D3643 " (cutoff:3.500A) Processing helix chain 'D' and resid 3663 through 3679 removed outlier: 3.669A pdb=" N PHE D3672 " --> pdb=" O LEU D3668 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N ARG D3674 " --> pdb=" O LEU D3670 " (cutoff:3.500A) removed outlier: 5.337A pdb=" N GLU D3679 " --> pdb=" O THR D3675 " (cutoff:3.500A) Processing helix chain 'D' and resid 3686 through 3700 removed outlier: 3.933A pdb=" N ASP D3694 " --> pdb=" O MET D3690 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N SER D3699 " --> pdb=" O ILE D3695 " (cutoff:3.500A) removed outlier: 4.528A pdb=" N CYS D3700 " --> pdb=" O MET D3696 " (cutoff:3.500A) Processing helix chain 'D' and resid 3714 through 3734 removed outlier: 3.754A pdb=" N LYS D3718 " --> pdb=" O SER D3714 " (cutoff:3.500A) removed outlier: 4.084A pdb=" N GLU D3721 " --> pdb=" O GLU D3717 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N LEU D3732 " --> pdb=" O GLN D3728 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N ASP D3734 " --> pdb=" O ALA D3730 " (cutoff:3.500A) Processing helix chain 'D' and resid 3736 through 3749 removed outlier: 3.864A pdb=" N MET D3740 " --> pdb=" O GLY D3736 " (cutoff:3.500A) removed outlier: 4.280A pdb=" N VAL D3741 " --> pdb=" O ALA D3737 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N LEU D3742 " --> pdb=" O ALA D3738 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ILE D3745 " --> pdb=" O VAL D3741 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER D3746 " --> pdb=" O LEU D3742 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N LYS D3749 " --> pdb=" O ILE D3745 " (cutoff:3.500A) Processing helix chain 'D' and resid 3753 through 3768 removed outlier: 3.579A pdb=" N THR D3759 " --> pdb=" O MET D3755 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ALA D3765 " --> pdb=" O LYS D3761 " (cutoff:3.500A) removed outlier: 3.727A pdb=" N LEU D3767 " --> pdb=" O GLY D3763 " (cutoff:3.500A) Processing helix chain 'D' and resid 3771 through 3786 removed outlier: 4.178A pdb=" N GLN D3775 " --> pdb=" O ASN D3771 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N LEU D3779 " --> pdb=" O GLN D3775 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N LYS D3786 " --> pdb=" O LEU D3782 " (cutoff:3.500A) Processing helix chain 'D' and resid 3787 through 3801 removed outlier: 4.328A pdb=" N PHE D3791 " --> pdb=" O ASP D3787 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N SER D3800 " --> pdb=" O GLY D3796 " (cutoff:3.500A) removed outlier: 4.214A pdb=" N CYS D3801 " --> pdb=" O LEU D3797 " (cutoff:3.500A) Processing helix chain 'D' and resid 3805 through 3819 removed outlier: 3.676A pdb=" N PHE D3809 " --> pdb=" O ASP D3805 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ARG D3811 " --> pdb=" O ASN D3807 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N GLN D3812 " --> pdb=" O ALA D3808 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ASN D3813 " --> pdb=" O PHE D3809 " (cutoff:3.500A) Processing helix chain 'D' and resid 3829 through 3849 removed outlier: 5.256A pdb=" N ASP D3833 " --> pdb=" O LYS D3829 " (cutoff:3.500A) removed outlier: 6.708A pdb=" N GLU D3835 " --> pdb=" O LEU D3831 " (cutoff:3.500A) removed outlier: 6.615A pdb=" N PHE D3836 " --> pdb=" O GLN D3832 " (cutoff:3.500A) removed outlier: 4.575A pdb=" N THR D3837 " --> pdb=" O ASP D3833 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N CYS D3848 " --> pdb=" O LEU D3844 " (cutoff:3.500A) Processing helix chain 'D' and resid 3852 through 3861 removed outlier: 3.794A pdb=" N ARG D3860 " --> pdb=" O GLN D3856 " (cutoff:3.500A) Processing helix chain 'D' and resid 3870 through 3894 removed outlier: 3.689A pdb=" N VAL D3876 " --> pdb=" O ILE D3872 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N LEU D3879 " --> pdb=" O THR D3875 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N ARG D3881 " --> pdb=" O ASP D3877 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N ASP D3888 " --> pdb=" O GLU D3884 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N PHE D3889 " --> pdb=" O SER D3885 " (cutoff:3.500A) Processing helix chain 'D' and resid 3900 through 3926 removed outlier: 3.549A pdb=" N ASN D3906 " --> pdb=" O GLN D3902 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ALA D3914 " --> pdb=" O ALA D3910 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N GLU D3923 " --> pdb=" O ASN D3919 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N TYR D3924 " --> pdb=" O THR D3920 " (cutoff:3.500A) removed outlier: 3.912A pdb=" N ILE D3925 " --> pdb=" O LEU D3921 " (cutoff:3.500A) Processing helix chain 'D' and resid 3929 through 3940 removed outlier: 3.750A pdb=" N GLN D3933 " --> pdb=" O CYS D3929 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N HIS D3938 " --> pdb=" O GLN D3934 " (cutoff:3.500A) removed outlier: 5.235A pdb=" N ARG D3940 " --> pdb=" O LEU D3936 " (cutoff:3.500A) Processing helix chain 'D' and resid 3941 through 3962 removed outlier: 3.747A pdb=" N HIS D3954 " --> pdb=" O HIS D3950 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N GLN D3956 " --> pdb=" O PHE D3952 " (cutoff:3.500A) removed outlier: 4.799A pdb=" N MET D3957 " --> pdb=" O ALA D3953 " (cutoff:3.500A) removed outlier: 4.126A pdb=" N GLN D3961 " --> pdb=" O MET D3957 " (cutoff:3.500A) removed outlier: 5.192A pdb=" N ASP D3962 " --> pdb=" O LYS D3958 " (cutoff:3.500A) Processing helix chain 'D' and resid 3963 through 3988 removed outlier: 5.084A pdb=" N GLU D3967 " --> pdb=" O SER D3963 " (cutoff:3.500A) removed outlier: 5.796A pdb=" N LEU D3968 " --> pdb=" O SER D3964 " (cutoff:3.500A) removed outlier: 4.078A pdb=" N GLU D3971 " --> pdb=" O GLU D3967 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N LEU D3983 " --> pdb=" O MET D3979 " (cutoff:3.500A) removed outlier: 3.536A pdb=" N LEU D3987 " --> pdb=" O LEU D3983 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N GLU D3988 " --> pdb=" O LEU D3984 " (cutoff:3.500A) Processing helix chain 'D' and resid 3994 through 4008 removed outlier: 3.649A pdb=" N ASP D4002 " --> pdb=" O LYS D3998 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N LEU D4004 " --> pdb=" O MET D4000 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N SER D4008 " --> pdb=" O LEU D4004 " (cutoff:3.500A) Processing helix chain 'D' and resid 4009 through 4030 removed outlier: 3.593A pdb=" N MET D4013 " --> pdb=" O ASN D4009 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N PHE D4021 " --> pdb=" O PHE D4017 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N SER D4030 " --> pdb=" O ASP D4026 " (cutoff:3.500A) Processing helix chain 'D' and resid 4031 through 4036 Processing helix chain 'D' and resid 4045 through 4057 removed outlier: 3.554A pdb=" N PHE D4049 " --> pdb=" O SER D4045 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N GLU D4054 " --> pdb=" O HIS D4050 " (cutoff:3.500A) removed outlier: 3.768A pdb=" N LYS D4057 " --> pdb=" O MET D4053 " (cutoff:3.500A) Processing helix chain 'D' and resid 4060 through 4071 removed outlier: 5.723A pdb=" N CYS D4070 " --> pdb=" O PHE D4066 " (cutoff:3.500A) removed outlier: 4.760A pdb=" N ALA D4071 " --> pdb=" O LEU D4067 " (cutoff:3.500A) Processing helix chain 'D' and resid 4081 through 4090 removed outlier: 4.561A pdb=" N VAL D4085 " --> pdb=" O TYR D4081 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N LYS D4086 " --> pdb=" O GLU D4082 " (cutoff:3.500A) Processing helix chain 'D' and resid 4092 through 4110 removed outlier: 5.623A pdb=" N GLY D4096 " --> pdb=" O ALA D4092 " (cutoff:3.500A) Processing helix chain 'D' and resid 4113 through 4124 removed outlier: 3.612A pdb=" N GLU D4121 " --> pdb=" O GLN D4117 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ALA D4123 " --> pdb=" O PHE D4119 " (cutoff:3.500A) Processing helix chain 'D' and resid 4125 through 4133 Proline residue: D4132 - end of helix Processing helix chain 'D' and resid 4154 through 4164 removed outlier: 3.982A pdb=" N GLU D4162 " --> pdb=" O ARG D4158 " (cutoff:3.500A) removed outlier: 4.349A pdb=" N LYS D4163 " --> pdb=" O THR D4159 " (cutoff:3.500A) Proline residue: D4164 - end of helix Processing helix chain 'D' and resid 4165 through 4180 removed outlier: 3.511A pdb=" N PHE D4173 " --> pdb=" O SER D4169 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N VAL D4178 " --> pdb=" O ILE D4174 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N ASN D4179 " --> pdb=" O PHE D4175 " (cutoff:3.500A) Processing helix chain 'D' and resid 4183 through 4207 removed outlier: 3.966A pdb=" N MET D4187 " --> pdb=" O GLU D4183 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N GLU D4188 " --> pdb=" O LYS D4184 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ASP D4196 " --> pdb=" O ASN D4192 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ILE D4198 " --> pdb=" O CYS D4194 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLN D4206 " --> pdb=" O GLN D4202 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N ILE D4207 " --> pdb=" O LEU D4203 " (cutoff:3.500A) Processing helix chain 'D' and resid 4487 through 4500 removed outlier: 3.963A pdb=" N LYS D4491 " --> pdb=" O ALA D4487 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LEU D4492 " --> pdb=" O TYR D4488 " (cutoff:3.500A) removed outlier: 4.498A pdb=" N PHE D4500 " --> pdb=" O PHE D4496 " (cutoff:3.500A) Processing helix chain 'D' and resid 4501 through 4521 removed outlier: 3.778A pdb=" N MET D4505 " --> pdb=" O TYR D4501 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N ALA D4511 " --> pdb=" O ALA D4507 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N ASN D4515 " --> pdb=" O ALA D4511 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU D4519 " --> pdb=" O ASN D4515 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N PHE D4520 " --> pdb=" O PHE D4516 " (cutoff:3.500A) removed outlier: 4.695A pdb=" N TYR D4521 " --> pdb=" O ILE D4517 " (cutoff:3.500A) Processing helix chain 'D' and resid 4569 through 4614 removed outlier: 3.955A pdb=" N ILE D4578 " --> pdb=" O ARG D4574 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N ILE D4583 " --> pdb=" O LEU D4579 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N ILE D4588 " --> pdb=" O SER D4584 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N GLY D4590 " --> pdb=" O PHE D4586 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N CYS D4593 " --> pdb=" O ILE D4589 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N LYS D4595 " --> pdb=" O TYR D4591 " (cutoff:3.500A) removed outlier: 4.619A pdb=" N VAL D4596 " --> pdb=" O TYR D4592 " (cutoff:3.500A) Proline residue: D4597 - end of helix removed outlier: 3.705A pdb=" N LYS D4610 " --> pdb=" O GLU D4606 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N LEU D4611 " --> pdb=" O VAL D4607 " (cutoff:3.500A) Processing helix chain 'D' and resid 4626 through 4639 removed outlier: 4.777A pdb=" N LEU D4634 " --> pdb=" O GLN D4630 " (cutoff:3.500A) removed outlier: 4.905A pdb=" N VAL D4635 " --> pdb=" O TRP D4631 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ILE D4636 " --> pdb=" O ASP D4632 " (cutoff:3.500A) removed outlier: 5.071A pdb=" N ASN D4637 " --> pdb=" O ARG D4633 " (cutoff:3.500A) removed outlier: 5.927A pdb=" N THR D4638 " --> pdb=" O LEU D4634 " (cutoff:3.500A) removed outlier: 5.664A pdb=" N GLN D4639 " --> pdb=" O VAL D4635 " (cutoff:3.500A) Processing helix chain 'D' and resid 4649 through 4658 removed outlier: 3.578A pdb=" N MET D4655 " --> pdb=" O LYS D4651 " (cutoff:3.500A) Processing helix chain 'D' and resid 4663 through 4672 removed outlier: 3.836A pdb=" N SER D4668 " --> pdb=" O ARG D4664 " (cutoff:3.500A) Processing helix chain 'D' and resid 4703 through 4718 removed outlier: 3.525A pdb=" N LEU D4711 " --> pdb=" O GLN D4707 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N GLY D4712 " --> pdb=" O MET D4708 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N VAL D4713 " --> pdb=" O TRP D4709 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N VAL D4714 " --> pdb=" O LYS D4710 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N THR D4716 " --> pdb=" O GLY D4712 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ASP D4717 " --> pdb=" O VAL D4713 " (cutoff:3.500A) removed outlier: 5.682A pdb=" N ASN D4718 " --> pdb=" O VAL D4714 " (cutoff:3.500A) Processing helix chain 'D' and resid 4719 through 4737 removed outlier: 3.571A pdb=" N SER D4730 " --> pdb=" O TYR D4726 " (cutoff:3.500A) Processing helix chain 'D' and resid 4744 through 4750 removed outlier: 4.618A pdb=" N ALA D4748 " --> pdb=" O LEU D4744 " (cutoff:3.500A) removed outlier: 4.117A pdb=" N MET D4749 " --> pdb=" O LEU D4745 " (cutoff:3.500A) Processing helix chain 'D' and resid 4763 through 4787 removed outlier: 4.875A pdb=" N GLN D4767 " --> pdb=" O HIS D4763 " (cutoff:3.500A) removed outlier: 4.726A pdb=" N LEU D4768 " --> pdb=" O ASN D4764 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N LEU D4770 " --> pdb=" O LYS D4766 " (cutoff:3.500A) removed outlier: 3.783A pdb=" N VAL D4779 " --> pdb=" O LEU D4775 " (cutoff:3.500A) Processing helix chain 'D' and resid 4790 through 4795 removed outlier: 3.933A pdb=" N TYR D4794 " --> pdb=" O PHE D4790 " (cutoff:3.500A) removed outlier: 5.556A pdb=" N ASN D4795 " --> pdb=" O ARG D4791 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4790 through 4795' Processing helix chain 'D' and resid 4809 through 4825 removed outlier: 4.075A pdb=" N TYR D4814 " --> pdb=" O MET D4810 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N TYR D4819 " --> pdb=" O MET D4815 " (cutoff:3.500A) removed outlier: 5.443A pdb=" N GLY D4825 " --> pdb=" O GLY D4821 " (cutoff:3.500A) Processing helix chain 'D' and resid 4827 through 4832 removed outlier: 6.033A pdb=" N GLU D4831 " --> pdb=" O GLY D4827 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N ILE D4832 " --> pdb=" O ILE D4828 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4827 through 4832' Processing helix chain 'D' and resid 4840 through 4854 removed outlier: 3.631A pdb=" N PHE D4847 " --> pdb=" O TYR D4843 " (cutoff:3.500A) Processing helix chain 'D' and resid 4858 through 4889 removed outlier: 3.765A pdb=" N ILE D4867 " --> pdb=" O ILE D4863 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N ASP D4869 " --> pdb=" O GLY D4865 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N ARG D4875 " --> pdb=" O PHE D4871 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N GLN D4880 " --> pdb=" O ASP D4876 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N LYS D4882 " --> pdb=" O GLN D4878 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N ASP D4884 " --> pdb=" O GLN D4880 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N LYS D4888 " --> pdb=" O ASP D4884 " (cutoff:3.500A) removed outlier: 5.007A pdb=" N CYS D4889 " --> pdb=" O MET D4885 " (cutoff:3.500A) Processing helix chain 'D' and resid 4895 through 4900 removed outlier: 4.070A pdb=" N PHE D4899 " --> pdb=" O GLY D4895 " (cutoff:3.500A) Processing helix chain 'D' and resid 4904 through 4912 removed outlier: 3.957A pdb=" N THR D4908 " --> pdb=" O HIS D4904 " (cutoff:3.500A) Processing helix chain 'D' and resid 4915 through 4930 removed outlier: 3.700A pdb=" N TYR D4919 " --> pdb=" O ASN D4915 " (cutoff:3.500A) removed outlier: 4.143A pdb=" N LEU D4920 " --> pdb=" O LEU D4916 " (cutoff:3.500A) removed outlier: 5.808A pdb=" N ASP D4930 " --> pdb=" O LEU D4926 " (cutoff:3.500A) Processing helix chain 'D' and resid 4935 through 4948 removed outlier: 3.682A pdb=" N TYR D4940 " --> pdb=" O GLY D4936 " (cutoff:3.500A) removed outlier: 3.745A pdb=" N TRP D4942 " --> pdb=" O GLU D4938 " (cutoff:3.500A) Processing helix chain 'D' and resid 4958 through 4964 removed outlier: 4.806A pdb=" N GLN D4962 " --> pdb=" O CYS D4958 " (cutoff:3.500A) removed outlier: 4.670A pdb=" N TYR D4963 " --> pdb=" O PHE D4959 " (cutoff:3.500A) removed outlier: 5.121A pdb=" N GLU D4964 " --> pdb=" O ARG D4960 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4958 through 4964' Processing helix chain 'D' and resid 398 through 403 removed outlier: 4.458A pdb=" N ASP D 401 " --> pdb=" O HIS D 398 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N GLY D 402 " --> pdb=" O MET D 399 " (cutoff:3.500A) removed outlier: 5.326A pdb=" N LEU D 403 " --> pdb=" O ASP D 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 398 through 403' Processing helix chain 'D' and resid 4738 through 4743 removed outlier: 5.240A pdb=" N ALA D4741 " --> pdb=" O PHE D4738 " (cutoff:3.500A) removed outlier: 4.423A pdb=" N ALA D4742 " --> pdb=" O PHE D4739 " (cutoff:3.500A) Processing helix chain 'D' and resid 54 through 59 Proline residue: D 59 - end of helix No H-bonds generated for 'chain 'D' and resid 54 through 59' Processing helix chain 'D' and resid 4615 through 4620 removed outlier: 3.568A pdb=" N GLU D4620 " --> pdb=" O GLY D4615 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4615 through 4620' Processing helix chain 'G' and resid 61 through 66 removed outlier: 5.430A pdb=" N CYS G 65 " --> pdb=" O ASP G 61 " (cutoff:3.500A) Processing helix chain 'G' and resid 74 through 84 removed outlier: 4.119A pdb=" N ASN G 84 " --> pdb=" O GLU G 80 " (cutoff:3.500A) Processing helix chain 'G' and resid 155 through 160 removed outlier: 4.753A pdb=" N TRP G 159 " --> pdb=" O GLY G 155 " (cutoff:3.500A) removed outlier: 5.632A pdb=" N TRP G 160 " --> pdb=" O GLU G 156 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 155 through 160' Processing helix chain 'G' and resid 265 through 271 removed outlier: 4.323A pdb=" N VAL G 269 " --> pdb=" O GLY G 265 " (cutoff:3.500A) removed outlier: 4.548A pdb=" N ALA G 271 " --> pdb=" O VAL G 267 " (cutoff:3.500A) Processing helix chain 'G' and resid 318 through 323 removed outlier: 3.682A pdb=" N ALA G 322 " --> pdb=" O ASP G 318 " (cutoff:3.500A) removed outlier: 4.831A pdb=" N ASP G 323 " --> pdb=" O LYS G 319 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 318 through 323' Processing helix chain 'G' and resid 409 through 438 removed outlier: 3.654A pdb=" N ARG G 420 " --> pdb=" O ALA G 416 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N SER G 421 " --> pdb=" O ARG G 417 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N PHE G 424 " --> pdb=" O ARG G 420 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N LEU G 425 " --> pdb=" O SER G 421 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N PHE G 426 " --> pdb=" O THR G 422 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N ARG G 428 " --> pdb=" O PHE G 424 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LYS G 438 " --> pdb=" O ASP G 434 " (cutoff:3.500A) Processing helix chain 'G' and resid 448 through 464 removed outlier: 5.158A pdb=" N VAL G 452 " --> pdb=" O PRO G 448 " (cutoff:3.500A) Processing helix chain 'G' and resid 471 through 493 removed outlier: 3.564A pdb=" N ASN G 477 " --> pdb=" O GLU G 473 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N PHE G 489 " --> pdb=" O ARG G 485 " (cutoff:3.500A) Processing helix chain 'G' and resid 494 through 507 removed outlier: 4.453A pdb=" N VAL G 507 " --> pdb=" O ASP G 503 " (cutoff:3.500A) Processing helix chain 'G' and resid 519 through 545 removed outlier: 4.145A pdb=" N GLY G 523 " --> pdb=" O GLY G 519 " (cutoff:3.500A) removed outlier: 5.788A pdb=" N SER G 525 " --> pdb=" O GLU G 521 " (cutoff:3.500A) removed outlier: 6.317A pdb=" N TRP G 526 " --> pdb=" O ALA G 522 " (cutoff:3.500A) removed outlier: 6.171A pdb=" N LYS G 527 " --> pdb=" O GLY G 523 " (cutoff:3.500A) removed outlier: 5.854A pdb=" N SER G 528 " --> pdb=" O GLU G 524 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N LEU G 530 " --> pdb=" O TRP G 526 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N ILE G 541 " --> pdb=" O LEU G 537 " (cutoff:3.500A) removed outlier: 4.225A pdb=" N ARG G 542 " --> pdb=" O ALA G 538 " (cutoff:3.500A) removed outlier: 4.434A pdb=" N GLY G 543 " --> pdb=" O ALA G 539 " (cutoff:3.500A) removed outlier: 5.333A pdb=" N ASN G 544 " --> pdb=" O LEU G 540 " (cutoff:3.500A) removed outlier: 5.512A pdb=" N ARG G 545 " --> pdb=" O ILE G 541 " (cutoff:3.500A) Processing helix chain 'G' and resid 546 through 552 removed outlier: 4.849A pdb=" N SER G 552 " --> pdb=" O CYS G 548 " (cutoff:3.500A) Processing helix chain 'G' and resid 553 through 563 removed outlier: 3.824A pdb=" N TRP G 557 " --> pdb=" O GLY G 553 " (cutoff:3.500A) removed outlier: 3.981A pdb=" N GLU G 563 " --> pdb=" O ILE G 559 " (cutoff:3.500A) Processing helix chain 'G' and resid 564 through 582 removed outlier: 6.757A pdb=" N SER G 568 " --> pdb=" O ARG G 564 " (cutoff:3.500A) removed outlier: 7.751A pdb=" N SER G 569 " --> pdb=" O LEU G 565 " (cutoff:3.500A) removed outlier: 7.035A pdb=" N GLY G 570 " --> pdb=" O GLU G 566 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ILE G 571 " --> pdb=" O ALA G 567 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N VAL G 574 " --> pdb=" O GLY G 570 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N LEU G 579 " --> pdb=" O LEU G 575 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N VAL G 580 " --> pdb=" O HIS G 576 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N GLU G 581 " --> pdb=" O CYS G 577 " (cutoff:3.500A) Processing helix chain 'G' and resid 583 through 590 removed outlier: 3.985A pdb=" N ASN G 587 " --> pdb=" O PRO G 583 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N ILE G 588 " --> pdb=" O GLU G 584 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N ILE G 589 " --> pdb=" O ALA G 585 " (cutoff:3.500A) removed outlier: 5.757A pdb=" N LYS G 590 " --> pdb=" O LEU G 586 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 583 through 590' Processing helix chain 'G' and resid 591 through 605 removed outlier: 3.630A pdb=" N SER G 596 " --> pdb=" O GLY G 592 " (cutoff:3.500A) Processing helix chain 'G' and resid 607 through 620 removed outlier: 3.752A pdb=" N VAL G 613 " --> pdb=" O LYS G 609 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N LEU G 614 " --> pdb=" O VAL G 610 " (cutoff:3.500A) removed outlier: 4.707A pdb=" N CYS G 620 " --> pdb=" O SER G 616 " (cutoff:3.500A) Processing helix chain 'G' and resid 625 through 636 removed outlier: 3.732A pdb=" N GLN G 629 " --> pdb=" O VAL G 625 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N CYS G 633 " --> pdb=" O GLN G 629 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N ASP G 634 " --> pdb=" O HIS G 630 " (cutoff:3.500A) Processing helix chain 'G' and resid 821 through 827 removed outlier: 4.813A pdb=" N ALA G 825 " --> pdb=" O PRO G 821 " (cutoff:3.500A) removed outlier: 4.852A pdb=" N VAL G 826 " --> pdb=" O CYS G 822 " (cutoff:3.500A) removed outlier: 5.239A pdb=" N LEU G 827 " --> pdb=" O TYR G 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 821 through 827' Processing helix chain 'G' and resid 875 through 901 removed outlier: 3.730A pdb=" N ARG G 880 " --> pdb=" O PRO G 876 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N LEU G 892 " --> pdb=" O ASN G 888 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N LYS G 897 " --> pdb=" O TRP G 893 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N LEU G 900 " --> pdb=" O ASN G 896 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLY G 901 " --> pdb=" O LYS G 897 " (cutoff:3.500A) Processing helix chain 'G' and resid 920 through 925 Proline residue: G 925 - end of helix Processing helix chain 'G' and resid 929 through 946 removed outlier: 3.511A pdb=" N MET G 935 " --> pdb=" O TYR G 931 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N SER G 936 " --> pdb=" O ASN G 932 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N LEU G 940 " --> pdb=" O SER G 936 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N THR G 942 " --> pdb=" O GLU G 938 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N LEU G 944 " --> pdb=" O LEU G 940 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N ALA G 945 " --> pdb=" O LYS G 941 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N LEU G 946 " --> pdb=" O THR G 942 " (cutoff:3.500A) Processing helix chain 'G' and resid 989 through 1012 removed outlier: 3.999A pdb=" N GLU G 993 " --> pdb=" O THR G 989 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N LEU G 999 " --> pdb=" O MET G 995 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N ALA G1000 " --> pdb=" O VAL G 996 " (cutoff:3.500A) Processing helix chain 'G' and resid 1039 through 1061 removed outlier: 4.750A pdb=" N LYS G1043 " --> pdb=" O ASP G1039 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N LYS G1044 " --> pdb=" O ASP G1040 " (cutoff:3.500A) removed outlier: 4.997A pdb=" N SER G1045 " --> pdb=" O ARG G1041 " (cutoff:3.500A) removed outlier: 5.436A pdb=" N ASN G1046 " --> pdb=" O THR G1042 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER G1049 " --> pdb=" O SER G1045 " (cutoff:3.500A) Processing helix chain 'G' and resid 1220 through 1225 removed outlier: 5.648A pdb=" N LYS G1225 " --> pdb=" O VAL G1221 " (cutoff:3.500A) Processing helix chain 'G' and resid 1230 through 1235 removed outlier: 6.809A pdb=" N GLU G1234 " --> pdb=" O CYS G1230 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N GLY G1235 " --> pdb=" O GLY G1231 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1230 through 1235' Processing helix chain 'G' and resid 1570 through 1576 removed outlier: 4.320A pdb=" N GLU G1574 " --> pdb=" O LEU G1570 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N HIS G1575 " --> pdb=" O PHE G1571 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N LYS G1576 " --> pdb=" O LYS G1572 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1570 through 1576' Processing helix chain 'G' and resid 1640 through 1648 removed outlier: 3.694A pdb=" N LEU G1644 " --> pdb=" O ASP G1640 " (cutoff:3.500A) removed outlier: 4.555A pdb=" N THR G1645 " --> pdb=" O ILE G1641 " (cutoff:3.500A) removed outlier: 5.848A pdb=" N GLU G1646 " --> pdb=" O LEU G1642 " (cutoff:3.500A) removed outlier: 4.119A pdb=" N GLN G1647 " --> pdb=" O GLU G1643 " (cutoff:3.500A) removed outlier: 4.393A pdb=" N GLU G1648 " --> pdb=" O LEU G1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1640 through 1648' Processing helix chain 'G' and resid 1649 through 1666 removed outlier: 3.737A pdb=" N CYS G1665 " --> pdb=" O TYR G1661 " (cutoff:3.500A) removed outlier: 4.579A pdb=" N ALA G1666 " --> pdb=" O SER G1662 " (cutoff:3.500A) Processing helix chain 'G' and resid 1669 through 1681 removed outlier: 3.581A pdb=" N CYS G1677 " --> pdb=" O ALA G1673 " (cutoff:3.500A) removed outlier: 4.437A pdb=" N SER G1678 " --> pdb=" O HIS G1674 " (cutoff:3.500A) removed outlier: 4.450A pdb=" N HIS G1679 " --> pdb=" O ALA G1675 " (cutoff:3.500A) Processing helix chain 'G' and resid 1682 through 1691 removed outlier: 3.609A pdb=" N ASN G1691 " --> pdb=" O TYR G1687 " (cutoff:3.500A) Processing helix chain 'G' and resid 1695 through 1710 Processing helix chain 'G' and resid 1711 through 1723 removed outlier: 3.550A pdb=" N ALA G1717 " --> pdb=" O SER G1713 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N MET G1721 " --> pdb=" O ALA G1717 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N ASN G1722 " --> pdb=" O ARG G1718 " (cutoff:3.500A) removed outlier: 5.342A pdb=" N ASN G1723 " --> pdb=" O LEU G1719 " (cutoff:3.500A) Processing helix chain 'G' and resid 1730 through 1736 removed outlier: 3.500A pdb=" N ILE G1736 " --> pdb=" O GLU G1732 " (cutoff:3.500A) Processing helix chain 'G' and resid 1771 through 1776 removed outlier: 4.275A pdb=" N TYR G1776 " --> pdb=" O ASN G1772 " (cutoff:3.500A) Processing helix chain 'G' and resid 1783 through 1802 removed outlier: 3.550A pdb=" N ALA G1789 " --> pdb=" O ASP G1785 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLU G1797 " --> pdb=" O GLN G1793 " (cutoff:3.500A) Processing helix chain 'G' and resid 1813 through 1832 removed outlier: 3.704A pdb=" N LEU G1817 " --> pdb=" O THR G1813 " (cutoff:3.500A) Proline residue: G1820 - end of helix removed outlier: 4.384A pdb=" N GLY G1832 " --> pdb=" O LEU G1828 " (cutoff:3.500A) Processing helix chain 'G' and resid 1835 through 1847 Processing helix chain 'G' and resid 1893 through 1898 removed outlier: 3.664A pdb=" N MET G1897 " --> pdb=" O GLY G1893 " (cutoff:3.500A) removed outlier: 5.588A pdb=" N LYS G1898 " --> pdb=" O LEU G1894 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1893 through 1898' Processing helix chain 'G' and resid 1900 through 1938 removed outlier: 4.179A pdb=" N LYS G1904 " --> pdb=" O PRO G1900 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N LEU G1905 " --> pdb=" O GLU G1901 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N TYR G1913 " --> pdb=" O LEU G1909 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N LEU G1914 " --> pdb=" O LEU G1910 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N ALA G1928 " --> pdb=" O GLU G1924 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N PHE G1929 " --> pdb=" O ALA G1925 " (cutoff:3.500A) removed outlier: 3.882A pdb=" N ASP G1932 " --> pdb=" O ALA G1928 " (cutoff:3.500A) Processing helix chain 'G' and resid 1940 through 1953 removed outlier: 3.529A pdb=" N ARG G1944 " --> pdb=" O ASN G1940 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N VAL G1948 " --> pdb=" O ARG G1944 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N MET G1949 " --> pdb=" O TYR G1945 " (cutoff:3.500A) removed outlier: 4.186A pdb=" N ASN G1953 " --> pdb=" O MET G1949 " (cutoff:3.500A) Processing helix chain 'G' and resid 1990 through 1997 removed outlier: 6.024A pdb=" N ARG G1994 " --> pdb=" O PRO G1990 " (cutoff:3.500A) removed outlier: 4.513A pdb=" N GLN G1996 " --> pdb=" O GLU G1992 " (cutoff:3.500A) Processing helix chain 'G' and resid 1999 through 2012 removed outlier: 4.130A pdb=" N ILE G2010 " --> pdb=" O THR G2006 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N GLU G2011 " --> pdb=" O HIS G2007 " (cutoff:3.500A) removed outlier: 4.843A pdb=" N LEU G2012 " --> pdb=" O CYS G2008 " (cutoff:3.500A) Processing helix chain 'G' and resid 2026 through 2038 removed outlier: 3.859A pdb=" N LEU G2030 " --> pdb=" O ILE G2026 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N GLU G2035 " --> pdb=" O LEU G2031 " (cutoff:3.500A) Processing helix chain 'G' and resid 2058 through 2074 removed outlier: 4.174A pdb=" N LEU G2062 " --> pdb=" O THR G2058 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N SER G2064 " --> pdb=" O GLN G2060 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N MET G2067 " --> pdb=" O ILE G2063 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N VAL G2068 " --> pdb=" O SER G2064 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N SER G2074 " --> pdb=" O TRP G2070 " (cutoff:3.500A) Processing helix chain 'G' and resid 2078 through 2095 removed outlier: 3.523A pdb=" N VAL G2082 " --> pdb=" O ASP G2078 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N VAL G2087 " --> pdb=" O ARG G2083 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N LEU G2088 " --> pdb=" O ALA G2084 " (cutoff:3.500A) Processing helix chain 'G' and resid 2096 through 2106 removed outlier: 3.502A pdb=" N ARG G2101 " --> pdb=" O GLY G2097 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N ALA G2102 " --> pdb=" O GLY G2098 " (cutoff:3.500A) removed outlier: 3.740A pdb=" N LEU G2103 " --> pdb=" O LEU G2099 " (cutoff:3.500A) Proline residue: G2104 - end of helix Processing helix chain 'G' and resid 2110 through 2132 removed outlier: 3.541A pdb=" N VAL G2114 " --> pdb=" O ASN G2110 " (cutoff:3.500A) removed outlier: 4.865A pdb=" N GLU G2115 " --> pdb=" O GLY G2111 " (cutoff:3.500A) removed outlier: 4.975A pdb=" N ASP G2116 " --> pdb=" O VAL G2112 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N ILE G2118 " --> pdb=" O VAL G2114 " (cutoff:3.500A) removed outlier: 4.103A pdb=" N ASN G2119 " --> pdb=" O GLU G2115 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N LEU G2120 " --> pdb=" O ASP G2116 " (cutoff:3.500A) removed outlier: 4.719A pdb=" N SER G2132 " --> pdb=" O ARG G2128 " (cutoff:3.500A) Processing helix chain 'G' and resid 2140 through 2153 removed outlier: 3.662A pdb=" N ARG G2145 " --> pdb=" O LYS G2141 " (cutoff:3.500A) Processing helix chain 'G' and resid 2154 through 2160 removed outlier: 4.548A pdb=" N GLN G2158 " --> pdb=" O LYS G2154 " (cutoff:3.500A) removed outlier: 5.872A pdb=" N HIS G2159 " --> pdb=" O VAL G2155 " (cutoff:3.500A) Proline residue: G2160 - end of helix No H-bonds generated for 'chain 'G' and resid 2154 through 2160' Processing helix chain 'G' and resid 2161 through 2167 Processing helix chain 'G' and resid 2168 through 2181 removed outlier: 4.619A pdb=" N GLY G2181 " --> pdb=" O VAL G2177 " (cutoff:3.500A) Processing helix chain 'G' and resid 2191 through 2209 removed outlier: 4.615A pdb=" N ALA G2195 " --> pdb=" O PRO G2191 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N ASN G2196 " --> pdb=" O LYS G2192 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N PHE G2200 " --> pdb=" O ASN G2196 " (cutoff:3.500A) removed outlier: 3.803A pdb=" N ARG G2206 " --> pdb=" O CYS G2202 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N ILE G2207 " --> pdb=" O TYR G2203 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N SER G2208 " --> pdb=" O PHE G2204 " (cutoff:3.500A) removed outlier: 5.397A pdb=" N ARG G2209 " --> pdb=" O CYS G2205 " (cutoff:3.500A) Processing helix chain 'G' and resid 2210 through 2217 removed outlier: 4.220A pdb=" N ASP G2217 " --> pdb=" O LYS G2213 " (cutoff:3.500A) Processing helix chain 'G' and resid 2218 through 2225 removed outlier: 4.769A pdb=" N GLU G2224 " --> pdb=" O SER G2220 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N ASN G2225 " --> pdb=" O TYR G2221 " (cutoff:3.500A) Processing helix chain 'G' and resid 2239 through 2249 removed outlier: 3.955A pdb=" N VAL G2243 " --> pdb=" O THR G2239 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N ALA G2244 " --> pdb=" O PRO G2240 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N ALA G2245 " --> pdb=" O LEU G2241 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N VAL G2248 " --> pdb=" O ALA G2244 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N MET G2249 " --> pdb=" O ALA G2245 " (cutoff:3.500A) Processing helix chain 'G' and resid 2251 through 2259 removed outlier: 5.639A pdb=" N ARG G2259 " --> pdb=" O ALA G2255 " (cutoff:3.500A) Processing helix chain 'G' and resid 2260 through 2274 removed outlier: 3.581A pdb=" N GLU G2264 " --> pdb=" O GLU G2260 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N LYS G2265 " --> pdb=" O PRO G2261 " (cutoff:3.500A) removed outlier: 3.660A pdb=" N CYS G2273 " --> pdb=" O TYR G2269 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N GLY G2274 " --> pdb=" O LEU G2270 " (cutoff:3.500A) Processing helix chain 'G' and resid 2295 through 2308 removed outlier: 4.730A pdb=" N TYR G2299 " --> pdb=" O GLU G2295 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N LEU G2300 " --> pdb=" O GLY G2296 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N ASP G2301 " --> pdb=" O GLU G2297 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N PHE G2308 " --> pdb=" O ARG G2304 " (cutoff:3.500A) Processing helix chain 'G' and resid 2314 through 2329 removed outlier: 4.302A pdb=" N ALA G2318 " --> pdb=" O VAL G2314 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N VAL G2320 " --> pdb=" O GLU G2316 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N VAL G2321 " --> pdb=" O ASN G2317 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N VAL G2322 " --> pdb=" O ALA G2318 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ARG G2327 " --> pdb=" O ARG G2323 " (cutoff:3.500A) Proline residue: G2329 - end of helix Processing helix chain 'G' and resid 2343 through 2354 removed outlier: 4.074A pdb=" N GLU G2349 " --> pdb=" O LEU G2345 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N GLU G2350 " --> pdb=" O ALA G2346 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N ILE G2352 " --> pdb=" O MET G2348 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N LYS G2353 " --> pdb=" O GLU G2349 " (cutoff:3.500A) Processing helix chain 'G' and resid 2387 through 2404 removed outlier: 4.261A pdb=" N THR G2391 " --> pdb=" O ASN G2387 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N ALA G2394 " --> pdb=" O MET G2390 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N LEU G2396 " --> pdb=" O PHE G2392 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N ASP G2398 " --> pdb=" O ALA G2394 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ALA G2404 " --> pdb=" O LEU G2400 " (cutoff:3.500A) Processing helix chain 'G' and resid 2408 through 2413 Processing helix chain 'G' and resid 2414 through 2429 removed outlier: 5.902A pdb=" N ILE G2418 " --> pdb=" O LYS G2414 " (cutoff:3.500A) removed outlier: 6.336A pdb=" N ARG G2419 " --> pdb=" O GLY G2415 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N ILE G2420 " --> pdb=" O GLU G2416 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N ARG G2421 " --> pdb=" O ALA G2417 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N LEU G2427 " --> pdb=" O ILE G2423 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ILE G2428 " --> pdb=" O LEU G2424 " (cutoff:3.500A) Proline residue: G2429 - end of helix Processing helix chain 'G' and resid 2432 through 2441 removed outlier: 3.524A pdb=" N SER G2438 " --> pdb=" O VAL G2434 " (cutoff:3.500A) removed outlier: 5.155A pdb=" N ILE G2439 " --> pdb=" O GLY G2435 " (cutoff:3.500A) removed outlier: 4.391A pdb=" N ALA G2440 " --> pdb=" O VAL G2436 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N PHE G2441 " --> pdb=" O ILE G2437 " (cutoff:3.500A) Processing helix chain 'G' and resid 2461 through 2476 removed outlier: 4.732A pdb=" N HIS G2465 " --> pdb=" O PHE G2461 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N LYS G2466 " --> pdb=" O CYS G2462 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N ALA G2467 " --> pdb=" O PRO G2463 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N LEU G2471 " --> pdb=" O ALA G2467 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N PHE G2472 " --> pdb=" O ALA G2468 " (cutoff:3.500A) Processing helix chain 'G' and resid 2481 through 2489 removed outlier: 3.707A pdb=" N LEU G2485 " --> pdb=" O VAL G2481 " (cutoff:3.500A) removed outlier: 4.220A pdb=" N LEU G2488 " --> pdb=" O PHE G2484 " (cutoff:3.500A) removed outlier: 5.474A pdb=" N LEU G2489 " --> pdb=" O LEU G2485 " (cutoff:3.500A) Processing helix chain 'G' and resid 2491 through 2500 Proline residue: G2495 - end of helix removed outlier: 3.802A pdb=" N ALA G2500 " --> pdb=" O ASP G2496 " (cutoff:3.500A) Processing helix chain 'G' and resid 2511 through 2528 removed outlier: 3.696A pdb=" N ASN G2518 " --> pdb=" O ALA G2514 " (cutoff:3.500A) removed outlier: 4.586A pdb=" N CYS G2522 " --> pdb=" O ASN G2518 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N THR G2523 " --> pdb=" O ARG G2519 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N VAL G2525 " --> pdb=" O LEU G2521 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N LEU G2526 " --> pdb=" O CYS G2522 " (cutoff:3.500A) Proline residue: G2527 - end of helix Processing helix chain 'G' and resid 2537 through 2553 Processing helix chain 'G' and resid 2558 through 2576 removed outlier: 4.052A pdb=" N ILE G2570 " --> pdb=" O GLN G2566 " (cutoff:3.500A) removed outlier: 4.343A pdb=" N GLU G2571 " --> pdb=" O ARG G2567 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N VAL G2572 " --> pdb=" O ASP G2568 " (cutoff:3.500A) removed outlier: 3.864A pdb=" N CYS G2573 " --> pdb=" O SER G2569 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N LEU G2574 " --> pdb=" O ILE G2570 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N LEU G2575 " --> pdb=" O GLU G2571 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N SER G2576 " --> pdb=" O VAL G2572 " (cutoff:3.500A) Processing helix chain 'G' and resid 2583 through 2601 removed outlier: 3.823A pdb=" N GLN G2587 " --> pdb=" O PRO G2583 " (cutoff:3.500A) removed outlier: 4.299A pdb=" N HIS G2588 " --> pdb=" O SER G2584 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N VAL G2594 " --> pdb=" O LEU G2590 " (cutoff:3.500A) Proline residue: G2598 - end of helix removed outlier: 5.155A pdb=" N ASN G2601 " --> pdb=" O VAL G2597 " (cutoff:3.500A) Processing helix chain 'G' and resid 2605 through 2624 removed outlier: 3.810A pdb=" N LEU G2624 " --> pdb=" O LYS G2620 " (cutoff:3.500A) Processing helix chain 'G' and resid 2634 through 2653 removed outlier: 4.745A pdb=" N GLU G2638 " --> pdb=" O ALA G2634 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N LEU G2641 " --> pdb=" O GLU G2637 " (cutoff:3.500A) Processing helix chain 'G' and resid 2658 through 2678 removed outlier: 4.131A pdb=" N LEU G2662 " --> pdb=" O TYR G2658 " (cutoff:3.500A) removed outlier: 3.631A pdb=" N PHE G2663 " --> pdb=" O GLU G2659 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N LEU G2665 " --> pdb=" O GLU G2661 " (cutoff:3.500A) Proline residue: G2668 - end of helix removed outlier: 3.607A pdb=" N SER G2671 " --> pdb=" O LEU G2667 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N ALA G2674 " --> pdb=" O LEU G2670 " (cutoff:3.500A) Proline residue: G2678 - end of helix Processing helix chain 'G' and resid 2715 through 2741 removed outlier: 3.893A pdb=" N TYR G2720 " --> pdb=" O GLU G2716 " (cutoff:3.500A) removed outlier: 4.297A pdb=" N PHE G2721 " --> pdb=" O LYS G2717 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N ASN G2723 " --> pdb=" O GLU G2719 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N LYS G2724 " --> pdb=" O TYR G2720 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N HIS G2730 " --> pdb=" O ALA G2726 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N LYS G2737 " --> pdb=" O TRP G2733 " (cutoff:3.500A) removed outlier: 3.535A pdb=" N LEU G2738 " --> pdb=" O SER G2734 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N ALA G2739 " --> pdb=" O MET G2735 " (cutoff:3.500A) removed outlier: 4.294A pdb=" N ASN G2740 " --> pdb=" O ASP G2736 " (cutoff:3.500A) Processing helix chain 'G' and resid 2765 through 2774 removed outlier: 3.959A pdb=" N GLU G2770 " --> pdb=" O GLU G2766 " (cutoff:3.500A) removed outlier: 5.600A pdb=" N ILE G2771 " --> pdb=" O LYS G2767 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N TYR G2772 " --> pdb=" O GLU G2768 " (cutoff:3.500A) Processing helix chain 'G' and resid 2775 through 2787 removed outlier: 4.244A pdb=" N SER G2779 " --> pdb=" O PRO G2775 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N LEU G2780 " --> pdb=" O ILE G2776 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N LYS G2781 " --> pdb=" O LYS G2777 " (cutoff:3.500A) removed outlier: 3.931A pdb=" N THR G2782 " --> pdb=" O GLU G2778 " (cutoff:3.500A) removed outlier: 4.181A pdb=" N TRP G2786 " --> pdb=" O THR G2782 " (cutoff:3.500A) removed outlier: 5.027A pdb=" N GLY G2787 " --> pdb=" O MET G2783 " (cutoff:3.500A) Processing helix chain 'G' and resid 2835 through 2861 removed outlier: 3.660A pdb=" N MET G2844 " --> pdb=" O ALA G2840 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N GLU G2860 " --> pdb=" O LYS G2856 " (cutoff:3.500A) Processing helix chain 'G' and resid 2881 through 2901 removed outlier: 4.934A pdb=" N ASP G2886 " --> pdb=" O GLU G2882 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N LYS G2889 " --> pdb=" O LYS G2885 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N ILE G2893 " --> pdb=" O LYS G2889 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N LEU G2894 " --> pdb=" O ALA G2890 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N PHE G2896 " --> pdb=" O ASP G2892 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N LEU G2897 " --> pdb=" O ILE G2893 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N ILE G2899 " --> pdb=" O LYS G2895 " (cutoff:3.500A) Processing helix chain 'G' and resid 2986 through 3004 Proline residue: G2990 - end of helix removed outlier: 4.126A pdb=" N ALA G2997 " --> pdb=" O SER G2993 " (cutoff:3.500A) removed outlier: 4.233A pdb=" N SER G2998 " --> pdb=" O GLY G2994 " (cutoff:3.500A) removed outlier: 4.518A pdb=" N LYS G3002 " --> pdb=" O SER G2998 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N GLU G3003 " --> pdb=" O ASN G2999 " (cutoff:3.500A) removed outlier: 4.443A pdb=" N MET G3004 " --> pdb=" O LYS G3000 " (cutoff:3.500A) Processing helix chain 'G' and resid 3010 through 3028 removed outlier: 3.509A pdb=" N LEU G3015 " --> pdb=" O LYS G3011 " (cutoff:3.500A) removed outlier: 3.643A pdb=" N ASP G3026 " --> pdb=" O LEU G3022 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N ALA G3027 " --> pdb=" O PHE G3023 " (cutoff:3.500A) Processing helix chain 'G' and resid 3035 through 3052 removed outlier: 3.511A pdb=" N THR G3040 " --> pdb=" O ILE G3036 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N LEU G3051 " --> pdb=" O MET G3047 " (cutoff:3.500A) Processing helix chain 'G' and resid 3061 through 3068 removed outlier: 3.922A pdb=" N ALA G3065 " --> pdb=" O PHE G3061 " (cutoff:3.500A) removed outlier: 4.366A pdb=" N GLU G3067 " --> pdb=" O ASP G3063 " (cutoff:3.500A) removed outlier: 5.220A pdb=" N ASP G3068 " --> pdb=" O ASN G3064 " (cutoff:3.500A) Processing helix chain 'G' and resid 3069 through 3082 Processing helix chain 'G' and resid 3099 through 3115 removed outlier: 3.747A pdb=" N LEU G3103 " --> pdb=" O THR G3099 " (cutoff:3.500A) Proline residue: G3104 - end of helix removed outlier: 3.631A pdb=" N GLU G3111 " --> pdb=" O SER G3107 " (cutoff:3.500A) removed outlier: 3.930A pdb=" N GLY G3114 " --> pdb=" O PHE G3110 " (cutoff:3.500A) removed outlier: 5.022A pdb=" N GLN G3115 " --> pdb=" O GLU G3111 " (cutoff:3.500A) Processing helix chain 'G' and resid 3124 through 3144 removed outlier: 3.588A pdb=" N TYR G3139 " --> pdb=" O LEU G3135 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N GLY G3142 " --> pdb=" O LEU G3138 " (cutoff:3.500A) Processing helix chain 'G' and resid 3149 through 3166 removed outlier: 3.932A pdb=" N ARG G3153 " --> pdb=" O VAL G3149 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N SER G3154 " --> pdb=" O GLU G3150 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N ALA G3161 " --> pdb=" O GLY G3157 " (cutoff:3.500A) removed outlier: 5.028A pdb=" N GLY G3165 " --> pdb=" O ALA G3161 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N ALA G3166 " --> pdb=" O ALA G3162 " (cutoff:3.500A) Processing helix chain 'G' and resid 3171 through 3182 removed outlier: 3.883A pdb=" N ILE G3181 " --> pdb=" O ASP G3177 " (cutoff:3.500A) removed outlier: 4.254A pdb=" N TYR G3182 " --> pdb=" O LYS G3178 " (cutoff:3.500A) Processing helix chain 'G' and resid 3591 through 3609 removed outlier: 3.614A pdb=" N LYS G3597 " --> pdb=" O SER G3593 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N ALA G3599 " --> pdb=" O GLN G3595 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N ALA G3602 " --> pdb=" O ARG G3598 " (cutoff:3.500A) removed outlier: 4.571A pdb=" N PHE G3604 " --> pdb=" O VAL G3600 " (cutoff:3.500A) removed outlier: 5.092A pdb=" N ARG G3605 " --> pdb=" O VAL G3601 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N ALA G3607 " --> pdb=" O CYS G3603 " (cutoff:3.500A) Proline residue: G3608 - end of helix Processing helix chain 'G' and resid 3613 through 3629 removed outlier: 4.077A pdb=" N LYS G3627 " --> pdb=" O GLN G3623 " (cutoff:3.500A) Processing helix chain 'G' and resid 3636 through 3647 removed outlier: 4.541A pdb=" N LYS G3640 " --> pdb=" O TYR G3636 " (cutoff:3.500A) removed outlier: 5.214A pdb=" N LYS G3647 " --> pdb=" O GLU G3643 " (cutoff:3.500A) Processing helix chain 'G' and resid 3663 through 3679 removed outlier: 3.669A pdb=" N PHE G3672 " --> pdb=" O LEU G3668 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N ARG G3674 " --> pdb=" O LEU G3670 " (cutoff:3.500A) removed outlier: 5.337A pdb=" N GLU G3679 " --> pdb=" O THR G3675 " (cutoff:3.500A) Processing helix chain 'G' and resid 3686 through 3700 removed outlier: 3.932A pdb=" N ASP G3694 " --> pdb=" O MET G3690 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N SER G3699 " --> pdb=" O ILE G3695 " (cutoff:3.500A) removed outlier: 4.528A pdb=" N CYS G3700 " --> pdb=" O MET G3696 " (cutoff:3.500A) Processing helix chain 'G' and resid 3714 through 3734 removed outlier: 3.754A pdb=" N LYS G3718 " --> pdb=" O SER G3714 " (cutoff:3.500A) removed outlier: 4.084A pdb=" N GLU G3721 " --> pdb=" O GLU G3717 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N LEU G3732 " --> pdb=" O GLN G3728 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N ASP G3734 " --> pdb=" O ALA G3730 " (cutoff:3.500A) Processing helix chain 'G' and resid 3736 through 3749 removed outlier: 3.864A pdb=" N MET G3740 " --> pdb=" O GLY G3736 " (cutoff:3.500A) removed outlier: 4.280A pdb=" N VAL G3741 " --> pdb=" O ALA G3737 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N LEU G3742 " --> pdb=" O ALA G3738 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ILE G3745 " --> pdb=" O VAL G3741 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER G3746 " --> pdb=" O LEU G3742 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N LYS G3749 " --> pdb=" O ILE G3745 " (cutoff:3.500A) Processing helix chain 'G' and resid 3753 through 3768 removed outlier: 3.579A pdb=" N THR G3759 " --> pdb=" O MET G3755 " (cutoff:3.500A) removed outlier: 3.745A pdb=" N ALA G3765 " --> pdb=" O LYS G3761 " (cutoff:3.500A) removed outlier: 3.727A pdb=" N LEU G3767 " --> pdb=" O GLY G3763 " (cutoff:3.500A) Processing helix chain 'G' and resid 3771 through 3786 removed outlier: 4.178A pdb=" N GLN G3775 " --> pdb=" O ASN G3771 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N LEU G3779 " --> pdb=" O GLN G3775 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N LYS G3786 " --> pdb=" O LEU G3782 " (cutoff:3.500A) Processing helix chain 'G' and resid 3787 through 3801 removed outlier: 4.328A pdb=" N PHE G3791 " --> pdb=" O ASP G3787 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N SER G3800 " --> pdb=" O GLY G3796 " (cutoff:3.500A) removed outlier: 4.214A pdb=" N CYS G3801 " --> pdb=" O LEU G3797 " (cutoff:3.500A) Processing helix chain 'G' and resid 3805 through 3819 removed outlier: 3.676A pdb=" N PHE G3809 " --> pdb=" O ASP G3805 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ARG G3811 " --> pdb=" O ASN G3807 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N GLN G3812 " --> pdb=" O ALA G3808 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ASN G3813 " --> pdb=" O PHE G3809 " (cutoff:3.500A) Processing helix chain 'G' and resid 3829 through 3849 removed outlier: 5.256A pdb=" N ASP G3833 " --> pdb=" O LYS G3829 " (cutoff:3.500A) removed outlier: 6.707A pdb=" N GLU G3835 " --> pdb=" O LEU G3831 " (cutoff:3.500A) removed outlier: 6.616A pdb=" N PHE G3836 " --> pdb=" O GLN G3832 " (cutoff:3.500A) removed outlier: 4.576A pdb=" N THR G3837 " --> pdb=" O ASP G3833 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N CYS G3848 " --> pdb=" O LEU G3844 " (cutoff:3.500A) Processing helix chain 'G' and resid 3852 through 3861 removed outlier: 3.794A pdb=" N ARG G3860 " --> pdb=" O GLN G3856 " (cutoff:3.500A) Processing helix chain 'G' and resid 3870 through 3894 removed outlier: 3.689A pdb=" N VAL G3876 " --> pdb=" O ILE G3872 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N LEU G3879 " --> pdb=" O THR G3875 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N ARG G3881 " --> pdb=" O ASP G3877 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N ASP G3888 " --> pdb=" O GLU G3884 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N PHE G3889 " --> pdb=" O SER G3885 " (cutoff:3.500A) Processing helix chain 'G' and resid 3900 through 3926 removed outlier: 3.549A pdb=" N ASN G3906 " --> pdb=" O GLN G3902 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ALA G3914 " --> pdb=" O ALA G3910 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N GLU G3923 " --> pdb=" O ASN G3919 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N TYR G3924 " --> pdb=" O THR G3920 " (cutoff:3.500A) removed outlier: 3.912A pdb=" N ILE G3925 " --> pdb=" O LEU G3921 " (cutoff:3.500A) Processing helix chain 'G' and resid 3929 through 3940 removed outlier: 3.750A pdb=" N GLN G3933 " --> pdb=" O CYS G3929 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N HIS G3938 " --> pdb=" O GLN G3934 " (cutoff:3.500A) removed outlier: 5.234A pdb=" N ARG G3940 " --> pdb=" O LEU G3936 " (cutoff:3.500A) Processing helix chain 'G' and resid 3941 through 3962 removed outlier: 3.747A pdb=" N HIS G3954 " --> pdb=" O HIS G3950 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N GLN G3956 " --> pdb=" O PHE G3952 " (cutoff:3.500A) removed outlier: 4.798A pdb=" N MET G3957 " --> pdb=" O ALA G3953 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N GLN G3961 " --> pdb=" O MET G3957 " (cutoff:3.500A) removed outlier: 5.192A pdb=" N ASP G3962 " --> pdb=" O LYS G3958 " (cutoff:3.500A) Processing helix chain 'G' and resid 3963 through 3988 removed outlier: 5.084A pdb=" N GLU G3967 " --> pdb=" O SER G3963 " (cutoff:3.500A) removed outlier: 5.796A pdb=" N LEU G3968 " --> pdb=" O SER G3964 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N GLU G3971 " --> pdb=" O GLU G3967 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N LEU G3983 " --> pdb=" O MET G3979 " (cutoff:3.500A) removed outlier: 3.536A pdb=" N LEU G3987 " --> pdb=" O LEU G3983 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N GLU G3988 " --> pdb=" O LEU G3984 " (cutoff:3.500A) Processing helix chain 'G' and resid 3994 through 4008 removed outlier: 3.649A pdb=" N ASP G4002 " --> pdb=" O LYS G3998 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N LEU G4004 " --> pdb=" O MET G4000 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N SER G4008 " --> pdb=" O LEU G4004 " (cutoff:3.500A) Processing helix chain 'G' and resid 4009 through 4030 removed outlier: 3.593A pdb=" N MET G4013 " --> pdb=" O ASN G4009 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N PHE G4021 " --> pdb=" O PHE G4017 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N SER G4030 " --> pdb=" O ASP G4026 " (cutoff:3.500A) Processing helix chain 'G' and resid 4031 through 4036 Processing helix chain 'G' and resid 4045 through 4057 removed outlier: 3.554A pdb=" N PHE G4049 " --> pdb=" O SER G4045 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N GLU G4054 " --> pdb=" O HIS G4050 " (cutoff:3.500A) removed outlier: 3.768A pdb=" N LYS G4057 " --> pdb=" O MET G4053 " (cutoff:3.500A) Processing helix chain 'G' and resid 4060 through 4071 removed outlier: 5.723A pdb=" N CYS G4070 " --> pdb=" O PHE G4066 " (cutoff:3.500A) removed outlier: 4.760A pdb=" N ALA G4071 " --> pdb=" O LEU G4067 " (cutoff:3.500A) Processing helix chain 'G' and resid 4081 through 4090 removed outlier: 4.562A pdb=" N VAL G4085 " --> pdb=" O TYR G4081 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N LYS G4086 " --> pdb=" O GLU G4082 " (cutoff:3.500A) Processing helix chain 'G' and resid 4092 through 4110 removed outlier: 5.624A pdb=" N GLY G4096 " --> pdb=" O ALA G4092 " (cutoff:3.500A) Processing helix chain 'G' and resid 4113 through 4124 removed outlier: 3.612A pdb=" N GLU G4121 " --> pdb=" O GLN G4117 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ALA G4123 " --> pdb=" O PHE G4119 " (cutoff:3.500A) Processing helix chain 'G' and resid 4125 through 4133 Proline residue: G4132 - end of helix Processing helix chain 'G' and resid 4154 through 4164 removed outlier: 3.982A pdb=" N GLU G4162 " --> pdb=" O ARG G4158 " (cutoff:3.500A) removed outlier: 4.349A pdb=" N LYS G4163 " --> pdb=" O THR G4159 " (cutoff:3.500A) Proline residue: G4164 - end of helix Processing helix chain 'G' and resid 4165 through 4180 removed outlier: 3.511A pdb=" N PHE G4173 " --> pdb=" O SER G4169 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N VAL G4178 " --> pdb=" O ILE G4174 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N ASN G4179 " --> pdb=" O PHE G4175 " (cutoff:3.500A) Processing helix chain 'G' and resid 4183 through 4207 removed outlier: 3.966A pdb=" N MET G4187 " --> pdb=" O GLU G4183 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N GLU G4188 " --> pdb=" O LYS G4184 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ASP G4196 " --> pdb=" O ASN G4192 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ILE G4198 " --> pdb=" O CYS G4194 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLN G4206 " --> pdb=" O GLN G4202 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N ILE G4207 " --> pdb=" O LEU G4203 " (cutoff:3.500A) Processing helix chain 'G' and resid 4487 through 4500 removed outlier: 3.963A pdb=" N LYS G4491 " --> pdb=" O ALA G4487 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LEU G4492 " --> pdb=" O TYR G4488 " (cutoff:3.500A) removed outlier: 4.498A pdb=" N PHE G4500 " --> pdb=" O PHE G4496 " (cutoff:3.500A) Processing helix chain 'G' and resid 4501 through 4521 removed outlier: 3.778A pdb=" N MET G4505 " --> pdb=" O TYR G4501 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N ALA G4511 " --> pdb=" O ALA G4507 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N ASN G4515 " --> pdb=" O ALA G4511 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU G4519 " --> pdb=" O ASN G4515 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N PHE G4520 " --> pdb=" O PHE G4516 " (cutoff:3.500A) removed outlier: 4.694A pdb=" N TYR G4521 " --> pdb=" O ILE G4517 " (cutoff:3.500A) Processing helix chain 'G' and resid 4569 through 4614 removed outlier: 3.955A pdb=" N ILE G4578 " --> pdb=" O ARG G4574 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N ILE G4583 " --> pdb=" O LEU G4579 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N ILE G4588 " --> pdb=" O SER G4584 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N GLY G4590 " --> pdb=" O PHE G4586 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N CYS G4593 " --> pdb=" O ILE G4589 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N LYS G4595 " --> pdb=" O TYR G4591 " (cutoff:3.500A) removed outlier: 4.619A pdb=" N VAL G4596 " --> pdb=" O TYR G4592 " (cutoff:3.500A) Proline residue: G4597 - end of helix removed outlier: 3.705A pdb=" N LYS G4610 " --> pdb=" O GLU G4606 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N LEU G4611 " --> pdb=" O VAL G4607 " (cutoff:3.500A) Processing helix chain 'G' and resid 4626 through 4639 removed outlier: 4.777A pdb=" N LEU G4634 " --> pdb=" O GLN G4630 " (cutoff:3.500A) removed outlier: 4.905A pdb=" N VAL G4635 " --> pdb=" O TRP G4631 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ILE G4636 " --> pdb=" O ASP G4632 " (cutoff:3.500A) removed outlier: 5.070A pdb=" N ASN G4637 " --> pdb=" O ARG G4633 " (cutoff:3.500A) removed outlier: 5.926A pdb=" N THR G4638 " --> pdb=" O LEU G4634 " (cutoff:3.500A) removed outlier: 5.664A pdb=" N GLN G4639 " --> pdb=" O VAL G4635 " (cutoff:3.500A) Processing helix chain 'G' and resid 4649 through 4658 removed outlier: 3.578A pdb=" N MET G4655 " --> pdb=" O LYS G4651 " (cutoff:3.500A) Processing helix chain 'G' and resid 4663 through 4672 removed outlier: 3.836A pdb=" N SER G4668 " --> pdb=" O ARG G4664 " (cutoff:3.500A) Processing helix chain 'G' and resid 4703 through 4718 removed outlier: 3.525A pdb=" N LEU G4711 " --> pdb=" O GLN G4707 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N GLY G4712 " --> pdb=" O MET G4708 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N VAL G4713 " --> pdb=" O TRP G4709 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N VAL G4714 " --> pdb=" O LYS G4710 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N THR G4716 " --> pdb=" O GLY G4712 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ASP G4717 " --> pdb=" O VAL G4713 " (cutoff:3.500A) removed outlier: 5.682A pdb=" N ASN G4718 " --> pdb=" O VAL G4714 " (cutoff:3.500A) Processing helix chain 'G' and resid 4719 through 4737 removed outlier: 3.571A pdb=" N SER G4730 " --> pdb=" O TYR G4726 " (cutoff:3.500A) Processing helix chain 'G' and resid 4744 through 4750 removed outlier: 4.618A pdb=" N ALA G4748 " --> pdb=" O LEU G4744 " (cutoff:3.500A) removed outlier: 4.117A pdb=" N MET G4749 " --> pdb=" O LEU G4745 " (cutoff:3.500A) Processing helix chain 'G' and resid 4763 through 4787 removed outlier: 4.875A pdb=" N GLN G4767 " --> pdb=" O HIS G4763 " (cutoff:3.500A) removed outlier: 4.726A pdb=" N LEU G4768 " --> pdb=" O ASN G4764 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N LEU G4770 " --> pdb=" O LYS G4766 " (cutoff:3.500A) removed outlier: 3.784A pdb=" N VAL G4779 " --> pdb=" O LEU G4775 " (cutoff:3.500A) Processing helix chain 'G' and resid 4790 through 4795 removed outlier: 3.933A pdb=" N TYR G4794 " --> pdb=" O PHE G4790 " (cutoff:3.500A) removed outlier: 5.555A pdb=" N ASN G4795 " --> pdb=" O ARG G4791 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4790 through 4795' Processing helix chain 'G' and resid 4809 through 4825 removed outlier: 4.076A pdb=" N TYR G4814 " --> pdb=" O MET G4810 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N TYR G4819 " --> pdb=" O MET G4815 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N ALA G4824 " --> pdb=" O VAL G4820 " (cutoff:3.500A) removed outlier: 4.309A pdb=" N GLY G4825 " --> pdb=" O GLY G4821 " (cutoff:3.500A) Processing helix chain 'G' and resid 4827 through 4832 removed outlier: 6.033A pdb=" N GLU G4831 " --> pdb=" O GLY G4827 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N ILE G4832 " --> pdb=" O ILE G4828 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4827 through 4832' Processing helix chain 'G' and resid 4840 through 4854 removed outlier: 3.630A pdb=" N PHE G4847 " --> pdb=" O TYR G4843 " (cutoff:3.500A) Processing helix chain 'G' and resid 4858 through 4889 removed outlier: 3.765A pdb=" N ILE G4867 " --> pdb=" O ILE G4863 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N ASP G4869 " --> pdb=" O GLY G4865 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N ARG G4875 " --> pdb=" O PHE G4871 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N GLN G4880 " --> pdb=" O ASP G4876 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N LYS G4882 " --> pdb=" O GLN G4878 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N ASP G4884 " --> pdb=" O GLN G4880 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N LYS G4888 " --> pdb=" O ASP G4884 " (cutoff:3.500A) removed outlier: 5.007A pdb=" N CYS G4889 " --> pdb=" O MET G4885 " (cutoff:3.500A) Processing helix chain 'G' and resid 4895 through 4900 removed outlier: 4.069A pdb=" N PHE G4899 " --> pdb=" O GLY G4895 " (cutoff:3.500A) Processing helix chain 'G' and resid 4904 through 4912 removed outlier: 3.957A pdb=" N THR G4908 " --> pdb=" O HIS G4904 " (cutoff:3.500A) Processing helix chain 'G' and resid 4915 through 4930 removed outlier: 3.700A pdb=" N TYR G4919 " --> pdb=" O ASN G4915 " (cutoff:3.500A) removed outlier: 4.142A pdb=" N LEU G4920 " --> pdb=" O LEU G4916 " (cutoff:3.500A) removed outlier: 5.809A pdb=" N ASP G4930 " --> pdb=" O LEU G4926 " (cutoff:3.500A) Processing helix chain 'G' and resid 4935 through 4948 removed outlier: 3.682A pdb=" N TYR G4940 " --> pdb=" O GLY G4936 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N TRP G4942 " --> pdb=" O GLU G4938 " (cutoff:3.500A) Processing helix chain 'G' and resid 4958 through 4964 removed outlier: 4.807A pdb=" N GLN G4962 " --> pdb=" O CYS G4958 " (cutoff:3.500A) removed outlier: 4.670A pdb=" N TYR G4963 " --> pdb=" O PHE G4959 " (cutoff:3.500A) removed outlier: 5.120A pdb=" N GLU G4964 " --> pdb=" O ARG G4960 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4958 through 4964' Processing helix chain 'G' and resid 398 through 403 removed outlier: 4.458A pdb=" N ASP G 401 " --> pdb=" O HIS G 398 " (cutoff:3.500A) removed outlier: 4.910A pdb=" N GLY G 402 " --> pdb=" O MET G 399 " (cutoff:3.500A) removed outlier: 5.327A pdb=" N LEU G 403 " --> pdb=" O ASP G 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 398 through 403' Processing helix chain 'G' and resid 4738 through 4743 removed outlier: 5.240A pdb=" N ALA G4741 " --> pdb=" O PHE G4738 " (cutoff:3.500A) removed outlier: 4.424A pdb=" N ALA G4742 " --> pdb=" O PHE G4739 " (cutoff:3.500A) Processing helix chain 'G' and resid 54 through 59 Proline residue: G 59 - end of helix No H-bonds generated for 'chain 'G' and resid 54 through 59' Processing helix chain 'G' and resid 4615 through 4620 removed outlier: 3.568A pdb=" N GLU G4620 " --> pdb=" O GLY G4615 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4615 through 4620' Processing helix chain 'J' and resid 61 through 66 removed outlier: 5.430A pdb=" N CYS J 65 " --> pdb=" O ASP J 61 " (cutoff:3.500A) Processing helix chain 'J' and resid 74 through 84 removed outlier: 4.119A pdb=" N ASN J 84 " --> pdb=" O GLU J 80 " (cutoff:3.500A) Processing helix chain 'J' and resid 155 through 160 removed outlier: 4.753A pdb=" N TRP J 159 " --> pdb=" O GLY J 155 " (cutoff:3.500A) removed outlier: 5.632A pdb=" N TRP J 160 " --> pdb=" O GLU J 156 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 155 through 160' Processing helix chain 'J' and resid 265 through 271 removed outlier: 4.323A pdb=" N VAL J 269 " --> pdb=" O GLY J 265 " (cutoff:3.500A) removed outlier: 4.548A pdb=" N ALA J 271 " --> pdb=" O VAL J 267 " (cutoff:3.500A) Processing helix chain 'J' and resid 318 through 323 removed outlier: 3.682A pdb=" N ALA J 322 " --> pdb=" O ASP J 318 " (cutoff:3.500A) removed outlier: 4.831A pdb=" N ASP J 323 " --> pdb=" O LYS J 319 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 318 through 323' Processing helix chain 'J' and resid 409 through 438 removed outlier: 3.654A pdb=" N ARG J 420 " --> pdb=" O ALA J 416 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N SER J 421 " --> pdb=" O ARG J 417 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N PHE J 424 " --> pdb=" O ARG J 420 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N LEU J 425 " --> pdb=" O SER J 421 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N PHE J 426 " --> pdb=" O THR J 422 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N ARG J 428 " --> pdb=" O PHE J 424 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LYS J 438 " --> pdb=" O ASP J 434 " (cutoff:3.500A) Processing helix chain 'J' and resid 448 through 464 removed outlier: 5.158A pdb=" N VAL J 452 " --> pdb=" O PRO J 448 " (cutoff:3.500A) Processing helix chain 'J' and resid 471 through 493 removed outlier: 3.564A pdb=" N ASN J 477 " --> pdb=" O GLU J 473 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N PHE J 489 " --> pdb=" O ARG J 485 " (cutoff:3.500A) Processing helix chain 'J' and resid 494 through 507 removed outlier: 4.453A pdb=" N VAL J 507 " --> pdb=" O ASP J 503 " (cutoff:3.500A) Processing helix chain 'J' and resid 519 through 545 removed outlier: 4.145A pdb=" N GLY J 523 " --> pdb=" O GLY J 519 " (cutoff:3.500A) removed outlier: 5.788A pdb=" N SER J 525 " --> pdb=" O GLU J 521 " (cutoff:3.500A) removed outlier: 6.317A pdb=" N TRP J 526 " --> pdb=" O ALA J 522 " (cutoff:3.500A) removed outlier: 6.171A pdb=" N LYS J 527 " --> pdb=" O GLY J 523 " (cutoff:3.500A) removed outlier: 5.854A pdb=" N SER J 528 " --> pdb=" O GLU J 524 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N LEU J 530 " --> pdb=" O TRP J 526 " (cutoff:3.500A) removed outlier: 3.836A pdb=" N ILE J 541 " --> pdb=" O LEU J 537 " (cutoff:3.500A) removed outlier: 4.225A pdb=" N ARG J 542 " --> pdb=" O ALA J 538 " (cutoff:3.500A) removed outlier: 4.434A pdb=" N GLY J 543 " --> pdb=" O ALA J 539 " (cutoff:3.500A) removed outlier: 5.333A pdb=" N ASN J 544 " --> pdb=" O LEU J 540 " (cutoff:3.500A) removed outlier: 5.511A pdb=" N ARG J 545 " --> pdb=" O ILE J 541 " (cutoff:3.500A) Processing helix chain 'J' and resid 546 through 552 removed outlier: 4.848A pdb=" N SER J 552 " --> pdb=" O CYS J 548 " (cutoff:3.500A) Processing helix chain 'J' and resid 553 through 563 removed outlier: 3.824A pdb=" N TRP J 557 " --> pdb=" O GLY J 553 " (cutoff:3.500A) removed outlier: 3.981A pdb=" N GLU J 563 " --> pdb=" O ILE J 559 " (cutoff:3.500A) Processing helix chain 'J' and resid 564 through 582 removed outlier: 6.757A pdb=" N SER J 568 " --> pdb=" O ARG J 564 " (cutoff:3.500A) removed outlier: 7.750A pdb=" N SER J 569 " --> pdb=" O LEU J 565 " (cutoff:3.500A) removed outlier: 7.035A pdb=" N GLY J 570 " --> pdb=" O GLU J 566 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ILE J 571 " --> pdb=" O ALA J 567 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N VAL J 574 " --> pdb=" O GLY J 570 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N LEU J 579 " --> pdb=" O LEU J 575 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N VAL J 580 " --> pdb=" O HIS J 576 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N GLU J 581 " --> pdb=" O CYS J 577 " (cutoff:3.500A) Processing helix chain 'J' and resid 583 through 590 removed outlier: 3.985A pdb=" N ASN J 587 " --> pdb=" O PRO J 583 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ILE J 588 " --> pdb=" O GLU J 584 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N ILE J 589 " --> pdb=" O ALA J 585 " (cutoff:3.500A) removed outlier: 5.757A pdb=" N LYS J 590 " --> pdb=" O LEU J 586 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 583 through 590' Processing helix chain 'J' and resid 591 through 605 removed outlier: 3.630A pdb=" N SER J 596 " --> pdb=" O GLY J 592 " (cutoff:3.500A) Processing helix chain 'J' and resid 607 through 620 removed outlier: 3.752A pdb=" N VAL J 613 " --> pdb=" O LYS J 609 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N LEU J 614 " --> pdb=" O VAL J 610 " (cutoff:3.500A) removed outlier: 4.707A pdb=" N CYS J 620 " --> pdb=" O SER J 616 " (cutoff:3.500A) Processing helix chain 'J' and resid 625 through 636 removed outlier: 3.731A pdb=" N GLN J 629 " --> pdb=" O VAL J 625 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N CYS J 633 " --> pdb=" O GLN J 629 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N ASP J 634 " --> pdb=" O HIS J 630 " (cutoff:3.500A) Processing helix chain 'J' and resid 821 through 827 removed outlier: 4.812A pdb=" N ALA J 825 " --> pdb=" O PRO J 821 " (cutoff:3.500A) removed outlier: 4.852A pdb=" N VAL J 826 " --> pdb=" O CYS J 822 " (cutoff:3.500A) removed outlier: 5.239A pdb=" N LEU J 827 " --> pdb=" O TYR J 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 821 through 827' Processing helix chain 'J' and resid 875 through 901 removed outlier: 3.730A pdb=" N ARG J 880 " --> pdb=" O PRO J 876 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N LEU J 892 " --> pdb=" O ASN J 888 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N LYS J 897 " --> pdb=" O TRP J 893 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N LEU J 900 " --> pdb=" O ASN J 896 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLY J 901 " --> pdb=" O LYS J 897 " (cutoff:3.500A) Processing helix chain 'J' and resid 920 through 925 Proline residue: J 925 - end of helix Processing helix chain 'J' and resid 929 through 946 removed outlier: 3.511A pdb=" N MET J 935 " --> pdb=" O TYR J 931 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N SER J 936 " --> pdb=" O ASN J 932 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N LEU J 940 " --> pdb=" O SER J 936 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N THR J 942 " --> pdb=" O GLU J 938 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N LEU J 944 " --> pdb=" O LEU J 940 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N ALA J 945 " --> pdb=" O LYS J 941 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N LEU J 946 " --> pdb=" O THR J 942 " (cutoff:3.500A) Processing helix chain 'J' and resid 989 through 1012 removed outlier: 3.999A pdb=" N GLU J 993 " --> pdb=" O THR J 989 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N LEU J 999 " --> pdb=" O MET J 995 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N ALA J1000 " --> pdb=" O VAL J 996 " (cutoff:3.500A) Processing helix chain 'J' and resid 1039 through 1061 removed outlier: 4.750A pdb=" N LYS J1043 " --> pdb=" O ASP J1039 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N LYS J1044 " --> pdb=" O ASP J1040 " (cutoff:3.500A) removed outlier: 4.997A pdb=" N SER J1045 " --> pdb=" O ARG J1041 " (cutoff:3.500A) removed outlier: 5.436A pdb=" N ASN J1046 " --> pdb=" O THR J1042 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER J1049 " --> pdb=" O SER J1045 " (cutoff:3.500A) Processing helix chain 'J' and resid 1220 through 1225 removed outlier: 5.648A pdb=" N LYS J1225 " --> pdb=" O VAL J1221 " (cutoff:3.500A) Processing helix chain 'J' and resid 1230 through 1235 removed outlier: 6.809A pdb=" N GLU J1234 " --> pdb=" O CYS J1230 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N GLY J1235 " --> pdb=" O GLY J1231 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1230 through 1235' Processing helix chain 'J' and resid 1570 through 1576 removed outlier: 4.320A pdb=" N GLU J1574 " --> pdb=" O LEU J1570 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N HIS J1575 " --> pdb=" O PHE J1571 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N LYS J1576 " --> pdb=" O LYS J1572 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1570 through 1576' Processing helix chain 'J' and resid 1640 through 1648 removed outlier: 3.694A pdb=" N LEU J1644 " --> pdb=" O ASP J1640 " (cutoff:3.500A) removed outlier: 4.555A pdb=" N THR J1645 " --> pdb=" O ILE J1641 " (cutoff:3.500A) removed outlier: 5.848A pdb=" N GLU J1646 " --> pdb=" O LEU J1642 " (cutoff:3.500A) removed outlier: 4.119A pdb=" N GLN J1647 " --> pdb=" O GLU J1643 " (cutoff:3.500A) removed outlier: 4.393A pdb=" N GLU J1648 " --> pdb=" O LEU J1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1640 through 1648' Processing helix chain 'J' and resid 1649 through 1666 removed outlier: 3.737A pdb=" N CYS J1665 " --> pdb=" O TYR J1661 " (cutoff:3.500A) removed outlier: 4.578A pdb=" N ALA J1666 " --> pdb=" O SER J1662 " (cutoff:3.500A) Processing helix chain 'J' and resid 1669 through 1681 removed outlier: 3.581A pdb=" N CYS J1677 " --> pdb=" O ALA J1673 " (cutoff:3.500A) removed outlier: 4.437A pdb=" N SER J1678 " --> pdb=" O HIS J1674 " (cutoff:3.500A) removed outlier: 4.450A pdb=" N HIS J1679 " --> pdb=" O ALA J1675 " (cutoff:3.500A) Processing helix chain 'J' and resid 1682 through 1691 removed outlier: 3.610A pdb=" N ASN J1691 " --> pdb=" O TYR J1687 " (cutoff:3.500A) Processing helix chain 'J' and resid 1695 through 1710 Processing helix chain 'J' and resid 1711 through 1723 removed outlier: 3.549A pdb=" N ALA J1717 " --> pdb=" O SER J1713 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N MET J1721 " --> pdb=" O ALA J1717 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N ASN J1722 " --> pdb=" O ARG J1718 " (cutoff:3.500A) removed outlier: 5.342A pdb=" N ASN J1723 " --> pdb=" O LEU J1719 " (cutoff:3.500A) Processing helix chain 'J' and resid 1730 through 1736 removed outlier: 3.501A pdb=" N ILE J1736 " --> pdb=" O GLU J1732 " (cutoff:3.500A) Processing helix chain 'J' and resid 1771 through 1776 removed outlier: 4.275A pdb=" N TYR J1776 " --> pdb=" O ASN J1772 " (cutoff:3.500A) Processing helix chain 'J' and resid 1783 through 1802 removed outlier: 3.550A pdb=" N ALA J1789 " --> pdb=" O ASP J1785 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLU J1797 " --> pdb=" O GLN J1793 " (cutoff:3.500A) Processing helix chain 'J' and resid 1813 through 1832 removed outlier: 3.704A pdb=" N LEU J1817 " --> pdb=" O THR J1813 " (cutoff:3.500A) Proline residue: J1820 - end of helix removed outlier: 4.384A pdb=" N GLY J1832 " --> pdb=" O LEU J1828 " (cutoff:3.500A) Processing helix chain 'J' and resid 1835 through 1847 Processing helix chain 'J' and resid 1893 through 1898 removed outlier: 3.664A pdb=" N MET J1897 " --> pdb=" O GLY J1893 " (cutoff:3.500A) removed outlier: 5.588A pdb=" N LYS J1898 " --> pdb=" O LEU J1894 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1893 through 1898' Processing helix chain 'J' and resid 1900 through 1938 removed outlier: 4.179A pdb=" N LYS J1904 " --> pdb=" O PRO J1900 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N LEU J1905 " --> pdb=" O GLU J1901 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N TYR J1913 " --> pdb=" O LEU J1909 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N LEU J1914 " --> pdb=" O LEU J1910 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N ALA J1928 " --> pdb=" O GLU J1924 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N PHE J1929 " --> pdb=" O ALA J1925 " (cutoff:3.500A) removed outlier: 3.882A pdb=" N ASP J1932 " --> pdb=" O ALA J1928 " (cutoff:3.500A) Processing helix chain 'J' and resid 1940 through 1953 removed outlier: 3.529A pdb=" N ARG J1944 " --> pdb=" O ASN J1940 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N VAL J1948 " --> pdb=" O ARG J1944 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N MET J1949 " --> pdb=" O TYR J1945 " (cutoff:3.500A) removed outlier: 4.186A pdb=" N ASN J1953 " --> pdb=" O MET J1949 " (cutoff:3.500A) Processing helix chain 'J' and resid 1990 through 1997 removed outlier: 6.024A pdb=" N ARG J1994 " --> pdb=" O PRO J1990 " (cutoff:3.500A) removed outlier: 4.512A pdb=" N GLN J1996 " --> pdb=" O GLU J1992 " (cutoff:3.500A) Processing helix chain 'J' and resid 1999 through 2012 removed outlier: 4.130A pdb=" N ILE J2010 " --> pdb=" O THR J2006 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N GLU J2011 " --> pdb=" O HIS J2007 " (cutoff:3.500A) removed outlier: 4.843A pdb=" N LEU J2012 " --> pdb=" O CYS J2008 " (cutoff:3.500A) Processing helix chain 'J' and resid 2026 through 2038 removed outlier: 3.859A pdb=" N LEU J2030 " --> pdb=" O ILE J2026 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N GLU J2035 " --> pdb=" O LEU J2031 " (cutoff:3.500A) Processing helix chain 'J' and resid 2058 through 2074 removed outlier: 4.174A pdb=" N LEU J2062 " --> pdb=" O THR J2058 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N SER J2064 " --> pdb=" O GLN J2060 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N MET J2067 " --> pdb=" O ILE J2063 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N VAL J2068 " --> pdb=" O SER J2064 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N SER J2074 " --> pdb=" O TRP J2070 " (cutoff:3.500A) Processing helix chain 'J' and resid 2078 through 2095 removed outlier: 3.523A pdb=" N VAL J2082 " --> pdb=" O ASP J2078 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N VAL J2087 " --> pdb=" O ARG J2083 " (cutoff:3.500A) removed outlier: 3.999A pdb=" N LEU J2088 " --> pdb=" O ALA J2084 " (cutoff:3.500A) Processing helix chain 'J' and resid 2096 through 2106 removed outlier: 3.502A pdb=" N ARG J2101 " --> pdb=" O GLY J2097 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N ALA J2102 " --> pdb=" O GLY J2098 " (cutoff:3.500A) removed outlier: 3.739A pdb=" N LEU J2103 " --> pdb=" O LEU J2099 " (cutoff:3.500A) Proline residue: J2104 - end of helix Processing helix chain 'J' and resid 2110 through 2132 removed outlier: 3.541A pdb=" N VAL J2114 " --> pdb=" O ASN J2110 " (cutoff:3.500A) removed outlier: 4.865A pdb=" N GLU J2115 " --> pdb=" O GLY J2111 " (cutoff:3.500A) removed outlier: 4.975A pdb=" N ASP J2116 " --> pdb=" O VAL J2112 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N ILE J2118 " --> pdb=" O VAL J2114 " (cutoff:3.500A) removed outlier: 4.103A pdb=" N ASN J2119 " --> pdb=" O GLU J2115 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N LEU J2120 " --> pdb=" O ASP J2116 " (cutoff:3.500A) removed outlier: 4.719A pdb=" N SER J2132 " --> pdb=" O ARG J2128 " (cutoff:3.500A) Processing helix chain 'J' and resid 2140 through 2153 removed outlier: 3.662A pdb=" N ARG J2145 " --> pdb=" O LYS J2141 " (cutoff:3.500A) Processing helix chain 'J' and resid 2154 through 2160 removed outlier: 4.549A pdb=" N GLN J2158 " --> pdb=" O LYS J2154 " (cutoff:3.500A) removed outlier: 5.872A pdb=" N HIS J2159 " --> pdb=" O VAL J2155 " (cutoff:3.500A) Proline residue: J2160 - end of helix No H-bonds generated for 'chain 'J' and resid 2154 through 2160' Processing helix chain 'J' and resid 2161 through 2167 Processing helix chain 'J' and resid 2168 through 2181 removed outlier: 4.619A pdb=" N GLY J2181 " --> pdb=" O VAL J2177 " (cutoff:3.500A) Processing helix chain 'J' and resid 2191 through 2209 removed outlier: 4.615A pdb=" N ALA J2195 " --> pdb=" O PRO J2191 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N ASN J2196 " --> pdb=" O LYS J2192 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N PHE J2200 " --> pdb=" O ASN J2196 " (cutoff:3.500A) removed outlier: 3.803A pdb=" N ARG J2206 " --> pdb=" O CYS J2202 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N ILE J2207 " --> pdb=" O TYR J2203 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N SER J2208 " --> pdb=" O PHE J2204 " (cutoff:3.500A) removed outlier: 5.397A pdb=" N ARG J2209 " --> pdb=" O CYS J2205 " (cutoff:3.500A) Processing helix chain 'J' and resid 2210 through 2217 removed outlier: 4.220A pdb=" N ASP J2217 " --> pdb=" O LYS J2213 " (cutoff:3.500A) Processing helix chain 'J' and resid 2218 through 2225 removed outlier: 4.769A pdb=" N GLU J2224 " --> pdb=" O SER J2220 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N ASN J2225 " --> pdb=" O TYR J2221 " (cutoff:3.500A) Processing helix chain 'J' and resid 2239 through 2249 removed outlier: 3.955A pdb=" N VAL J2243 " --> pdb=" O THR J2239 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N ALA J2244 " --> pdb=" O PRO J2240 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N ALA J2245 " --> pdb=" O LEU J2241 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N VAL J2248 " --> pdb=" O ALA J2244 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N MET J2249 " --> pdb=" O ALA J2245 " (cutoff:3.500A) Processing helix chain 'J' and resid 2251 through 2259 removed outlier: 5.639A pdb=" N ARG J2259 " --> pdb=" O ALA J2255 " (cutoff:3.500A) Processing helix chain 'J' and resid 2260 through 2274 removed outlier: 3.581A pdb=" N GLU J2264 " --> pdb=" O GLU J2260 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N LYS J2265 " --> pdb=" O PRO J2261 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N CYS J2273 " --> pdb=" O TYR J2269 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N GLY J2274 " --> pdb=" O LEU J2270 " (cutoff:3.500A) Processing helix chain 'J' and resid 2295 through 2308 removed outlier: 4.730A pdb=" N TYR J2299 " --> pdb=" O GLU J2295 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N LEU J2300 " --> pdb=" O GLY J2296 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N ASP J2301 " --> pdb=" O GLU J2297 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N PHE J2308 " --> pdb=" O ARG J2304 " (cutoff:3.500A) Processing helix chain 'J' and resid 2314 through 2329 removed outlier: 4.302A pdb=" N ALA J2318 " --> pdb=" O VAL J2314 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N VAL J2320 " --> pdb=" O GLU J2316 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N VAL J2321 " --> pdb=" O ASN J2317 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N VAL J2322 " --> pdb=" O ALA J2318 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N ARG J2327 " --> pdb=" O ARG J2323 " (cutoff:3.500A) Proline residue: J2329 - end of helix Processing helix chain 'J' and resid 2343 through 2354 removed outlier: 4.074A pdb=" N GLU J2349 " --> pdb=" O LEU J2345 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N GLU J2350 " --> pdb=" O ALA J2346 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N ILE J2352 " --> pdb=" O MET J2348 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N LYS J2353 " --> pdb=" O GLU J2349 " (cutoff:3.500A) Processing helix chain 'J' and resid 2387 through 2404 removed outlier: 4.261A pdb=" N THR J2391 " --> pdb=" O ASN J2387 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N ALA J2394 " --> pdb=" O MET J2390 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N LEU J2396 " --> pdb=" O PHE J2392 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ASP J2398 " --> pdb=" O ALA J2394 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ALA J2404 " --> pdb=" O LEU J2400 " (cutoff:3.500A) Processing helix chain 'J' and resid 2408 through 2413 Processing helix chain 'J' and resid 2414 through 2429 removed outlier: 5.902A pdb=" N ILE J2418 " --> pdb=" O LYS J2414 " (cutoff:3.500A) removed outlier: 6.337A pdb=" N ARG J2419 " --> pdb=" O GLY J2415 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N ILE J2420 " --> pdb=" O GLU J2416 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N ARG J2421 " --> pdb=" O ALA J2417 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N LEU J2427 " --> pdb=" O ILE J2423 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ILE J2428 " --> pdb=" O LEU J2424 " (cutoff:3.500A) Proline residue: J2429 - end of helix Processing helix chain 'J' and resid 2432 through 2441 removed outlier: 3.524A pdb=" N SER J2438 " --> pdb=" O VAL J2434 " (cutoff:3.500A) removed outlier: 5.155A pdb=" N ILE J2439 " --> pdb=" O GLY J2435 " (cutoff:3.500A) removed outlier: 4.391A pdb=" N ALA J2440 " --> pdb=" O VAL J2436 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N PHE J2441 " --> pdb=" O ILE J2437 " (cutoff:3.500A) Processing helix chain 'J' and resid 2461 through 2476 removed outlier: 4.732A pdb=" N HIS J2465 " --> pdb=" O PHE J2461 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N LYS J2466 " --> pdb=" O CYS J2462 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N ALA J2467 " --> pdb=" O PRO J2463 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N LEU J2471 " --> pdb=" O ALA J2467 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N PHE J2472 " --> pdb=" O ALA J2468 " (cutoff:3.500A) Processing helix chain 'J' and resid 2481 through 2489 removed outlier: 3.707A pdb=" N LEU J2485 " --> pdb=" O VAL J2481 " (cutoff:3.500A) removed outlier: 4.220A pdb=" N LEU J2488 " --> pdb=" O PHE J2484 " (cutoff:3.500A) removed outlier: 5.475A pdb=" N LEU J2489 " --> pdb=" O LEU J2485 " (cutoff:3.500A) Processing helix chain 'J' and resid 2491 through 2500 Proline residue: J2495 - end of helix removed outlier: 3.802A pdb=" N ALA J2500 " --> pdb=" O ASP J2496 " (cutoff:3.500A) Processing helix chain 'J' and resid 2511 through 2528 removed outlier: 3.696A pdb=" N ASN J2518 " --> pdb=" O ALA J2514 " (cutoff:3.500A) removed outlier: 4.586A pdb=" N CYS J2522 " --> pdb=" O ASN J2518 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N THR J2523 " --> pdb=" O ARG J2519 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N VAL J2525 " --> pdb=" O LEU J2521 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N LEU J2526 " --> pdb=" O CYS J2522 " (cutoff:3.500A) Proline residue: J2527 - end of helix Processing helix chain 'J' and resid 2537 through 2553 Processing helix chain 'J' and resid 2558 through 2576 removed outlier: 4.052A pdb=" N ILE J2570 " --> pdb=" O GLN J2566 " (cutoff:3.500A) removed outlier: 4.343A pdb=" N GLU J2571 " --> pdb=" O ARG J2567 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N VAL J2572 " --> pdb=" O ASP J2568 " (cutoff:3.500A) removed outlier: 3.864A pdb=" N CYS J2573 " --> pdb=" O SER J2569 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N LEU J2574 " --> pdb=" O ILE J2570 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N LEU J2575 " --> pdb=" O GLU J2571 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N SER J2576 " --> pdb=" O VAL J2572 " (cutoff:3.500A) Processing helix chain 'J' and resid 2583 through 2601 removed outlier: 3.823A pdb=" N GLN J2587 " --> pdb=" O PRO J2583 " (cutoff:3.500A) removed outlier: 4.299A pdb=" N HIS J2588 " --> pdb=" O SER J2584 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N VAL J2594 " --> pdb=" O LEU J2590 " (cutoff:3.500A) Proline residue: J2598 - end of helix removed outlier: 5.155A pdb=" N ASN J2601 " --> pdb=" O VAL J2597 " (cutoff:3.500A) Processing helix chain 'J' and resid 2605 through 2624 removed outlier: 3.810A pdb=" N LEU J2624 " --> pdb=" O LYS J2620 " (cutoff:3.500A) Processing helix chain 'J' and resid 2634 through 2653 removed outlier: 4.745A pdb=" N GLU J2638 " --> pdb=" O ALA J2634 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N LEU J2641 " --> pdb=" O GLU J2637 " (cutoff:3.500A) Processing helix chain 'J' and resid 2658 through 2678 removed outlier: 4.131A pdb=" N LEU J2662 " --> pdb=" O TYR J2658 " (cutoff:3.500A) removed outlier: 3.631A pdb=" N PHE J2663 " --> pdb=" O GLU J2659 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N LEU J2665 " --> pdb=" O GLU J2661 " (cutoff:3.500A) Proline residue: J2668 - end of helix removed outlier: 3.606A pdb=" N SER J2671 " --> pdb=" O LEU J2667 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N ALA J2674 " --> pdb=" O LEU J2670 " (cutoff:3.500A) Proline residue: J2678 - end of helix Processing helix chain 'J' and resid 2715 through 2741 removed outlier: 3.893A pdb=" N TYR J2720 " --> pdb=" O GLU J2716 " (cutoff:3.500A) removed outlier: 4.296A pdb=" N PHE J2721 " --> pdb=" O LYS J2717 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N ASN J2723 " --> pdb=" O GLU J2719 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N LYS J2724 " --> pdb=" O TYR J2720 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N HIS J2730 " --> pdb=" O ALA J2726 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N LYS J2737 " --> pdb=" O TRP J2733 " (cutoff:3.500A) removed outlier: 3.535A pdb=" N LEU J2738 " --> pdb=" O SER J2734 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N ALA J2739 " --> pdb=" O MET J2735 " (cutoff:3.500A) removed outlier: 4.294A pdb=" N ASN J2740 " --> pdb=" O ASP J2736 " (cutoff:3.500A) Processing helix chain 'J' and resid 2765 through 2774 removed outlier: 3.959A pdb=" N GLU J2770 " --> pdb=" O GLU J2766 " (cutoff:3.500A) removed outlier: 5.600A pdb=" N ILE J2771 " --> pdb=" O LYS J2767 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N TYR J2772 " --> pdb=" O GLU J2768 " (cutoff:3.500A) Processing helix chain 'J' and resid 2775 through 2787 removed outlier: 4.245A pdb=" N SER J2779 " --> pdb=" O PRO J2775 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N LEU J2780 " --> pdb=" O ILE J2776 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N LYS J2781 " --> pdb=" O LYS J2777 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N THR J2782 " --> pdb=" O GLU J2778 " (cutoff:3.500A) removed outlier: 4.181A pdb=" N TRP J2786 " --> pdb=" O THR J2782 " (cutoff:3.500A) removed outlier: 5.027A pdb=" N GLY J2787 " --> pdb=" O MET J2783 " (cutoff:3.500A) Processing helix chain 'J' and resid 2835 through 2861 removed outlier: 3.659A pdb=" N MET J2844 " --> pdb=" O ALA J2840 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N GLU J2860 " --> pdb=" O LYS J2856 " (cutoff:3.500A) Processing helix chain 'J' and resid 2881 through 2901 removed outlier: 4.934A pdb=" N ASP J2886 " --> pdb=" O GLU J2882 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N LYS J2889 " --> pdb=" O LYS J2885 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N ILE J2893 " --> pdb=" O LYS J2889 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N LEU J2894 " --> pdb=" O ALA J2890 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N PHE J2896 " --> pdb=" O ASP J2892 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N LEU J2897 " --> pdb=" O ILE J2893 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N ILE J2899 " --> pdb=" O LYS J2895 " (cutoff:3.500A) Processing helix chain 'J' and resid 2986 through 3004 Proline residue: J2990 - end of helix removed outlier: 4.126A pdb=" N ALA J2997 " --> pdb=" O SER J2993 " (cutoff:3.500A) removed outlier: 4.234A pdb=" N SER J2998 " --> pdb=" O GLY J2994 " (cutoff:3.500A) removed outlier: 4.518A pdb=" N LYS J3002 " --> pdb=" O SER J2998 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N GLU J3003 " --> pdb=" O ASN J2999 " (cutoff:3.500A) removed outlier: 4.443A pdb=" N MET J3004 " --> pdb=" O LYS J3000 " (cutoff:3.500A) Processing helix chain 'J' and resid 3010 through 3028 removed outlier: 3.509A pdb=" N LEU J3015 " --> pdb=" O LYS J3011 " (cutoff:3.500A) removed outlier: 3.643A pdb=" N ASP J3026 " --> pdb=" O LEU J3022 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N ALA J3027 " --> pdb=" O PHE J3023 " (cutoff:3.500A) Processing helix chain 'J' and resid 3035 through 3052 removed outlier: 3.511A pdb=" N THR J3040 " --> pdb=" O ILE J3036 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N LEU J3051 " --> pdb=" O MET J3047 " (cutoff:3.500A) Processing helix chain 'J' and resid 3061 through 3068 removed outlier: 3.922A pdb=" N ALA J3065 " --> pdb=" O PHE J3061 " (cutoff:3.500A) removed outlier: 4.366A pdb=" N GLU J3067 " --> pdb=" O ASP J3063 " (cutoff:3.500A) removed outlier: 5.220A pdb=" N ASP J3068 " --> pdb=" O ASN J3064 " (cutoff:3.500A) Processing helix chain 'J' and resid 3069 through 3082 Processing helix chain 'J' and resid 3099 through 3115 removed outlier: 3.747A pdb=" N LEU J3103 " --> pdb=" O THR J3099 " (cutoff:3.500A) Proline residue: J3104 - end of helix removed outlier: 3.631A pdb=" N GLU J3111 " --> pdb=" O SER J3107 " (cutoff:3.500A) removed outlier: 3.930A pdb=" N GLY J3114 " --> pdb=" O PHE J3110 " (cutoff:3.500A) removed outlier: 5.023A pdb=" N GLN J3115 " --> pdb=" O GLU J3111 " (cutoff:3.500A) Processing helix chain 'J' and resid 3124 through 3144 removed outlier: 3.588A pdb=" N TYR J3139 " --> pdb=" O LEU J3135 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N GLY J3142 " --> pdb=" O LEU J3138 " (cutoff:3.500A) Processing helix chain 'J' and resid 3149 through 3166 removed outlier: 3.932A pdb=" N ARG J3153 " --> pdb=" O VAL J3149 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N SER J3154 " --> pdb=" O GLU J3150 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N ALA J3161 " --> pdb=" O GLY J3157 " (cutoff:3.500A) removed outlier: 5.028A pdb=" N GLY J3165 " --> pdb=" O ALA J3161 " (cutoff:3.500A) removed outlier: 4.404A pdb=" N ALA J3166 " --> pdb=" O ALA J3162 " (cutoff:3.500A) Processing helix chain 'J' and resid 3171 through 3182 removed outlier: 3.883A pdb=" N ILE J3181 " --> pdb=" O ASP J3177 " (cutoff:3.500A) removed outlier: 4.253A pdb=" N TYR J3182 " --> pdb=" O LYS J3178 " (cutoff:3.500A) Processing helix chain 'J' and resid 3591 through 3609 removed outlier: 3.614A pdb=" N LYS J3597 " --> pdb=" O SER J3593 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N ALA J3599 " --> pdb=" O GLN J3595 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N ALA J3602 " --> pdb=" O ARG J3598 " (cutoff:3.500A) removed outlier: 4.571A pdb=" N PHE J3604 " --> pdb=" O VAL J3600 " (cutoff:3.500A) removed outlier: 5.092A pdb=" N ARG J3605 " --> pdb=" O VAL J3601 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N ALA J3607 " --> pdb=" O CYS J3603 " (cutoff:3.500A) Proline residue: J3608 - end of helix Processing helix chain 'J' and resid 3613 through 3629 removed outlier: 4.077A pdb=" N LYS J3627 " --> pdb=" O GLN J3623 " (cutoff:3.500A) Processing helix chain 'J' and resid 3636 through 3647 removed outlier: 4.541A pdb=" N LYS J3640 " --> pdb=" O TYR J3636 " (cutoff:3.500A) removed outlier: 5.214A pdb=" N LYS J3647 " --> pdb=" O GLU J3643 " (cutoff:3.500A) Processing helix chain 'J' and resid 3663 through 3679 removed outlier: 3.669A pdb=" N PHE J3672 " --> pdb=" O LEU J3668 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N ARG J3674 " --> pdb=" O LEU J3670 " (cutoff:3.500A) removed outlier: 5.337A pdb=" N GLU J3679 " --> pdb=" O THR J3675 " (cutoff:3.500A) Processing helix chain 'J' and resid 3686 through 3700 removed outlier: 3.932A pdb=" N ASP J3694 " --> pdb=" O MET J3690 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N SER J3699 " --> pdb=" O ILE J3695 " (cutoff:3.500A) removed outlier: 4.528A pdb=" N CYS J3700 " --> pdb=" O MET J3696 " (cutoff:3.500A) Processing helix chain 'J' and resid 3714 through 3734 removed outlier: 3.754A pdb=" N LYS J3718 " --> pdb=" O SER J3714 " (cutoff:3.500A) removed outlier: 4.083A pdb=" N GLU J3721 " --> pdb=" O GLU J3717 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N LEU J3732 " --> pdb=" O GLN J3728 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N ASP J3734 " --> pdb=" O ALA J3730 " (cutoff:3.500A) Processing helix chain 'J' and resid 3736 through 3749 removed outlier: 3.864A pdb=" N MET J3740 " --> pdb=" O GLY J3736 " (cutoff:3.500A) removed outlier: 4.279A pdb=" N VAL J3741 " --> pdb=" O ALA J3737 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N LEU J3742 " --> pdb=" O ALA J3738 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ILE J3745 " --> pdb=" O VAL J3741 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N SER J3746 " --> pdb=" O LEU J3742 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N LYS J3749 " --> pdb=" O ILE J3745 " (cutoff:3.500A) Processing helix chain 'J' and resid 3753 through 3768 removed outlier: 3.579A pdb=" N THR J3759 " --> pdb=" O MET J3755 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ALA J3765 " --> pdb=" O LYS J3761 " (cutoff:3.500A) removed outlier: 3.727A pdb=" N LEU J3767 " --> pdb=" O GLY J3763 " (cutoff:3.500A) Processing helix chain 'J' and resid 3771 through 3786 removed outlier: 4.178A pdb=" N GLN J3775 " --> pdb=" O ASN J3771 " (cutoff:3.500A) removed outlier: 3.792A pdb=" N LEU J3779 " --> pdb=" O GLN J3775 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N LYS J3786 " --> pdb=" O LEU J3782 " (cutoff:3.500A) Processing helix chain 'J' and resid 3787 through 3801 removed outlier: 4.328A pdb=" N PHE J3791 " --> pdb=" O ASP J3787 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N SER J3800 " --> pdb=" O GLY J3796 " (cutoff:3.500A) removed outlier: 4.214A pdb=" N CYS J3801 " --> pdb=" O LEU J3797 " (cutoff:3.500A) Processing helix chain 'J' and resid 3805 through 3819 removed outlier: 3.676A pdb=" N PHE J3809 " --> pdb=" O ASP J3805 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ARG J3811 " --> pdb=" O ASN J3807 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N GLN J3812 " --> pdb=" O ALA J3808 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ASN J3813 " --> pdb=" O PHE J3809 " (cutoff:3.500A) Processing helix chain 'J' and resid 3829 through 3849 removed outlier: 5.256A pdb=" N ASP J3833 " --> pdb=" O LYS J3829 " (cutoff:3.500A) removed outlier: 6.708A pdb=" N GLU J3835 " --> pdb=" O LEU J3831 " (cutoff:3.500A) removed outlier: 6.615A pdb=" N PHE J3836 " --> pdb=" O GLN J3832 " (cutoff:3.500A) removed outlier: 4.576A pdb=" N THR J3837 " --> pdb=" O ASP J3833 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N CYS J3848 " --> pdb=" O LEU J3844 " (cutoff:3.500A) Processing helix chain 'J' and resid 3852 through 3861 removed outlier: 3.794A pdb=" N ARG J3860 " --> pdb=" O GLN J3856 " (cutoff:3.500A) Processing helix chain 'J' and resid 3870 through 3894 removed outlier: 3.689A pdb=" N VAL J3876 " --> pdb=" O ILE J3872 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N LEU J3879 " --> pdb=" O THR J3875 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N ARG J3881 " --> pdb=" O ASP J3877 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N ASP J3888 " --> pdb=" O GLU J3884 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N PHE J3889 " --> pdb=" O SER J3885 " (cutoff:3.500A) Processing helix chain 'J' and resid 3900 through 3926 removed outlier: 3.549A pdb=" N ASN J3906 " --> pdb=" O GLN J3902 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ALA J3914 " --> pdb=" O ALA J3910 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N GLU J3923 " --> pdb=" O ASN J3919 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N TYR J3924 " --> pdb=" O THR J3920 " (cutoff:3.500A) removed outlier: 3.912A pdb=" N ILE J3925 " --> pdb=" O LEU J3921 " (cutoff:3.500A) Processing helix chain 'J' and resid 3929 through 3940 removed outlier: 3.750A pdb=" N GLN J3933 " --> pdb=" O CYS J3929 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N HIS J3938 " --> pdb=" O GLN J3934 " (cutoff:3.500A) removed outlier: 5.234A pdb=" N ARG J3940 " --> pdb=" O LEU J3936 " (cutoff:3.500A) Processing helix chain 'J' and resid 3941 through 3962 removed outlier: 3.747A pdb=" N HIS J3954 " --> pdb=" O HIS J3950 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N GLN J3956 " --> pdb=" O PHE J3952 " (cutoff:3.500A) removed outlier: 4.799A pdb=" N MET J3957 " --> pdb=" O ALA J3953 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N GLN J3961 " --> pdb=" O MET J3957 " (cutoff:3.500A) removed outlier: 5.192A pdb=" N ASP J3962 " --> pdb=" O LYS J3958 " (cutoff:3.500A) Processing helix chain 'J' and resid 3963 through 3988 removed outlier: 5.084A pdb=" N GLU J3967 " --> pdb=" O SER J3963 " (cutoff:3.500A) removed outlier: 5.796A pdb=" N LEU J3968 " --> pdb=" O SER J3964 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N GLU J3971 " --> pdb=" O GLU J3967 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N LEU J3983 " --> pdb=" O MET J3979 " (cutoff:3.500A) removed outlier: 3.536A pdb=" N LEU J3987 " --> pdb=" O LEU J3983 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N GLU J3988 " --> pdb=" O LEU J3984 " (cutoff:3.500A) Processing helix chain 'J' and resid 3994 through 4008 removed outlier: 3.649A pdb=" N ASP J4002 " --> pdb=" O LYS J3998 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N LEU J4004 " --> pdb=" O MET J4000 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N SER J4008 " --> pdb=" O LEU J4004 " (cutoff:3.500A) Processing helix chain 'J' and resid 4009 through 4030 removed outlier: 3.593A pdb=" N MET J4013 " --> pdb=" O ASN J4009 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N PHE J4021 " --> pdb=" O PHE J4017 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N SER J4030 " --> pdb=" O ASP J4026 " (cutoff:3.500A) Processing helix chain 'J' and resid 4031 through 4036 Processing helix chain 'J' and resid 4045 through 4057 removed outlier: 3.554A pdb=" N PHE J4049 " --> pdb=" O SER J4045 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N GLU J4054 " --> pdb=" O HIS J4050 " (cutoff:3.500A) removed outlier: 3.768A pdb=" N LYS J4057 " --> pdb=" O MET J4053 " (cutoff:3.500A) Processing helix chain 'J' and resid 4060 through 4071 removed outlier: 5.723A pdb=" N CYS J4070 " --> pdb=" O PHE J4066 " (cutoff:3.500A) removed outlier: 4.760A pdb=" N ALA J4071 " --> pdb=" O LEU J4067 " (cutoff:3.500A) Processing helix chain 'J' and resid 4081 through 4090 removed outlier: 4.562A pdb=" N VAL J4085 " --> pdb=" O TYR J4081 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N LYS J4086 " --> pdb=" O GLU J4082 " (cutoff:3.500A) Processing helix chain 'J' and resid 4092 through 4110 removed outlier: 5.623A pdb=" N GLY J4096 " --> pdb=" O ALA J4092 " (cutoff:3.500A) Processing helix chain 'J' and resid 4113 through 4124 removed outlier: 3.612A pdb=" N GLU J4121 " --> pdb=" O GLN J4117 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ALA J4123 " --> pdb=" O PHE J4119 " (cutoff:3.500A) Processing helix chain 'J' and resid 4125 through 4133 Proline residue: J4132 - end of helix Processing helix chain 'J' and resid 4154 through 4164 removed outlier: 3.982A pdb=" N GLU J4162 " --> pdb=" O ARG J4158 " (cutoff:3.500A) removed outlier: 4.349A pdb=" N LYS J4163 " --> pdb=" O THR J4159 " (cutoff:3.500A) Proline residue: J4164 - end of helix Processing helix chain 'J' and resid 4165 through 4180 removed outlier: 3.511A pdb=" N PHE J4173 " --> pdb=" O SER J4169 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N VAL J4178 " --> pdb=" O ILE J4174 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N ASN J4179 " --> pdb=" O PHE J4175 " (cutoff:3.500A) Processing helix chain 'J' and resid 4183 through 4207 removed outlier: 3.966A pdb=" N MET J4187 " --> pdb=" O GLU J4183 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N GLU J4188 " --> pdb=" O LYS J4184 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ASP J4196 " --> pdb=" O ASN J4192 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ILE J4198 " --> pdb=" O CYS J4194 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLN J4206 " --> pdb=" O GLN J4202 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N ILE J4207 " --> pdb=" O LEU J4203 " (cutoff:3.500A) Processing helix chain 'J' and resid 4487 through 4500 removed outlier: 3.963A pdb=" N LYS J4491 " --> pdb=" O ALA J4487 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LEU J4492 " --> pdb=" O TYR J4488 " (cutoff:3.500A) removed outlier: 4.498A pdb=" N PHE J4500 " --> pdb=" O PHE J4496 " (cutoff:3.500A) Processing helix chain 'J' and resid 4501 through 4521 removed outlier: 3.778A pdb=" N MET J4505 " --> pdb=" O TYR J4501 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N ALA J4511 " --> pdb=" O ALA J4507 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N ASN J4515 " --> pdb=" O ALA J4511 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU J4519 " --> pdb=" O ASN J4515 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N PHE J4520 " --> pdb=" O PHE J4516 " (cutoff:3.500A) removed outlier: 4.695A pdb=" N TYR J4521 " --> pdb=" O ILE J4517 " (cutoff:3.500A) Processing helix chain 'J' and resid 4569 through 4614 removed outlier: 3.955A pdb=" N ILE J4578 " --> pdb=" O ARG J4574 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N ILE J4583 " --> pdb=" O LEU J4579 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N ILE J4588 " --> pdb=" O SER J4584 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLY J4590 " --> pdb=" O PHE J4586 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N CYS J4593 " --> pdb=" O ILE J4589 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N LYS J4595 " --> pdb=" O TYR J4591 " (cutoff:3.500A) removed outlier: 4.619A pdb=" N VAL J4596 " --> pdb=" O TYR J4592 " (cutoff:3.500A) Proline residue: J4597 - end of helix removed outlier: 3.706A pdb=" N LYS J4610 " --> pdb=" O GLU J4606 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N LEU J4611 " --> pdb=" O VAL J4607 " (cutoff:3.500A) Processing helix chain 'J' and resid 4626 through 4639 removed outlier: 4.777A pdb=" N LEU J4634 " --> pdb=" O GLN J4630 " (cutoff:3.500A) removed outlier: 4.905A pdb=" N VAL J4635 " --> pdb=" O TRP J4631 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ILE J4636 " --> pdb=" O ASP J4632 " (cutoff:3.500A) removed outlier: 5.070A pdb=" N ASN J4637 " --> pdb=" O ARG J4633 " (cutoff:3.500A) removed outlier: 5.926A pdb=" N THR J4638 " --> pdb=" O LEU J4634 " (cutoff:3.500A) removed outlier: 5.664A pdb=" N GLN J4639 " --> pdb=" O VAL J4635 " (cutoff:3.500A) Processing helix chain 'J' and resid 4649 through 4658 removed outlier: 3.578A pdb=" N MET J4655 " --> pdb=" O LYS J4651 " (cutoff:3.500A) Processing helix chain 'J' and resid 4663 through 4672 removed outlier: 3.836A pdb=" N SER J4668 " --> pdb=" O ARG J4664 " (cutoff:3.500A) Processing helix chain 'J' and resid 4703 through 4718 removed outlier: 3.525A pdb=" N LEU J4711 " --> pdb=" O GLN J4707 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N GLY J4712 " --> pdb=" O MET J4708 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N VAL J4713 " --> pdb=" O TRP J4709 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N VAL J4714 " --> pdb=" O LYS J4710 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N THR J4716 " --> pdb=" O GLY J4712 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ASP J4717 " --> pdb=" O VAL J4713 " (cutoff:3.500A) removed outlier: 5.682A pdb=" N ASN J4718 " --> pdb=" O VAL J4714 " (cutoff:3.500A) Processing helix chain 'J' and resid 4719 through 4737 removed outlier: 3.571A pdb=" N SER J4730 " --> pdb=" O TYR J4726 " (cutoff:3.500A) Processing helix chain 'J' and resid 4744 through 4750 removed outlier: 4.618A pdb=" N ALA J4748 " --> pdb=" O LEU J4744 " (cutoff:3.500A) removed outlier: 4.118A pdb=" N MET J4749 " --> pdb=" O LEU J4745 " (cutoff:3.500A) Processing helix chain 'J' and resid 4763 through 4787 removed outlier: 4.875A pdb=" N GLN J4767 " --> pdb=" O HIS J4763 " (cutoff:3.500A) removed outlier: 4.726A pdb=" N LEU J4768 " --> pdb=" O ASN J4764 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N LEU J4770 " --> pdb=" O LYS J4766 " (cutoff:3.500A) removed outlier: 3.783A pdb=" N VAL J4779 " --> pdb=" O LEU J4775 " (cutoff:3.500A) Processing helix chain 'J' and resid 4790 through 4795 removed outlier: 3.933A pdb=" N TYR J4794 " --> pdb=" O PHE J4790 " (cutoff:3.500A) removed outlier: 5.556A pdb=" N ASN J4795 " --> pdb=" O ARG J4791 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 4790 through 4795' Processing helix chain 'J' and resid 4809 through 4825 removed outlier: 4.076A pdb=" N TYR J4814 " --> pdb=" O MET J4810 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N TYR J4819 " --> pdb=" O MET J4815 " (cutoff:3.500A) removed outlier: 5.843A pdb=" N ALA J4824 " --> pdb=" O VAL J4820 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N GLY J4825 " --> pdb=" O GLY J4821 " (cutoff:3.500A) Processing helix chain 'J' and resid 4827 through 4832 removed outlier: 6.033A pdb=" N GLU J4831 " --> pdb=" O GLY J4827 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N ILE J4832 " --> pdb=" O ILE J4828 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 4827 through 4832' Processing helix chain 'J' and resid 4840 through 4854 removed outlier: 3.630A pdb=" N PHE J4847 " --> pdb=" O TYR J4843 " (cutoff:3.500A) Processing helix chain 'J' and resid 4858 through 4889 removed outlier: 3.765A pdb=" N ILE J4867 " --> pdb=" O ILE J4863 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N ASP J4869 " --> pdb=" O GLY J4865 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N ARG J4875 " --> pdb=" O PHE J4871 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N GLN J4880 " --> pdb=" O ASP J4876 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N LYS J4882 " --> pdb=" O GLN J4878 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N ASP J4884 " --> pdb=" O GLN J4880 " (cutoff:3.500A) removed outlier: 3.987A pdb=" N LYS J4888 " --> pdb=" O ASP J4884 " (cutoff:3.500A) removed outlier: 5.007A pdb=" N CYS J4889 " --> pdb=" O MET J4885 " (cutoff:3.500A) Processing helix chain 'J' and resid 4895 through 4900 removed outlier: 4.070A pdb=" N PHE J4899 " --> pdb=" O GLY J4895 " (cutoff:3.500A) Processing helix chain 'J' and resid 4904 through 4912 removed outlier: 3.957A pdb=" N THR J4908 " --> pdb=" O HIS J4904 " (cutoff:3.500A) Processing helix chain 'J' and resid 4915 through 4930 removed outlier: 3.699A pdb=" N TYR J4919 " --> pdb=" O ASN J4915 " (cutoff:3.500A) removed outlier: 4.143A pdb=" N LEU J4920 " --> pdb=" O LEU J4916 " (cutoff:3.500A) removed outlier: 5.808A pdb=" N ASP J4930 " --> pdb=" O LEU J4926 " (cutoff:3.500A) Processing helix chain 'J' and resid 4935 through 4948 removed outlier: 3.682A pdb=" N TYR J4940 " --> pdb=" O GLY J4936 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N TRP J4942 " --> pdb=" O GLU J4938 " (cutoff:3.500A) Processing helix chain 'J' and resid 4958 through 4964 removed outlier: 4.806A pdb=" N GLN J4962 " --> pdb=" O CYS J4958 " (cutoff:3.500A) removed outlier: 4.670A pdb=" N TYR J4963 " --> pdb=" O PHE J4959 " (cutoff:3.500A) removed outlier: 5.121A pdb=" N GLU J4964 " --> pdb=" O ARG J4960 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 4958 through 4964' Processing helix chain 'J' and resid 398 through 403 removed outlier: 4.459A pdb=" N ASP J 401 " --> pdb=" O HIS J 398 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N GLY J 402 " --> pdb=" O MET J 399 " (cutoff:3.500A) removed outlier: 5.325A pdb=" N LEU J 403 " --> pdb=" O ASP J 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 398 through 403' Processing helix chain 'J' and resid 4738 through 4743 removed outlier: 5.240A pdb=" N ALA J4741 " --> pdb=" O PHE J4738 " (cutoff:3.500A) removed outlier: 4.423A pdb=" N ALA J4742 " --> pdb=" O PHE J4739 " (cutoff:3.500A) Processing helix chain 'J' and resid 54 through 59 Proline residue: J 59 - end of helix No H-bonds generated for 'chain 'J' and resid 54 through 59' Processing helix chain 'J' and resid 4615 through 4620 removed outlier: 3.568A pdb=" N GLU J4620 " --> pdb=" O GLY J4615 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 4615 through 4620' Processing helix chain 'B' and resid 38 through 43 removed outlier: 3.611A pdb=" N ARG B 42 " --> pdb=" O SER B 38 " (cutoff:3.500A) Processing helix chain 'B' and resid 56 through 67 removed outlier: 3.716A pdb=" N GLN B 65 " --> pdb=" O GLU B 61 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N MET B 66 " --> pdb=" O GLY B 62 " (cutoff:3.500A) removed outlier: 5.459A pdb=" N SER B 67 " --> pdb=" O ALA B 63 " (cutoff:3.500A) Processing helix chain 'B' and resid 77 through 82 removed outlier: 3.870A pdb=" N TYR B 82 " --> pdb=" O PRO B 78 " (cutoff:3.500A) Processing helix chain 'E' and resid 38 through 43 removed outlier: 3.611A pdb=" N ARG E 42 " --> pdb=" O SER E 38 " (cutoff:3.500A) Processing helix chain 'E' and resid 56 through 67 removed outlier: 3.716A pdb=" N GLN E 65 " --> pdb=" O GLU E 61 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N MET E 66 " --> pdb=" O GLY E 62 " (cutoff:3.500A) removed outlier: 5.459A pdb=" N SER E 67 " --> pdb=" O ALA E 63 " (cutoff:3.500A) Processing helix chain 'E' and resid 77 through 82 removed outlier: 3.870A pdb=" N TYR E 82 " --> pdb=" O PRO E 78 " (cutoff:3.500A) Processing helix chain 'H' and resid 38 through 43 removed outlier: 3.611A pdb=" N ARG H 42 " --> pdb=" O SER H 38 " (cutoff:3.500A) Processing helix chain 'H' and resid 56 through 67 removed outlier: 3.716A pdb=" N GLN H 65 " --> pdb=" O GLU H 61 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N MET H 66 " --> pdb=" O GLY H 62 " (cutoff:3.500A) removed outlier: 5.460A pdb=" N SER H 67 " --> pdb=" O ALA H 63 " (cutoff:3.500A) Processing helix chain 'H' and resid 77 through 82 removed outlier: 3.870A pdb=" N TYR H 82 " --> pdb=" O PRO H 78 " (cutoff:3.500A) Processing helix chain 'K' and resid 38 through 43 removed outlier: 3.611A pdb=" N ARG K 42 " --> pdb=" O SER K 38 " (cutoff:3.500A) Processing helix chain 'K' and resid 56 through 67 removed outlier: 3.716A pdb=" N GLN K 65 " --> pdb=" O GLU K 61 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N MET K 66 " --> pdb=" O GLY K 62 " (cutoff:3.500A) removed outlier: 5.459A pdb=" N SER K 67 " --> pdb=" O ALA K 63 " (cutoff:3.500A) Processing helix chain 'K' and resid 77 through 82 removed outlier: 3.871A pdb=" N TYR K 82 " --> pdb=" O PRO K 78 " (cutoff:3.500A) Processing helix chain 'C' and resid 10 through 22 removed outlier: 3.723A pdb=" N LYS C 14 " --> pdb=" O ILE C 10 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N PHE C 20 " --> pdb=" O ALA C 16 " (cutoff:3.500A) removed outlier: 4.935A pdb=" N LYS C 22 " --> pdb=" O SER C 18 " (cutoff:3.500A) Processing helix chain 'C' and resid 29 through 41 removed outlier: 3.660A pdb=" N LEU C 33 " --> pdb=" O THR C 29 " (cutoff:3.500A) Processing helix chain 'C' and resid 45 through 58 removed outlier: 4.468A pdb=" N VAL C 56 " --> pdb=" O MET C 52 " (cutoff:3.500A) removed outlier: 4.612A pdb=" N ASP C 57 " --> pdb=" O ILE C 53 " (cutoff:3.500A) removed outlier: 5.135A pdb=" N ALA C 58 " --> pdb=" O ASN C 54 " (cutoff:3.500A) Processing helix chain 'C' and resid 65 through 77 removed outlier: 3.707A pdb=" N MET C 77 " --> pdb=" O MET C 73 " (cutoff:3.500A) Processing helix chain 'F' and resid 10 through 22 removed outlier: 3.723A pdb=" N LYS F 14 " --> pdb=" O ILE F 10 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N PHE F 20 " --> pdb=" O ALA F 16 " (cutoff:3.500A) removed outlier: 4.935A pdb=" N LYS F 22 " --> pdb=" O SER F 18 " (cutoff:3.500A) Processing helix chain 'F' and resid 29 through 41 removed outlier: 3.660A pdb=" N LEU F 33 " --> pdb=" O THR F 29 " (cutoff:3.500A) Processing helix chain 'F' and resid 45 through 58 removed outlier: 4.469A pdb=" N VAL F 56 " --> pdb=" O MET F 52 " (cutoff:3.500A) removed outlier: 4.612A pdb=" N ASP F 57 " --> pdb=" O ILE F 53 " (cutoff:3.500A) removed outlier: 5.134A pdb=" N ALA F 58 " --> pdb=" O ASN F 54 " (cutoff:3.500A) Processing helix chain 'F' and resid 65 through 77 removed outlier: 3.707A pdb=" N MET F 77 " --> pdb=" O MET F 73 " (cutoff:3.500A) Processing helix chain 'I' and resid 10 through 22 removed outlier: 3.723A pdb=" N LYS I 14 " --> pdb=" O ILE I 10 " (cutoff:3.500A) removed outlier: 3.887A pdb=" N PHE I 20 " --> pdb=" O ALA I 16 " (cutoff:3.500A) removed outlier: 4.935A pdb=" N LYS I 22 " --> pdb=" O SER I 18 " (cutoff:3.500A) Processing helix chain 'I' and resid 29 through 41 removed outlier: 3.660A pdb=" N LEU I 33 " --> pdb=" O THR I 29 " (cutoff:3.500A) Processing helix chain 'I' and resid 45 through 58 removed outlier: 4.468A pdb=" N VAL I 56 " --> pdb=" O MET I 52 " (cutoff:3.500A) removed outlier: 4.613A pdb=" N ASP I 57 " --> pdb=" O ILE I 53 " (cutoff:3.500A) removed outlier: 5.135A pdb=" N ALA I 58 " --> pdb=" O ASN I 54 " (cutoff:3.500A) Processing helix chain 'I' and resid 65 through 77 removed outlier: 3.707A pdb=" N MET I 77 " --> pdb=" O MET I 73 " (cutoff:3.500A) Processing helix chain 'L' and resid 10 through 22 removed outlier: 3.723A pdb=" N LYS L 14 " --> pdb=" O ILE L 10 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N PHE L 20 " --> pdb=" O ALA L 16 " (cutoff:3.500A) removed outlier: 4.935A pdb=" N LYS L 22 " --> pdb=" O SER L 18 " (cutoff:3.500A) Processing helix chain 'L' and resid 29 through 41 removed outlier: 3.660A pdb=" N LEU L 33 " --> pdb=" O THR L 29 " (cutoff:3.500A) Processing helix chain 'L' and resid 45 through 58 removed outlier: 4.468A pdb=" N VAL L 56 " --> pdb=" O MET L 52 " (cutoff:3.500A) removed outlier: 4.612A pdb=" N ASP L 57 " --> pdb=" O ILE L 53 " (cutoff:3.500A) removed outlier: 5.135A pdb=" N ALA L 58 " --> pdb=" O ASN L 54 " (cutoff:3.500A) Processing helix chain 'L' and resid 65 through 77 removed outlier: 3.707A pdb=" N MET L 77 " --> pdb=" O MET L 73 " (cutoff:3.500A) Processing sheet with id= 1, first strand: chain 'A' and resid 47 through 52 removed outlier: 5.875A pdb=" N LYS A 34 " --> pdb=" O THR A 52 " (cutoff:3.500A) removed outlier: 5.631A pdb=" N LEU A 22 " --> pdb=" O LEU A 37 " (cutoff:3.500A) removed outlier: 10.531A pdb=" N ALA A 39 " --> pdb=" O VAL A 20 " (cutoff:3.500A) removed outlier: 13.876A pdb=" N VAL A 20 " --> pdb=" O ALA A 39 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N ALA A 215 " --> pdb=" O VAL A 21 " (cutoff:3.500A) Processing sheet with id= 2, first strand: chain 'A' and resid 67 through 70 removed outlier: 6.472A pdb=" N LEU A 120 " --> pdb=" O GLU A 70 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'A' and resid 161 through 164 Processing sheet with id= 4, first strand: chain 'A' and resid 193 through 196 Processing sheet with id= 5, first strand: chain 'A' and resid 244 through 247 Processing sheet with id= 6, first strand: chain 'A' and resid 295 through 299 removed outlier: 3.582A pdb=" N GLU A 278 " --> pdb=" O ARG A 296 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N ARG A 298 " --> pdb=" O ARG A 276 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N ARG A 276 " --> pdb=" O ARG A 298 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N ASP A 232 " --> pdb=" O LEU A 277 " (cutoff:3.500A) removed outlier: 5.918A pdb=" N VAL A 233 " --> pdb=" O SER A 408 " (cutoff:3.500A) removed outlier: 3.969A pdb=" N SER A 406 " --> pdb=" O ARG A 235 " (cutoff:3.500A) Processing sheet with id= 7, first strand: chain 'A' and resid 305 through 309 Processing sheet with id= 8, first strand: chain 'A' and resid 329 through 333 Processing sheet with id= 9, first strand: chain 'A' and resid 644 through 650 removed outlier: 4.078A pdb=" N GLN A 645 " --> pdb=" O HIS A1631 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N VAL A 649 " --> pdb=" O PHE A1627 " (cutoff:3.500A) Processing sheet with id= 10, first strand: chain 'A' and resid 652 through 656 removed outlier: 5.757A pdb=" N GLY A 696 " --> pdb=" O VAL A 791 " (cutoff:3.500A) Processing sheet with id= 11, first strand: chain 'A' and resid 766 through 769 removed outlier: 5.328A pdb=" N SER A 767 " --> pdb=" O CYS A 758 " (cutoff:3.500A) removed outlier: 5.163A pdb=" N CYS A 758 " --> pdb=" O SER A 767 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N ASP A 753 " --> pdb=" O VAL A 679 " (cutoff:3.500A) removed outlier: 5.254A pdb=" N TYR A 675 " --> pdb=" O CYS A 757 " (cutoff:3.500A) removed outlier: 5.031A pdb=" N GLU A 676 " --> pdb=" O LEU A 803 " (cutoff:3.500A) removed outlier: 6.289A pdb=" N LYS A 799 " --> pdb=" O ASP A 680 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N VAL A1619 " --> pdb=" O VAL A 800 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N PHE A 802 " --> pdb=" O TRP A1617 " (cutoff:3.500A) removed outlier: 4.891A pdb=" N TRP A1617 " --> pdb=" O PHE A 802 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N LEU A1618 " --> pdb=" O GLU A1613 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N GLU A1613 " --> pdb=" O LEU A1618 " (cutoff:3.500A) Processing sheet with id= 12, first strand: chain 'A' and resid 1148 through 1152 removed outlier: 3.705A pdb=" N GLY A1148 " --> pdb=" O HIS A1146 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N HIS A1146 " --> pdb=" O GLY A1148 " (cutoff:3.500A) removed outlier: 5.074A pdb=" N ALA A1142 " --> pdb=" O TYR A1152 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N GLN A1143 " --> pdb=" O ASP A1138 " (cutoff:3.500A) removed outlier: 6.313A pdb=" N MET A1113 " --> pdb=" O GLY A1139 " (cutoff:3.500A) removed outlier: 6.949A pdb=" N ASP A1112 " --> pdb=" O GLY A1208 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N GLY A1208 " --> pdb=" O ASP A1112 " (cutoff:3.500A) removed outlier: 6.103A pdb=" N ILE A1087 " --> pdb=" O SER A1252 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N ARG A1089 " --> pdb=" O TRP A1250 " (cutoff:3.500A) removed outlier: 6.444A pdb=" N MET A1249 " --> pdb=" O PHE A1603 " (cutoff:3.500A) removed outlier: 5.207A pdb=" N MET A1599 " --> pdb=" O LYS A1253 " (cutoff:3.500A) Processing sheet with id= 13, first strand: chain 'A' and resid 1172 through 1177 removed outlier: 3.966A pdb=" N THR A1172 " --> pdb=" O ASP A1167 " (cutoff:3.500A) removed outlier: 4.682A pdb=" N GLY A1163 " --> pdb=" O THR A1176 " (cutoff:3.500A) removed outlier: 6.839A pdb=" N ALA A1158 " --> pdb=" O THR A1109 " (cutoff:3.500A) removed outlier: 7.245A pdb=" N THR A1109 " --> pdb=" O ALA A1158 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N ALA A1107 " --> pdb=" O ASP A1160 " (cutoff:3.500A) removed outlier: 5.944A pdb=" N PHE A1105 " --> pdb=" O VAL A1162 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N PHE A1103 " --> pdb=" O CYS A1164 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N GLU A1104 " --> pdb=" O ASN A1216 " (cutoff:3.500A) removed outlier: 6.437A pdb=" N VAL A1212 " --> pdb=" O VAL A1108 " (cutoff:3.500A) Processing sheet with id= 14, first strand: chain 'A' and resid 1256 through 1260 removed outlier: 6.717A pdb=" N LEU A1591 " --> pdb=" O SER A1305 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N SER A1305 " --> pdb=" O LEU A1591 " (cutoff:3.500A) removed outlier: 5.145A pdb=" N PHE A1301 " --> pdb=" O LEU A1595 " (cutoff:3.500A) removed outlier: 9.007A pdb=" N SER A1597 " --> pdb=" O ILE A1299 " (cutoff:3.500A) removed outlier: 13.096A pdb=" N ILE A1299 " --> pdb=" O SER A1597 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N MET A1300 " --> pdb=" O ALA A1545 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N ALA A1545 " --> pdb=" O MET A1300 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N ALA A1490 " --> pdb=" O VAL A1441 " (cutoff:3.500A) removed outlier: 5.648A pdb=" N VAL A1443 " --> pdb=" O VAL A1488 " (cutoff:3.500A) removed outlier: 5.276A pdb=" N TRP A1445 " --> pdb=" O TYR A1486 " (cutoff:3.500A) Processing sheet with id= 15, first strand: chain 'A' and resid 1268 through 1274 removed outlier: 4.166A pdb=" N GLU A1269 " --> pdb=" O GLY A1291 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N GLY A1291 " --> pdb=" O GLU A1269 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N SER A1289 " --> pdb=" O THR A1271 " (cutoff:3.500A) removed outlier: 5.326A pdb=" N THR A1286 " --> pdb=" O GLU A1556 " (cutoff:3.500A) removed outlier: 5.803A pdb=" N LYS A1288 " --> pdb=" O GLN A1554 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N GLN A1554 " --> pdb=" O LYS A1288 " (cutoff:3.500A) removed outlier: 6.909A pdb=" N PHE A1290 " --> pdb=" O VAL A1552 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N VAL A1552 " --> pdb=" O PHE A1290 " (cutoff:3.500A) Processing sheet with id= 16, first strand: chain 'A' and resid 1465 through 1469 removed outlier: 4.433A pdb=" N VAL A1465 " --> pdb=" O ARG A1482 " (cutoff:3.500A) removed outlier: 6.178A pdb=" N VAL A1467 " --> pdb=" O ILE A1480 " (cutoff:3.500A) removed outlier: 3.680A pdb=" N LEU A1469 " --> pdb=" O GLU A1478 " (cutoff:3.500A) removed outlier: 4.628A pdb=" N GLU A1478 " --> pdb=" O LEU A1469 " (cutoff:3.500A) Processing sheet with id= 17, first strand: chain 'A' and resid 1506 through 1511 No H-bonds generated for sheet with id= 17 Processing sheet with id= 18, first strand: chain 'A' and resid 2788 through 2792 removed outlier: 3.721A pdb=" N ARG A2789 " --> pdb=" O SER A2905 " (cutoff:3.500A) Processing sheet with id= 19, first strand: chain 'A' and resid 4134 through 4138 Processing sheet with id= 20, first strand: chain 'D' and resid 47 through 52 removed outlier: 5.875A pdb=" N LYS D 34 " --> pdb=" O THR D 52 " (cutoff:3.500A) removed outlier: 5.630A pdb=" N LEU D 22 " --> pdb=" O LEU D 37 " (cutoff:3.500A) removed outlier: 10.530A pdb=" N ALA D 39 " --> pdb=" O VAL D 20 " (cutoff:3.500A) removed outlier: 13.876A pdb=" N VAL D 20 " --> pdb=" O ALA D 39 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N ALA D 215 " --> pdb=" O VAL D 21 " (cutoff:3.500A) Processing sheet with id= 21, first strand: chain 'D' and resid 67 through 70 removed outlier: 6.472A pdb=" N LEU D 120 " --> pdb=" O GLU D 70 " (cutoff:3.500A) Processing sheet with id= 22, first strand: chain 'D' and resid 161 through 164 Processing sheet with id= 23, first strand: chain 'D' and resid 193 through 196 Processing sheet with id= 24, first strand: chain 'D' and resid 244 through 247 Processing sheet with id= 25, first strand: chain 'D' and resid 295 through 299 removed outlier: 3.582A pdb=" N GLU D 278 " --> pdb=" O ARG D 296 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N ARG D 298 " --> pdb=" O ARG D 276 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N ARG D 276 " --> pdb=" O ARG D 298 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N ASP D 232 " --> pdb=" O LEU D 277 " (cutoff:3.500A) removed outlier: 5.917A pdb=" N VAL D 233 " --> pdb=" O SER D 408 " (cutoff:3.500A) removed outlier: 3.969A pdb=" N SER D 406 " --> pdb=" O ARG D 235 " (cutoff:3.500A) Processing sheet with id= 26, first strand: chain 'D' and resid 305 through 309 Processing sheet with id= 27, first strand: chain 'D' and resid 329 through 333 Processing sheet with id= 28, first strand: chain 'D' and resid 644 through 650 removed outlier: 4.078A pdb=" N GLN D 645 " --> pdb=" O HIS D1631 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N VAL D 649 " --> pdb=" O PHE D1627 " (cutoff:3.500A) Processing sheet with id= 29, first strand: chain 'D' and resid 652 through 656 removed outlier: 5.758A pdb=" N GLY D 696 " --> pdb=" O VAL D 791 " (cutoff:3.500A) Processing sheet with id= 30, first strand: chain 'D' and resid 766 through 769 removed outlier: 5.328A pdb=" N SER D 767 " --> pdb=" O CYS D 758 " (cutoff:3.500A) removed outlier: 5.164A pdb=" N CYS D 758 " --> pdb=" O SER D 767 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N ASP D 753 " --> pdb=" O VAL D 679 " (cutoff:3.500A) removed outlier: 5.254A pdb=" N TYR D 675 " --> pdb=" O CYS D 757 " (cutoff:3.500A) removed outlier: 5.031A pdb=" N GLU D 676 " --> pdb=" O LEU D 803 " (cutoff:3.500A) removed outlier: 6.289A pdb=" N LYS D 799 " --> pdb=" O ASP D 680 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N VAL D1619 " --> pdb=" O VAL D 800 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N PHE D 802 " --> pdb=" O TRP D1617 " (cutoff:3.500A) removed outlier: 4.891A pdb=" N TRP D1617 " --> pdb=" O PHE D 802 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N LEU D1618 " --> pdb=" O GLU D1613 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N GLU D1613 " --> pdb=" O LEU D1618 " (cutoff:3.500A) Processing sheet with id= 31, first strand: chain 'D' and resid 1148 through 1152 removed outlier: 3.705A pdb=" N GLY D1148 " --> pdb=" O HIS D1146 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N HIS D1146 " --> pdb=" O GLY D1148 " (cutoff:3.500A) removed outlier: 5.074A pdb=" N ALA D1142 " --> pdb=" O TYR D1152 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N GLN D1143 " --> pdb=" O ASP D1138 " (cutoff:3.500A) removed outlier: 6.312A pdb=" N MET D1113 " --> pdb=" O GLY D1139 " (cutoff:3.500A) removed outlier: 6.950A pdb=" N ASP D1112 " --> pdb=" O GLY D1208 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N GLY D1208 " --> pdb=" O ASP D1112 " (cutoff:3.500A) removed outlier: 6.103A pdb=" N ILE D1087 " --> pdb=" O SER D1252 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N ARG D1089 " --> pdb=" O TRP D1250 " (cutoff:3.500A) removed outlier: 6.443A pdb=" N MET D1249 " --> pdb=" O PHE D1603 " (cutoff:3.500A) removed outlier: 5.207A pdb=" N MET D1599 " --> pdb=" O LYS D1253 " (cutoff:3.500A) Processing sheet with id= 32, first strand: chain 'D' and resid 1172 through 1177 removed outlier: 3.966A pdb=" N THR D1172 " --> pdb=" O ASP D1167 " (cutoff:3.500A) removed outlier: 4.682A pdb=" N GLY D1163 " --> pdb=" O THR D1176 " (cutoff:3.500A) removed outlier: 6.838A pdb=" N ALA D1158 " --> pdb=" O THR D1109 " (cutoff:3.500A) removed outlier: 7.245A pdb=" N THR D1109 " --> pdb=" O ALA D1158 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N ALA D1107 " --> pdb=" O ASP D1160 " (cutoff:3.500A) removed outlier: 5.944A pdb=" N PHE D1105 " --> pdb=" O VAL D1162 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N PHE D1103 " --> pdb=" O CYS D1164 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N GLU D1104 " --> pdb=" O ASN D1216 " (cutoff:3.500A) removed outlier: 6.437A pdb=" N VAL D1212 " --> pdb=" O VAL D1108 " (cutoff:3.500A) Processing sheet with id= 33, first strand: chain 'D' and resid 1256 through 1260 removed outlier: 6.717A pdb=" N LEU D1591 " --> pdb=" O SER D1305 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N SER D1305 " --> pdb=" O LEU D1591 " (cutoff:3.500A) removed outlier: 5.145A pdb=" N PHE D1301 " --> pdb=" O LEU D1595 " (cutoff:3.500A) removed outlier: 9.007A pdb=" N SER D1597 " --> pdb=" O ILE D1299 " (cutoff:3.500A) removed outlier: 13.097A pdb=" N ILE D1299 " --> pdb=" O SER D1597 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N MET D1300 " --> pdb=" O ALA D1545 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N ALA D1545 " --> pdb=" O MET D1300 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N ALA D1490 " --> pdb=" O VAL D1441 " (cutoff:3.500A) removed outlier: 5.648A pdb=" N VAL D1443 " --> pdb=" O VAL D1488 " (cutoff:3.500A) removed outlier: 5.276A pdb=" N TRP D1445 " --> pdb=" O TYR D1486 " (cutoff:3.500A) Processing sheet with id= 34, first strand: chain 'D' and resid 1268 through 1274 removed outlier: 4.166A pdb=" N GLU D1269 " --> pdb=" O GLY D1291 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N GLY D1291 " --> pdb=" O GLU D1269 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N SER D1289 " --> pdb=" O THR D1271 " (cutoff:3.500A) removed outlier: 5.326A pdb=" N THR D1286 " --> pdb=" O GLU D1556 " (cutoff:3.500A) removed outlier: 5.803A pdb=" N LYS D1288 " --> pdb=" O GLN D1554 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N GLN D1554 " --> pdb=" O LYS D1288 " (cutoff:3.500A) removed outlier: 6.909A pdb=" N PHE D1290 " --> pdb=" O VAL D1552 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N VAL D1552 " --> pdb=" O PHE D1290 " (cutoff:3.500A) Processing sheet with id= 35, first strand: chain 'D' and resid 1465 through 1469 removed outlier: 4.433A pdb=" N VAL D1465 " --> pdb=" O ARG D1482 " (cutoff:3.500A) removed outlier: 6.178A pdb=" N VAL D1467 " --> pdb=" O ILE D1480 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N LEU D1469 " --> pdb=" O GLU D1478 " (cutoff:3.500A) removed outlier: 4.628A pdb=" N GLU D1478 " --> pdb=" O LEU D1469 " (cutoff:3.500A) Processing sheet with id= 36, first strand: chain 'D' and resid 1506 through 1511 No H-bonds generated for sheet with id= 36 Processing sheet with id= 37, first strand: chain 'D' and resid 2788 through 2792 removed outlier: 3.721A pdb=" N ARG D2789 " --> pdb=" O SER D2905 " (cutoff:3.500A) Processing sheet with id= 38, first strand: chain 'D' and resid 4134 through 4138 Processing sheet with id= 39, first strand: chain 'G' and resid 47 through 52 removed outlier: 5.875A pdb=" N LYS G 34 " --> pdb=" O THR G 52 " (cutoff:3.500A) removed outlier: 5.631A pdb=" N LEU G 22 " --> pdb=" O LEU G 37 " (cutoff:3.500A) removed outlier: 10.531A pdb=" N ALA G 39 " --> pdb=" O VAL G 20 " (cutoff:3.500A) removed outlier: 13.876A pdb=" N VAL G 20 " --> pdb=" O ALA G 39 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N ALA G 215 " --> pdb=" O VAL G 21 " (cutoff:3.500A) Processing sheet with id= 40, first strand: chain 'G' and resid 67 through 70 removed outlier: 6.473A pdb=" N LEU G 120 " --> pdb=" O GLU G 70 " (cutoff:3.500A) Processing sheet with id= 41, first strand: chain 'G' and resid 161 through 164 Processing sheet with id= 42, first strand: chain 'G' and resid 193 through 196 Processing sheet with id= 43, first strand: chain 'G' and resid 244 through 247 Processing sheet with id= 44, first strand: chain 'G' and resid 295 through 299 removed outlier: 3.582A pdb=" N GLU G 278 " --> pdb=" O ARG G 296 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N ARG G 298 " --> pdb=" O ARG G 276 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N ARG G 276 " --> pdb=" O ARG G 298 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N ASP G 232 " --> pdb=" O LEU G 277 " (cutoff:3.500A) removed outlier: 5.918A pdb=" N VAL G 233 " --> pdb=" O SER G 408 " (cutoff:3.500A) removed outlier: 3.969A pdb=" N SER G 406 " --> pdb=" O ARG G 235 " (cutoff:3.500A) Processing sheet with id= 45, first strand: chain 'G' and resid 305 through 309 Processing sheet with id= 46, first strand: chain 'G' and resid 329 through 333 Processing sheet with id= 47, first strand: chain 'G' and resid 644 through 650 removed outlier: 4.078A pdb=" N GLN G 645 " --> pdb=" O HIS G1631 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N VAL G 649 " --> pdb=" O PHE G1627 " (cutoff:3.500A) Processing sheet with id= 48, first strand: chain 'G' and resid 652 through 656 removed outlier: 5.758A pdb=" N GLY G 696 " --> pdb=" O VAL G 791 " (cutoff:3.500A) Processing sheet with id= 49, first strand: chain 'G' and resid 766 through 769 removed outlier: 5.328A pdb=" N SER G 767 " --> pdb=" O CYS G 758 " (cutoff:3.500A) removed outlier: 5.163A pdb=" N CYS G 758 " --> pdb=" O SER G 767 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N ASP G 753 " --> pdb=" O VAL G 679 " (cutoff:3.500A) removed outlier: 5.254A pdb=" N TYR G 675 " --> pdb=" O CYS G 757 " (cutoff:3.500A) removed outlier: 5.030A pdb=" N GLU G 676 " --> pdb=" O LEU G 803 " (cutoff:3.500A) removed outlier: 6.289A pdb=" N LYS G 799 " --> pdb=" O ASP G 680 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N VAL G1619 " --> pdb=" O VAL G 800 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N PHE G 802 " --> pdb=" O TRP G1617 " (cutoff:3.500A) removed outlier: 4.891A pdb=" N TRP G1617 " --> pdb=" O PHE G 802 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N LEU G1618 " --> pdb=" O GLU G1613 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N GLU G1613 " --> pdb=" O LEU G1618 " (cutoff:3.500A) Processing sheet with id= 50, first strand: chain 'G' and resid 1148 through 1152 removed outlier: 3.705A pdb=" N GLY G1148 " --> pdb=" O HIS G1146 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N HIS G1146 " --> pdb=" O GLY G1148 " (cutoff:3.500A) removed outlier: 5.073A pdb=" N ALA G1142 " --> pdb=" O TYR G1152 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N GLN G1143 " --> pdb=" O ASP G1138 " (cutoff:3.500A) removed outlier: 6.313A pdb=" N MET G1113 " --> pdb=" O GLY G1139 " (cutoff:3.500A) removed outlier: 6.949A pdb=" N ASP G1112 " --> pdb=" O GLY G1208 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N GLY G1208 " --> pdb=" O ASP G1112 " (cutoff:3.500A) removed outlier: 6.104A pdb=" N ILE G1087 " --> pdb=" O SER G1252 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N ARG G1089 " --> pdb=" O TRP G1250 " (cutoff:3.500A) removed outlier: 6.444A pdb=" N MET G1249 " --> pdb=" O PHE G1603 " (cutoff:3.500A) removed outlier: 5.207A pdb=" N MET G1599 " --> pdb=" O LYS G1253 " (cutoff:3.500A) Processing sheet with id= 51, first strand: chain 'G' and resid 1172 through 1177 removed outlier: 3.966A pdb=" N THR G1172 " --> pdb=" O ASP G1167 " (cutoff:3.500A) removed outlier: 4.682A pdb=" N GLY G1163 " --> pdb=" O THR G1176 " (cutoff:3.500A) removed outlier: 6.839A pdb=" N ALA G1158 " --> pdb=" O THR G1109 " (cutoff:3.500A) removed outlier: 7.245A pdb=" N THR G1109 " --> pdb=" O ALA G1158 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N ALA G1107 " --> pdb=" O ASP G1160 " (cutoff:3.500A) removed outlier: 5.944A pdb=" N PHE G1105 " --> pdb=" O VAL G1162 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N PHE G1103 " --> pdb=" O CYS G1164 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N GLU G1104 " --> pdb=" O ASN G1216 " (cutoff:3.500A) removed outlier: 6.437A pdb=" N VAL G1212 " --> pdb=" O VAL G1108 " (cutoff:3.500A) Processing sheet with id= 52, first strand: chain 'G' and resid 1256 through 1260 removed outlier: 6.716A pdb=" N LEU G1591 " --> pdb=" O SER G1305 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N SER G1305 " --> pdb=" O LEU G1591 " (cutoff:3.500A) removed outlier: 5.145A pdb=" N PHE G1301 " --> pdb=" O LEU G1595 " (cutoff:3.500A) removed outlier: 9.007A pdb=" N SER G1597 " --> pdb=" O ILE G1299 " (cutoff:3.500A) removed outlier: 13.096A pdb=" N ILE G1299 " --> pdb=" O SER G1597 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N MET G1300 " --> pdb=" O ALA G1545 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N ALA G1545 " --> pdb=" O MET G1300 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N ALA G1490 " --> pdb=" O VAL G1441 " (cutoff:3.500A) removed outlier: 5.648A pdb=" N VAL G1443 " --> pdb=" O VAL G1488 " (cutoff:3.500A) removed outlier: 5.276A pdb=" N TRP G1445 " --> pdb=" O TYR G1486 " (cutoff:3.500A) Processing sheet with id= 53, first strand: chain 'G' and resid 1268 through 1274 removed outlier: 4.166A pdb=" N GLU G1269 " --> pdb=" O GLY G1291 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N GLY G1291 " --> pdb=" O GLU G1269 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N SER G1289 " --> pdb=" O THR G1271 " (cutoff:3.500A) removed outlier: 5.326A pdb=" N THR G1286 " --> pdb=" O GLU G1556 " (cutoff:3.500A) removed outlier: 5.803A pdb=" N LYS G1288 " --> pdb=" O GLN G1554 " (cutoff:3.500A) removed outlier: 4.079A pdb=" N GLN G1554 " --> pdb=" O LYS G1288 " (cutoff:3.500A) removed outlier: 6.908A pdb=" N PHE G1290 " --> pdb=" O VAL G1552 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N VAL G1552 " --> pdb=" O PHE G1290 " (cutoff:3.500A) Processing sheet with id= 54, first strand: chain 'G' and resid 1465 through 1469 removed outlier: 4.433A pdb=" N VAL G1465 " --> pdb=" O ARG G1482 " (cutoff:3.500A) removed outlier: 6.179A pdb=" N VAL G1467 " --> pdb=" O ILE G1480 " (cutoff:3.500A) removed outlier: 3.680A pdb=" N LEU G1469 " --> pdb=" O GLU G1478 " (cutoff:3.500A) removed outlier: 4.628A pdb=" N GLU G1478 " --> pdb=" O LEU G1469 " (cutoff:3.500A) Processing sheet with id= 55, first strand: chain 'G' and resid 1506 through 1511 No H-bonds generated for sheet with id= 55 Processing sheet with id= 56, first strand: chain 'G' and resid 2788 through 2792 removed outlier: 3.721A pdb=" N ARG G2789 " --> pdb=" O SER G2905 " (cutoff:3.500A) Processing sheet with id= 57, first strand: chain 'G' and resid 4134 through 4138 Processing sheet with id= 58, first strand: chain 'J' and resid 47 through 52 removed outlier: 5.875A pdb=" N LYS J 34 " --> pdb=" O THR J 52 " (cutoff:3.500A) removed outlier: 5.631A pdb=" N LEU J 22 " --> pdb=" O LEU J 37 " (cutoff:3.500A) removed outlier: 10.531A pdb=" N ALA J 39 " --> pdb=" O VAL J 20 " (cutoff:3.500A) removed outlier: 13.877A pdb=" N VAL J 20 " --> pdb=" O ALA J 39 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N ALA J 215 " --> pdb=" O VAL J 21 " (cutoff:3.500A) Processing sheet with id= 59, first strand: chain 'J' and resid 67 through 70 removed outlier: 6.472A pdb=" N LEU J 120 " --> pdb=" O GLU J 70 " (cutoff:3.500A) Processing sheet with id= 60, first strand: chain 'J' and resid 161 through 164 Processing sheet with id= 61, first strand: chain 'J' and resid 193 through 196 Processing sheet with id= 62, first strand: chain 'J' and resid 244 through 247 Processing sheet with id= 63, first strand: chain 'J' and resid 295 through 299 removed outlier: 3.581A pdb=" N GLU J 278 " --> pdb=" O ARG J 296 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N ARG J 298 " --> pdb=" O ARG J 276 " (cutoff:3.500A) removed outlier: 3.737A pdb=" N ARG J 276 " --> pdb=" O ARG J 298 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N ASP J 232 " --> pdb=" O LEU J 277 " (cutoff:3.500A) removed outlier: 5.917A pdb=" N VAL J 233 " --> pdb=" O SER J 408 " (cutoff:3.500A) removed outlier: 3.969A pdb=" N SER J 406 " --> pdb=" O ARG J 235 " (cutoff:3.500A) Processing sheet with id= 64, first strand: chain 'J' and resid 305 through 309 Processing sheet with id= 65, first strand: chain 'J' and resid 329 through 333 Processing sheet with id= 66, first strand: chain 'J' and resid 644 through 650 removed outlier: 4.078A pdb=" N GLN J 645 " --> pdb=" O HIS J1631 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N VAL J 649 " --> pdb=" O PHE J1627 " (cutoff:3.500A) Processing sheet with id= 67, first strand: chain 'J' and resid 652 through 656 removed outlier: 5.758A pdb=" N GLY J 696 " --> pdb=" O VAL J 791 " (cutoff:3.500A) Processing sheet with id= 68, first strand: chain 'J' and resid 766 through 769 removed outlier: 5.328A pdb=" N SER J 767 " --> pdb=" O CYS J 758 " (cutoff:3.500A) removed outlier: 5.163A pdb=" N CYS J 758 " --> pdb=" O SER J 767 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N ASP J 753 " --> pdb=" O VAL J 679 " (cutoff:3.500A) removed outlier: 5.254A pdb=" N TYR J 675 " --> pdb=" O CYS J 757 " (cutoff:3.500A) removed outlier: 5.031A pdb=" N GLU J 676 " --> pdb=" O LEU J 803 " (cutoff:3.500A) removed outlier: 6.289A pdb=" N LYS J 799 " --> pdb=" O ASP J 680 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N VAL J1619 " --> pdb=" O VAL J 800 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N PHE J 802 " --> pdb=" O TRP J1617 " (cutoff:3.500A) removed outlier: 4.891A pdb=" N TRP J1617 " --> pdb=" O PHE J 802 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N LEU J1618 " --> pdb=" O GLU J1613 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N GLU J1613 " --> pdb=" O LEU J1618 " (cutoff:3.500A) Processing sheet with id= 69, first strand: chain 'J' and resid 1148 through 1152 removed outlier: 3.705A pdb=" N GLY J1148 " --> pdb=" O HIS J1146 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N HIS J1146 " --> pdb=" O GLY J1148 " (cutoff:3.500A) removed outlier: 5.074A pdb=" N ALA J1142 " --> pdb=" O TYR J1152 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N GLN J1143 " --> pdb=" O ASP J1138 " (cutoff:3.500A) removed outlier: 6.312A pdb=" N MET J1113 " --> pdb=" O GLY J1139 " (cutoff:3.500A) removed outlier: 6.948A pdb=" N ASP J1112 " --> pdb=" O GLY J1208 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N GLY J1208 " --> pdb=" O ASP J1112 " (cutoff:3.500A) removed outlier: 6.104A pdb=" N ILE J1087 " --> pdb=" O SER J1252 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N ARG J1089 " --> pdb=" O TRP J1250 " (cutoff:3.500A) removed outlier: 6.444A pdb=" N MET J1249 " --> pdb=" O PHE J1603 " (cutoff:3.500A) removed outlier: 5.207A pdb=" N MET J1599 " --> pdb=" O LYS J1253 " (cutoff:3.500A) Processing sheet with id= 70, first strand: chain 'J' and resid 1172 through 1177 removed outlier: 3.966A pdb=" N THR J1172 " --> pdb=" O ASP J1167 " (cutoff:3.500A) removed outlier: 4.682A pdb=" N GLY J1163 " --> pdb=" O THR J1176 " (cutoff:3.500A) removed outlier: 6.839A pdb=" N ALA J1158 " --> pdb=" O THR J1109 " (cutoff:3.500A) removed outlier: 7.245A pdb=" N THR J1109 " --> pdb=" O ALA J1158 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N ALA J1107 " --> pdb=" O ASP J1160 " (cutoff:3.500A) removed outlier: 5.945A pdb=" N PHE J1105 " --> pdb=" O VAL J1162 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N PHE J1103 " --> pdb=" O CYS J1164 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N GLU J1104 " --> pdb=" O ASN J1216 " (cutoff:3.500A) removed outlier: 6.436A pdb=" N VAL J1212 " --> pdb=" O VAL J1108 " (cutoff:3.500A) Processing sheet with id= 71, first strand: chain 'J' and resid 1256 through 1260 removed outlier: 6.717A pdb=" N LEU J1591 " --> pdb=" O SER J1305 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N SER J1305 " --> pdb=" O LEU J1591 " (cutoff:3.500A) removed outlier: 5.145A pdb=" N PHE J1301 " --> pdb=" O LEU J1595 " (cutoff:3.500A) removed outlier: 9.007A pdb=" N SER J1597 " --> pdb=" O ILE J1299 " (cutoff:3.500A) removed outlier: 13.096A pdb=" N ILE J1299 " --> pdb=" O SER J1597 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N MET J1300 " --> pdb=" O ALA J1545 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N ALA J1545 " --> pdb=" O MET J1300 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N ALA J1490 " --> pdb=" O VAL J1441 " (cutoff:3.500A) removed outlier: 5.648A pdb=" N VAL J1443 " --> pdb=" O VAL J1488 " (cutoff:3.500A) removed outlier: 5.276A pdb=" N TRP J1445 " --> pdb=" O TYR J1486 " (cutoff:3.500A) Processing sheet with id= 72, first strand: chain 'J' and resid 1268 through 1274 removed outlier: 4.166A pdb=" N GLU J1269 " --> pdb=" O GLY J1291 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N GLY J1291 " --> pdb=" O GLU J1269 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N SER J1289 " --> pdb=" O THR J1271 " (cutoff:3.500A) removed outlier: 5.326A pdb=" N THR J1286 " --> pdb=" O GLU J1556 " (cutoff:3.500A) removed outlier: 5.803A pdb=" N LYS J1288 " --> pdb=" O GLN J1554 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N GLN J1554 " --> pdb=" O LYS J1288 " (cutoff:3.500A) removed outlier: 6.909A pdb=" N PHE J1290 " --> pdb=" O VAL J1552 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N VAL J1552 " --> pdb=" O PHE J1290 " (cutoff:3.500A) Processing sheet with id= 73, first strand: chain 'J' and resid 1465 through 1469 removed outlier: 4.433A pdb=" N VAL J1465 " --> pdb=" O ARG J1482 " (cutoff:3.500A) removed outlier: 6.179A pdb=" N VAL J1467 " --> pdb=" O ILE J1480 " (cutoff:3.500A) removed outlier: 3.680A pdb=" N LEU J1469 " --> pdb=" O GLU J1478 " (cutoff:3.500A) removed outlier: 4.628A pdb=" N GLU J1478 " --> pdb=" O LEU J1469 " (cutoff:3.500A) Processing sheet with id= 74, first strand: chain 'J' and resid 1506 through 1511 No H-bonds generated for sheet with id= 74 Processing sheet with id= 75, first strand: chain 'J' and resid 2788 through 2792 removed outlier: 3.721A pdb=" N ARG J2789 " --> pdb=" O SER J2905 " (cutoff:3.500A) Processing sheet with id= 76, first strand: chain 'J' and resid 4134 through 4138 Processing sheet with id= 77, first strand: chain 'B' and resid 3 through 7 removed outlier: 4.250A pdb=" N GLU B 3 " --> pdb=" O THR B 75 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N THR B 75 " --> pdb=" O GLU B 3 " (cutoff:3.500A) removed outlier: 6.880A pdb=" N ARG B 71 " --> pdb=" O ILE B 7 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N LEU B 97 " --> pdb=" O CYS B 76 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N PHE B 48 " --> pdb=" O CYS B 22 " (cutoff:3.500A) Processing sheet with id= 78, first strand: chain 'E' and resid 3 through 7 removed outlier: 4.250A pdb=" N GLU E 3 " --> pdb=" O THR E 75 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N THR E 75 " --> pdb=" O GLU E 3 " (cutoff:3.500A) removed outlier: 6.880A pdb=" N ARG E 71 " --> pdb=" O ILE E 7 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N LEU E 97 " --> pdb=" O CYS E 76 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N PHE E 48 " --> pdb=" O CYS E 22 " (cutoff:3.500A) Processing sheet with id= 79, first strand: chain 'H' and resid 3 through 7 removed outlier: 4.250A pdb=" N GLU H 3 " --> pdb=" O THR H 75 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N THR H 75 " --> pdb=" O GLU H 3 " (cutoff:3.500A) removed outlier: 6.880A pdb=" N ARG H 71 " --> pdb=" O ILE H 7 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N LEU H 97 " --> pdb=" O CYS H 76 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N PHE H 48 " --> pdb=" O CYS H 22 " (cutoff:3.500A) Processing sheet with id= 80, first strand: chain 'K' and resid 3 through 7 removed outlier: 4.251A pdb=" N GLU K 3 " --> pdb=" O THR K 75 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N THR K 75 " --> pdb=" O GLU K 3 " (cutoff:3.500A) removed outlier: 6.880A pdb=" N ARG K 71 " --> pdb=" O ILE K 7 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N LEU K 97 " --> pdb=" O CYS K 76 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N PHE K 48 " --> pdb=" O CYS K 22 " (cutoff:3.500A) 4989 hydrogen bonds defined for protein. 14823 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 0 hydrogen bonds 0 hydrogen bond angles 0 basepair planarities 0 basepair parallelities 0 stacking parallelities Total time for adding SS restraints: 62.40 Time building geometry restraints manager: 34.27 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.18 - 1.31: 18928 1.31 - 1.43: 29883 1.43 - 1.56: 64399 1.56 - 1.69: 22 1.69 - 1.81: 1064 Bond restraints: 114296 Sorted by residual: bond pdb=" CA LYS A4522 " pdb=" C LYS A4522 " ideal model delta sigma weight residual 1.522 1.363 0.158 1.21e-02 6.83e+03 1.71e+02 bond pdb=" N TYR A4521 " pdb=" CA TYR A4521 " ideal model delta sigma weight residual 1.458 1.610 -0.152 1.19e-02 7.06e+03 1.63e+02 bond pdb=" C4 ATP J6002 " pdb=" C5 ATP J6002 " ideal model delta sigma weight residual 1.388 1.465 -0.077 1.00e-02 1.00e+04 5.94e+01 bond pdb=" C4 ATP G6002 " pdb=" C5 ATP G6002 " ideal model delta sigma weight residual 1.388 1.465 -0.077 1.00e-02 1.00e+04 5.94e+01 bond pdb=" C4 ATP D6002 " pdb=" C5 ATP D6002 " ideal model delta sigma weight residual 1.388 1.465 -0.077 1.00e-02 1.00e+04 5.94e+01 ... (remaining 114291 not shown) Histogram of bond angle deviations from ideal: 94.43 - 103.65: 1389 103.65 - 112.86: 61199 112.86 - 122.07: 70520 122.07 - 131.28: 21152 131.28 - 140.49: 332 Bond angle restraints: 154592 Sorted by residual: angle pdb=" N ARG D4823 " pdb=" CA ARG D4823 " pdb=" C ARG D4823 " ideal model delta sigma weight residual 113.97 139.02 -25.05 1.28e+00 6.10e-01 3.83e+02 angle pdb=" PB ATP A6002 " pdb=" O3B ATP A6002 " pdb=" PG ATP A6002 " ideal model delta sigma weight residual 139.87 122.02 17.85 1.00e+00 1.00e+00 3.19e+02 angle pdb=" PB ATP G6002 " pdb=" O3B ATP G6002 " pdb=" PG ATP G6002 " ideal model delta sigma weight residual 139.87 122.02 17.85 1.00e+00 1.00e+00 3.19e+02 angle pdb=" PB ATP J6002 " pdb=" O3B ATP J6002 " pdb=" PG ATP J6002 " ideal model delta sigma weight residual 139.87 122.02 17.85 1.00e+00 1.00e+00 3.19e+02 angle pdb=" PB ATP D6002 " pdb=" O3B ATP D6002 " pdb=" PG ATP D6002 " ideal model delta sigma weight residual 139.87 122.02 17.85 1.00e+00 1.00e+00 3.19e+02 ... (remaining 154587 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 17.96: 60102 17.96 - 35.91: 6589 35.91 - 53.87: 1152 53.87 - 71.82: 258 71.82 - 89.78: 92 Dihedral angle restraints: 68193 sinusoidal: 25761 harmonic: 42432 Sorted by residual: dihedral pdb=" CA GLU J1847 " pdb=" C GLU J1847 " pdb=" N PRO J1848 " pdb=" CA PRO J1848 " ideal model delta harmonic sigma weight residual -180.00 -114.62 -65.38 0 5.00e+00 4.00e-02 1.71e+02 dihedral pdb=" CA GLU A1847 " pdb=" C GLU A1847 " pdb=" N PRO A1848 " pdb=" CA PRO A1848 " ideal model delta harmonic sigma weight residual 180.00 -114.63 -65.37 0 5.00e+00 4.00e-02 1.71e+02 dihedral pdb=" CA GLU G1847 " pdb=" C GLU G1847 " pdb=" N PRO G1848 " pdb=" CA PRO G1848 " ideal model delta harmonic sigma weight residual -180.00 -114.63 -65.37 0 5.00e+00 4.00e-02 1.71e+02 ... (remaining 68190 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.100: 16334 0.100 - 0.201: 1058 0.201 - 0.301: 36 0.301 - 0.401: 6 0.401 - 0.502: 2 Chirality restraints: 17436 Sorted by residual: chirality pdb=" CA TYR A4521 " pdb=" N TYR A4521 " pdb=" C TYR A4521 " pdb=" CB TYR A4521 " both_signs ideal model delta sigma weight residual False 2.51 3.01 -0.50 2.00e-01 2.50e+01 6.29e+00 chirality pdb=" CA ARG D4823 " pdb=" N ARG D4823 " pdb=" C ARG D4823 " pdb=" CB ARG D4823 " both_signs ideal model delta sigma weight residual False 2.51 2.03 0.48 2.00e-01 2.50e+01 5.75e+00 chirality pdb=" CA ALA D4824 " pdb=" N ALA D4824 " pdb=" C ALA D4824 " pdb=" CB ALA D4824 " both_signs ideal model delta sigma weight residual False 2.48 2.88 -0.39 2.00e-01 2.50e+01 3.81e+00 ... (remaining 17433 not shown) Planarity restraints: 19880 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" C PRO G 816 " 0.059 5.00e-02 4.00e+02 8.88e-02 1.26e+01 pdb=" N PRO G 817 " -0.154 5.00e-02 4.00e+02 pdb=" CA PRO G 817 " 0.046 5.00e-02 4.00e+02 pdb=" CD PRO G 817 " 0.048 5.00e-02 4.00e+02 delta sigma weight rms_deltas residual plane pdb=" C PRO A 816 " -0.059 5.00e-02 4.00e+02 8.87e-02 1.26e+01 pdb=" N PRO A 817 " 0.153 5.00e-02 4.00e+02 pdb=" CA PRO A 817 " -0.046 5.00e-02 4.00e+02 pdb=" CD PRO A 817 " -0.048 5.00e-02 4.00e+02 delta sigma weight rms_deltas residual plane pdb=" C PRO J 816 " 0.059 5.00e-02 4.00e+02 8.87e-02 1.26e+01 pdb=" N PRO J 817 " -0.153 5.00e-02 4.00e+02 pdb=" CA PRO J 817 " 0.046 5.00e-02 4.00e+02 pdb=" CD PRO J 817 " 0.048 5.00e-02 4.00e+02 ... (remaining 19877 not shown) Histogram of nonbonded interaction distances: 2.22 - 2.75: 19121 2.75 - 3.29: 109054 3.29 - 3.83: 193080 3.83 - 4.36: 221349 4.36 - 4.90: 353745 Nonbonded interactions: 896349 Sorted by model distance: nonbonded pdb=" O VAL A4822 " pdb=" N ALA A4824 " model vdw 2.218 2.520 nonbonded pdb=" CB ALA A4861 " pdb=" NE2 GLN D4864 " model vdw 2.220 3.540 nonbonded pdb=" CE2 PHE A4852 " pdb=" O ARG D4823 " model vdw 2.223 3.340 nonbonded pdb=" O VAL J4822 " pdb=" N ALA J4824 " model vdw 2.224 2.520 nonbonded pdb=" CB ALA D4861 " pdb=" NE2 GLN G4864 " model vdw 2.225 3.540 ... (remaining 896344 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model Found NCS groups: ncs_group { reference = chain 'A' selection = chain 'D' selection = chain 'G' selection = chain 'J' } ncs_group { reference = chain 'B' selection = chain 'E' selection = chain 'H' selection = chain 'K' } ncs_group { reference = chain 'C' selection = chain 'F' selection = chain 'I' selection = chain 'L' } Set up NCS constraints No NCS constraints will be used in refinement. Set refine NCS operators Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=0.99 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as group one per residue Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 2.740 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.000 Assert all atoms have isotropic ADPs: 0.010 Construct map_model_manager: 0.060 Extract box with map and model: 16.910 Check model and map are aligned: 1.220 Set scattering table: 0.750 Process input model: 260.750 Find NCS groups from input model: 5.620 Set up NCS constraints: 0.760 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.000 Extract rigid body selections: 0.000 Check and reset occupancies: 0.010 Load rotamer database and sin/cos tables:2.040 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 290.870 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.8164 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.006 0.158 114296 Z= 0.390 Angle : 1.007 25.052 154592 Z= 0.577 Chirality : 0.052 0.502 17436 Planarity : 0.007 0.089 19880 Dihedral : 15.693 89.780 40665 Min Nonbonded Distance : 2.218 Molprobity Statistics. All-atom Clashscore : 10.69 Ramachandran Plot: Outliers : 0.23 % Allowed : 10.25 % Favored : 89.52 % Rotamer: Outliers : 0.51 % Allowed : 11.02 % Favored : 88.47 % Cbeta Deviations : 0.07 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 3.15 % Twisted General : 0.55 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -5.44 (0.05), residues: 14180 helix: -3.62 (0.04), residues: 6756 sheet: -3.34 (0.12), residues: 1188 loop : -3.54 (0.06), residues: 6236 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.025 0.002 TRP G4950 HIS 0.010 0.002 HIS G2090 PHE 0.026 0.002 PHE A 727 TYR 0.032 0.002 TYR J4645 ARG 0.009 0.001 ARG G4504 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 28360 Ramachandran restraints generated. 14180 Oldfield, 0 Emsley, 14180 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 28360 Ramachandran restraints generated. 14180 Oldfield, 0 Emsley, 14180 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 1488 residues out of total 12888 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 61 poor density : 1427 time to evaluate : 9.352 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash Traceback (most recent call last): File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/build/../modules/phenix/phenix/command_line/real_space_refine.py", line 8, in run_program(real_space_refine.Program) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/iotbx/cli_parser.py", line 931, in run_program task.run() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/programs/real_space_refine.py", line 191, in run log = self.logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/rsr/wrappers.py", line 58, in __init__ log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 294, in __init__ self.caller(self.optimize_sidechains) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 312, in caller func() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 600, in optimize_sidechains log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 83, in __init__ rotatable_hd = self.rotatable_hd) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 180, in run_one pdb_hierarchy = self.run_one_one(args=args) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 131, in run_one_one log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 99, in __init__ self.loop(function = self.one_residue_iteration) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 209, in loop function(residue = residue) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 196, in one_residue_iteration log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 172, in __init__ self.fit_proline() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 217, in fit_proline for rotamer, sites_cart in rotamer_iterator: TypeError: 'NoneType' object is not iterable