Starting phenix.real_space_refine on Tue Mar 12 11:10:53 2024 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiy_9837/03_2024/6jiy_9837_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiy_9837/03_2024/6jiy_9837.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=3.9 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiy_9837/03_2024/6jiy_9837.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiy_9837/03_2024/6jiy_9837.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiy_9837/03_2024/6jiy_9837_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jiy_9837/03_2024/6jiy_9837_updated.pdb" } resolution = 3.9 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= 0.000 sd= 0.006 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 7 Type Number sf(0) Gaussians Ca 20 9.91 5 Zn 4 6.06 5 P 12 5.49 5 S 692 5.16 5 C 73264 2.51 5 N 19744 2.21 5 O 21552 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "A ASP 18": "OD1" <-> "OD2" Residue "A GLU 19": "OE1" <-> "OE2" Residue "A PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 80": "OE1" <-> "OE2" Residue "A PHE 145": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 152": "OD1" <-> "OD2" Residue "A ARG 190": "NH1" <-> "NH2" Residue "A ASP 232": "OD1" <-> "OD2" Residue "A GLU 251": "OE1" <-> "OE2" Residue "A ARG 257": "NH1" <-> "NH2" Residue "A TYR 356": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 414": "NH1" <-> "NH2" Residue "A PHE 426": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 428": "NH1" <-> "NH2" Residue "A GLU 471": "OE1" <-> "OE2" Residue "A ARG 480": "NH1" <-> "NH2" Residue "A GLU 591": "OE1" <-> "OE2" Residue "A TYR 675": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 712": "OE1" <-> "OE2" Residue "A PHE 813": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 839": "OE1" <-> "OE2" Residue "A ASP 982": "OD1" <-> "OD2" Residue "A PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 1220": "OD1" <-> "OD2" Residue "A PHE 1290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1457": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 1531": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 1613": "OE1" <-> "OE2" Residue "A GLU 1623": "OE1" <-> "OE2" Residue "A PHE 1627": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1739": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 1807": "NH1" <-> "NH2" Residue "A GLU 1847": "OE1" <-> "OE2" Residue "A ARG 1942": "NH1" <-> "NH2" Residue "A ARG 2069": "NH1" <-> "NH2" Residue "A GLU 2077": "OE1" <-> "OE2" Residue "A ASP 2078": "OD1" <-> "OD2" Residue "A GLU 2080": "OE1" <-> "OE2" Residue "A TYR 2107": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 2216": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 2323": "NH1" <-> "NH2" Residue "A ARG 2327": "NH1" <-> "NH2" Residue "A ARG 2519": "NH1" <-> "NH2" Residue "A TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 2708": "OD1" <-> "OD2" Residue "A GLU 2716": "OE1" <-> "OE2" Residue "A TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 2778": "OE1" <-> "OE2" Residue "A GLU 2791": "OE1" <-> "OE2" Residue "A GLU 2860": "OE1" <-> "OE2" Residue "A GLU 2882": "OE1" <-> "OE2" Residue "A GLU 2888": "OE1" <-> "OE2" Residue "A TYR 2902": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 3610": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 3616": "NH1" <-> "NH2" Residue "A TYR 3636": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 3643": "OE1" <-> "OE2" Residue "A ASP 3644": "OD1" <-> "OD2" Residue "A TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 3780": "OE1" <-> "OE2" Residue "A ARG 3811": "NH1" <-> "NH2" Residue "A GLU 3835": "OE1" <-> "OE2" Residue "A PHE 4021": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 4081": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4147": "OE1" <-> "OE2" Residue "A ARG 4148": "NH1" <-> "NH2" Residue "A TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4158": "NH1" <-> "NH2" Residue "A GLU 4162": "OE1" <-> "OE2" Residue "A GLU 4168": "OE1" <-> "OE2" Residue "A GLU 4180": "OE1" <-> "OE2" Residue "A GLU 4183": "OE1" <-> "OE2" Residue "A GLU 4200": "OE1" <-> "OE2" Residue "A ARG 4498": "NH1" <-> "NH2" Residue "A ARG 4504": "NH1" <-> "NH2" Residue "A PHE 4520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4601": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 4617": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4790": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4791": "NH1" <-> "NH2" Residue "A PHE 4793": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4823": "NH1" <-> "NH2" Residue "A ASP 4830": "OD1" <-> "OD2" Residue "A ASP 4848": "OD1" <-> "OD2" Residue "A TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 4957": "OD1" <-> "OD2" Residue "B ARG 13": "NH1" <-> "NH2" Residue "C PHE 20": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 18": "OD1" <-> "OD2" Residue "D GLU 19": "OE1" <-> "OE2" Residue "D PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 80": "OE1" <-> "OE2" Residue "D PHE 145": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 152": "OD1" <-> "OD2" Residue "D ARG 190": "NH1" <-> "NH2" Residue "D ASP 232": "OD1" <-> "OD2" Residue "D GLU 251": "OE1" <-> "OE2" Residue "D ARG 257": "NH1" <-> "NH2" Residue "D TYR 356": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 414": "NH1" <-> "NH2" Residue "D PHE 426": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 428": "NH1" <-> "NH2" Residue "D GLU 471": "OE1" <-> "OE2" Residue "D ARG 480": "NH1" <-> "NH2" Residue "D GLU 591": "OE1" <-> "OE2" Residue "D TYR 675": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 712": "OE1" <-> "OE2" Residue "D PHE 813": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 839": "OE1" <-> "OE2" Residue "D ASP 982": "OD1" <-> "OD2" Residue "D PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 1220": "OD1" <-> "OD2" Residue "D PHE 1290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 1457": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 1531": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 1613": "OE1" <-> "OE2" Residue "D GLU 1623": "OE1" <-> "OE2" Residue "D PHE 1627": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 1739": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 1807": "NH1" <-> "NH2" Residue "D GLU 1847": "OE1" <-> "OE2" Residue "D ARG 1942": "NH1" <-> "NH2" Residue "D ARG 2069": "NH1" <-> "NH2" Residue "D GLU 2077": "OE1" <-> "OE2" Residue "D ASP 2078": "OD1" <-> "OD2" Residue "D GLU 2080": "OE1" <-> "OE2" Residue "D TYR 2107": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 2216": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 2323": "NH1" <-> "NH2" Residue "D ARG 2327": "NH1" <-> "NH2" Residue "D ARG 2519": "NH1" <-> "NH2" Residue "D TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 2708": "OD1" <-> "OD2" Residue "D GLU 2716": "OE1" <-> "OE2" Residue "D TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 2778": "OE1" <-> "OE2" Residue "D GLU 2791": "OE1" <-> "OE2" Residue "D GLU 2860": "OE1" <-> "OE2" Residue "D GLU 2882": "OE1" <-> "OE2" Residue "D GLU 2888": "OE1" <-> "OE2" Residue "D TYR 2902": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 3610": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 3616": "NH1" <-> "NH2" Residue "D TYR 3636": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 3643": "OE1" <-> "OE2" Residue "D ASP 3644": "OD1" <-> "OD2" Residue "D TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 3780": "OE1" <-> "OE2" Residue "D ARG 3811": "NH1" <-> "NH2" Residue "D GLU 3835": "OE1" <-> "OE2" Residue "D PHE 4021": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 4081": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 4147": "OE1" <-> "OE2" Residue "D ARG 4148": "NH1" <-> "NH2" Residue "D TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 4158": "NH1" <-> "NH2" Residue "D GLU 4162": "OE1" <-> "OE2" Residue "D GLU 4168": "OE1" <-> "OE2" Residue "D GLU 4180": "OE1" <-> "OE2" Residue "D GLU 4183": "OE1" <-> "OE2" Residue "D GLU 4200": "OE1" <-> "OE2" Residue "D ARG 4498": "NH1" <-> "NH2" Residue "D ARG 4504": "NH1" <-> "NH2" Residue "D PHE 4520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 4601": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 4617": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 4790": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 4791": "NH1" <-> "NH2" Residue "D PHE 4793": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 4823": "NH1" <-> "NH2" Residue "D ASP 4830": "OD1" <-> "OD2" Residue "D TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 4957": "OD1" <-> "OD2" Residue "E ARG 13": "NH1" <-> "NH2" Residue "F PHE 20": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 18": "OD1" <-> "OD2" Residue "G GLU 19": "OE1" <-> "OE2" Residue "G PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 80": "OE1" <-> "OE2" Residue "G PHE 145": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 152": "OD1" <-> "OD2" Residue "G ARG 190": "NH1" <-> "NH2" Residue "G ASP 232": "OD1" <-> "OD2" Residue "G GLU 251": "OE1" <-> "OE2" Residue "G ARG 257": "NH1" <-> "NH2" Residue "G TYR 356": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 414": "NH1" <-> "NH2" Residue "G PHE 426": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 428": "NH1" <-> "NH2" Residue "G GLU 471": "OE1" <-> "OE2" Residue "G ARG 480": "NH1" <-> "NH2" Residue "G GLU 591": "OE1" <-> "OE2" Residue "G TYR 675": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 712": "OE1" <-> "OE2" Residue "G PHE 813": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 839": "OE1" <-> "OE2" Residue "G ASP 982": "OD1" <-> "OD2" Residue "G PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 1220": "OD1" <-> "OD2" Residue "G PHE 1290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1457": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 1531": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 1613": "OE1" <-> "OE2" Residue "G GLU 1623": "OE1" <-> "OE2" Residue "G PHE 1627": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1739": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 1807": "NH1" <-> "NH2" Residue "G GLU 1847": "OE1" <-> "OE2" Residue "G ARG 1942": "NH1" <-> "NH2" Residue "G ARG 2069": "NH1" <-> "NH2" Residue "G GLU 2077": "OE1" <-> "OE2" Residue "G ASP 2078": "OD1" <-> "OD2" Residue "G GLU 2080": "OE1" <-> "OE2" Residue "G TYR 2107": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 2216": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 2323": "NH1" <-> "NH2" Residue "G ARG 2327": "NH1" <-> "NH2" Residue "G ARG 2519": "NH1" <-> "NH2" Residue "G TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 2708": "OD1" <-> "OD2" Residue "G GLU 2716": "OE1" <-> "OE2" Residue "G TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 2778": "OE1" <-> "OE2" Residue "G GLU 2791": "OE1" <-> "OE2" Residue "G GLU 2860": "OE1" <-> "OE2" Residue "G GLU 2882": "OE1" <-> "OE2" Residue "G GLU 2888": "OE1" <-> "OE2" Residue "G TYR 2902": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 3610": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 3616": "NH1" <-> "NH2" Residue "G TYR 3636": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 3643": "OE1" <-> "OE2" Residue "G ASP 3644": "OD1" <-> "OD2" Residue "G TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 3780": "OE1" <-> "OE2" Residue "G ARG 3811": "NH1" <-> "NH2" Residue "G GLU 3835": "OE1" <-> "OE2" Residue "G PHE 4021": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 4081": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 4147": "OE1" <-> "OE2" Residue "G ARG 4148": "NH1" <-> "NH2" Residue "G TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4158": "NH1" <-> "NH2" Residue "G GLU 4162": "OE1" <-> "OE2" Residue "G GLU 4168": "OE1" <-> "OE2" Residue "G GLU 4180": "OE1" <-> "OE2" Residue "G GLU 4183": "OE1" <-> "OE2" Residue "G GLU 4200": "OE1" <-> "OE2" Residue "G ARG 4498": "NH1" <-> "NH2" Residue "G ARG 4504": "NH1" <-> "NH2" Residue "G PHE 4520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4601": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 4617": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4790": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4791": "NH1" <-> "NH2" Residue "G PHE 4793": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4823": "NH1" <-> "NH2" Residue "G ASP 4830": "OD1" <-> "OD2" Residue "G TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 4957": "OD1" <-> "OD2" Residue "H ARG 13": "NH1" <-> "NH2" Residue "I PHE 20": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 18": "OD1" <-> "OD2" Residue "J GLU 19": "OE1" <-> "OE2" Residue "J PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 80": "OE1" <-> "OE2" Residue "J PHE 145": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 152": "OD1" <-> "OD2" Residue "J ARG 190": "NH1" <-> "NH2" Residue "J ASP 232": "OD1" <-> "OD2" Residue "J GLU 251": "OE1" <-> "OE2" Residue "J ARG 257": "NH1" <-> "NH2" Residue "J TYR 356": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 414": "NH1" <-> "NH2" Residue "J PHE 426": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 428": "NH1" <-> "NH2" Residue "J GLU 471": "OE1" <-> "OE2" Residue "J ARG 480": "NH1" <-> "NH2" Residue "J GLU 591": "OE1" <-> "OE2" Residue "J TYR 675": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 712": "OE1" <-> "OE2" Residue "J PHE 813": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 839": "OE1" <-> "OE2" Residue "J ASP 982": "OD1" <-> "OD2" Residue "J PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 1220": "OD1" <-> "OD2" Residue "J PHE 1290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 1457": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 1531": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 1613": "OE1" <-> "OE2" Residue "J GLU 1623": "OE1" <-> "OE2" Residue "J PHE 1627": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 1739": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 1807": "NH1" <-> "NH2" Residue "J GLU 1847": "OE1" <-> "OE2" Residue "J ARG 1942": "NH1" <-> "NH2" Residue "J ARG 2069": "NH1" <-> "NH2" Residue "J GLU 2077": "OE1" <-> "OE2" Residue "J ASP 2078": "OD1" <-> "OD2" Residue "J GLU 2080": "OE1" <-> "OE2" Residue "J TYR 2107": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 2216": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 2323": "NH1" <-> "NH2" Residue "J ARG 2327": "NH1" <-> "NH2" Residue "J ARG 2519": "NH1" <-> "NH2" Residue "J TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 2708": "OD1" <-> "OD2" Residue "J GLU 2716": "OE1" <-> "OE2" Residue "J TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 2778": "OE1" <-> "OE2" Residue "J GLU 2791": "OE1" <-> "OE2" Residue "J GLU 2860": "OE1" <-> "OE2" Residue "J GLU 2882": "OE1" <-> "OE2" Residue "J GLU 2888": "OE1" <-> "OE2" Residue "J TYR 2902": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 3610": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 3616": "NH1" <-> "NH2" Residue "J TYR 3636": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 3643": "OE1" <-> "OE2" Residue "J ASP 3644": "OD1" <-> "OD2" Residue "J TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 3780": "OE1" <-> "OE2" Residue "J ARG 3811": "NH1" <-> "NH2" Residue "J GLU 3835": "OE1" <-> "OE2" Residue "J PHE 4021": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 4081": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 4147": "OE1" <-> "OE2" Residue "J ARG 4148": "NH1" <-> "NH2" Residue "J TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 4158": "NH1" <-> "NH2" Residue "J GLU 4162": "OE1" <-> "OE2" Residue "J GLU 4168": "OE1" <-> "OE2" Residue "J GLU 4180": "OE1" <-> "OE2" Residue "J GLU 4183": "OE1" <-> "OE2" Residue "J GLU 4200": "OE1" <-> "OE2" Residue "J ARG 4498": "NH1" <-> "NH2" Residue "J ARG 4504": "NH1" <-> "NH2" Residue "J PHE 4520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 4601": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 4617": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 4790": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 4791": "NH1" <-> "NH2" Residue "J PHE 4793": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 4823": "NH1" <-> "NH2" Residue "J ASP 4830": "OD1" <-> "OD2" Residue "J TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 4957": "OD1" <-> "OD2" Residue "K ARG 13": "NH1" <-> "NH2" Residue "L PHE 20": "CD1" <-> "CD2" "CE1" <-> "CE2" Time to flip residues: 0.25s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/chem_data/mon_lib" Total number of atoms: 115288 Number of models: 1 Model: "" Number of chains: 20 Chain: "A" Number of atoms: 26877 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3521, 26877 Classifications: {'peptide': 3521} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 351} Link IDs: {'CIS': 1, 'PTRANS': 122, 'TRANS': 3397} Chain breaks: 57 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1434 Unresolved non-hydrogen angles: 1825 Unresolved non-hydrogen dihedrals: 1189 Unresolved non-hydrogen chiralities: 125 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 24, 'PHE:plan': 18, 'GLU:plan': 37, 'ARG:plan': 26} Unresolved non-hydrogen planarities: 782 Chain: "B" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "C" Number of atoms: 1075 Number of conformers: 1 Conformer: "" Number of residues, atoms: 136, 1075 Classifications: {'peptide': 136} Link IDs: {'PTRANS': 2, 'TRANS': 133} Chain breaks: 1 Chain: "D" Number of atoms: 26877 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3521, 26877 Classifications: {'peptide': 3521} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 351} Link IDs: {'CIS': 1, 'PTRANS': 122, 'TRANS': 3397} Chain breaks: 57 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1434 Unresolved non-hydrogen angles: 1825 Unresolved non-hydrogen dihedrals: 1190 Unresolved non-hydrogen chiralities: 125 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 24, 'PHE:plan': 18, 'GLU:plan': 37, 'ARG:plan': 26} Unresolved non-hydrogen planarities: 782 Chain: "E" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "F" Number of atoms: 1075 Number of conformers: 1 Conformer: "" Number of residues, atoms: 136, 1075 Classifications: {'peptide': 136} Link IDs: {'PTRANS': 2, 'TRANS': 133} Chain breaks: 1 Chain: "G" Number of atoms: 26877 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3521, 26877 Classifications: {'peptide': 3521} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 351} Link IDs: {'CIS': 1, 'PTRANS': 122, 'TRANS': 3397} Chain breaks: 57 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1434 Unresolved non-hydrogen angles: 1825 Unresolved non-hydrogen dihedrals: 1190 Unresolved non-hydrogen chiralities: 125 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 24, 'PHE:plan': 18, 'GLU:plan': 37, 'ARG:plan': 26} Unresolved non-hydrogen planarities: 782 Chain: "H" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "I" Number of atoms: 1075 Number of conformers: 1 Conformer: "" Number of residues, atoms: 136, 1075 Classifications: {'peptide': 136} Link IDs: {'PTRANS': 2, 'TRANS': 133} Chain breaks: 1 Chain: "J" Number of atoms: 26877 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3521, 26877 Classifications: {'peptide': 3521} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 351} Link IDs: {'CIS': 1, 'PTRANS': 122, 'TRANS': 3397} Chain breaks: 57 Unresolved chain link angles: 14 Unresolved non-hydrogen bonds: 1434 Unresolved non-hydrogen angles: 1825 Unresolved non-hydrogen dihedrals: 1190 Unresolved non-hydrogen chiralities: 125 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 19, 'TRP:plan': 2, 'ASP:plan': 24, 'PHE:plan': 18, 'GLU:plan': 37, 'ARG:plan': 26} Unresolved non-hydrogen planarities: 782 Chain: "K" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "L" Number of atoms: 1075 Number of conformers: 1 Conformer: "" Number of residues, atoms: 136, 1075 Classifications: {'peptide': 136} Link IDs: {'PTRANS': 2, 'TRANS': 133} Chain breaks: 1 Chain: "A" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "C" Number of atoms: 4 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 4 Unusual residues: {' CA': 4} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "D" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "F" Number of atoms: 4 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 4 Unusual residues: {' CA': 4} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "G" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "I" Number of atoms: 4 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 4 Unusual residues: {' CA': 4} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "J" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "L" Number of atoms: 4 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 4 Unusual residues: {' CA': 4} Classifications: {'undetermined': 4} Link IDs: {None: 3} List of CYS excluded from plausible disulfide bonds: (reason: may participate in coordination) ATOM 26240 SG CYS A4889 206.671 207.463 83.687 1.00 59.69 S ATOM 26265 SG CYS A4892 208.017 205.370 86.924 1.00 44.97 S ATOM 55011 SG CYS D4889 207.464 177.381 83.699 1.00 59.69 S ATOM 55036 SG CYS D4892 205.372 176.034 86.936 1.00 44.97 S ATOM 83782 SG CYS G4889 177.376 176.579 83.697 1.00 59.69 S ATOM 83807 SG CYS G4892 176.029 178.672 86.934 1.00 44.97 S ATOM A09OP SG CYS J4889 176.566 206.683 83.703 1.00 59.69 S ATOM A09PE SG CYS J4892 178.659 208.029 86.940 1.00 44.97 S Residues with excluded nonbonded symmetry interactions: 4 residue: pdb=" N HIS B 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS B 87 " occ=0.99 residue: pdb=" N HIS E 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS E 87 " occ=0.99 residue: pdb=" N HIS H 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS H 87 " occ=0.99 residue: pdb=" N HIS K 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS K 87 " occ=0.99 Time building chain proxies: 42.37, per 1000 atoms: 0.37 Number of scatterers: 115288 At special positions: 0 Unit cell: (385.123, 385.123, 210.563, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 7 Type Number sf(0) Zn 4 29.99 Ca 20 19.99 S 692 16.00 P 12 15.00 O 21552 8.00 N 19744 7.00 C 73264 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=0, symmetry=0 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=0, symmetry=0 Time building additional restraints: 30.58 Conformation dependent library (CDL) restraints added in 15.3 seconds Dynamic metal coordination Zn2+ tetrahedral coordination pdb=" ZN A6000 " pdb="ZN ZN A6000 " - pdb=" SG CYS A4892 " pdb="ZN ZN A6000 " - pdb=" SG CYS A4889 " pdb="ZN ZN A6000 " - pdb=" NE2 HIS A4909 " pdb=" ZN D6000 " pdb="ZN ZN D6000 " - pdb=" SG CYS D4892 " pdb="ZN ZN D6000 " - pdb=" SG CYS D4889 " pdb="ZN ZN D6000 " - pdb=" NE2 HIS D4909 " pdb=" ZN G6000 " pdb="ZN ZN G6000 " - pdb=" SG CYS G4892 " pdb="ZN ZN G6000 " - pdb=" SG CYS G4889 " pdb="ZN ZN G6000 " - pdb=" NE2 HIS G4909 " pdb=" ZN J6000 " pdb="ZN ZN J6000 " - pdb=" SG CYS J4892 " pdb="ZN ZN J6000 " - pdb=" SG CYS J4889 " pdb="ZN ZN J6000 " - pdb=" NE2 HIS J4909 " 29136 Ramachandran restraints generated. 14568 Oldfield, 0 Emsley, 14568 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 28216 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 592 helices and 92 sheets defined 57.9% alpha, 8.8% beta 0 base pairs and 0 stacking pairs defined. Time for finding SS restraints: 29.86 Creating SS restraints... Processing helix chain 'A' and resid 61 through 66 removed outlier: 4.103A pdb=" N CYS A 65 " --> pdb=" O ASP A 61 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N THR A 66 " --> pdb=" O LEU A 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 61 through 66' Processing helix chain 'A' and resid 74 through 84 removed outlier: 3.555A pdb=" N ALA A 83 " --> pdb=" O GLN A 79 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N ASN A 84 " --> pdb=" O GLU A 80 " (cutoff:3.500A) Processing helix chain 'A' and resid 266 through 271 removed outlier: 4.333A pdb=" N ALA A 271 " --> pdb=" O VAL A 267 " (cutoff:3.500A) Processing helix chain 'A' and resid 318 through 323 removed outlier: 4.320A pdb=" N ALA A 322 " --> pdb=" O ASP A 318 " (cutoff:3.500A) removed outlier: 6.077A pdb=" N ASP A 323 " --> pdb=" O LYS A 319 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 318 through 323' Processing helix chain 'A' and resid 409 through 439 removed outlier: 3.583A pdb=" N ALA A 416 " --> pdb=" O GLU A 412 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N ARG A 417 " --> pdb=" O SER A 413 " (cutoff:3.500A) removed outlier: 4.493A pdb=" N ARG A 428 " --> pdb=" O PHE A 424 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ALA A 435 " --> pdb=" O ARG A 431 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N LEU A 436 " --> pdb=" O GLY A 432 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N LYS A 438 " --> pdb=" O ASP A 434 " (cutoff:3.500A) removed outlier: 4.774A pdb=" N LYS A 439 " --> pdb=" O ALA A 435 " (cutoff:3.500A) Processing helix chain 'A' and resid 449 through 464 removed outlier: 4.281A pdb=" N GLY A 461 " --> pdb=" O GLN A 457 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N TYR A 462 " --> pdb=" O ASP A 458 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N PHE A 463 " --> pdb=" O LEU A 459 " (cutoff:3.500A) Processing helix chain 'A' and resid 471 through 493 removed outlier: 3.636A pdb=" N GLN A 476 " --> pdb=" O HIS A 472 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ASN A 487 " --> pdb=" O LYS A 483 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N PHE A 489 " --> pdb=" O ARG A 485 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N GLU A 492 " --> pdb=" O LEU A 488 " (cutoff:3.500A) Processing helix chain 'A' and resid 494 through 507 removed outlier: 3.794A pdb=" N CYS A 501 " --> pdb=" O LEU A 497 " (cutoff:3.500A) removed outlier: 4.481A pdb=" N VAL A 507 " --> pdb=" O ASP A 503 " (cutoff:3.500A) Processing helix chain 'A' and resid 519 through 542 removed outlier: 4.013A pdb=" N GLU A 524 " --> pdb=" O ARG A 520 " (cutoff:3.500A) removed outlier: 5.313A pdb=" N SER A 525 " --> pdb=" O GLU A 521 " (cutoff:3.500A) removed outlier: 6.260A pdb=" N TRP A 526 " --> pdb=" O ALA A 522 " (cutoff:3.500A) removed outlier: 6.090A pdb=" N LYS A 527 " --> pdb=" O GLY A 523 " (cutoff:3.500A) removed outlier: 6.087A pdb=" N SER A 528 " --> pdb=" O GLU A 524 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLU A 535 " --> pdb=" O ASN A 531 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ALA A 539 " --> pdb=" O GLU A 535 " (cutoff:3.500A) removed outlier: 4.066A pdb=" N ILE A 541 " --> pdb=" O LEU A 537 " (cutoff:3.500A) Processing helix chain 'A' and resid 544 through 552 removed outlier: 3.730A pdb=" N GLN A 550 " --> pdb=" O LYS A 546 " (cutoff:3.500A) Processing helix chain 'A' and resid 554 through 563 removed outlier: 3.737A pdb=" N SER A 560 " --> pdb=" O ASP A 556 " (cutoff:3.500A) removed outlier: 4.711A pdb=" N GLU A 563 " --> pdb=" O ILE A 559 " (cutoff:3.500A) Processing helix chain 'A' and resid 567 through 582 removed outlier: 3.638A pdb=" N LEU A 575 " --> pdb=" O ILE A 571 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N SER A 582 " --> pdb=" O VAL A 578 " (cutoff:3.500A) Processing helix chain 'A' and resid 583 through 590 removed outlier: 4.162A pdb=" N ASN A 587 " --> pdb=" O PRO A 583 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N ILE A 588 " --> pdb=" O GLU A 584 " (cutoff:3.500A) removed outlier: 5.850A pdb=" N LYS A 590 " --> pdb=" O LEU A 586 " (cutoff:3.500A) Processing helix chain 'A' and resid 591 through 605 removed outlier: 3.809A pdb=" N GLY A 605 " --> pdb=" O LEU A 601 " (cutoff:3.500A) Processing helix chain 'A' and resid 607 through 620 removed outlier: 3.675A pdb=" N VAL A 619 " --> pdb=" O CYS A 615 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N CYS A 620 " --> pdb=" O SER A 616 " (cutoff:3.500A) Processing helix chain 'A' and resid 625 through 640 removed outlier: 3.812A pdb=" N GLN A 629 " --> pdb=" O VAL A 625 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N LEU A 631 " --> pdb=" O SER A 627 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N ASN A 635 " --> pdb=" O LEU A 631 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N LEU A 637 " --> pdb=" O CYS A 633 " (cutoff:3.500A) Proline residue: A 638 - end of helix Processing helix chain 'A' and resid 821 through 827 removed outlier: 3.832A pdb=" N ALA A 825 " --> pdb=" O PRO A 821 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N VAL A 826 " --> pdb=" O CYS A 822 " (cutoff:3.500A) removed outlier: 4.926A pdb=" N LEU A 827 " --> pdb=" O TYR A 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 821 through 827' Processing helix chain 'A' and resid 875 through 901 removed outlier: 4.060A pdb=" N GLU A 879 " --> pdb=" O PRO A 875 " (cutoff:3.500A) removed outlier: 5.532A pdb=" N ARG A 880 " --> pdb=" O PRO A 876 " (cutoff:3.500A) removed outlier: 4.629A pdb=" N ILE A 881 " --> pdb=" O HIS A 877 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N LEU A 892 " --> pdb=" O ASN A 888 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N LYS A 897 " --> pdb=" O TRP A 893 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N LEU A 900 " --> pdb=" O ASN A 896 " (cutoff:3.500A) removed outlier: 4.991A pdb=" N GLY A 901 " --> pdb=" O LYS A 897 " (cutoff:3.500A) Processing helix chain 'A' and resid 925 through 930 removed outlier: 4.633A pdb=" N ASN A 930 " --> pdb=" O GLU A 926 " (cutoff:3.500A) Processing helix chain 'A' and resid 931 through 946 removed outlier: 3.662A pdb=" N LEU A 937 " --> pdb=" O LEU A 933 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N GLU A 938 " --> pdb=" O GLN A 934 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N LEU A 943 " --> pdb=" O THR A 939 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N ALA A 945 " --> pdb=" O LYS A 941 " (cutoff:3.500A) Processing helix chain 'A' and resid 982 through 987 removed outlier: 3.953A pdb=" N ILE A 986 " --> pdb=" O ASP A 982 " (cutoff:3.500A) removed outlier: 5.257A pdb=" N LYS A 987 " --> pdb=" O LEU A 983 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 982 through 987' Processing helix chain 'A' and resid 989 through 1012 removed outlier: 3.727A pdb=" N MET A 995 " --> pdb=" O SER A 991 " (cutoff:3.500A) Processing helix chain 'A' and resid 1042 through 1061 removed outlier: 4.027A pdb=" N ASN A1046 " --> pdb=" O THR A1042 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N SER A1049 " --> pdb=" O SER A1045 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N LEU A1057 " --> pdb=" O ALA A1053 " (cutoff:3.500A) Processing helix chain 'A' and resid 1226 through 1231 removed outlier: 4.118A pdb=" N GLY A1231 " --> pdb=" O PHE A1227 " (cutoff:3.500A) Processing helix chain 'A' and resid 1571 through 1577 removed outlier: 4.525A pdb=" N HIS A1575 " --> pdb=" O PHE A1571 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N LYS A1576 " --> pdb=" O LYS A1572 " (cutoff:3.500A) removed outlier: 5.253A pdb=" N ASN A1577 " --> pdb=" O SER A1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1571 through 1577' Processing helix chain 'A' and resid 1643 through 1648 removed outlier: 4.364A pdb=" N GLN A1647 " --> pdb=" O GLU A1643 " (cutoff:3.500A) removed outlier: 4.400A pdb=" N GLU A1648 " --> pdb=" O LEU A1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1643 through 1648' Processing helix chain 'A' and resid 1649 through 1666 removed outlier: 4.179A pdb=" N PHE A1653 " --> pdb=" O GLU A1649 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N CYS A1665 " --> pdb=" O TYR A1661 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N ALA A1666 " --> pdb=" O SER A1662 " (cutoff:3.500A) Processing helix chain 'A' and resid 1669 through 1681 removed outlier: 3.582A pdb=" N SER A1678 " --> pdb=" O HIS A1674 " (cutoff:3.500A) removed outlier: 3.727A pdb=" N HIS A1679 " --> pdb=" O ALA A1675 " (cutoff:3.500A) Processing helix chain 'A' and resid 1682 through 1691 removed outlier: 3.565A pdb=" N TYR A1687 " --> pdb=" O PRO A1683 " (cutoff:3.500A) removed outlier: 4.583A pdb=" N GLU A1690 " --> pdb=" O LEU A1686 " (cutoff:3.500A) Processing helix chain 'A' and resid 1695 through 1710 removed outlier: 3.551A pdb=" N TYR A1702 " --> pdb=" O LEU A1698 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N ILE A1707 " --> pdb=" O TYR A1703 " (cutoff:3.500A) Processing helix chain 'A' and resid 1711 through 1722 removed outlier: 4.606A pdb=" N ALA A1715 " --> pdb=" O LEU A1711 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N ALA A1717 " --> pdb=" O SER A1713 " (cutoff:3.500A) removed outlier: 3.997A pdb=" N MET A1721 " --> pdb=" O ALA A1717 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N ASN A1722 " --> pdb=" O ARG A1718 " (cutoff:3.500A) Processing helix chain 'A' and resid 1730 through 1736 removed outlier: 3.797A pdb=" N LYS A1734 " --> pdb=" O THR A1730 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N SER A1735 " --> pdb=" O GLU A1731 " (cutoff:3.500A) removed outlier: 4.916A pdb=" N ILE A1736 " --> pdb=" O GLU A1732 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1730 through 1736' Processing helix chain 'A' and resid 1771 through 1776 removed outlier: 4.558A pdb=" N CYS A1775 " --> pdb=" O ILE A1771 " (cutoff:3.500A) removed outlier: 5.455A pdb=" N TYR A1776 " --> pdb=" O ASN A1772 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1771 through 1776' Processing helix chain 'A' and resid 1783 through 1805 removed outlier: 4.095A pdb=" N LEU A1787 " --> pdb=" O PRO A1783 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N ILE A1792 " --> pdb=" O LYS A1788 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N GLU A1801 " --> pdb=" O GLU A1797 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N LEU A1804 " --> pdb=" O GLN A1800 " (cutoff:3.500A) Processing helix chain 'A' and resid 1813 through 1832 removed outlier: 3.503A pdb=" N LEU A1817 " --> pdb=" O THR A1813 " (cutoff:3.500A) Proline residue: A1820 - end of helix removed outlier: 3.557A pdb=" N MET A1831 " --> pdb=" O THR A1827 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N GLY A1832 " --> pdb=" O LEU A1828 " (cutoff:3.500A) Processing helix chain 'A' and resid 1835 through 1847 removed outlier: 3.765A pdb=" N LYS A1840 " --> pdb=" O ASN A1836 " (cutoff:3.500A) Processing helix chain 'A' and resid 1901 through 1938 removed outlier: 4.224A pdb=" N GLN A1906 " --> pdb=" O PRO A1902 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N TYR A1913 " --> pdb=" O LEU A1909 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N LEU A1914 " --> pdb=" O LEU A1910 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N CYS A1915 " --> pdb=" O LEU A1911 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ALA A1928 " --> pdb=" O GLU A1924 " (cutoff:3.500A) removed outlier: 3.737A pdb=" N SER A1930 " --> pdb=" O ILE A1926 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N ASP A1932 " --> pdb=" O ALA A1928 " (cutoff:3.500A) Processing helix chain 'A' and resid 1940 through 1953 removed outlier: 3.505A pdb=" N GLN A1950 " --> pdb=" O ASN A1946 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N ASN A1953 " --> pdb=" O MET A1949 " (cutoff:3.500A) Processing helix chain 'A' and resid 1990 through 1998 removed outlier: 5.322A pdb=" N ARG A1994 " --> pdb=" O PRO A1990 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N GLN A1996 " --> pdb=" O GLU A1992 " (cutoff:3.500A) removed outlier: 4.709A pdb=" N LEU A1998 " --> pdb=" O ARG A1994 " (cutoff:3.500A) Processing helix chain 'A' and resid 1999 through 2008 Processing helix chain 'A' and resid 2026 through 2039 removed outlier: 3.884A pdb=" N LEU A2030 " --> pdb=" O ILE A2026 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N LEU A2031 " --> pdb=" O ARG A2027 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N VAL A2034 " --> pdb=" O LEU A2030 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N GLU A2035 " --> pdb=" O LEU A2031 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N LYS A2036 " --> pdb=" O SER A2032 " (cutoff:3.500A) removed outlier: 4.686A pdb=" N TYR A2039 " --> pdb=" O GLU A2035 " (cutoff:3.500A) Processing helix chain 'A' and resid 2058 through 2074 removed outlier: 4.207A pdb=" N LEU A2062 " --> pdb=" O THR A2058 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N VAL A2068 " --> pdb=" O SER A2064 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N GLU A2073 " --> pdb=" O ARG A2069 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N SER A2074 " --> pdb=" O TRP A2070 " (cutoff:3.500A) Processing helix chain 'A' and resid 2078 through 2095 removed outlier: 3.701A pdb=" N ALA A2084 " --> pdb=" O GLU A2080 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N VAL A2087 " --> pdb=" O ARG A2083 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N LEU A2088 " --> pdb=" O ALA A2084 " (cutoff:3.500A) Processing helix chain 'A' and resid 2096 through 2106 Proline residue: A2104 - end of helix Processing helix chain 'A' and resid 2110 through 2132 removed outlier: 3.979A pdb=" N VAL A2114 " --> pdb=" O ASN A2110 " (cutoff:3.500A) removed outlier: 5.156A pdb=" N GLU A2115 " --> pdb=" O GLY A2111 " (cutoff:3.500A) removed outlier: 5.064A pdb=" N ASP A2116 " --> pdb=" O VAL A2112 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N ILE A2118 " --> pdb=" O VAL A2114 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N ASN A2119 " --> pdb=" O GLU A2115 " (cutoff:3.500A) removed outlier: 4.741A pdb=" N SER A2132 " --> pdb=" O ARG A2128 " (cutoff:3.500A) Processing helix chain 'A' and resid 2138 through 2153 removed outlier: 3.592A pdb=" N LEU A2142 " --> pdb=" O GLU A2138 " (cutoff:3.500A) removed outlier: 3.927A pdb=" N MET A2143 " --> pdb=" O GLU A2139 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ASP A2149 " --> pdb=" O ARG A2145 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N ILE A2150 " --> pdb=" O GLY A2146 " (cutoff:3.500A) removed outlier: 4.447A pdb=" N ASN A2153 " --> pdb=" O ASP A2149 " (cutoff:3.500A) Processing helix chain 'A' and resid 2154 through 2160 removed outlier: 3.718A pdb=" N GLN A2158 " --> pdb=" O LYS A2154 " (cutoff:3.500A) removed outlier: 6.103A pdb=" N HIS A2159 " --> pdb=" O VAL A2155 " (cutoff:3.500A) Proline residue: A2160 - end of helix No H-bonds generated for 'chain 'A' and resid 2154 through 2160' Processing helix chain 'A' and resid 2161 through 2167 removed outlier: 3.648A pdb=" N GLY A2167 " --> pdb=" O MET A2163 " (cutoff:3.500A) Processing helix chain 'A' and resid 2168 through 2181 removed outlier: 3.791A pdb=" N VAL A2172 " --> pdb=" O MET A2168 " (cutoff:3.500A) removed outlier: 5.379A pdb=" N GLY A2181 " --> pdb=" O VAL A2177 " (cutoff:3.500A) Processing helix chain 'A' and resid 2191 through 2209 removed outlier: 3.938A pdb=" N CYS A2197 " --> pdb=" O MET A2193 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N PHE A2200 " --> pdb=" O ASN A2196 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ARG A2206 " --> pdb=" O CYS A2202 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N ILE A2207 " --> pdb=" O TYR A2203 " (cutoff:3.500A) removed outlier: 5.039A pdb=" N SER A2208 " --> pdb=" O PHE A2204 " (cutoff:3.500A) removed outlier: 5.322A pdb=" N ARG A2209 " --> pdb=" O CYS A2205 " (cutoff:3.500A) Processing helix chain 'A' and resid 2210 through 2217 removed outlier: 3.895A pdb=" N ALA A2214 " --> pdb=" O GLN A2210 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N ASP A2217 " --> pdb=" O LYS A2213 " (cutoff:3.500A) Processing helix chain 'A' and resid 2218 through 2225 removed outlier: 4.410A pdb=" N GLU A2224 " --> pdb=" O SER A2220 " (cutoff:3.500A) removed outlier: 4.774A pdb=" N ASN A2225 " --> pdb=" O TYR A2221 " (cutoff:3.500A) Processing helix chain 'A' and resid 2232 through 2239 removed outlier: 4.610A pdb=" N ARG A2236 " --> pdb=" O SER A2232 " (cutoff:3.500A) removed outlier: 8.634A pdb=" N GLY A2237 " --> pdb=" O PRO A2233 " (cutoff:3.500A) removed outlier: 5.162A pdb=" N SER A2238 " --> pdb=" O ALA A2234 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N THR A2239 " --> pdb=" O MET A2235 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 2232 through 2239' Processing helix chain 'A' and resid 2240 through 2249 removed outlier: 3.772A pdb=" N VAL A2248 " --> pdb=" O ALA A2244 " (cutoff:3.500A) Processing helix chain 'A' and resid 2251 through 2258 removed outlier: 3.758A pdb=" N LEU A2258 " --> pdb=" O LEU A2254 " (cutoff:3.500A) Processing helix chain 'A' and resid 2259 through 2274 removed outlier: 3.806A pdb=" N LEU A2263 " --> pdb=" O ARG A2259 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N VAL A2266 " --> pdb=" O ASP A2262 " (cutoff:3.500A) removed outlier: 5.325A pdb=" N GLY A2274 " --> pdb=" O LEU A2270 " (cutoff:3.500A) Processing helix chain 'A' and resid 2293 through 2308 removed outlier: 5.256A pdb=" N GLU A2297 " --> pdb=" O PRO A2293 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N ARG A2298 " --> pdb=" O VAL A2294 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N TYR A2299 " --> pdb=" O GLU A2295 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N LEU A2300 " --> pdb=" O GLY A2296 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N ARG A2304 " --> pdb=" O LEU A2300 " (cutoff:3.500A) removed outlier: 4.061A pdb=" N PHE A2305 " --> pdb=" O ASP A2301 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N ALA A2306 " --> pdb=" O PHE A2302 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N PHE A2308 " --> pdb=" O ARG A2304 " (cutoff:3.500A) Processing helix chain 'A' and resid 2314 through 2329 removed outlier: 4.537A pdb=" N ALA A2318 " --> pdb=" O VAL A2314 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N ASN A2319 " --> pdb=" O GLU A2315 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N VAL A2322 " --> pdb=" O ALA A2318 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N ARG A2327 " --> pdb=" O ARG A2323 " (cutoff:3.500A) removed outlier: 4.557A pdb=" N ARG A2328 " --> pdb=" O LEU A2324 " (cutoff:3.500A) Proline residue: A2329 - end of helix Processing helix chain 'A' and resid 2343 through 2355 removed outlier: 3.584A pdb=" N GLU A2349 " --> pdb=" O LEU A2345 " (cutoff:3.500A) removed outlier: 4.353A pdb=" N GLU A2350 " --> pdb=" O ALA A2346 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N ALA A2351 " --> pdb=" O ALA A2347 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N ILE A2352 " --> pdb=" O MET A2348 " (cutoff:3.500A) removed outlier: 4.465A pdb=" N LYS A2353 " --> pdb=" O GLU A2349 " (cutoff:3.500A) removed outlier: 4.322A pdb=" N ILE A2354 " --> pdb=" O GLU A2350 " (cutoff:3.500A) removed outlier: 5.843A pdb=" N ALA A2355 " --> pdb=" O ALA A2351 " (cutoff:3.500A) Processing helix chain 'A' and resid 2386 through 2404 removed outlier: 3.645A pdb=" N MET A2390 " --> pdb=" O GLY A2386 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N ALA A2394 " --> pdb=" O MET A2390 " (cutoff:3.500A) removed outlier: 3.634A pdb=" N ILE A2397 " --> pdb=" O TYR A2393 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N ARG A2402 " --> pdb=" O ASP A2398 " (cutoff:3.500A) removed outlier: 4.271A pdb=" N ALA A2404 " --> pdb=" O LEU A2400 " (cutoff:3.500A) Processing helix chain 'A' and resid 2408 through 2413 removed outlier: 4.117A pdb=" N ALA A2412 " --> pdb=" O HIS A2408 " (cutoff:3.500A) Processing helix chain 'A' and resid 2414 through 2429 removed outlier: 4.798A pdb=" N ILE A2418 " --> pdb=" O LYS A2414 " (cutoff:3.500A) removed outlier: 6.351A pdb=" N ARG A2419 " --> pdb=" O GLY A2415 " (cutoff:3.500A) removed outlier: 4.796A pdb=" N ILE A2420 " --> pdb=" O GLU A2416 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N ARG A2421 " --> pdb=" O ALA A2417 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N ILE A2423 " --> pdb=" O ARG A2419 " (cutoff:3.500A) removed outlier: 3.977A pdb=" N ILE A2428 " --> pdb=" O LEU A2424 " (cutoff:3.500A) Proline residue: A2429 - end of helix Processing helix chain 'A' and resid 2432 through 2437 Processing helix chain 'A' and resid 2462 through 2477 removed outlier: 3.692A pdb=" N LYS A2466 " --> pdb=" O CYS A2462 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ALA A2467 " --> pdb=" O PRO A2463 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N ALA A2468 " --> pdb=" O ASP A2464 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N PHE A2472 " --> pdb=" O ALA A2468 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ARG A2475 " --> pdb=" O LEU A2471 " (cutoff:3.500A) Processing helix chain 'A' and resid 2481 through 2489 removed outlier: 4.133A pdb=" N LEU A2485 " --> pdb=" O VAL A2481 " (cutoff:3.500A) removed outlier: 4.012A pdb=" N LEU A2486 " --> pdb=" O GLN A2482 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N LEU A2489 " --> pdb=" O LEU A2485 " (cutoff:3.500A) Processing helix chain 'A' and resid 2494 through 2500 removed outlier: 4.527A pdb=" N ARG A2498 " --> pdb=" O LEU A2494 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ALA A2499 " --> pdb=" O PRO A2495 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N ALA A2500 " --> pdb=" O ASP A2496 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 2494 through 2500' Processing helix chain 'A' and resid 2514 through 2528 removed outlier: 4.347A pdb=" N ASN A2518 " --> pdb=" O ALA A2514 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N ARG A2519 " --> pdb=" O LEU A2515 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N LEU A2521 " --> pdb=" O LEU A2517 " (cutoff:3.500A) removed outlier: 4.806A pdb=" N CYS A2522 " --> pdb=" O ASN A2518 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N THR A2523 " --> pdb=" O ARG A2519 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N VAL A2525 " --> pdb=" O LEU A2521 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N LEU A2526 " --> pdb=" O CYS A2522 " (cutoff:3.500A) Proline residue: A2527 - end of helix Processing helix chain 'A' and resid 2536 through 2553 removed outlier: 4.792A pdb=" N GLU A2540 " --> pdb=" O PHE A2536 " (cutoff:3.500A) Processing helix chain 'A' and resid 2558 through 2576 removed outlier: 3.880A pdb=" N GLU A2571 " --> pdb=" O ARG A2567 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N VAL A2572 " --> pdb=" O ASP A2568 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N CYS A2573 " --> pdb=" O SER A2569 " (cutoff:3.500A) removed outlier: 3.981A pdb=" N LEU A2574 " --> pdb=" O ILE A2570 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N SER A2576 " --> pdb=" O VAL A2572 " (cutoff:3.500A) Processing helix chain 'A' and resid 2582 through 2601 removed outlier: 4.073A pdb=" N MET A2586 " --> pdb=" O ARG A2582 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ARG A2592 " --> pdb=" O HIS A2588 " (cutoff:3.500A) Proline residue: A2598 - end of helix Processing helix chain 'A' and resid 2605 through 2625 removed outlier: 3.773A pdb=" N LEU A2611 " --> pdb=" O PRO A2607 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ASN A2613 " --> pdb=" O LYS A2609 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N HIS A2614 " --> pdb=" O LEU A2610 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N TYR A2615 " --> pdb=" O LEU A2611 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ARG A2617 " --> pdb=" O ASN A2613 " (cutoff:3.500A) Proline residue: A2625 - end of helix Processing helix chain 'A' and resid 2635 through 2653 removed outlier: 4.144A pdb=" N ALA A2652 " --> pdb=" O GLY A2648 " (cutoff:3.500A) removed outlier: 4.775A pdb=" N LEU A2653 " --> pdb=" O ILE A2649 " (cutoff:3.500A) Processing helix chain 'A' and resid 2659 through 2677 removed outlier: 3.803A pdb=" N PHE A2663 " --> pdb=" O GLU A2659 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N LEU A2665 " --> pdb=" O GLU A2661 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ALA A2666 " --> pdb=" O LEU A2662 " (cutoff:3.500A) Proline residue: A2668 - end of helix Processing helix chain 'A' and resid 2719 through 2739 removed outlier: 4.708A pdb=" N ASN A2723 " --> pdb=" O GLU A2719 " (cutoff:3.500A) removed outlier: 5.044A pdb=" N LYS A2724 " --> pdb=" O TYR A2720 " (cutoff:3.500A) removed outlier: 3.623A pdb=" N ASP A2736 " --> pdb=" O LYS A2732 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N LYS A2737 " --> pdb=" O TRP A2733 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N ALA A2739 " --> pdb=" O MET A2735 " (cutoff:3.500A) Processing helix chain 'A' and resid 2765 through 2774 removed outlier: 4.110A pdb=" N LYS A2769 " --> pdb=" O SER A2765 " (cutoff:3.500A) removed outlier: 5.385A pdb=" N GLU A2770 " --> pdb=" O GLU A2766 " (cutoff:3.500A) removed outlier: 6.653A pdb=" N ILE A2771 " --> pdb=" O LYS A2767 " (cutoff:3.500A) removed outlier: 6.093A pdb=" N TYR A2772 " --> pdb=" O GLU A2768 " (cutoff:3.500A) removed outlier: 4.304A pdb=" N TRP A2774 " --> pdb=" O GLU A2770 " (cutoff:3.500A) Processing helix chain 'A' and resid 2775 through 2787 removed outlier: 3.900A pdb=" N SER A2779 " --> pdb=" O PRO A2775 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N LYS A2781 " --> pdb=" O LYS A2777 " (cutoff:3.500A) removed outlier: 5.034A pdb=" N THR A2782 " --> pdb=" O GLU A2778 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N TRP A2786 " --> pdb=" O THR A2782 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N GLY A2787 " --> pdb=" O MET A2783 " (cutoff:3.500A) Processing helix chain 'A' and resid 2835 through 2863 removed outlier: 3.718A pdb=" N MET A2841 " --> pdb=" O ASP A2837 " (cutoff:3.500A) removed outlier: 3.911A pdb=" N MET A2844 " --> pdb=" O ALA A2840 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ASN A2848 " --> pdb=" O MET A2844 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N HIS A2850 " --> pdb=" O ALA A2846 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N ASN A2851 " --> pdb=" O GLU A2847 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N TRP A2853 " --> pdb=" O TYR A2849 " (cutoff:3.500A) removed outlier: 5.123A pdb=" N SER A2863 " --> pdb=" O LEU A2859 " (cutoff:3.500A) Processing helix chain 'A' and resid 2881 through 2894 removed outlier: 3.513A pdb=" N ASP A2886 " --> pdb=" O GLU A2882 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N GLU A2888 " --> pdb=" O ALA A2884 " (cutoff:3.500A) removed outlier: 4.497A pdb=" N LYS A2889 " --> pdb=" O LYS A2885 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N ALA A2890 " --> pdb=" O ASP A2886 " (cutoff:3.500A) removed outlier: 4.436A pdb=" N ILE A2893 " --> pdb=" O LYS A2889 " (cutoff:3.500A) removed outlier: 4.722A pdb=" N LEU A2894 " --> pdb=" O ALA A2890 " (cutoff:3.500A) Processing helix chain 'A' and resid 2987 through 3004 removed outlier: 4.664A pdb=" N LEU A2991 " --> pdb=" O ALA A2987 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N LYS A3000 " --> pdb=" O HIS A2996 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N GLU A3003 " --> pdb=" O ASN A2999 " (cutoff:3.500A) removed outlier: 4.375A pdb=" N MET A3004 " --> pdb=" O LYS A3000 " (cutoff:3.500A) Processing helix chain 'A' and resid 3011 through 3028 removed outlier: 4.277A pdb=" N ALA A3027 " --> pdb=" O PHE A3023 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N THR A3028 " --> pdb=" O GLY A3024 " (cutoff:3.500A) Processing helix chain 'A' and resid 3035 through 3052 removed outlier: 3.933A pdb=" N GLU A3052 " --> pdb=" O LYS A3048 " (cutoff:3.500A) Processing helix chain 'A' and resid 3062 through 3082 removed outlier: 4.250A pdb=" N ALA A3066 " --> pdb=" O LEU A3062 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N GLU A3067 " --> pdb=" O ASP A3063 " (cutoff:3.500A) removed outlier: 3.982A pdb=" N ASP A3068 " --> pdb=" O ASN A3064 " (cutoff:3.500A) removed outlier: 5.211A pdb=" N LEU A3069 " --> pdb=" O ALA A3065 " (cutoff:3.500A) removed outlier: 5.584A pdb=" N GLU A3070 " --> pdb=" O ALA A3066 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N MET A3073 " --> pdb=" O LEU A3069 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N GLN A3080 " --> pdb=" O LEU A3076 " (cutoff:3.500A) removed outlier: 4.118A pdb=" N PHE A3081 " --> pdb=" O LYS A3077 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N THR A3082 " --> pdb=" O GLN A3078 " (cutoff:3.500A) Processing helix chain 'A' and resid 3100 through 3117 Proline residue: A3104 - end of helix removed outlier: 3.579A pdb=" N SER A3107 " --> pdb=" O LEU A3103 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N HIS A3112 " --> pdb=" O SER A3108 " (cutoff:3.500A) removed outlier: 5.098A pdb=" N GLN A3117 " --> pdb=" O ILE A3113 " (cutoff:3.500A) Processing helix chain 'A' and resid 3125 through 3142 removed outlier: 3.895A pdb=" N SER A3137 " --> pdb=" O ARG A3133 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ALA A3140 " --> pdb=" O THR A3136 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N GLY A3142 " --> pdb=" O LEU A3138 " (cutoff:3.500A) Processing helix chain 'A' and resid 3152 through 3163 removed outlier: 3.633A pdb=" N LEU A3160 " --> pdb=" O LEU A3156 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N ALA A3161 " --> pdb=" O GLY A3157 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N ALA A3162 " --> pdb=" O GLU A3158 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N PHE A3163 " --> pdb=" O CYS A3159 " (cutoff:3.500A) Processing helix chain 'A' and resid 3172 through 3182 removed outlier: 4.218A pdb=" N HIS A3179 " --> pdb=" O HIS A3175 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N ASN A3180 " --> pdb=" O LEU A3176 " (cutoff:3.500A) Processing helix chain 'A' and resid 3585 through 3607 removed outlier: 3.942A pdb=" N LEU A3592 " --> pdb=" O TRP A3588 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N SER A3593 " --> pdb=" O HIS A3589 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N LYS A3594 " --> pdb=" O LYS A3590 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N VAL A3601 " --> pdb=" O LYS A3597 " (cutoff:3.500A) removed outlier: 3.916A pdb=" N ALA A3607 " --> pdb=" O CYS A3603 " (cutoff:3.500A) Processing helix chain 'A' and resid 3613 through 3629 removed outlier: 3.779A pdb=" N GLN A3623 " --> pdb=" O ASN A3619 " (cutoff:3.500A) Processing helix chain 'A' and resid 3636 through 3647 removed outlier: 4.064A pdb=" N LYS A3640 " --> pdb=" O TYR A3636 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N GLU A3643 " --> pdb=" O ASP A3639 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N LYS A3647 " --> pdb=" O GLU A3643 " (cutoff:3.500A) Processing helix chain 'A' and resid 3663 through 3678 removed outlier: 3.589A pdb=" N LEU A3668 " --> pdb=" O PRO A3664 " (cutoff:3.500A) removed outlier: 4.423A pdb=" N THR A3678 " --> pdb=" O ARG A3674 " (cutoff:3.500A) Processing helix chain 'A' and resid 3686 through 3700 removed outlier: 4.132A pdb=" N ASP A3694 " --> pdb=" O MET A3690 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N ALA A3697 " --> pdb=" O ALA A3693 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N SER A3699 " --> pdb=" O ILE A3695 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N CYS A3700 " --> pdb=" O MET A3696 " (cutoff:3.500A) Processing helix chain 'A' and resid 3714 through 3734 removed outlier: 4.117A pdb=" N LYS A3718 " --> pdb=" O SER A3714 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N LYS A3722 " --> pdb=" O LYS A3718 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N LEU A3732 " --> pdb=" O GLN A3728 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ASP A3734 " --> pdb=" O ALA A3730 " (cutoff:3.500A) Processing helix chain 'A' and resid 3736 through 3749 removed outlier: 3.560A pdb=" N MET A3740 " --> pdb=" O GLY A3736 " (cutoff:3.500A) removed outlier: 4.119A pdb=" N VAL A3741 " --> pdb=" O ALA A3737 " (cutoff:3.500A) removed outlier: 4.133A pdb=" N LEU A3742 " --> pdb=" O ALA A3738 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N ILE A3745 " --> pdb=" O VAL A3741 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N SER A3746 " --> pdb=" O LEU A3742 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N SER A3748 " --> pdb=" O THR A3744 " (cutoff:3.500A) removed outlier: 4.874A pdb=" N LYS A3749 " --> pdb=" O ILE A3745 " (cutoff:3.500A) Processing helix chain 'A' and resid 3753 through 3768 removed outlier: 3.723A pdb=" N LYS A3761 " --> pdb=" O ALA A3757 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N ALA A3765 " --> pdb=" O LYS A3761 " (cutoff:3.500A) Processing helix chain 'A' and resid 3771 through 3786 removed outlier: 3.768A pdb=" N LEU A3779 " --> pdb=" O GLN A3775 " (cutoff:3.500A) removed outlier: 3.820A pdb=" N GLU A3784 " --> pdb=" O GLU A3780 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N LYS A3786 " --> pdb=" O LEU A3782 " (cutoff:3.500A) Processing helix chain 'A' and resid 3787 through 3801 removed outlier: 4.766A pdb=" N PHE A3791 " --> pdb=" O ASP A3787 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N SER A3793 " --> pdb=" O GLY A3789 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N GLY A3796 " --> pdb=" O GLN A3792 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N SER A3800 " --> pdb=" O GLY A3796 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N CYS A3801 " --> pdb=" O LEU A3797 " (cutoff:3.500A) Processing helix chain 'A' and resid 3805 through 3819 removed outlier: 3.910A pdb=" N PHE A3809 " --> pdb=" O ASP A3805 " (cutoff:3.500A) Processing helix chain 'A' and resid 3833 through 3849 removed outlier: 3.642A pdb=" N THR A3837 " --> pdb=" O ASP A3833 " (cutoff:3.500A) removed outlier: 3.912A pdb=" N PHE A3841 " --> pdb=" O THR A3837 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N PHE A3843 " --> pdb=" O ASP A3839 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N LEU A3847 " --> pdb=" O PHE A3843 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N CYS A3848 " --> pdb=" O LEU A3844 " (cutoff:3.500A) Processing helix chain 'A' and resid 3852 through 3861 removed outlier: 3.544A pdb=" N ASN A3857 " --> pdb=" O SER A3853 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N TYR A3858 " --> pdb=" O ASP A3854 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N ARG A3860 " --> pdb=" O GLN A3856 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N THR A3861 " --> pdb=" O ASN A3857 " (cutoff:3.500A) Processing helix chain 'A' and resid 3870 through 3894 removed outlier: 3.543A pdb=" N VAL A3876 " --> pdb=" O ILE A3872 " (cutoff:3.500A) removed outlier: 3.737A pdb=" N TYR A3878 " --> pdb=" O SER A3874 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N LEU A3879 " --> pdb=" O THR A3875 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N ARG A3881 " --> pdb=" O ASP A3877 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N SER A3885 " --> pdb=" O ARG A3881 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N TYR A3893 " --> pdb=" O PHE A3889 " (cutoff:3.500A) Processing helix chain 'A' and resid 3900 through 3926 removed outlier: 3.525A pdb=" N PHE A3907 " --> pdb=" O GLY A3903 " (cutoff:3.500A) removed outlier: 4.020A pdb=" N LYS A3909 " --> pdb=" O ARG A3905 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N ALA A3910 " --> pdb=" O ASN A3906 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N GLN A3912 " --> pdb=" O SER A3908 " (cutoff:3.500A) removed outlier: 4.504A pdb=" N VAL A3913 " --> pdb=" O LYS A3909 " (cutoff:3.500A) removed outlier: 3.660A pdb=" N PHE A3918 " --> pdb=" O ALA A3914 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N GLU A3923 " --> pdb=" O ASN A3919 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N TYR A3924 " --> pdb=" O THR A3920 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N ILE A3925 " --> pdb=" O LEU A3921 " (cutoff:3.500A) Processing helix chain 'A' and resid 3929 through 3940 removed outlier: 3.562A pdb=" N SER A3935 " --> pdb=" O GLY A3931 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N SER A3939 " --> pdb=" O SER A3935 " (cutoff:3.500A) removed outlier: 4.898A pdb=" N ARG A3940 " --> pdb=" O LEU A3936 " (cutoff:3.500A) Processing helix chain 'A' and resid 3941 through 3959 removed outlier: 3.604A pdb=" N VAL A3945 " --> pdb=" O LEU A3941 " (cutoff:3.500A) removed outlier: 4.213A pdb=" N HIS A3954 " --> pdb=" O HIS A3950 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LYS A3958 " --> pdb=" O HIS A3954 " (cutoff:3.500A) Processing helix chain 'A' and resid 3965 through 3989 removed outlier: 3.679A pdb=" N LEU A3969 " --> pdb=" O GLN A3965 " (cutoff:3.500A) removed outlier: 4.182A pdb=" N GLU A3971 " --> pdb=" O GLU A3967 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N GLN A3976 " --> pdb=" O LEU A3972 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N MET A3982 " --> pdb=" O ASP A3978 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N LEU A3987 " --> pdb=" O LEU A3983 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N GLU A3988 " --> pdb=" O LEU A3984 " (cutoff:3.500A) removed outlier: 5.557A pdb=" N GLY A3989 " --> pdb=" O SER A3985 " (cutoff:3.500A) Processing helix chain 'A' and resid 3994 through 4008 removed outlier: 3.654A pdb=" N VAL A4001 " --> pdb=" O GLY A3997 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N LEU A4004 " --> pdb=" O MET A4000 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N SER A4008 " --> pdb=" O LEU A4004 " (cutoff:3.500A) Processing helix chain 'A' and resid 4009 through 4028 removed outlier: 4.691A pdb=" N MET A4013 " --> pdb=" O ASN A4009 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N ILE A4014 " --> pdb=" O ASN A4010 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N PHE A4021 " --> pdb=" O PHE A4017 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N LEU A4024 " --> pdb=" O MET A4020 " (cutoff:3.500A) removed outlier: 4.055A pdb=" N LYS A4025 " --> pdb=" O PHE A4021 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N THR A4028 " --> pdb=" O LEU A4024 " (cutoff:3.500A) Processing helix chain 'A' and resid 4030 through 4035 Processing helix chain 'A' and resid 4046 through 4057 removed outlier: 3.529A pdb=" N MET A4053 " --> pdb=" O PHE A4049 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N GLU A4054 " --> pdb=" O HIS A4050 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N LYS A4057 " --> pdb=" O MET A4053 " (cutoff:3.500A) Processing helix chain 'A' and resid 4060 through 4069 Processing helix chain 'A' and resid 4081 through 4110 Proline residue: A4091 - end of helix removed outlier: 4.108A pdb=" N ASP A4094 " --> pdb=" O GLU A4090 " (cutoff:3.500A) removed outlier: 4.718A pdb=" N ILE A4095 " --> pdb=" O PRO A4091 " (cutoff:3.500A) removed outlier: 5.229A pdb=" N GLY A4096 " --> pdb=" O ALA A4092 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ASN A4098 " --> pdb=" O ASP A4094 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N VAL A4099 " --> pdb=" O ILE A4095 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N SER A4107 " --> pdb=" O LEU A4103 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N HIS A4109 " --> pdb=" O ASN A4105 " (cutoff:3.500A) Processing helix chain 'A' and resid 4113 through 4124 removed outlier: 4.128A pdb=" N GLN A4117 " --> pdb=" O ASP A4113 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N PHE A4119 " --> pdb=" O ARG A4115 " (cutoff:3.500A) Processing helix chain 'A' and resid 4125 through 4135 removed outlier: 3.617A pdb=" N TYR A4129 " --> pdb=" O SER A4125 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N GLN A4131 " --> pdb=" O LEU A4127 " (cutoff:3.500A) Proline residue: A4132 - end of helix removed outlier: 6.035A pdb=" N GLY A4135 " --> pdb=" O GLN A4131 " (cutoff:3.500A) Processing helix chain 'A' and resid 4154 through 4164 removed outlier: 3.974A pdb=" N ARG A4158 " --> pdb=" O SER A4154 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N TRP A4161 " --> pdb=" O SER A4157 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N GLU A4162 " --> pdb=" O ARG A4158 " (cutoff:3.500A) Proline residue: A4164 - end of helix Processing helix chain 'A' and resid 4165 through 4180 removed outlier: 4.362A pdb=" N SER A4169 " --> pdb=" O GLN A4165 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N ARG A4171 " --> pdb=" O LYS A4167 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N ASP A4176 " --> pdb=" O GLN A4172 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N VAL A4177 " --> pdb=" O PHE A4173 " (cutoff:3.500A) removed outlier: 3.522A pdb=" N VAL A4178 " --> pdb=" O ILE A4174 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N ASN A4179 " --> pdb=" O PHE A4175 " (cutoff:3.500A) removed outlier: 5.473A pdb=" N GLU A4180 " --> pdb=" O ASP A4176 " (cutoff:3.500A) Processing helix chain 'A' and resid 4182 through 4207 removed outlier: 4.197A pdb=" N MET A4187 " --> pdb=" O GLU A4183 " (cutoff:3.500A) removed outlier: 5.279A pdb=" N GLU A4188 " --> pdb=" O LYS A4184 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ASP A4196 " --> pdb=" O ASN A4192 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ILE A4198 " --> pdb=" O CYS A4194 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N PHE A4199 " --> pdb=" O GLU A4195 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N GLN A4206 " --> pdb=" O GLN A4202 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N ILE A4207 " --> pdb=" O LEU A4203 " (cutoff:3.500A) Processing helix chain 'A' and resid 4486 through 4500 removed outlier: 3.602A pdb=" N PHE A4500 " --> pdb=" O PHE A4496 " (cutoff:3.500A) Processing helix chain 'A' and resid 4501 through 4520 removed outlier: 3.761A pdb=" N MET A4505 " --> pdb=" O TYR A4501 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N LEU A4506 " --> pdb=" O ASN A4502 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N PHE A4509 " --> pdb=" O MET A4505 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N ALA A4511 " --> pdb=" O ALA A4507 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N ASN A4515 " --> pdb=" O ALA A4511 " (cutoff:3.500A) removed outlier: 4.462A pdb=" N LEU A4519 " --> pdb=" O ASN A4515 " (cutoff:3.500A) removed outlier: 5.288A pdb=" N PHE A4520 " --> pdb=" O PHE A4516 " (cutoff:3.500A) Processing helix chain 'A' and resid 4568 through 4614 removed outlier: 5.160A pdb=" N THR A4572 " --> pdb=" O TYR A4568 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N THR A4581 " --> pdb=" O ALA A4577 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N ILE A4583 " --> pdb=" O LEU A4579 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N ILE A4588 " --> pdb=" O SER A4584 " (cutoff:3.500A) removed outlier: 4.406A pdb=" N VAL A4596 " --> pdb=" O TYR A4592 " (cutoff:3.500A) Proline residue: A4597 - end of helix removed outlier: 3.576A pdb=" N ARG A4603 " --> pdb=" O VAL A4599 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N GLU A4606 " --> pdb=" O LYS A4602 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N LYS A4610 " --> pdb=" O GLU A4606 " (cutoff:3.500A) Processing helix chain 'A' and resid 4626 through 4639 removed outlier: 3.954A pdb=" N ASP A4632 " --> pdb=" O LYS A4628 " (cutoff:3.500A) removed outlier: 5.612A pdb=" N ARG A4633 " --> pdb=" O GLY A4629 " (cutoff:3.500A) removed outlier: 5.977A pdb=" N LEU A4634 " --> pdb=" O GLN A4630 " (cutoff:3.500A) removed outlier: 5.503A pdb=" N VAL A4635 " --> pdb=" O TRP A4631 " (cutoff:3.500A) removed outlier: 4.647A pdb=" N ILE A4636 " --> pdb=" O ASP A4632 " (cutoff:3.500A) removed outlier: 4.549A pdb=" N ASN A4637 " --> pdb=" O ARG A4633 " (cutoff:3.500A) removed outlier: 4.814A pdb=" N THR A4638 " --> pdb=" O LEU A4634 " (cutoff:3.500A) removed outlier: 5.390A pdb=" N GLN A4639 " --> pdb=" O VAL A4635 " (cutoff:3.500A) Processing helix chain 'A' and resid 4649 through 4659 removed outlier: 3.775A pdb=" N VAL A4654 " --> pdb=" O VAL A4650 " (cutoff:3.500A) Processing helix chain 'A' and resid 4663 through 4672 Processing helix chain 'A' and resid 4696 through 4702 removed outlier: 4.926A pdb=" N ASN A4700 " --> pdb=" O SER A4696 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N SER A4701 " --> pdb=" O ALA A4697 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N ILE A4702 " --> pdb=" O VAL A4698 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4696 through 4702' Processing helix chain 'A' and resid 4703 through 4717 removed outlier: 3.504A pdb=" N TRP A4709 " --> pdb=" O LYS A4705 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N VAL A4714 " --> pdb=" O LYS A4710 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N THR A4716 " --> pdb=" O GLY A4712 " (cutoff:3.500A) removed outlier: 4.096A pdb=" N ASP A4717 " --> pdb=" O VAL A4713 " (cutoff:3.500A) Processing helix chain 'A' and resid 4718 through 4736 removed outlier: 3.715A pdb=" N SER A4730 " --> pdb=" O TYR A4726 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N GLY A4733 " --> pdb=" O MET A4729 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N TYR A4735 " --> pdb=" O VAL A4731 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N ASN A4736 " --> pdb=" O LEU A4732 " (cutoff:3.500A) Processing helix chain 'A' and resid 4737 through 4750 removed outlier: 4.471A pdb=" N ALA A4741 " --> pdb=" O ASN A4737 " (cutoff:3.500A) removed outlier: 5.418A pdb=" N ALA A4742 " --> pdb=" O PHE A4738 " (cutoff:3.500A) removed outlier: 7.340A pdb=" N HIS A4743 " --> pdb=" O PHE A4739 " (cutoff:3.500A) removed outlier: 5.726A pdb=" N LEU A4744 " --> pdb=" O PHE A4740 " (cutoff:3.500A) removed outlier: 5.303A pdb=" N LEU A4745 " --> pdb=" O ALA A4741 " (cutoff:3.500A) removed outlier: 5.638A pdb=" N ASP A4746 " --> pdb=" O ALA A4742 " (cutoff:3.500A) removed outlier: 5.372A pdb=" N ILE A4747 " --> pdb=" O HIS A4743 " (cutoff:3.500A) removed outlier: 4.583A pdb=" N ALA A4748 " --> pdb=" O LEU A4744 " (cutoff:3.500A) removed outlier: 4.415A pdb=" N GLY A4750 " --> pdb=" O ASP A4746 " (cutoff:3.500A) Processing helix chain 'A' and resid 4751 through 4764 removed outlier: 3.971A pdb=" N ILE A4757 " --> pdb=" O THR A4753 " (cutoff:3.500A) removed outlier: 3.680A pdb=" N THR A4762 " --> pdb=" O LEU A4758 " (cutoff:3.500A) Processing helix chain 'A' and resid 4765 through 4789 removed outlier: 3.535A pdb=" N LEU A4770 " --> pdb=" O LYS A4766 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N VAL A4777 " --> pdb=" O GLY A4773 " (cutoff:3.500A) Processing helix chain 'A' and resid 4809 through 4824 removed outlier: 6.586A pdb=" N CYS A4813 " --> pdb=" O ASP A4809 " (cutoff:3.500A) removed outlier: 4.633A pdb=" N TYR A4814 " --> pdb=" O MET A4810 " (cutoff:3.500A) removed outlier: 3.765A pdb=" N PHE A4816 " --> pdb=" O THR A4812 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N TYR A4819 " --> pdb=" O MET A4815 " (cutoff:3.500A) removed outlier: 4.893A pdb=" N VAL A4822 " --> pdb=" O MET A4818 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N ARG A4823 " --> pdb=" O TYR A4819 " (cutoff:3.500A) Processing helix chain 'A' and resid 4840 through 4855 removed outlier: 3.611A pdb=" N ILE A4846 " --> pdb=" O ILE A4842 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N PHE A4852 " --> pdb=" O ASP A4848 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N PHE A4854 " --> pdb=" O THR A4850 " (cutoff:3.500A) Processing helix chain 'A' and resid 4859 through 4884 removed outlier: 3.696A pdb=" N ILE A4863 " --> pdb=" O LEU A4859 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N LEU A4866 " --> pdb=" O ILE A4862 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N ILE A4867 " --> pdb=" O ILE A4863 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N ASP A4869 " --> pdb=" O GLY A4865 " (cutoff:3.500A) removed outlier: 4.082A pdb=" N LEU A4874 " --> pdb=" O ALA A4870 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N ARG A4875 " --> pdb=" O PHE A4871 " (cutoff:3.500A) removed outlier: 4.789A pdb=" N GLN A4878 " --> pdb=" O LEU A4874 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N LYS A4882 " --> pdb=" O GLN A4878 " (cutoff:3.500A) Processing helix chain 'A' and resid 4895 through 4903 removed outlier: 5.368A pdb=" N PHE A4899 " --> pdb=" O GLY A4895 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N ASP A4900 " --> pdb=" O ASN A4896 " (cutoff:3.500A) removed outlier: 5.573A pdb=" N VAL A4902 " --> pdb=" O TYR A4898 " (cutoff:3.500A) Proline residue: A4903 - end of helix Processing helix chain 'A' and resid 4904 through 4911 removed outlier: 4.438A pdb=" N THR A4908 " --> pdb=" O HIS A4904 " (cutoff:3.500A) Processing helix chain 'A' and resid 4915 through 4929 removed outlier: 3.869A pdb=" N TYR A4919 " --> pdb=" O ASN A4915 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ILE A4927 " --> pdb=" O LEU A4923 " (cutoff:3.500A) Processing helix chain 'A' and resid 4935 through 4948 removed outlier: 4.038A pdb=" N TRP A4942 " --> pdb=" O GLU A4938 " (cutoff:3.500A) Processing helix chain 'A' and resid 4958 through 4963 removed outlier: 3.822A pdb=" N GLN A4962 " --> pdb=" O CYS A4958 " (cutoff:3.500A) Processing helix chain 'A' and resid 54 through 59 Proline residue: A 59 - end of helix No H-bonds generated for 'chain 'A' and resid 54 through 59' Processing helix chain 'A' and resid 4615 through 4620 Processing helix chain 'D' and resid 61 through 66 removed outlier: 4.103A pdb=" N CYS D 65 " --> pdb=" O ASP D 61 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N THR D 66 " --> pdb=" O LEU D 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 61 through 66' Processing helix chain 'D' and resid 74 through 84 removed outlier: 3.555A pdb=" N ALA D 83 " --> pdb=" O GLN D 79 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N ASN D 84 " --> pdb=" O GLU D 80 " (cutoff:3.500A) Processing helix chain 'D' and resid 266 through 271 removed outlier: 4.333A pdb=" N ALA D 271 " --> pdb=" O VAL D 267 " (cutoff:3.500A) Processing helix chain 'D' and resid 318 through 323 removed outlier: 4.321A pdb=" N ALA D 322 " --> pdb=" O ASP D 318 " (cutoff:3.500A) removed outlier: 6.076A pdb=" N ASP D 323 " --> pdb=" O LYS D 319 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 318 through 323' Processing helix chain 'D' and resid 409 through 439 removed outlier: 3.584A pdb=" N ALA D 416 " --> pdb=" O GLU D 412 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N ARG D 417 " --> pdb=" O SER D 413 " (cutoff:3.500A) removed outlier: 4.493A pdb=" N ARG D 428 " --> pdb=" O PHE D 424 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ALA D 435 " --> pdb=" O ARG D 431 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N LEU D 436 " --> pdb=" O GLY D 432 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N LYS D 438 " --> pdb=" O ASP D 434 " (cutoff:3.500A) removed outlier: 4.773A pdb=" N LYS D 439 " --> pdb=" O ALA D 435 " (cutoff:3.500A) Processing helix chain 'D' and resid 449 through 464 removed outlier: 4.281A pdb=" N GLY D 461 " --> pdb=" O GLN D 457 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N TYR D 462 " --> pdb=" O ASP D 458 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N PHE D 463 " --> pdb=" O LEU D 459 " (cutoff:3.500A) Processing helix chain 'D' and resid 471 through 493 removed outlier: 3.637A pdb=" N GLN D 476 " --> pdb=" O HIS D 472 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N ASN D 487 " --> pdb=" O LYS D 483 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N PHE D 489 " --> pdb=" O ARG D 485 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N GLU D 492 " --> pdb=" O LEU D 488 " (cutoff:3.500A) Processing helix chain 'D' and resid 494 through 507 removed outlier: 3.793A pdb=" N CYS D 501 " --> pdb=" O LEU D 497 " (cutoff:3.500A) removed outlier: 4.481A pdb=" N VAL D 507 " --> pdb=" O ASP D 503 " (cutoff:3.500A) Processing helix chain 'D' and resid 519 through 542 removed outlier: 4.012A pdb=" N GLU D 524 " --> pdb=" O ARG D 520 " (cutoff:3.500A) removed outlier: 5.312A pdb=" N SER D 525 " --> pdb=" O GLU D 521 " (cutoff:3.500A) removed outlier: 6.259A pdb=" N TRP D 526 " --> pdb=" O ALA D 522 " (cutoff:3.500A) removed outlier: 6.090A pdb=" N LYS D 527 " --> pdb=" O GLY D 523 " (cutoff:3.500A) removed outlier: 6.086A pdb=" N SER D 528 " --> pdb=" O GLU D 524 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N GLU D 535 " --> pdb=" O ASN D 531 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ALA D 539 " --> pdb=" O GLU D 535 " (cutoff:3.500A) removed outlier: 4.066A pdb=" N ILE D 541 " --> pdb=" O LEU D 537 " (cutoff:3.500A) Processing helix chain 'D' and resid 544 through 552 removed outlier: 3.730A pdb=" N GLN D 550 " --> pdb=" O LYS D 546 " (cutoff:3.500A) Processing helix chain 'D' and resid 554 through 563 removed outlier: 3.737A pdb=" N SER D 560 " --> pdb=" O ASP D 556 " (cutoff:3.500A) removed outlier: 4.710A pdb=" N GLU D 563 " --> pdb=" O ILE D 559 " (cutoff:3.500A) Processing helix chain 'D' and resid 567 through 582 removed outlier: 3.639A pdb=" N LEU D 575 " --> pdb=" O ILE D 571 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N SER D 582 " --> pdb=" O VAL D 578 " (cutoff:3.500A) Processing helix chain 'D' and resid 583 through 590 removed outlier: 4.162A pdb=" N ASN D 587 " --> pdb=" O PRO D 583 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N ILE D 588 " --> pdb=" O GLU D 584 " (cutoff:3.500A) removed outlier: 5.851A pdb=" N LYS D 590 " --> pdb=" O LEU D 586 " (cutoff:3.500A) Processing helix chain 'D' and resid 591 through 605 removed outlier: 3.809A pdb=" N GLY D 605 " --> pdb=" O LEU D 601 " (cutoff:3.500A) Processing helix chain 'D' and resid 607 through 620 removed outlier: 3.675A pdb=" N VAL D 619 " --> pdb=" O CYS D 615 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N CYS D 620 " --> pdb=" O SER D 616 " (cutoff:3.500A) Processing helix chain 'D' and resid 625 through 640 removed outlier: 3.812A pdb=" N GLN D 629 " --> pdb=" O VAL D 625 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N LEU D 631 " --> pdb=" O SER D 627 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N ASN D 635 " --> pdb=" O LEU D 631 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N LEU D 637 " --> pdb=" O CYS D 633 " (cutoff:3.500A) Proline residue: D 638 - end of helix Processing helix chain 'D' and resid 821 through 827 removed outlier: 3.832A pdb=" N ALA D 825 " --> pdb=" O PRO D 821 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N VAL D 826 " --> pdb=" O CYS D 822 " (cutoff:3.500A) removed outlier: 4.926A pdb=" N LEU D 827 " --> pdb=" O TYR D 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 821 through 827' Processing helix chain 'D' and resid 875 through 901 removed outlier: 4.060A pdb=" N GLU D 879 " --> pdb=" O PRO D 875 " (cutoff:3.500A) removed outlier: 5.533A pdb=" N ARG D 880 " --> pdb=" O PRO D 876 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N ILE D 881 " --> pdb=" O HIS D 877 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N LEU D 892 " --> pdb=" O ASN D 888 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N LYS D 897 " --> pdb=" O TRP D 893 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N LEU D 900 " --> pdb=" O ASN D 896 " (cutoff:3.500A) removed outlier: 4.991A pdb=" N GLY D 901 " --> pdb=" O LYS D 897 " (cutoff:3.500A) Processing helix chain 'D' and resid 925 through 930 removed outlier: 4.633A pdb=" N ASN D 930 " --> pdb=" O GLU D 926 " (cutoff:3.500A) Processing helix chain 'D' and resid 931 through 946 removed outlier: 3.662A pdb=" N LEU D 937 " --> pdb=" O LEU D 933 " (cutoff:3.500A) removed outlier: 4.126A pdb=" N GLU D 938 " --> pdb=" O GLN D 934 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N LEU D 943 " --> pdb=" O THR D 939 " (cutoff:3.500A) removed outlier: 4.322A pdb=" N ALA D 945 " --> pdb=" O LYS D 941 " (cutoff:3.500A) Processing helix chain 'D' and resid 982 through 987 removed outlier: 3.953A pdb=" N ILE D 986 " --> pdb=" O ASP D 982 " (cutoff:3.500A) removed outlier: 5.257A pdb=" N LYS D 987 " --> pdb=" O LEU D 983 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 982 through 987' Processing helix chain 'D' and resid 989 through 1012 removed outlier: 3.728A pdb=" N MET D 995 " --> pdb=" O SER D 991 " (cutoff:3.500A) Processing helix chain 'D' and resid 1042 through 1061 removed outlier: 4.027A pdb=" N ASN D1046 " --> pdb=" O THR D1042 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N SER D1049 " --> pdb=" O SER D1045 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N LEU D1057 " --> pdb=" O ALA D1053 " (cutoff:3.500A) Processing helix chain 'D' and resid 1226 through 1231 removed outlier: 4.117A pdb=" N GLY D1231 " --> pdb=" O PHE D1227 " (cutoff:3.500A) Processing helix chain 'D' and resid 1571 through 1577 removed outlier: 4.524A pdb=" N HIS D1575 " --> pdb=" O PHE D1571 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N LYS D1576 " --> pdb=" O LYS D1572 " (cutoff:3.500A) removed outlier: 5.252A pdb=" N ASN D1577 " --> pdb=" O SER D1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1571 through 1577' Processing helix chain 'D' and resid 1643 through 1648 removed outlier: 4.364A pdb=" N GLN D1647 " --> pdb=" O GLU D1643 " (cutoff:3.500A) removed outlier: 4.399A pdb=" N GLU D1648 " --> pdb=" O LEU D1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1643 through 1648' Processing helix chain 'D' and resid 1649 through 1666 removed outlier: 4.178A pdb=" N PHE D1653 " --> pdb=" O GLU D1649 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N CYS D1665 " --> pdb=" O TYR D1661 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N ALA D1666 " --> pdb=" O SER D1662 " (cutoff:3.500A) Processing helix chain 'D' and resid 1669 through 1681 removed outlier: 3.581A pdb=" N SER D1678 " --> pdb=" O HIS D1674 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N HIS D1679 " --> pdb=" O ALA D1675 " (cutoff:3.500A) Processing helix chain 'D' and resid 1682 through 1691 removed outlier: 3.565A pdb=" N TYR D1687 " --> pdb=" O PRO D1683 " (cutoff:3.500A) removed outlier: 4.583A pdb=" N GLU D1690 " --> pdb=" O LEU D1686 " (cutoff:3.500A) Processing helix chain 'D' and resid 1695 through 1710 removed outlier: 3.551A pdb=" N TYR D1702 " --> pdb=" O LEU D1698 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N ILE D1707 " --> pdb=" O TYR D1703 " (cutoff:3.500A) Processing helix chain 'D' and resid 1711 through 1722 removed outlier: 4.606A pdb=" N ALA D1715 " --> pdb=" O LEU D1711 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N ALA D1717 " --> pdb=" O SER D1713 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N MET D1721 " --> pdb=" O ALA D1717 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N ASN D1722 " --> pdb=" O ARG D1718 " (cutoff:3.500A) Processing helix chain 'D' and resid 1730 through 1736 removed outlier: 3.796A pdb=" N LYS D1734 " --> pdb=" O THR D1730 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N SER D1735 " --> pdb=" O GLU D1731 " (cutoff:3.500A) removed outlier: 4.916A pdb=" N ILE D1736 " --> pdb=" O GLU D1732 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1730 through 1736' Processing helix chain 'D' and resid 1771 through 1776 removed outlier: 4.558A pdb=" N CYS D1775 " --> pdb=" O ILE D1771 " (cutoff:3.500A) removed outlier: 5.455A pdb=" N TYR D1776 " --> pdb=" O ASN D1772 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1771 through 1776' Processing helix chain 'D' and resid 1783 through 1805 removed outlier: 4.095A pdb=" N LEU D1787 " --> pdb=" O PRO D1783 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N ILE D1792 " --> pdb=" O LYS D1788 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N GLU D1801 " --> pdb=" O GLU D1797 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N LEU D1804 " --> pdb=" O GLN D1800 " (cutoff:3.500A) Processing helix chain 'D' and resid 1813 through 1832 removed outlier: 3.503A pdb=" N LEU D1817 " --> pdb=" O THR D1813 " (cutoff:3.500A) Proline residue: D1820 - end of helix removed outlier: 3.557A pdb=" N MET D1831 " --> pdb=" O THR D1827 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N GLY D1832 " --> pdb=" O LEU D1828 " (cutoff:3.500A) Processing helix chain 'D' and resid 1835 through 1847 removed outlier: 3.765A pdb=" N LYS D1840 " --> pdb=" O ASN D1836 " (cutoff:3.500A) Processing helix chain 'D' and resid 1901 through 1938 removed outlier: 4.223A pdb=" N GLN D1906 " --> pdb=" O PRO D1902 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N TYR D1913 " --> pdb=" O LEU D1909 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N LEU D1914 " --> pdb=" O LEU D1910 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N CYS D1915 " --> pdb=" O LEU D1911 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ALA D1928 " --> pdb=" O GLU D1924 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N SER D1930 " --> pdb=" O ILE D1926 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N ASP D1932 " --> pdb=" O ALA D1928 " (cutoff:3.500A) Processing helix chain 'D' and resid 1940 through 1953 removed outlier: 3.506A pdb=" N GLN D1950 " --> pdb=" O ASN D1946 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N ASN D1953 " --> pdb=" O MET D1949 " (cutoff:3.500A) Processing helix chain 'D' and resid 1990 through 1998 removed outlier: 5.321A pdb=" N ARG D1994 " --> pdb=" O PRO D1990 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N GLN D1996 " --> pdb=" O GLU D1992 " (cutoff:3.500A) removed outlier: 4.709A pdb=" N LEU D1998 " --> pdb=" O ARG D1994 " (cutoff:3.500A) Processing helix chain 'D' and resid 1999 through 2008 Processing helix chain 'D' and resid 2026 through 2039 removed outlier: 3.885A pdb=" N LEU D2030 " --> pdb=" O ILE D2026 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N LEU D2031 " --> pdb=" O ARG D2027 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N VAL D2034 " --> pdb=" O LEU D2030 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N GLU D2035 " --> pdb=" O LEU D2031 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N LYS D2036 " --> pdb=" O SER D2032 " (cutoff:3.500A) removed outlier: 4.686A pdb=" N TYR D2039 " --> pdb=" O GLU D2035 " (cutoff:3.500A) Processing helix chain 'D' and resid 2058 through 2074 removed outlier: 4.207A pdb=" N LEU D2062 " --> pdb=" O THR D2058 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N VAL D2068 " --> pdb=" O SER D2064 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N GLU D2073 " --> pdb=" O ARG D2069 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N SER D2074 " --> pdb=" O TRP D2070 " (cutoff:3.500A) Processing helix chain 'D' and resid 2078 through 2095 removed outlier: 3.701A pdb=" N ALA D2084 " --> pdb=" O GLU D2080 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N VAL D2087 " --> pdb=" O ARG D2083 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N LEU D2088 " --> pdb=" O ALA D2084 " (cutoff:3.500A) Processing helix chain 'D' and resid 2096 through 2106 Proline residue: D2104 - end of helix Processing helix chain 'D' and resid 2110 through 2132 removed outlier: 3.979A pdb=" N VAL D2114 " --> pdb=" O ASN D2110 " (cutoff:3.500A) removed outlier: 5.156A pdb=" N GLU D2115 " --> pdb=" O GLY D2111 " (cutoff:3.500A) removed outlier: 5.064A pdb=" N ASP D2116 " --> pdb=" O VAL D2112 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N ILE D2118 " --> pdb=" O VAL D2114 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N ASN D2119 " --> pdb=" O GLU D2115 " (cutoff:3.500A) removed outlier: 4.741A pdb=" N SER D2132 " --> pdb=" O ARG D2128 " (cutoff:3.500A) Processing helix chain 'D' and resid 2138 through 2153 removed outlier: 3.592A pdb=" N LEU D2142 " --> pdb=" O GLU D2138 " (cutoff:3.500A) removed outlier: 3.926A pdb=" N MET D2143 " --> pdb=" O GLU D2139 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ASP D2149 " --> pdb=" O ARG D2145 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N ILE D2150 " --> pdb=" O GLY D2146 " (cutoff:3.500A) removed outlier: 4.447A pdb=" N ASN D2153 " --> pdb=" O ASP D2149 " (cutoff:3.500A) Processing helix chain 'D' and resid 2154 through 2160 removed outlier: 3.718A pdb=" N GLN D2158 " --> pdb=" O LYS D2154 " (cutoff:3.500A) removed outlier: 6.104A pdb=" N HIS D2159 " --> pdb=" O VAL D2155 " (cutoff:3.500A) Proline residue: D2160 - end of helix No H-bonds generated for 'chain 'D' and resid 2154 through 2160' Processing helix chain 'D' and resid 2161 through 2167 removed outlier: 3.648A pdb=" N GLY D2167 " --> pdb=" O MET D2163 " (cutoff:3.500A) Processing helix chain 'D' and resid 2168 through 2181 removed outlier: 3.791A pdb=" N VAL D2172 " --> pdb=" O MET D2168 " (cutoff:3.500A) removed outlier: 5.379A pdb=" N GLY D2181 " --> pdb=" O VAL D2177 " (cutoff:3.500A) Processing helix chain 'D' and resid 2191 through 2209 removed outlier: 3.938A pdb=" N CYS D2197 " --> pdb=" O MET D2193 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N PHE D2200 " --> pdb=" O ASN D2196 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ARG D2206 " --> pdb=" O CYS D2202 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N ILE D2207 " --> pdb=" O TYR D2203 " (cutoff:3.500A) removed outlier: 5.040A pdb=" N SER D2208 " --> pdb=" O PHE D2204 " (cutoff:3.500A) removed outlier: 5.322A pdb=" N ARG D2209 " --> pdb=" O CYS D2205 " (cutoff:3.500A) Processing helix chain 'D' and resid 2210 through 2217 removed outlier: 3.895A pdb=" N ALA D2214 " --> pdb=" O GLN D2210 " (cutoff:3.500A) removed outlier: 4.157A pdb=" N ASP D2217 " --> pdb=" O LYS D2213 " (cutoff:3.500A) Processing helix chain 'D' and resid 2218 through 2225 removed outlier: 4.410A pdb=" N GLU D2224 " --> pdb=" O SER D2220 " (cutoff:3.500A) removed outlier: 4.774A pdb=" N ASN D2225 " --> pdb=" O TYR D2221 " (cutoff:3.500A) Processing helix chain 'D' and resid 2232 through 2239 removed outlier: 4.609A pdb=" N ARG D2236 " --> pdb=" O SER D2232 " (cutoff:3.500A) removed outlier: 8.633A pdb=" N GLY D2237 " --> pdb=" O PRO D2233 " (cutoff:3.500A) removed outlier: 5.162A pdb=" N SER D2238 " --> pdb=" O ALA D2234 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N THR D2239 " --> pdb=" O MET D2235 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 2232 through 2239' Processing helix chain 'D' and resid 2240 through 2249 removed outlier: 3.772A pdb=" N VAL D2248 " --> pdb=" O ALA D2244 " (cutoff:3.500A) Processing helix chain 'D' and resid 2251 through 2258 removed outlier: 3.758A pdb=" N LEU D2258 " --> pdb=" O LEU D2254 " (cutoff:3.500A) Processing helix chain 'D' and resid 2259 through 2274 removed outlier: 3.806A pdb=" N LEU D2263 " --> pdb=" O ARG D2259 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N VAL D2266 " --> pdb=" O ASP D2262 " (cutoff:3.500A) removed outlier: 5.325A pdb=" N GLY D2274 " --> pdb=" O LEU D2270 " (cutoff:3.500A) Processing helix chain 'D' and resid 2293 through 2308 removed outlier: 5.255A pdb=" N GLU D2297 " --> pdb=" O PRO D2293 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N ARG D2298 " --> pdb=" O VAL D2294 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N TYR D2299 " --> pdb=" O GLU D2295 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N LEU D2300 " --> pdb=" O GLY D2296 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N ARG D2304 " --> pdb=" O LEU D2300 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N PHE D2305 " --> pdb=" O ASP D2301 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N ALA D2306 " --> pdb=" O PHE D2302 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N PHE D2308 " --> pdb=" O ARG D2304 " (cutoff:3.500A) Processing helix chain 'D' and resid 2314 through 2329 removed outlier: 4.537A pdb=" N ALA D2318 " --> pdb=" O VAL D2314 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N ASN D2319 " --> pdb=" O GLU D2315 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N VAL D2322 " --> pdb=" O ALA D2318 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N ARG D2327 " --> pdb=" O ARG D2323 " (cutoff:3.500A) removed outlier: 4.557A pdb=" N ARG D2328 " --> pdb=" O LEU D2324 " (cutoff:3.500A) Proline residue: D2329 - end of helix Processing helix chain 'D' and resid 2343 through 2355 removed outlier: 3.585A pdb=" N GLU D2349 " --> pdb=" O LEU D2345 " (cutoff:3.500A) removed outlier: 4.353A pdb=" N GLU D2350 " --> pdb=" O ALA D2346 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ALA D2351 " --> pdb=" O ALA D2347 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N ILE D2352 " --> pdb=" O MET D2348 " (cutoff:3.500A) removed outlier: 4.465A pdb=" N LYS D2353 " --> pdb=" O GLU D2349 " (cutoff:3.500A) removed outlier: 4.322A pdb=" N ILE D2354 " --> pdb=" O GLU D2350 " (cutoff:3.500A) removed outlier: 5.842A pdb=" N ALA D2355 " --> pdb=" O ALA D2351 " (cutoff:3.500A) Processing helix chain 'D' and resid 2386 through 2404 removed outlier: 3.645A pdb=" N MET D2390 " --> pdb=" O GLY D2386 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N ALA D2394 " --> pdb=" O MET D2390 " (cutoff:3.500A) removed outlier: 3.634A pdb=" N ILE D2397 " --> pdb=" O TYR D2393 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N ARG D2402 " --> pdb=" O ASP D2398 " (cutoff:3.500A) removed outlier: 4.271A pdb=" N ALA D2404 " --> pdb=" O LEU D2400 " (cutoff:3.500A) Processing helix chain 'D' and resid 2408 through 2413 removed outlier: 4.117A pdb=" N ALA D2412 " --> pdb=" O HIS D2408 " (cutoff:3.500A) Processing helix chain 'D' and resid 2414 through 2429 removed outlier: 4.798A pdb=" N ILE D2418 " --> pdb=" O LYS D2414 " (cutoff:3.500A) removed outlier: 6.351A pdb=" N ARG D2419 " --> pdb=" O GLY D2415 " (cutoff:3.500A) removed outlier: 4.797A pdb=" N ILE D2420 " --> pdb=" O GLU D2416 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N ARG D2421 " --> pdb=" O ALA D2417 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N ILE D2423 " --> pdb=" O ARG D2419 " (cutoff:3.500A) removed outlier: 3.976A pdb=" N ILE D2428 " --> pdb=" O LEU D2424 " (cutoff:3.500A) Proline residue: D2429 - end of helix Processing helix chain 'D' and resid 2432 through 2437 Processing helix chain 'D' and resid 2462 through 2477 removed outlier: 3.692A pdb=" N LYS D2466 " --> pdb=" O CYS D2462 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ALA D2467 " --> pdb=" O PRO D2463 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N ALA D2468 " --> pdb=" O ASP D2464 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N PHE D2472 " --> pdb=" O ALA D2468 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N ARG D2475 " --> pdb=" O LEU D2471 " (cutoff:3.500A) Processing helix chain 'D' and resid 2481 through 2489 removed outlier: 4.133A pdb=" N LEU D2485 " --> pdb=" O VAL D2481 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N LEU D2486 " --> pdb=" O GLN D2482 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N LEU D2489 " --> pdb=" O LEU D2485 " (cutoff:3.500A) Processing helix chain 'D' and resid 2494 through 2500 removed outlier: 4.527A pdb=" N ARG D2498 " --> pdb=" O LEU D2494 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ALA D2499 " --> pdb=" O PRO D2495 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N ALA D2500 " --> pdb=" O ASP D2496 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 2494 through 2500' Processing helix chain 'D' and resid 2514 through 2528 removed outlier: 4.347A pdb=" N ASN D2518 " --> pdb=" O ALA D2514 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N ARG D2519 " --> pdb=" O LEU D2515 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N LEU D2521 " --> pdb=" O LEU D2517 " (cutoff:3.500A) removed outlier: 4.805A pdb=" N CYS D2522 " --> pdb=" O ASN D2518 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N THR D2523 " --> pdb=" O ARG D2519 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N VAL D2525 " --> pdb=" O LEU D2521 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N LEU D2526 " --> pdb=" O CYS D2522 " (cutoff:3.500A) Proline residue: D2527 - end of helix Processing helix chain 'D' and resid 2536 through 2553 removed outlier: 4.792A pdb=" N GLU D2540 " --> pdb=" O PHE D2536 " (cutoff:3.500A) Processing helix chain 'D' and resid 2558 through 2576 removed outlier: 3.880A pdb=" N GLU D2571 " --> pdb=" O ARG D2567 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N VAL D2572 " --> pdb=" O ASP D2568 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N CYS D2573 " --> pdb=" O SER D2569 " (cutoff:3.500A) removed outlier: 3.981A pdb=" N LEU D2574 " --> pdb=" O ILE D2570 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N SER D2576 " --> pdb=" O VAL D2572 " (cutoff:3.500A) Processing helix chain 'D' and resid 2582 through 2601 removed outlier: 4.074A pdb=" N MET D2586 " --> pdb=" O ARG D2582 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ARG D2592 " --> pdb=" O HIS D2588 " (cutoff:3.500A) Proline residue: D2598 - end of helix Processing helix chain 'D' and resid 2605 through 2625 removed outlier: 3.773A pdb=" N LEU D2611 " --> pdb=" O PRO D2607 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ASN D2613 " --> pdb=" O LYS D2609 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N HIS D2614 " --> pdb=" O LEU D2610 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N TYR D2615 " --> pdb=" O LEU D2611 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ARG D2617 " --> pdb=" O ASN D2613 " (cutoff:3.500A) Proline residue: D2625 - end of helix Processing helix chain 'D' and resid 2635 through 2653 removed outlier: 4.143A pdb=" N ALA D2652 " --> pdb=" O GLY D2648 " (cutoff:3.500A) removed outlier: 4.775A pdb=" N LEU D2653 " --> pdb=" O ILE D2649 " (cutoff:3.500A) Processing helix chain 'D' and resid 2659 through 2677 removed outlier: 3.802A pdb=" N PHE D2663 " --> pdb=" O GLU D2659 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N LEU D2665 " --> pdb=" O GLU D2661 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ALA D2666 " --> pdb=" O LEU D2662 " (cutoff:3.500A) Proline residue: D2668 - end of helix Processing helix chain 'D' and resid 2719 through 2739 removed outlier: 4.708A pdb=" N ASN D2723 " --> pdb=" O GLU D2719 " (cutoff:3.500A) removed outlier: 5.044A pdb=" N LYS D2724 " --> pdb=" O TYR D2720 " (cutoff:3.500A) removed outlier: 3.623A pdb=" N ASP D2736 " --> pdb=" O LYS D2732 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N LYS D2737 " --> pdb=" O TRP D2733 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N ALA D2739 " --> pdb=" O MET D2735 " (cutoff:3.500A) Processing helix chain 'D' and resid 2765 through 2774 removed outlier: 4.110A pdb=" N LYS D2769 " --> pdb=" O SER D2765 " (cutoff:3.500A) removed outlier: 5.385A pdb=" N GLU D2770 " --> pdb=" O GLU D2766 " (cutoff:3.500A) removed outlier: 6.653A pdb=" N ILE D2771 " --> pdb=" O LYS D2767 " (cutoff:3.500A) removed outlier: 6.093A pdb=" N TYR D2772 " --> pdb=" O GLU D2768 " (cutoff:3.500A) removed outlier: 4.304A pdb=" N TRP D2774 " --> pdb=" O GLU D2770 " (cutoff:3.500A) Processing helix chain 'D' and resid 2775 through 2787 removed outlier: 3.900A pdb=" N SER D2779 " --> pdb=" O PRO D2775 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N LYS D2781 " --> pdb=" O LYS D2777 " (cutoff:3.500A) removed outlier: 5.035A pdb=" N THR D2782 " --> pdb=" O GLU D2778 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N TRP D2786 " --> pdb=" O THR D2782 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N GLY D2787 " --> pdb=" O MET D2783 " (cutoff:3.500A) Processing helix chain 'D' and resid 2835 through 2863 removed outlier: 3.718A pdb=" N MET D2841 " --> pdb=" O ASP D2837 " (cutoff:3.500A) removed outlier: 3.911A pdb=" N MET D2844 " --> pdb=" O ALA D2840 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ASN D2848 " --> pdb=" O MET D2844 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N HIS D2850 " --> pdb=" O ALA D2846 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N ASN D2851 " --> pdb=" O GLU D2847 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N TRP D2853 " --> pdb=" O TYR D2849 " (cutoff:3.500A) removed outlier: 5.122A pdb=" N SER D2863 " --> pdb=" O LEU D2859 " (cutoff:3.500A) Processing helix chain 'D' and resid 2881 through 2894 removed outlier: 3.514A pdb=" N ASP D2886 " --> pdb=" O GLU D2882 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N GLU D2888 " --> pdb=" O ALA D2884 " (cutoff:3.500A) removed outlier: 4.497A pdb=" N LYS D2889 " --> pdb=" O LYS D2885 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N ALA D2890 " --> pdb=" O ASP D2886 " (cutoff:3.500A) removed outlier: 4.436A pdb=" N ILE D2893 " --> pdb=" O LYS D2889 " (cutoff:3.500A) removed outlier: 4.722A pdb=" N LEU D2894 " --> pdb=" O ALA D2890 " (cutoff:3.500A) Processing helix chain 'D' and resid 2987 through 3004 removed outlier: 4.664A pdb=" N LEU D2991 " --> pdb=" O ALA D2987 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N LYS D3000 " --> pdb=" O HIS D2996 " (cutoff:3.500A) removed outlier: 4.100A pdb=" N GLU D3003 " --> pdb=" O ASN D2999 " (cutoff:3.500A) removed outlier: 4.375A pdb=" N MET D3004 " --> pdb=" O LYS D3000 " (cutoff:3.500A) Processing helix chain 'D' and resid 3011 through 3028 removed outlier: 4.278A pdb=" N ALA D3027 " --> pdb=" O PHE D3023 " (cutoff:3.500A) removed outlier: 4.029A pdb=" N THR D3028 " --> pdb=" O GLY D3024 " (cutoff:3.500A) Processing helix chain 'D' and resid 3035 through 3052 removed outlier: 3.934A pdb=" N GLU D3052 " --> pdb=" O LYS D3048 " (cutoff:3.500A) Processing helix chain 'D' and resid 3062 through 3082 removed outlier: 4.250A pdb=" N ALA D3066 " --> pdb=" O LEU D3062 " (cutoff:3.500A) removed outlier: 4.597A pdb=" N GLU D3067 " --> pdb=" O ASP D3063 " (cutoff:3.500A) removed outlier: 3.982A pdb=" N ASP D3068 " --> pdb=" O ASN D3064 " (cutoff:3.500A) removed outlier: 5.211A pdb=" N LEU D3069 " --> pdb=" O ALA D3065 " (cutoff:3.500A) removed outlier: 5.584A pdb=" N GLU D3070 " --> pdb=" O ALA D3066 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N MET D3073 " --> pdb=" O LEU D3069 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N GLN D3080 " --> pdb=" O LEU D3076 " (cutoff:3.500A) removed outlier: 4.118A pdb=" N PHE D3081 " --> pdb=" O LYS D3077 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N THR D3082 " --> pdb=" O GLN D3078 " (cutoff:3.500A) Processing helix chain 'D' and resid 3100 through 3117 Proline residue: D3104 - end of helix removed outlier: 3.579A pdb=" N SER D3107 " --> pdb=" O LEU D3103 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N HIS D3112 " --> pdb=" O SER D3108 " (cutoff:3.500A) removed outlier: 5.099A pdb=" N GLN D3117 " --> pdb=" O ILE D3113 " (cutoff:3.500A) Processing helix chain 'D' and resid 3125 through 3142 removed outlier: 3.895A pdb=" N SER D3137 " --> pdb=" O ARG D3133 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ALA D3140 " --> pdb=" O THR D3136 " (cutoff:3.500A) removed outlier: 4.371A pdb=" N GLY D3142 " --> pdb=" O LEU D3138 " (cutoff:3.500A) Processing helix chain 'D' and resid 3152 through 3163 removed outlier: 3.633A pdb=" N LEU D3160 " --> pdb=" O LEU D3156 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N ALA D3161 " --> pdb=" O GLY D3157 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N ALA D3162 " --> pdb=" O GLU D3158 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N PHE D3163 " --> pdb=" O CYS D3159 " (cutoff:3.500A) Processing helix chain 'D' and resid 3172 through 3182 removed outlier: 4.218A pdb=" N HIS D3179 " --> pdb=" O HIS D3175 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N ASN D3180 " --> pdb=" O LEU D3176 " (cutoff:3.500A) Processing helix chain 'D' and resid 3585 through 3607 removed outlier: 3.942A pdb=" N LEU D3592 " --> pdb=" O TRP D3588 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N SER D3593 " --> pdb=" O HIS D3589 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N LYS D3594 " --> pdb=" O LYS D3590 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N VAL D3601 " --> pdb=" O LYS D3597 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N ALA D3607 " --> pdb=" O CYS D3603 " (cutoff:3.500A) Processing helix chain 'D' and resid 3613 through 3629 removed outlier: 3.779A pdb=" N GLN D3623 " --> pdb=" O ASN D3619 " (cutoff:3.500A) Processing helix chain 'D' and resid 3636 through 3647 removed outlier: 4.064A pdb=" N LYS D3640 " --> pdb=" O TYR D3636 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N GLU D3643 " --> pdb=" O ASP D3639 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N LYS D3647 " --> pdb=" O GLU D3643 " (cutoff:3.500A) Processing helix chain 'D' and resid 3663 through 3678 removed outlier: 3.589A pdb=" N LEU D3668 " --> pdb=" O PRO D3664 " (cutoff:3.500A) removed outlier: 4.424A pdb=" N THR D3678 " --> pdb=" O ARG D3674 " (cutoff:3.500A) Processing helix chain 'D' and resid 3686 through 3700 removed outlier: 4.132A pdb=" N ASP D3694 " --> pdb=" O MET D3690 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N ALA D3697 " --> pdb=" O ALA D3693 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N SER D3699 " --> pdb=" O ILE D3695 " (cutoff:3.500A) removed outlier: 5.318A pdb=" N CYS D3700 " --> pdb=" O MET D3696 " (cutoff:3.500A) Processing helix chain 'D' and resid 3714 through 3734 removed outlier: 4.117A pdb=" N LYS D3718 " --> pdb=" O SER D3714 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N LYS D3722 " --> pdb=" O LYS D3718 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N LEU D3732 " --> pdb=" O GLN D3728 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ASP D3734 " --> pdb=" O ALA D3730 " (cutoff:3.500A) Processing helix chain 'D' and resid 3736 through 3749 removed outlier: 3.560A pdb=" N MET D3740 " --> pdb=" O GLY D3736 " (cutoff:3.500A) removed outlier: 4.119A pdb=" N VAL D3741 " --> pdb=" O ALA D3737 " (cutoff:3.500A) removed outlier: 4.133A pdb=" N LEU D3742 " --> pdb=" O ALA D3738 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N ILE D3745 " --> pdb=" O VAL D3741 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N SER D3746 " --> pdb=" O LEU D3742 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N SER D3748 " --> pdb=" O THR D3744 " (cutoff:3.500A) removed outlier: 4.874A pdb=" N LYS D3749 " --> pdb=" O ILE D3745 " (cutoff:3.500A) Processing helix chain 'D' and resid 3753 through 3768 removed outlier: 3.723A pdb=" N LYS D3761 " --> pdb=" O ALA D3757 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N ALA D3765 " --> pdb=" O LYS D3761 " (cutoff:3.500A) Processing helix chain 'D' and resid 3771 through 3786 removed outlier: 3.767A pdb=" N LEU D3779 " --> pdb=" O GLN D3775 " (cutoff:3.500A) removed outlier: 3.820A pdb=" N GLU D3784 " --> pdb=" O GLU D3780 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N LYS D3786 " --> pdb=" O LEU D3782 " (cutoff:3.500A) Processing helix chain 'D' and resid 3787 through 3801 removed outlier: 4.765A pdb=" N PHE D3791 " --> pdb=" O ASP D3787 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N SER D3793 " --> pdb=" O GLY D3789 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N GLY D3796 " --> pdb=" O GLN D3792 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N SER D3800 " --> pdb=" O GLY D3796 " (cutoff:3.500A) removed outlier: 3.989A pdb=" N CYS D3801 " --> pdb=" O LEU D3797 " (cutoff:3.500A) Processing helix chain 'D' and resid 3805 through 3819 removed outlier: 3.910A pdb=" N PHE D3809 " --> pdb=" O ASP D3805 " (cutoff:3.500A) Processing helix chain 'D' and resid 3833 through 3849 removed outlier: 3.642A pdb=" N THR D3837 " --> pdb=" O ASP D3833 " (cutoff:3.500A) removed outlier: 3.912A pdb=" N PHE D3841 " --> pdb=" O THR D3837 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N PHE D3843 " --> pdb=" O ASP D3839 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N LEU D3847 " --> pdb=" O PHE D3843 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N CYS D3848 " --> pdb=" O LEU D3844 " (cutoff:3.500A) Processing helix chain 'D' and resid 3852 through 3861 removed outlier: 3.544A pdb=" N ASN D3857 " --> pdb=" O SER D3853 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N TYR D3858 " --> pdb=" O ASP D3854 " (cutoff:3.500A) removed outlier: 3.949A pdb=" N ARG D3860 " --> pdb=" O GLN D3856 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N THR D3861 " --> pdb=" O ASN D3857 " (cutoff:3.500A) Processing helix chain 'D' and resid 3870 through 3894 removed outlier: 3.543A pdb=" N VAL D3876 " --> pdb=" O ILE D3872 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N TYR D3878 " --> pdb=" O SER D3874 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N LEU D3879 " --> pdb=" O THR D3875 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N ARG D3881 " --> pdb=" O ASP D3877 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N SER D3885 " --> pdb=" O ARG D3881 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N TYR D3893 " --> pdb=" O PHE D3889 " (cutoff:3.500A) Processing helix chain 'D' and resid 3900 through 3926 removed outlier: 3.525A pdb=" N PHE D3907 " --> pdb=" O GLY D3903 " (cutoff:3.500A) removed outlier: 4.021A pdb=" N LYS D3909 " --> pdb=" O ARG D3905 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N ALA D3910 " --> pdb=" O ASN D3906 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N GLN D3912 " --> pdb=" O SER D3908 " (cutoff:3.500A) removed outlier: 4.503A pdb=" N VAL D3913 " --> pdb=" O LYS D3909 " (cutoff:3.500A) removed outlier: 3.660A pdb=" N PHE D3918 " --> pdb=" O ALA D3914 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N GLU D3923 " --> pdb=" O ASN D3919 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N TYR D3924 " --> pdb=" O THR D3920 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ILE D3925 " --> pdb=" O LEU D3921 " (cutoff:3.500A) Processing helix chain 'D' and resid 3929 through 3940 removed outlier: 3.562A pdb=" N SER D3935 " --> pdb=" O GLY D3931 " (cutoff:3.500A) removed outlier: 4.411A pdb=" N SER D3939 " --> pdb=" O SER D3935 " (cutoff:3.500A) removed outlier: 4.898A pdb=" N ARG D3940 " --> pdb=" O LEU D3936 " (cutoff:3.500A) Processing helix chain 'D' and resid 3941 through 3959 removed outlier: 3.604A pdb=" N VAL D3945 " --> pdb=" O LEU D3941 " (cutoff:3.500A) removed outlier: 4.213A pdb=" N HIS D3954 " --> pdb=" O HIS D3950 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N LYS D3958 " --> pdb=" O HIS D3954 " (cutoff:3.500A) Processing helix chain 'D' and resid 3965 through 3989 removed outlier: 3.680A pdb=" N LEU D3969 " --> pdb=" O GLN D3965 " (cutoff:3.500A) removed outlier: 4.182A pdb=" N GLU D3971 " --> pdb=" O GLU D3967 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N GLN D3976 " --> pdb=" O LEU D3972 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N MET D3982 " --> pdb=" O ASP D3978 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N LEU D3987 " --> pdb=" O LEU D3983 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N GLU D3988 " --> pdb=" O LEU D3984 " (cutoff:3.500A) removed outlier: 5.557A pdb=" N GLY D3989 " --> pdb=" O SER D3985 " (cutoff:3.500A) Processing helix chain 'D' and resid 3994 through 4008 removed outlier: 3.654A pdb=" N VAL D4001 " --> pdb=" O GLY D3997 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N LEU D4004 " --> pdb=" O MET D4000 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N SER D4008 " --> pdb=" O LEU D4004 " (cutoff:3.500A) Processing helix chain 'D' and resid 4009 through 4028 removed outlier: 4.691A pdb=" N MET D4013 " --> pdb=" O ASN D4009 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N ILE D4014 " --> pdb=" O ASN D4010 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N PHE D4021 " --> pdb=" O PHE D4017 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N LEU D4024 " --> pdb=" O MET D4020 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N LYS D4025 " --> pdb=" O PHE D4021 " (cutoff:3.500A) removed outlier: 4.076A pdb=" N THR D4028 " --> pdb=" O LEU D4024 " (cutoff:3.500A) Processing helix chain 'D' and resid 4030 through 4035 Processing helix chain 'D' and resid 4046 through 4057 removed outlier: 3.529A pdb=" N MET D4053 " --> pdb=" O PHE D4049 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N GLU D4054 " --> pdb=" O HIS D4050 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N LYS D4057 " --> pdb=" O MET D4053 " (cutoff:3.500A) Processing helix chain 'D' and resid 4060 through 4069 Processing helix chain 'D' and resid 4081 through 4110 Proline residue: D4091 - end of helix removed outlier: 4.108A pdb=" N ASP D4094 " --> pdb=" O GLU D4090 " (cutoff:3.500A) removed outlier: 4.718A pdb=" N ILE D4095 " --> pdb=" O PRO D4091 " (cutoff:3.500A) removed outlier: 5.229A pdb=" N GLY D4096 " --> pdb=" O ALA D4092 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ASN D4098 " --> pdb=" O ASP D4094 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N VAL D4099 " --> pdb=" O ILE D4095 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N SER D4107 " --> pdb=" O LEU D4103 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N HIS D4109 " --> pdb=" O ASN D4105 " (cutoff:3.500A) Processing helix chain 'D' and resid 4113 through 4124 removed outlier: 4.129A pdb=" N GLN D4117 " --> pdb=" O ASP D4113 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N PHE D4119 " --> pdb=" O ARG D4115 " (cutoff:3.500A) Processing helix chain 'D' and resid 4125 through 4135 removed outlier: 3.617A pdb=" N TYR D4129 " --> pdb=" O SER D4125 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N GLN D4131 " --> pdb=" O LEU D4127 " (cutoff:3.500A) Proline residue: D4132 - end of helix removed outlier: 6.035A pdb=" N GLY D4135 " --> pdb=" O GLN D4131 " (cutoff:3.500A) Processing helix chain 'D' and resid 4154 through 4164 removed outlier: 3.974A pdb=" N ARG D4158 " --> pdb=" O SER D4154 " (cutoff:3.500A) removed outlier: 3.933A pdb=" N TRP D4161 " --> pdb=" O SER D4157 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N GLU D4162 " --> pdb=" O ARG D4158 " (cutoff:3.500A) Proline residue: D4164 - end of helix Processing helix chain 'D' and resid 4165 through 4180 removed outlier: 4.363A pdb=" N SER D4169 " --> pdb=" O GLN D4165 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N ARG D4171 " --> pdb=" O LYS D4167 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N ASP D4176 " --> pdb=" O GLN D4172 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N VAL D4177 " --> pdb=" O PHE D4173 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N VAL D4178 " --> pdb=" O ILE D4174 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N ASN D4179 " --> pdb=" O PHE D4175 " (cutoff:3.500A) removed outlier: 5.474A pdb=" N GLU D4180 " --> pdb=" O ASP D4176 " (cutoff:3.500A) Processing helix chain 'D' and resid 4182 through 4207 removed outlier: 4.196A pdb=" N MET D4187 " --> pdb=" O GLU D4183 " (cutoff:3.500A) removed outlier: 5.279A pdb=" N GLU D4188 " --> pdb=" O LYS D4184 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ASP D4196 " --> pdb=" O ASN D4192 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ILE D4198 " --> pdb=" O CYS D4194 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N PHE D4199 " --> pdb=" O GLU D4195 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N GLN D4206 " --> pdb=" O GLN D4202 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N ILE D4207 " --> pdb=" O LEU D4203 " (cutoff:3.500A) Processing helix chain 'D' and resid 4486 through 4500 removed outlier: 3.603A pdb=" N PHE D4500 " --> pdb=" O PHE D4496 " (cutoff:3.500A) Processing helix chain 'D' and resid 4501 through 4520 removed outlier: 3.761A pdb=" N MET D4505 " --> pdb=" O TYR D4501 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N LEU D4506 " --> pdb=" O ASN D4502 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N PHE D4509 " --> pdb=" O MET D4505 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N ALA D4511 " --> pdb=" O ALA D4507 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N ASN D4515 " --> pdb=" O ALA D4511 " (cutoff:3.500A) removed outlier: 4.462A pdb=" N LEU D4519 " --> pdb=" O ASN D4515 " (cutoff:3.500A) removed outlier: 5.288A pdb=" N PHE D4520 " --> pdb=" O PHE D4516 " (cutoff:3.500A) Processing helix chain 'D' and resid 4568 through 4614 removed outlier: 5.161A pdb=" N THR D4572 " --> pdb=" O TYR D4568 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N THR D4581 " --> pdb=" O ALA D4577 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N ILE D4583 " --> pdb=" O LEU D4579 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N ILE D4588 " --> pdb=" O SER D4584 " (cutoff:3.500A) removed outlier: 4.406A pdb=" N VAL D4596 " --> pdb=" O TYR D4592 " (cutoff:3.500A) Proline residue: D4597 - end of helix removed outlier: 3.576A pdb=" N ARG D4603 " --> pdb=" O VAL D4599 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLU D4606 " --> pdb=" O LYS D4602 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N LYS D4610 " --> pdb=" O GLU D4606 " (cutoff:3.500A) Processing helix chain 'D' and resid 4626 through 4639 removed outlier: 3.954A pdb=" N ASP D4632 " --> pdb=" O LYS D4628 " (cutoff:3.500A) removed outlier: 5.611A pdb=" N ARG D4633 " --> pdb=" O GLY D4629 " (cutoff:3.500A) removed outlier: 5.977A pdb=" N LEU D4634 " --> pdb=" O GLN D4630 " (cutoff:3.500A) removed outlier: 5.504A pdb=" N VAL D4635 " --> pdb=" O TRP D4631 " (cutoff:3.500A) removed outlier: 4.648A pdb=" N ILE D4636 " --> pdb=" O ASP D4632 " (cutoff:3.500A) removed outlier: 4.549A pdb=" N ASN D4637 " --> pdb=" O ARG D4633 " (cutoff:3.500A) removed outlier: 4.814A pdb=" N THR D4638 " --> pdb=" O LEU D4634 " (cutoff:3.500A) removed outlier: 5.390A pdb=" N GLN D4639 " --> pdb=" O VAL D4635 " (cutoff:3.500A) Processing helix chain 'D' and resid 4649 through 4659 removed outlier: 3.775A pdb=" N VAL D4654 " --> pdb=" O VAL D4650 " (cutoff:3.500A) Processing helix chain 'D' and resid 4663 through 4672 Processing helix chain 'D' and resid 4696 through 4702 removed outlier: 4.926A pdb=" N ASN D4700 " --> pdb=" O SER D4696 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N SER D4701 " --> pdb=" O ALA D4697 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N ILE D4702 " --> pdb=" O VAL D4698 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4696 through 4702' Processing helix chain 'D' and resid 4703 through 4717 removed outlier: 3.505A pdb=" N TRP D4709 " --> pdb=" O LYS D4705 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N VAL D4714 " --> pdb=" O LYS D4710 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N THR D4716 " --> pdb=" O GLY D4712 " (cutoff:3.500A) removed outlier: 4.096A pdb=" N ASP D4717 " --> pdb=" O VAL D4713 " (cutoff:3.500A) Processing helix chain 'D' and resid 4718 through 4736 removed outlier: 3.715A pdb=" N SER D4730 " --> pdb=" O TYR D4726 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N GLY D4733 " --> pdb=" O MET D4729 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N TYR D4735 " --> pdb=" O VAL D4731 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N ASN D4736 " --> pdb=" O LEU D4732 " (cutoff:3.500A) Processing helix chain 'D' and resid 4737 through 4750 removed outlier: 4.472A pdb=" N ALA D4741 " --> pdb=" O ASN D4737 " (cutoff:3.500A) removed outlier: 5.419A pdb=" N ALA D4742 " --> pdb=" O PHE D4738 " (cutoff:3.500A) removed outlier: 7.340A pdb=" N HIS D4743 " --> pdb=" O PHE D4739 " (cutoff:3.500A) removed outlier: 5.726A pdb=" N LEU D4744 " --> pdb=" O PHE D4740 " (cutoff:3.500A) removed outlier: 5.302A pdb=" N LEU D4745 " --> pdb=" O ALA D4741 " (cutoff:3.500A) removed outlier: 5.638A pdb=" N ASP D4746 " --> pdb=" O ALA D4742 " (cutoff:3.500A) removed outlier: 5.371A pdb=" N ILE D4747 " --> pdb=" O HIS D4743 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N ALA D4748 " --> pdb=" O LEU D4744 " (cutoff:3.500A) removed outlier: 4.416A pdb=" N GLY D4750 " --> pdb=" O ASP D4746 " (cutoff:3.500A) Processing helix chain 'D' and resid 4751 through 4764 removed outlier: 3.972A pdb=" N ILE D4757 " --> pdb=" O THR D4753 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N THR D4762 " --> pdb=" O LEU D4758 " (cutoff:3.500A) Processing helix chain 'D' and resid 4765 through 4789 removed outlier: 3.535A pdb=" N LEU D4770 " --> pdb=" O LYS D4766 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N VAL D4777 " --> pdb=" O GLY D4773 " (cutoff:3.500A) Processing helix chain 'D' and resid 4809 through 4824 removed outlier: 6.586A pdb=" N CYS D4813 " --> pdb=" O ASP D4809 " (cutoff:3.500A) removed outlier: 4.632A pdb=" N TYR D4814 " --> pdb=" O MET D4810 " (cutoff:3.500A) removed outlier: 3.765A pdb=" N PHE D4816 " --> pdb=" O THR D4812 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N TYR D4819 " --> pdb=" O MET D4815 " (cutoff:3.500A) removed outlier: 4.894A pdb=" N VAL D4822 " --> pdb=" O MET D4818 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N ARG D4823 " --> pdb=" O TYR D4819 " (cutoff:3.500A) Processing helix chain 'D' and resid 4840 through 4855 removed outlier: 3.611A pdb=" N ILE D4846 " --> pdb=" O ILE D4842 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N PHE D4852 " --> pdb=" O ASP D4848 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N PHE D4854 " --> pdb=" O THR D4850 " (cutoff:3.500A) Processing helix chain 'D' and resid 4859 through 4884 removed outlier: 3.696A pdb=" N ILE D4863 " --> pdb=" O LEU D4859 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N LEU D4866 " --> pdb=" O ILE D4862 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N ILE D4867 " --> pdb=" O ILE D4863 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N ASP D4869 " --> pdb=" O GLY D4865 " (cutoff:3.500A) removed outlier: 4.081A pdb=" N LEU D4874 " --> pdb=" O ALA D4870 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N ARG D4875 " --> pdb=" O PHE D4871 " (cutoff:3.500A) removed outlier: 4.789A pdb=" N GLN D4878 " --> pdb=" O LEU D4874 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N LYS D4882 " --> pdb=" O GLN D4878 " (cutoff:3.500A) Processing helix chain 'D' and resid 4895 through 4903 removed outlier: 5.368A pdb=" N PHE D4899 " --> pdb=" O GLY D4895 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N ASP D4900 " --> pdb=" O ASN D4896 " (cutoff:3.500A) removed outlier: 5.574A pdb=" N VAL D4902 " --> pdb=" O TYR D4898 " (cutoff:3.500A) Proline residue: D4903 - end of helix Processing helix chain 'D' and resid 4904 through 4911 removed outlier: 4.438A pdb=" N THR D4908 " --> pdb=" O HIS D4904 " (cutoff:3.500A) Processing helix chain 'D' and resid 4915 through 4929 removed outlier: 3.868A pdb=" N TYR D4919 " --> pdb=" O ASN D4915 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ILE D4927 " --> pdb=" O LEU D4923 " (cutoff:3.500A) Processing helix chain 'D' and resid 4935 through 4948 removed outlier: 4.038A pdb=" N TRP D4942 " --> pdb=" O GLU D4938 " (cutoff:3.500A) Processing helix chain 'D' and resid 4958 through 4963 removed outlier: 3.821A pdb=" N GLN D4962 " --> pdb=" O CYS D4958 " (cutoff:3.500A) Processing helix chain 'D' and resid 54 through 59 Proline residue: D 59 - end of helix No H-bonds generated for 'chain 'D' and resid 54 through 59' Processing helix chain 'D' and resid 4615 through 4620 Processing helix chain 'G' and resid 61 through 66 removed outlier: 4.104A pdb=" N CYS G 65 " --> pdb=" O ASP G 61 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N THR G 66 " --> pdb=" O LEU G 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 61 through 66' Processing helix chain 'G' and resid 74 through 84 removed outlier: 3.555A pdb=" N ALA G 83 " --> pdb=" O GLN G 79 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N ASN G 84 " --> pdb=" O GLU G 80 " (cutoff:3.500A) Processing helix chain 'G' and resid 266 through 271 removed outlier: 4.334A pdb=" N ALA G 271 " --> pdb=" O VAL G 267 " (cutoff:3.500A) Processing helix chain 'G' and resid 318 through 323 removed outlier: 4.321A pdb=" N ALA G 322 " --> pdb=" O ASP G 318 " (cutoff:3.500A) removed outlier: 6.077A pdb=" N ASP G 323 " --> pdb=" O LYS G 319 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 318 through 323' Processing helix chain 'G' and resid 409 through 439 removed outlier: 3.583A pdb=" N ALA G 416 " --> pdb=" O GLU G 412 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N ARG G 417 " --> pdb=" O SER G 413 " (cutoff:3.500A) removed outlier: 4.493A pdb=" N ARG G 428 " --> pdb=" O PHE G 424 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ALA G 435 " --> pdb=" O ARG G 431 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N LEU G 436 " --> pdb=" O GLY G 432 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N LYS G 438 " --> pdb=" O ASP G 434 " (cutoff:3.500A) removed outlier: 4.773A pdb=" N LYS G 439 " --> pdb=" O ALA G 435 " (cutoff:3.500A) Processing helix chain 'G' and resid 449 through 464 removed outlier: 4.281A pdb=" N GLY G 461 " --> pdb=" O GLN G 457 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N TYR G 462 " --> pdb=" O ASP G 458 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N PHE G 463 " --> pdb=" O LEU G 459 " (cutoff:3.500A) Processing helix chain 'G' and resid 471 through 493 removed outlier: 3.637A pdb=" N GLN G 476 " --> pdb=" O HIS G 472 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ASN G 487 " --> pdb=" O LYS G 483 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N PHE G 489 " --> pdb=" O ARG G 485 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N GLU G 492 " --> pdb=" O LEU G 488 " (cutoff:3.500A) Processing helix chain 'G' and resid 494 through 507 removed outlier: 3.794A pdb=" N CYS G 501 " --> pdb=" O LEU G 497 " (cutoff:3.500A) removed outlier: 4.480A pdb=" N VAL G 507 " --> pdb=" O ASP G 503 " (cutoff:3.500A) Processing helix chain 'G' and resid 519 through 542 removed outlier: 4.013A pdb=" N GLU G 524 " --> pdb=" O ARG G 520 " (cutoff:3.500A) removed outlier: 5.312A pdb=" N SER G 525 " --> pdb=" O GLU G 521 " (cutoff:3.500A) removed outlier: 6.260A pdb=" N TRP G 526 " --> pdb=" O ALA G 522 " (cutoff:3.500A) removed outlier: 6.089A pdb=" N LYS G 527 " --> pdb=" O GLY G 523 " (cutoff:3.500A) removed outlier: 6.087A pdb=" N SER G 528 " --> pdb=" O GLU G 524 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLU G 535 " --> pdb=" O ASN G 531 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N ALA G 539 " --> pdb=" O GLU G 535 " (cutoff:3.500A) removed outlier: 4.066A pdb=" N ILE G 541 " --> pdb=" O LEU G 537 " (cutoff:3.500A) Processing helix chain 'G' and resid 544 through 552 removed outlier: 3.730A pdb=" N GLN G 550 " --> pdb=" O LYS G 546 " (cutoff:3.500A) Processing helix chain 'G' and resid 554 through 563 removed outlier: 3.737A pdb=" N SER G 560 " --> pdb=" O ASP G 556 " (cutoff:3.500A) removed outlier: 4.711A pdb=" N GLU G 563 " --> pdb=" O ILE G 559 " (cutoff:3.500A) Processing helix chain 'G' and resid 567 through 582 removed outlier: 3.638A pdb=" N LEU G 575 " --> pdb=" O ILE G 571 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N SER G 582 " --> pdb=" O VAL G 578 " (cutoff:3.500A) Processing helix chain 'G' and resid 583 through 590 removed outlier: 4.162A pdb=" N ASN G 587 " --> pdb=" O PRO G 583 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N ILE G 588 " --> pdb=" O GLU G 584 " (cutoff:3.500A) removed outlier: 5.850A pdb=" N LYS G 590 " --> pdb=" O LEU G 586 " (cutoff:3.500A) Processing helix chain 'G' and resid 591 through 605 removed outlier: 3.808A pdb=" N GLY G 605 " --> pdb=" O LEU G 601 " (cutoff:3.500A) Processing helix chain 'G' and resid 607 through 620 removed outlier: 3.675A pdb=" N VAL G 619 " --> pdb=" O CYS G 615 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N CYS G 620 " --> pdb=" O SER G 616 " (cutoff:3.500A) Processing helix chain 'G' and resid 625 through 640 removed outlier: 3.811A pdb=" N GLN G 629 " --> pdb=" O VAL G 625 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N LEU G 631 " --> pdb=" O SER G 627 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N ASN G 635 " --> pdb=" O LEU G 631 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N LEU G 637 " --> pdb=" O CYS G 633 " (cutoff:3.500A) Proline residue: G 638 - end of helix Processing helix chain 'G' and resid 821 through 827 removed outlier: 3.832A pdb=" N ALA G 825 " --> pdb=" O PRO G 821 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N VAL G 826 " --> pdb=" O CYS G 822 " (cutoff:3.500A) removed outlier: 4.926A pdb=" N LEU G 827 " --> pdb=" O TYR G 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 821 through 827' Processing helix chain 'G' and resid 875 through 901 removed outlier: 4.060A pdb=" N GLU G 879 " --> pdb=" O PRO G 875 " (cutoff:3.500A) removed outlier: 5.532A pdb=" N ARG G 880 " --> pdb=" O PRO G 876 " (cutoff:3.500A) removed outlier: 4.629A pdb=" N ILE G 881 " --> pdb=" O HIS G 877 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N LEU G 892 " --> pdb=" O ASN G 888 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N LYS G 897 " --> pdb=" O TRP G 893 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N LEU G 900 " --> pdb=" O ASN G 896 " (cutoff:3.500A) removed outlier: 4.992A pdb=" N GLY G 901 " --> pdb=" O LYS G 897 " (cutoff:3.500A) Processing helix chain 'G' and resid 925 through 930 removed outlier: 4.633A pdb=" N ASN G 930 " --> pdb=" O GLU G 926 " (cutoff:3.500A) Processing helix chain 'G' and resid 931 through 946 removed outlier: 3.662A pdb=" N LEU G 937 " --> pdb=" O LEU G 933 " (cutoff:3.500A) removed outlier: 4.126A pdb=" N GLU G 938 " --> pdb=" O GLN G 934 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N LEU G 943 " --> pdb=" O THR G 939 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N ALA G 945 " --> pdb=" O LYS G 941 " (cutoff:3.500A) Processing helix chain 'G' and resid 982 through 987 removed outlier: 3.954A pdb=" N ILE G 986 " --> pdb=" O ASP G 982 " (cutoff:3.500A) removed outlier: 5.257A pdb=" N LYS G 987 " --> pdb=" O LEU G 983 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 982 through 987' Processing helix chain 'G' and resid 989 through 1012 removed outlier: 3.727A pdb=" N MET G 995 " --> pdb=" O SER G 991 " (cutoff:3.500A) Processing helix chain 'G' and resid 1042 through 1061 removed outlier: 4.027A pdb=" N ASN G1046 " --> pdb=" O THR G1042 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N SER G1049 " --> pdb=" O SER G1045 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N LEU G1057 " --> pdb=" O ALA G1053 " (cutoff:3.500A) Processing helix chain 'G' and resid 1226 through 1231 removed outlier: 4.117A pdb=" N GLY G1231 " --> pdb=" O PHE G1227 " (cutoff:3.500A) Processing helix chain 'G' and resid 1571 through 1577 removed outlier: 4.524A pdb=" N HIS G1575 " --> pdb=" O PHE G1571 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N LYS G1576 " --> pdb=" O LYS G1572 " (cutoff:3.500A) removed outlier: 5.252A pdb=" N ASN G1577 " --> pdb=" O SER G1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1571 through 1577' Processing helix chain 'G' and resid 1643 through 1648 removed outlier: 4.364A pdb=" N GLN G1647 " --> pdb=" O GLU G1643 " (cutoff:3.500A) removed outlier: 4.400A pdb=" N GLU G1648 " --> pdb=" O LEU G1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1643 through 1648' Processing helix chain 'G' and resid 1649 through 1666 removed outlier: 4.179A pdb=" N PHE G1653 " --> pdb=" O GLU G1649 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N CYS G1665 " --> pdb=" O TYR G1661 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N ALA G1666 " --> pdb=" O SER G1662 " (cutoff:3.500A) Processing helix chain 'G' and resid 1669 through 1681 removed outlier: 3.582A pdb=" N SER G1678 " --> pdb=" O HIS G1674 " (cutoff:3.500A) removed outlier: 3.727A pdb=" N HIS G1679 " --> pdb=" O ALA G1675 " (cutoff:3.500A) Processing helix chain 'G' and resid 1682 through 1691 removed outlier: 3.565A pdb=" N TYR G1687 " --> pdb=" O PRO G1683 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N GLU G1690 " --> pdb=" O LEU G1686 " (cutoff:3.500A) Processing helix chain 'G' and resid 1695 through 1710 removed outlier: 3.552A pdb=" N TYR G1702 " --> pdb=" O LEU G1698 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N ILE G1707 " --> pdb=" O TYR G1703 " (cutoff:3.500A) Processing helix chain 'G' and resid 1711 through 1722 removed outlier: 4.606A pdb=" N ALA G1715 " --> pdb=" O LEU G1711 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N ALA G1717 " --> pdb=" O SER G1713 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N MET G1721 " --> pdb=" O ALA G1717 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N ASN G1722 " --> pdb=" O ARG G1718 " (cutoff:3.500A) Processing helix chain 'G' and resid 1730 through 1736 removed outlier: 3.797A pdb=" N LYS G1734 " --> pdb=" O THR G1730 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N SER G1735 " --> pdb=" O GLU G1731 " (cutoff:3.500A) removed outlier: 4.916A pdb=" N ILE G1736 " --> pdb=" O GLU G1732 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1730 through 1736' Processing helix chain 'G' and resid 1771 through 1776 removed outlier: 4.559A pdb=" N CYS G1775 " --> pdb=" O ILE G1771 " (cutoff:3.500A) removed outlier: 5.454A pdb=" N TYR G1776 " --> pdb=" O ASN G1772 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1771 through 1776' Processing helix chain 'G' and resid 1783 through 1805 removed outlier: 4.095A pdb=" N LEU G1787 " --> pdb=" O PRO G1783 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ILE G1792 " --> pdb=" O LYS G1788 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N GLU G1801 " --> pdb=" O GLU G1797 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N LEU G1804 " --> pdb=" O GLN G1800 " (cutoff:3.500A) Processing helix chain 'G' and resid 1813 through 1832 removed outlier: 3.503A pdb=" N LEU G1817 " --> pdb=" O THR G1813 " (cutoff:3.500A) Proline residue: G1820 - end of helix removed outlier: 3.557A pdb=" N MET G1831 " --> pdb=" O THR G1827 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N GLY G1832 " --> pdb=" O LEU G1828 " (cutoff:3.500A) Processing helix chain 'G' and resid 1835 through 1847 removed outlier: 3.765A pdb=" N LYS G1840 " --> pdb=" O ASN G1836 " (cutoff:3.500A) Processing helix chain 'G' and resid 1901 through 1938 removed outlier: 4.224A pdb=" N GLN G1906 " --> pdb=" O PRO G1902 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N TYR G1913 " --> pdb=" O LEU G1909 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N LEU G1914 " --> pdb=" O LEU G1910 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N CYS G1915 " --> pdb=" O LEU G1911 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ALA G1928 " --> pdb=" O GLU G1924 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N SER G1930 " --> pdb=" O ILE G1926 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N ASP G1932 " --> pdb=" O ALA G1928 " (cutoff:3.500A) Processing helix chain 'G' and resid 1940 through 1953 removed outlier: 3.506A pdb=" N GLN G1950 " --> pdb=" O ASN G1946 " (cutoff:3.500A) removed outlier: 3.773A pdb=" N ASN G1953 " --> pdb=" O MET G1949 " (cutoff:3.500A) Processing helix chain 'G' and resid 1990 through 1998 removed outlier: 5.321A pdb=" N ARG G1994 " --> pdb=" O PRO G1990 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N GLN G1996 " --> pdb=" O GLU G1992 " (cutoff:3.500A) removed outlier: 4.709A pdb=" N LEU G1998 " --> pdb=" O ARG G1994 " (cutoff:3.500A) Processing helix chain 'G' and resid 1999 through 2008 Processing helix chain 'G' and resid 2026 through 2039 removed outlier: 3.884A pdb=" N LEU G2030 " --> pdb=" O ILE G2026 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N LEU G2031 " --> pdb=" O ARG G2027 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N VAL G2034 " --> pdb=" O LEU G2030 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N GLU G2035 " --> pdb=" O LEU G2031 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N LYS G2036 " --> pdb=" O SER G2032 " (cutoff:3.500A) removed outlier: 4.686A pdb=" N TYR G2039 " --> pdb=" O GLU G2035 " (cutoff:3.500A) Processing helix chain 'G' and resid 2058 through 2074 removed outlier: 4.206A pdb=" N LEU G2062 " --> pdb=" O THR G2058 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N VAL G2068 " --> pdb=" O SER G2064 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N GLU G2073 " --> pdb=" O ARG G2069 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N SER G2074 " --> pdb=" O TRP G2070 " (cutoff:3.500A) Processing helix chain 'G' and resid 2078 through 2095 removed outlier: 3.701A pdb=" N ALA G2084 " --> pdb=" O GLU G2080 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N VAL G2087 " --> pdb=" O ARG G2083 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N LEU G2088 " --> pdb=" O ALA G2084 " (cutoff:3.500A) Processing helix chain 'G' and resid 2096 through 2106 Proline residue: G2104 - end of helix Processing helix chain 'G' and resid 2110 through 2132 removed outlier: 3.979A pdb=" N VAL G2114 " --> pdb=" O ASN G2110 " (cutoff:3.500A) removed outlier: 5.157A pdb=" N GLU G2115 " --> pdb=" O GLY G2111 " (cutoff:3.500A) removed outlier: 5.064A pdb=" N ASP G2116 " --> pdb=" O VAL G2112 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N ILE G2118 " --> pdb=" O VAL G2114 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N ASN G2119 " --> pdb=" O GLU G2115 " (cutoff:3.500A) removed outlier: 4.741A pdb=" N SER G2132 " --> pdb=" O ARG G2128 " (cutoff:3.500A) Processing helix chain 'G' and resid 2138 through 2153 removed outlier: 3.592A pdb=" N LEU G2142 " --> pdb=" O GLU G2138 " (cutoff:3.500A) removed outlier: 3.926A pdb=" N MET G2143 " --> pdb=" O GLU G2139 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N ASP G2149 " --> pdb=" O ARG G2145 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N ILE G2150 " --> pdb=" O GLY G2146 " (cutoff:3.500A) removed outlier: 4.447A pdb=" N ASN G2153 " --> pdb=" O ASP G2149 " (cutoff:3.500A) Processing helix chain 'G' and resid 2154 through 2160 removed outlier: 3.718A pdb=" N GLN G2158 " --> pdb=" O LYS G2154 " (cutoff:3.500A) removed outlier: 6.103A pdb=" N HIS G2159 " --> pdb=" O VAL G2155 " (cutoff:3.500A) Proline residue: G2160 - end of helix No H-bonds generated for 'chain 'G' and resid 2154 through 2160' Processing helix chain 'G' and resid 2161 through 2167 removed outlier: 3.648A pdb=" N GLY G2167 " --> pdb=" O MET G2163 " (cutoff:3.500A) Processing helix chain 'G' and resid 2168 through 2181 removed outlier: 3.790A pdb=" N VAL G2172 " --> pdb=" O MET G2168 " (cutoff:3.500A) removed outlier: 5.379A pdb=" N GLY G2181 " --> pdb=" O VAL G2177 " (cutoff:3.500A) Processing helix chain 'G' and resid 2191 through 2209 removed outlier: 3.938A pdb=" N CYS G2197 " --> pdb=" O MET G2193 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N PHE G2200 " --> pdb=" O ASN G2196 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ARG G2206 " --> pdb=" O CYS G2202 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N ILE G2207 " --> pdb=" O TYR G2203 " (cutoff:3.500A) removed outlier: 5.040A pdb=" N SER G2208 " --> pdb=" O PHE G2204 " (cutoff:3.500A) removed outlier: 5.322A pdb=" N ARG G2209 " --> pdb=" O CYS G2205 " (cutoff:3.500A) Processing helix chain 'G' and resid 2210 through 2217 removed outlier: 3.895A pdb=" N ALA G2214 " --> pdb=" O GLN G2210 " (cutoff:3.500A) removed outlier: 4.157A pdb=" N ASP G2217 " --> pdb=" O LYS G2213 " (cutoff:3.500A) Processing helix chain 'G' and resid 2218 through 2225 removed outlier: 4.410A pdb=" N GLU G2224 " --> pdb=" O SER G2220 " (cutoff:3.500A) removed outlier: 4.775A pdb=" N ASN G2225 " --> pdb=" O TYR G2221 " (cutoff:3.500A) Processing helix chain 'G' and resid 2232 through 2239 removed outlier: 4.610A pdb=" N ARG G2236 " --> pdb=" O SER G2232 " (cutoff:3.500A) removed outlier: 8.634A pdb=" N GLY G2237 " --> pdb=" O PRO G2233 " (cutoff:3.500A) removed outlier: 5.162A pdb=" N SER G2238 " --> pdb=" O ALA G2234 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N THR G2239 " --> pdb=" O MET G2235 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 2232 through 2239' Processing helix chain 'G' and resid 2240 through 2249 removed outlier: 3.772A pdb=" N VAL G2248 " --> pdb=" O ALA G2244 " (cutoff:3.500A) Processing helix chain 'G' and resid 2251 through 2258 removed outlier: 3.759A pdb=" N LEU G2258 " --> pdb=" O LEU G2254 " (cutoff:3.500A) Processing helix chain 'G' and resid 2259 through 2274 removed outlier: 3.806A pdb=" N LEU G2263 " --> pdb=" O ARG G2259 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N VAL G2266 " --> pdb=" O ASP G2262 " (cutoff:3.500A) removed outlier: 5.325A pdb=" N GLY G2274 " --> pdb=" O LEU G2270 " (cutoff:3.500A) Processing helix chain 'G' and resid 2293 through 2308 removed outlier: 5.256A pdb=" N GLU G2297 " --> pdb=" O PRO G2293 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N ARG G2298 " --> pdb=" O VAL G2294 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N TYR G2299 " --> pdb=" O GLU G2295 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N LEU G2300 " --> pdb=" O GLY G2296 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N ARG G2304 " --> pdb=" O LEU G2300 " (cutoff:3.500A) removed outlier: 4.061A pdb=" N PHE G2305 " --> pdb=" O ASP G2301 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N ALA G2306 " --> pdb=" O PHE G2302 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N PHE G2308 " --> pdb=" O ARG G2304 " (cutoff:3.500A) Processing helix chain 'G' and resid 2314 through 2329 removed outlier: 4.537A pdb=" N ALA G2318 " --> pdb=" O VAL G2314 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N ASN G2319 " --> pdb=" O GLU G2315 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N VAL G2322 " --> pdb=" O ALA G2318 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N ARG G2327 " --> pdb=" O ARG G2323 " (cutoff:3.500A) removed outlier: 4.557A pdb=" N ARG G2328 " --> pdb=" O LEU G2324 " (cutoff:3.500A) Proline residue: G2329 - end of helix Processing helix chain 'G' and resid 2343 through 2355 removed outlier: 3.584A pdb=" N GLU G2349 " --> pdb=" O LEU G2345 " (cutoff:3.500A) removed outlier: 4.353A pdb=" N GLU G2350 " --> pdb=" O ALA G2346 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N ALA G2351 " --> pdb=" O ALA G2347 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N ILE G2352 " --> pdb=" O MET G2348 " (cutoff:3.500A) removed outlier: 4.465A pdb=" N LYS G2353 " --> pdb=" O GLU G2349 " (cutoff:3.500A) removed outlier: 4.323A pdb=" N ILE G2354 " --> pdb=" O GLU G2350 " (cutoff:3.500A) removed outlier: 5.843A pdb=" N ALA G2355 " --> pdb=" O ALA G2351 " (cutoff:3.500A) Processing helix chain 'G' and resid 2386 through 2404 removed outlier: 3.645A pdb=" N MET G2390 " --> pdb=" O GLY G2386 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N ALA G2394 " --> pdb=" O MET G2390 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N ILE G2397 " --> pdb=" O TYR G2393 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N ARG G2402 " --> pdb=" O ASP G2398 " (cutoff:3.500A) removed outlier: 4.271A pdb=" N ALA G2404 " --> pdb=" O LEU G2400 " (cutoff:3.500A) Processing helix chain 'G' and resid 2408 through 2413 removed outlier: 4.118A pdb=" N ALA G2412 " --> pdb=" O HIS G2408 " (cutoff:3.500A) Processing helix chain 'G' and resid 2414 through 2429 removed outlier: 4.798A pdb=" N ILE G2418 " --> pdb=" O LYS G2414 " (cutoff:3.500A) removed outlier: 6.351A pdb=" N ARG G2419 " --> pdb=" O GLY G2415 " (cutoff:3.500A) removed outlier: 4.796A pdb=" N ILE G2420 " --> pdb=" O GLU G2416 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N ARG G2421 " --> pdb=" O ALA G2417 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N ILE G2423 " --> pdb=" O ARG G2419 " (cutoff:3.500A) removed outlier: 3.976A pdb=" N ILE G2428 " --> pdb=" O LEU G2424 " (cutoff:3.500A) Proline residue: G2429 - end of helix Processing helix chain 'G' and resid 2432 through 2437 Processing helix chain 'G' and resid 2462 through 2477 removed outlier: 3.692A pdb=" N LYS G2466 " --> pdb=" O CYS G2462 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ALA G2467 " --> pdb=" O PRO G2463 " (cutoff:3.500A) removed outlier: 3.836A pdb=" N ALA G2468 " --> pdb=" O ASP G2464 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N PHE G2472 " --> pdb=" O ALA G2468 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ARG G2475 " --> pdb=" O LEU G2471 " (cutoff:3.500A) Processing helix chain 'G' and resid 2481 through 2489 removed outlier: 4.134A pdb=" N LEU G2485 " --> pdb=" O VAL G2481 " (cutoff:3.500A) removed outlier: 4.012A pdb=" N LEU G2486 " --> pdb=" O GLN G2482 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N LEU G2489 " --> pdb=" O LEU G2485 " (cutoff:3.500A) Processing helix chain 'G' and resid 2494 through 2500 removed outlier: 4.527A pdb=" N ARG G2498 " --> pdb=" O LEU G2494 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N ALA G2499 " --> pdb=" O PRO G2495 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N ALA G2500 " --> pdb=" O ASP G2496 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 2494 through 2500' Processing helix chain 'G' and resid 2514 through 2528 removed outlier: 4.348A pdb=" N ASN G2518 " --> pdb=" O ALA G2514 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N ARG G2519 " --> pdb=" O LEU G2515 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N LEU G2521 " --> pdb=" O LEU G2517 " (cutoff:3.500A) removed outlier: 4.807A pdb=" N CYS G2522 " --> pdb=" O ASN G2518 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N THR G2523 " --> pdb=" O ARG G2519 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N VAL G2525 " --> pdb=" O LEU G2521 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N LEU G2526 " --> pdb=" O CYS G2522 " (cutoff:3.500A) Proline residue: G2527 - end of helix Processing helix chain 'G' and resid 2536 through 2553 removed outlier: 4.792A pdb=" N GLU G2540 " --> pdb=" O PHE G2536 " (cutoff:3.500A) Processing helix chain 'G' and resid 2558 through 2576 removed outlier: 3.880A pdb=" N GLU G2571 " --> pdb=" O ARG G2567 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N VAL G2572 " --> pdb=" O ASP G2568 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N CYS G2573 " --> pdb=" O SER G2569 " (cutoff:3.500A) removed outlier: 3.982A pdb=" N LEU G2574 " --> pdb=" O ILE G2570 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N SER G2576 " --> pdb=" O VAL G2572 " (cutoff:3.500A) Processing helix chain 'G' and resid 2582 through 2601 removed outlier: 4.073A pdb=" N MET G2586 " --> pdb=" O ARG G2582 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ARG G2592 " --> pdb=" O HIS G2588 " (cutoff:3.500A) Proline residue: G2598 - end of helix Processing helix chain 'G' and resid 2605 through 2625 removed outlier: 3.773A pdb=" N LEU G2611 " --> pdb=" O PRO G2607 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ASN G2613 " --> pdb=" O LYS G2609 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N HIS G2614 " --> pdb=" O LEU G2610 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N TYR G2615 " --> pdb=" O LEU G2611 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N ARG G2617 " --> pdb=" O ASN G2613 " (cutoff:3.500A) Proline residue: G2625 - end of helix Processing helix chain 'G' and resid 2635 through 2653 removed outlier: 4.144A pdb=" N ALA G2652 " --> pdb=" O GLY G2648 " (cutoff:3.500A) removed outlier: 4.776A pdb=" N LEU G2653 " --> pdb=" O ILE G2649 " (cutoff:3.500A) Processing helix chain 'G' and resid 2659 through 2677 removed outlier: 3.802A pdb=" N PHE G2663 " --> pdb=" O GLU G2659 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N LEU G2665 " --> pdb=" O GLU G2661 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ALA G2666 " --> pdb=" O LEU G2662 " (cutoff:3.500A) Proline residue: G2668 - end of helix Processing helix chain 'G' and resid 2719 through 2739 removed outlier: 4.708A pdb=" N ASN G2723 " --> pdb=" O GLU G2719 " (cutoff:3.500A) removed outlier: 5.044A pdb=" N LYS G2724 " --> pdb=" O TYR G2720 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N ASP G2736 " --> pdb=" O LYS G2732 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N LYS G2737 " --> pdb=" O TRP G2733 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N ALA G2739 " --> pdb=" O MET G2735 " (cutoff:3.500A) Processing helix chain 'G' and resid 2765 through 2774 removed outlier: 4.110A pdb=" N LYS G2769 " --> pdb=" O SER G2765 " (cutoff:3.500A) removed outlier: 5.385A pdb=" N GLU G2770 " --> pdb=" O GLU G2766 " (cutoff:3.500A) removed outlier: 6.653A pdb=" N ILE G2771 " --> pdb=" O LYS G2767 " (cutoff:3.500A) removed outlier: 6.093A pdb=" N TYR G2772 " --> pdb=" O GLU G2768 " (cutoff:3.500A) removed outlier: 4.304A pdb=" N TRP G2774 " --> pdb=" O GLU G2770 " (cutoff:3.500A) Processing helix chain 'G' and resid 2775 through 2787 removed outlier: 3.900A pdb=" N SER G2779 " --> pdb=" O PRO G2775 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N LYS G2781 " --> pdb=" O LYS G2777 " (cutoff:3.500A) removed outlier: 5.034A pdb=" N THR G2782 " --> pdb=" O GLU G2778 " (cutoff:3.500A) removed outlier: 4.225A pdb=" N TRP G2786 " --> pdb=" O THR G2782 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N GLY G2787 " --> pdb=" O MET G2783 " (cutoff:3.500A) Processing helix chain 'G' and resid 2835 through 2863 removed outlier: 3.718A pdb=" N MET G2841 " --> pdb=" O ASP G2837 " (cutoff:3.500A) removed outlier: 3.911A pdb=" N MET G2844 " --> pdb=" O ALA G2840 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ASN G2848 " --> pdb=" O MET G2844 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N HIS G2850 " --> pdb=" O ALA G2846 " (cutoff:3.500A) removed outlier: 3.825A pdb=" N ASN G2851 " --> pdb=" O GLU G2847 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N TRP G2853 " --> pdb=" O TYR G2849 " (cutoff:3.500A) removed outlier: 5.124A pdb=" N SER G2863 " --> pdb=" O LEU G2859 " (cutoff:3.500A) Processing helix chain 'G' and resid 2881 through 2894 removed outlier: 3.514A pdb=" N ASP G2886 " --> pdb=" O GLU G2882 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N GLU G2888 " --> pdb=" O ALA G2884 " (cutoff:3.500A) removed outlier: 4.497A pdb=" N LYS G2889 " --> pdb=" O LYS G2885 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N ALA G2890 " --> pdb=" O ASP G2886 " (cutoff:3.500A) removed outlier: 4.436A pdb=" N ILE G2893 " --> pdb=" O LYS G2889 " (cutoff:3.500A) removed outlier: 4.722A pdb=" N LEU G2894 " --> pdb=" O ALA G2890 " (cutoff:3.500A) Processing helix chain 'G' and resid 2987 through 3004 removed outlier: 4.664A pdb=" N LEU G2991 " --> pdb=" O ALA G2987 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N LYS G3000 " --> pdb=" O HIS G2996 " (cutoff:3.500A) removed outlier: 4.100A pdb=" N GLU G3003 " --> pdb=" O ASN G2999 " (cutoff:3.500A) removed outlier: 4.375A pdb=" N MET G3004 " --> pdb=" O LYS G3000 " (cutoff:3.500A) Processing helix chain 'G' and resid 3011 through 3028 removed outlier: 4.278A pdb=" N ALA G3027 " --> pdb=" O PHE G3023 " (cutoff:3.500A) removed outlier: 4.029A pdb=" N THR G3028 " --> pdb=" O GLY G3024 " (cutoff:3.500A) Processing helix chain 'G' and resid 3035 through 3052 removed outlier: 3.934A pdb=" N GLU G3052 " --> pdb=" O LYS G3048 " (cutoff:3.500A) Processing helix chain 'G' and resid 3062 through 3082 removed outlier: 4.250A pdb=" N ALA G3066 " --> pdb=" O LEU G3062 " (cutoff:3.500A) removed outlier: 4.595A pdb=" N GLU G3067 " --> pdb=" O ASP G3063 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N ASP G3068 " --> pdb=" O ASN G3064 " (cutoff:3.500A) removed outlier: 5.210A pdb=" N LEU G3069 " --> pdb=" O ALA G3065 " (cutoff:3.500A) removed outlier: 5.584A pdb=" N GLU G3070 " --> pdb=" O ALA G3066 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N MET G3073 " --> pdb=" O LEU G3069 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N GLN G3080 " --> pdb=" O LEU G3076 " (cutoff:3.500A) removed outlier: 4.118A pdb=" N PHE G3081 " --> pdb=" O LYS G3077 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N THR G3082 " --> pdb=" O GLN G3078 " (cutoff:3.500A) Processing helix chain 'G' and resid 3100 through 3117 Proline residue: G3104 - end of helix removed outlier: 3.579A pdb=" N SER G3107 " --> pdb=" O LEU G3103 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N HIS G3112 " --> pdb=" O SER G3108 " (cutoff:3.500A) removed outlier: 5.097A pdb=" N GLN G3117 " --> pdb=" O ILE G3113 " (cutoff:3.500A) Processing helix chain 'G' and resid 3125 through 3142 removed outlier: 3.896A pdb=" N SER G3137 " --> pdb=" O ARG G3133 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ALA G3140 " --> pdb=" O THR G3136 " (cutoff:3.500A) removed outlier: 4.369A pdb=" N GLY G3142 " --> pdb=" O LEU G3138 " (cutoff:3.500A) Processing helix chain 'G' and resid 3152 through 3163 removed outlier: 3.634A pdb=" N LEU G3160 " --> pdb=" O LEU G3156 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N ALA G3161 " --> pdb=" O GLY G3157 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ALA G3162 " --> pdb=" O GLU G3158 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N PHE G3163 " --> pdb=" O CYS G3159 " (cutoff:3.500A) Processing helix chain 'G' and resid 3172 through 3182 removed outlier: 4.218A pdb=" N HIS G3179 " --> pdb=" O HIS G3175 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N ASN G3180 " --> pdb=" O LEU G3176 " (cutoff:3.500A) Processing helix chain 'G' and resid 3585 through 3607 removed outlier: 3.942A pdb=" N LEU G3592 " --> pdb=" O TRP G3588 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N SER G3593 " --> pdb=" O HIS G3589 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N LYS G3594 " --> pdb=" O LYS G3590 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N VAL G3601 " --> pdb=" O LYS G3597 " (cutoff:3.500A) removed outlier: 3.916A pdb=" N ALA G3607 " --> pdb=" O CYS G3603 " (cutoff:3.500A) Processing helix chain 'G' and resid 3613 through 3629 removed outlier: 3.780A pdb=" N GLN G3623 " --> pdb=" O ASN G3619 " (cutoff:3.500A) Processing helix chain 'G' and resid 3636 through 3647 removed outlier: 4.064A pdb=" N LYS G3640 " --> pdb=" O TYR G3636 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N GLU G3643 " --> pdb=" O ASP G3639 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N LYS G3647 " --> pdb=" O GLU G3643 " (cutoff:3.500A) Processing helix chain 'G' and resid 3663 through 3678 removed outlier: 3.589A pdb=" N LEU G3668 " --> pdb=" O PRO G3664 " (cutoff:3.500A) removed outlier: 4.424A pdb=" N THR G3678 " --> pdb=" O ARG G3674 " (cutoff:3.500A) Processing helix chain 'G' and resid 3686 through 3700 removed outlier: 4.132A pdb=" N ASP G3694 " --> pdb=" O MET G3690 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N ALA G3697 " --> pdb=" O ALA G3693 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N SER G3699 " --> pdb=" O ILE G3695 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N CYS G3700 " --> pdb=" O MET G3696 " (cutoff:3.500A) Processing helix chain 'G' and resid 3714 through 3734 removed outlier: 4.117A pdb=" N LYS G3718 " --> pdb=" O SER G3714 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N LYS G3722 " --> pdb=" O LYS G3718 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N LEU G3732 " --> pdb=" O GLN G3728 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ASP G3734 " --> pdb=" O ALA G3730 " (cutoff:3.500A) Processing helix chain 'G' and resid 3736 through 3749 removed outlier: 3.559A pdb=" N MET G3740 " --> pdb=" O GLY G3736 " (cutoff:3.500A) removed outlier: 4.119A pdb=" N VAL G3741 " --> pdb=" O ALA G3737 " (cutoff:3.500A) removed outlier: 4.133A pdb=" N LEU G3742 " --> pdb=" O ALA G3738 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N ILE G3745 " --> pdb=" O VAL G3741 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N SER G3746 " --> pdb=" O LEU G3742 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N SER G3748 " --> pdb=" O THR G3744 " (cutoff:3.500A) removed outlier: 4.874A pdb=" N LYS G3749 " --> pdb=" O ILE G3745 " (cutoff:3.500A) Processing helix chain 'G' and resid 3753 through 3768 removed outlier: 3.723A pdb=" N LYS G3761 " --> pdb=" O ALA G3757 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N ALA G3765 " --> pdb=" O LYS G3761 " (cutoff:3.500A) Processing helix chain 'G' and resid 3771 through 3786 removed outlier: 3.768A pdb=" N LEU G3779 " --> pdb=" O GLN G3775 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N GLU G3784 " --> pdb=" O GLU G3780 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N LYS G3786 " --> pdb=" O LEU G3782 " (cutoff:3.500A) Processing helix chain 'G' and resid 3787 through 3801 removed outlier: 4.766A pdb=" N PHE G3791 " --> pdb=" O ASP G3787 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N SER G3793 " --> pdb=" O GLY G3789 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N GLY G3796 " --> pdb=" O GLN G3792 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N SER G3800 " --> pdb=" O GLY G3796 " (cutoff:3.500A) removed outlier: 3.989A pdb=" N CYS G3801 " --> pdb=" O LEU G3797 " (cutoff:3.500A) Processing helix chain 'G' and resid 3805 through 3819 removed outlier: 3.911A pdb=" N PHE G3809 " --> pdb=" O ASP G3805 " (cutoff:3.500A) Processing helix chain 'G' and resid 3833 through 3849 removed outlier: 3.642A pdb=" N THR G3837 " --> pdb=" O ASP G3833 " (cutoff:3.500A) removed outlier: 3.911A pdb=" N PHE G3841 " --> pdb=" O THR G3837 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N PHE G3843 " --> pdb=" O ASP G3839 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N LEU G3847 " --> pdb=" O PHE G3843 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N CYS G3848 " --> pdb=" O LEU G3844 " (cutoff:3.500A) Processing helix chain 'G' and resid 3852 through 3861 removed outlier: 3.544A pdb=" N ASN G3857 " --> pdb=" O SER G3853 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N TYR G3858 " --> pdb=" O ASP G3854 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N ARG G3860 " --> pdb=" O GLN G3856 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N THR G3861 " --> pdb=" O ASN G3857 " (cutoff:3.500A) Processing helix chain 'G' and resid 3870 through 3894 removed outlier: 3.543A pdb=" N VAL G3876 " --> pdb=" O ILE G3872 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N TYR G3878 " --> pdb=" O SER G3874 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N LEU G3879 " --> pdb=" O THR G3875 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N ARG G3881 " --> pdb=" O ASP G3877 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N SER G3885 " --> pdb=" O ARG G3881 " (cutoff:3.500A) removed outlier: 3.960A pdb=" N TYR G3893 " --> pdb=" O PHE G3889 " (cutoff:3.500A) Processing helix chain 'G' and resid 3900 through 3926 removed outlier: 3.525A pdb=" N PHE G3907 " --> pdb=" O GLY G3903 " (cutoff:3.500A) removed outlier: 4.020A pdb=" N LYS G3909 " --> pdb=" O ARG G3905 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N ALA G3910 " --> pdb=" O ASN G3906 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N GLN G3912 " --> pdb=" O SER G3908 " (cutoff:3.500A) removed outlier: 4.505A pdb=" N VAL G3913 " --> pdb=" O LYS G3909 " (cutoff:3.500A) removed outlier: 3.660A pdb=" N PHE G3918 " --> pdb=" O ALA G3914 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N GLU G3923 " --> pdb=" O ASN G3919 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N TYR G3924 " --> pdb=" O THR G3920 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N ILE G3925 " --> pdb=" O LEU G3921 " (cutoff:3.500A) Processing helix chain 'G' and resid 3929 through 3940 removed outlier: 3.561A pdb=" N SER G3935 " --> pdb=" O GLY G3931 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N SER G3939 " --> pdb=" O SER G3935 " (cutoff:3.500A) removed outlier: 4.898A pdb=" N ARG G3940 " --> pdb=" O LEU G3936 " (cutoff:3.500A) Processing helix chain 'G' and resid 3941 through 3959 removed outlier: 3.604A pdb=" N VAL G3945 " --> pdb=" O LEU G3941 " (cutoff:3.500A) removed outlier: 4.213A pdb=" N HIS G3954 " --> pdb=" O HIS G3950 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LYS G3958 " --> pdb=" O HIS G3954 " (cutoff:3.500A) Processing helix chain 'G' and resid 3965 through 3989 removed outlier: 3.679A pdb=" N LEU G3969 " --> pdb=" O GLN G3965 " (cutoff:3.500A) removed outlier: 4.182A pdb=" N GLU G3971 " --> pdb=" O GLU G3967 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N GLN G3976 " --> pdb=" O LEU G3972 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N MET G3982 " --> pdb=" O ASP G3978 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N LEU G3987 " --> pdb=" O LEU G3983 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N GLU G3988 " --> pdb=" O LEU G3984 " (cutoff:3.500A) removed outlier: 5.557A pdb=" N GLY G3989 " --> pdb=" O SER G3985 " (cutoff:3.500A) Processing helix chain 'G' and resid 3994 through 4008 removed outlier: 3.654A pdb=" N VAL G4001 " --> pdb=" O GLY G3997 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N LEU G4004 " --> pdb=" O MET G4000 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N SER G4008 " --> pdb=" O LEU G4004 " (cutoff:3.500A) Processing helix chain 'G' and resid 4009 through 4028 removed outlier: 4.691A pdb=" N MET G4013 " --> pdb=" O ASN G4009 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N ILE G4014 " --> pdb=" O ASN G4010 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N PHE G4021 " --> pdb=" O PHE G4017 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N LEU G4024 " --> pdb=" O MET G4020 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N LYS G4025 " --> pdb=" O PHE G4021 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N THR G4028 " --> pdb=" O LEU G4024 " (cutoff:3.500A) Processing helix chain 'G' and resid 4030 through 4035 Processing helix chain 'G' and resid 4046 through 4057 removed outlier: 3.528A pdb=" N MET G4053 " --> pdb=" O PHE G4049 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N GLU G4054 " --> pdb=" O HIS G4050 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N LYS G4057 " --> pdb=" O MET G4053 " (cutoff:3.500A) Processing helix chain 'G' and resid 4060 through 4069 Processing helix chain 'G' and resid 4081 through 4110 Proline residue: G4091 - end of helix removed outlier: 4.108A pdb=" N ASP G4094 " --> pdb=" O GLU G4090 " (cutoff:3.500A) removed outlier: 4.718A pdb=" N ILE G4095 " --> pdb=" O PRO G4091 " (cutoff:3.500A) removed outlier: 5.229A pdb=" N GLY G4096 " --> pdb=" O ALA G4092 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ASN G4098 " --> pdb=" O ASP G4094 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N VAL G4099 " --> pdb=" O ILE G4095 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N SER G4107 " --> pdb=" O LEU G4103 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N HIS G4109 " --> pdb=" O ASN G4105 " (cutoff:3.500A) Processing helix chain 'G' and resid 4113 through 4124 removed outlier: 4.128A pdb=" N GLN G4117 " --> pdb=" O ASP G4113 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N PHE G4119 " --> pdb=" O ARG G4115 " (cutoff:3.500A) Processing helix chain 'G' and resid 4125 through 4135 removed outlier: 3.617A pdb=" N TYR G4129 " --> pdb=" O SER G4125 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N GLN G4131 " --> pdb=" O LEU G4127 " (cutoff:3.500A) Proline residue: G4132 - end of helix removed outlier: 6.036A pdb=" N GLY G4135 " --> pdb=" O GLN G4131 " (cutoff:3.500A) Processing helix chain 'G' and resid 4154 through 4164 removed outlier: 3.973A pdb=" N ARG G4158 " --> pdb=" O SER G4154 " (cutoff:3.500A) removed outlier: 3.933A pdb=" N TRP G4161 " --> pdb=" O SER G4157 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N GLU G4162 " --> pdb=" O ARG G4158 " (cutoff:3.500A) Proline residue: G4164 - end of helix Processing helix chain 'G' and resid 4165 through 4180 removed outlier: 4.361A pdb=" N SER G4169 " --> pdb=" O GLN G4165 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N ARG G4171 " --> pdb=" O LYS G4167 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N ASP G4176 " --> pdb=" O GLN G4172 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N VAL G4177 " --> pdb=" O PHE G4173 " (cutoff:3.500A) removed outlier: 3.522A pdb=" N VAL G4178 " --> pdb=" O ILE G4174 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N ASN G4179 " --> pdb=" O PHE G4175 " (cutoff:3.500A) removed outlier: 5.472A pdb=" N GLU G4180 " --> pdb=" O ASP G4176 " (cutoff:3.500A) Processing helix chain 'G' and resid 4182 through 4207 removed outlier: 4.197A pdb=" N MET G4187 " --> pdb=" O GLU G4183 " (cutoff:3.500A) removed outlier: 5.279A pdb=" N GLU G4188 " --> pdb=" O LYS G4184 " (cutoff:3.500A) removed outlier: 4.009A pdb=" N ASP G4196 " --> pdb=" O ASN G4192 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ILE G4198 " --> pdb=" O CYS G4194 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N PHE G4199 " --> pdb=" O GLU G4195 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N GLN G4206 " --> pdb=" O GLN G4202 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N ILE G4207 " --> pdb=" O LEU G4203 " (cutoff:3.500A) Processing helix chain 'G' and resid 4486 through 4500 removed outlier: 3.602A pdb=" N PHE G4500 " --> pdb=" O PHE G4496 " (cutoff:3.500A) Processing helix chain 'G' and resid 4501 through 4520 removed outlier: 3.761A pdb=" N MET G4505 " --> pdb=" O TYR G4501 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N LEU G4506 " --> pdb=" O ASN G4502 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N PHE G4509 " --> pdb=" O MET G4505 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N ASN G4515 " --> pdb=" O ALA G4511 " (cutoff:3.500A) removed outlier: 4.462A pdb=" N LEU G4519 " --> pdb=" O ASN G4515 " (cutoff:3.500A) removed outlier: 5.289A pdb=" N PHE G4520 " --> pdb=" O PHE G4516 " (cutoff:3.500A) Processing helix chain 'G' and resid 4568 through 4614 removed outlier: 5.161A pdb=" N THR G4572 " --> pdb=" O TYR G4568 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N THR G4581 " --> pdb=" O ALA G4577 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N ILE G4583 " --> pdb=" O LEU G4579 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N ILE G4588 " --> pdb=" O SER G4584 " (cutoff:3.500A) removed outlier: 4.407A pdb=" N VAL G4596 " --> pdb=" O TYR G4592 " (cutoff:3.500A) Proline residue: G4597 - end of helix removed outlier: 3.576A pdb=" N ARG G4603 " --> pdb=" O VAL G4599 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N GLU G4606 " --> pdb=" O LYS G4602 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N LYS G4610 " --> pdb=" O GLU G4606 " (cutoff:3.500A) Processing helix chain 'G' and resid 4626 through 4639 removed outlier: 3.954A pdb=" N ASP G4632 " --> pdb=" O LYS G4628 " (cutoff:3.500A) removed outlier: 5.613A pdb=" N ARG G4633 " --> pdb=" O GLY G4629 " (cutoff:3.500A) removed outlier: 5.977A pdb=" N LEU G4634 " --> pdb=" O GLN G4630 " (cutoff:3.500A) removed outlier: 5.503A pdb=" N VAL G4635 " --> pdb=" O TRP G4631 " (cutoff:3.500A) removed outlier: 4.647A pdb=" N ILE G4636 " --> pdb=" O ASP G4632 " (cutoff:3.500A) removed outlier: 4.549A pdb=" N ASN G4637 " --> pdb=" O ARG G4633 " (cutoff:3.500A) removed outlier: 4.814A pdb=" N THR G4638 " --> pdb=" O LEU G4634 " (cutoff:3.500A) removed outlier: 5.389A pdb=" N GLN G4639 " --> pdb=" O VAL G4635 " (cutoff:3.500A) Processing helix chain 'G' and resid 4649 through 4659 removed outlier: 3.776A pdb=" N VAL G4654 " --> pdb=" O VAL G4650 " (cutoff:3.500A) Processing helix chain 'G' and resid 4663 through 4672 Processing helix chain 'G' and resid 4696 through 4702 removed outlier: 4.927A pdb=" N ASN G4700 " --> pdb=" O SER G4696 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N SER G4701 " --> pdb=" O ALA G4697 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N ILE G4702 " --> pdb=" O VAL G4698 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4696 through 4702' Processing helix chain 'G' and resid 4703 through 4717 removed outlier: 3.504A pdb=" N TRP G4709 " --> pdb=" O LYS G4705 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N VAL G4714 " --> pdb=" O LYS G4710 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N THR G4716 " --> pdb=" O GLY G4712 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N ASP G4717 " --> pdb=" O VAL G4713 " (cutoff:3.500A) Processing helix chain 'G' and resid 4718 through 4736 removed outlier: 3.715A pdb=" N SER G4730 " --> pdb=" O TYR G4726 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N GLY G4733 " --> pdb=" O MET G4729 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N TYR G4735 " --> pdb=" O VAL G4731 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N ASN G4736 " --> pdb=" O LEU G4732 " (cutoff:3.500A) Processing helix chain 'G' and resid 4737 through 4750 removed outlier: 4.471A pdb=" N ALA G4741 " --> pdb=" O ASN G4737 " (cutoff:3.500A) removed outlier: 5.418A pdb=" N ALA G4742 " --> pdb=" O PHE G4738 " (cutoff:3.500A) removed outlier: 7.339A pdb=" N HIS G4743 " --> pdb=" O PHE G4739 " (cutoff:3.500A) removed outlier: 5.726A pdb=" N LEU G4744 " --> pdb=" O PHE G4740 " (cutoff:3.500A) removed outlier: 5.303A pdb=" N LEU G4745 " --> pdb=" O ALA G4741 " (cutoff:3.500A) removed outlier: 5.639A pdb=" N ASP G4746 " --> pdb=" O ALA G4742 " (cutoff:3.500A) removed outlier: 5.372A pdb=" N ILE G4747 " --> pdb=" O HIS G4743 " (cutoff:3.500A) removed outlier: 4.583A pdb=" N ALA G4748 " --> pdb=" O LEU G4744 " (cutoff:3.500A) removed outlier: 4.416A pdb=" N GLY G4750 " --> pdb=" O ASP G4746 " (cutoff:3.500A) Processing helix chain 'G' and resid 4751 through 4764 removed outlier: 3.971A pdb=" N ILE G4757 " --> pdb=" O THR G4753 " (cutoff:3.500A) removed outlier: 3.680A pdb=" N THR G4762 " --> pdb=" O LEU G4758 " (cutoff:3.500A) Processing helix chain 'G' and resid 4765 through 4789 removed outlier: 3.534A pdb=" N LEU G4770 " --> pdb=" O LYS G4766 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N VAL G4777 " --> pdb=" O GLY G4773 " (cutoff:3.500A) Processing helix chain 'G' and resid 4809 through 4824 removed outlier: 6.587A pdb=" N CYS G4813 " --> pdb=" O ASP G4809 " (cutoff:3.500A) removed outlier: 4.633A pdb=" N TYR G4814 " --> pdb=" O MET G4810 " (cutoff:3.500A) removed outlier: 3.765A pdb=" N PHE G4816 " --> pdb=" O THR G4812 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N TYR G4819 " --> pdb=" O MET G4815 " (cutoff:3.500A) removed outlier: 4.893A pdb=" N VAL G4822 " --> pdb=" O MET G4818 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N ARG G4823 " --> pdb=" O TYR G4819 " (cutoff:3.500A) Processing helix chain 'G' and resid 4840 through 4855 removed outlier: 3.610A pdb=" N ILE G4846 " --> pdb=" O ILE G4842 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N PHE G4852 " --> pdb=" O ASP G4848 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N PHE G4854 " --> pdb=" O THR G4850 " (cutoff:3.500A) Processing helix chain 'G' and resid 4859 through 4884 removed outlier: 3.696A pdb=" N ILE G4863 " --> pdb=" O LEU G4859 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N LEU G4866 " --> pdb=" O ILE G4862 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N ILE G4867 " --> pdb=" O ILE G4863 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N ASP G4869 " --> pdb=" O GLY G4865 " (cutoff:3.500A) removed outlier: 4.082A pdb=" N LEU G4874 " --> pdb=" O ALA G4870 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N ARG G4875 " --> pdb=" O PHE G4871 " (cutoff:3.500A) removed outlier: 4.789A pdb=" N GLN G4878 " --> pdb=" O LEU G4874 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N LYS G4882 " --> pdb=" O GLN G4878 " (cutoff:3.500A) Processing helix chain 'G' and resid 4895 through 4903 removed outlier: 5.368A pdb=" N PHE G4899 " --> pdb=" O GLY G4895 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N ASP G4900 " --> pdb=" O ASN G4896 " (cutoff:3.500A) removed outlier: 5.573A pdb=" N VAL G4902 " --> pdb=" O TYR G4898 " (cutoff:3.500A) Proline residue: G4903 - end of helix Processing helix chain 'G' and resid 4904 through 4911 removed outlier: 4.438A pdb=" N THR G4908 " --> pdb=" O HIS G4904 " (cutoff:3.500A) Processing helix chain 'G' and resid 4915 through 4929 removed outlier: 3.868A pdb=" N TYR G4919 " --> pdb=" O ASN G4915 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ILE G4927 " --> pdb=" O LEU G4923 " (cutoff:3.500A) Processing helix chain 'G' and resid 4935 through 4948 removed outlier: 4.038A pdb=" N TRP G4942 " --> pdb=" O GLU G4938 " (cutoff:3.500A) Processing helix chain 'G' and resid 4958 through 4963 removed outlier: 3.822A pdb=" N GLN G4962 " --> pdb=" O CYS G4958 " (cutoff:3.500A) Processing helix chain 'G' and resid 54 through 59 Proline residue: G 59 - end of helix No H-bonds generated for 'chain 'G' and resid 54 through 59' Processing helix chain 'G' and resid 4615 through 4620 Processing helix chain 'J' and resid 61 through 66 removed outlier: 4.103A pdb=" N CYS J 65 " --> pdb=" O ASP J 61 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N THR J 66 " --> pdb=" O LEU J 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 61 through 66' Processing helix chain 'J' and resid 74 through 84 removed outlier: 3.555A pdb=" N ALA J 83 " --> pdb=" O GLN J 79 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N ASN J 84 " --> pdb=" O GLU J 80 " (cutoff:3.500A) Processing helix chain 'J' and resid 266 through 271 removed outlier: 4.333A pdb=" N ALA J 271 " --> pdb=" O VAL J 267 " (cutoff:3.500A) Processing helix chain 'J' and resid 318 through 323 removed outlier: 4.320A pdb=" N ALA J 322 " --> pdb=" O ASP J 318 " (cutoff:3.500A) removed outlier: 6.077A pdb=" N ASP J 323 " --> pdb=" O LYS J 319 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 318 through 323' Processing helix chain 'J' and resid 409 through 439 removed outlier: 3.583A pdb=" N ALA J 416 " --> pdb=" O GLU J 412 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N ARG J 417 " --> pdb=" O SER J 413 " (cutoff:3.500A) removed outlier: 4.492A pdb=" N ARG J 428 " --> pdb=" O PHE J 424 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ALA J 435 " --> pdb=" O ARG J 431 " (cutoff:3.500A) removed outlier: 3.987A pdb=" N LEU J 436 " --> pdb=" O GLY J 432 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N LYS J 438 " --> pdb=" O ASP J 434 " (cutoff:3.500A) removed outlier: 4.774A pdb=" N LYS J 439 " --> pdb=" O ALA J 435 " (cutoff:3.500A) Processing helix chain 'J' and resid 449 through 464 removed outlier: 4.281A pdb=" N GLY J 461 " --> pdb=" O GLN J 457 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N TYR J 462 " --> pdb=" O ASP J 458 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N PHE J 463 " --> pdb=" O LEU J 459 " (cutoff:3.500A) Processing helix chain 'J' and resid 471 through 493 removed outlier: 3.637A pdb=" N GLN J 476 " --> pdb=" O HIS J 472 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ASN J 487 " --> pdb=" O LYS J 483 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N PHE J 489 " --> pdb=" O ARG J 485 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N GLU J 492 " --> pdb=" O LEU J 488 " (cutoff:3.500A) Processing helix chain 'J' and resid 494 through 507 removed outlier: 3.794A pdb=" N CYS J 501 " --> pdb=" O LEU J 497 " (cutoff:3.500A) removed outlier: 4.481A pdb=" N VAL J 507 " --> pdb=" O ASP J 503 " (cutoff:3.500A) Processing helix chain 'J' and resid 519 through 542 removed outlier: 4.012A pdb=" N GLU J 524 " --> pdb=" O ARG J 520 " (cutoff:3.500A) removed outlier: 5.312A pdb=" N SER J 525 " --> pdb=" O GLU J 521 " (cutoff:3.500A) removed outlier: 6.260A pdb=" N TRP J 526 " --> pdb=" O ALA J 522 " (cutoff:3.500A) removed outlier: 6.090A pdb=" N LYS J 527 " --> pdb=" O GLY J 523 " (cutoff:3.500A) removed outlier: 6.087A pdb=" N SER J 528 " --> pdb=" O GLU J 524 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLU J 535 " --> pdb=" O ASN J 531 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N ALA J 539 " --> pdb=" O GLU J 535 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N ILE J 541 " --> pdb=" O LEU J 537 " (cutoff:3.500A) Processing helix chain 'J' and resid 544 through 552 removed outlier: 3.730A pdb=" N GLN J 550 " --> pdb=" O LYS J 546 " (cutoff:3.500A) Processing helix chain 'J' and resid 554 through 563 removed outlier: 3.737A pdb=" N SER J 560 " --> pdb=" O ASP J 556 " (cutoff:3.500A) removed outlier: 4.710A pdb=" N GLU J 563 " --> pdb=" O ILE J 559 " (cutoff:3.500A) Processing helix chain 'J' and resid 567 through 582 removed outlier: 3.638A pdb=" N LEU J 575 " --> pdb=" O ILE J 571 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N SER J 582 " --> pdb=" O VAL J 578 " (cutoff:3.500A) Processing helix chain 'J' and resid 583 through 590 removed outlier: 4.161A pdb=" N ASN J 587 " --> pdb=" O PRO J 583 " (cutoff:3.500A) removed outlier: 4.037A pdb=" N ILE J 588 " --> pdb=" O GLU J 584 " (cutoff:3.500A) removed outlier: 5.851A pdb=" N LYS J 590 " --> pdb=" O LEU J 586 " (cutoff:3.500A) Processing helix chain 'J' and resid 591 through 605 removed outlier: 3.809A pdb=" N GLY J 605 " --> pdb=" O LEU J 601 " (cutoff:3.500A) Processing helix chain 'J' and resid 607 through 620 removed outlier: 3.675A pdb=" N VAL J 619 " --> pdb=" O CYS J 615 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N CYS J 620 " --> pdb=" O SER J 616 " (cutoff:3.500A) Processing helix chain 'J' and resid 625 through 640 removed outlier: 3.812A pdb=" N GLN J 629 " --> pdb=" O VAL J 625 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N LEU J 631 " --> pdb=" O SER J 627 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N ASN J 635 " --> pdb=" O LEU J 631 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N LEU J 637 " --> pdb=" O CYS J 633 " (cutoff:3.500A) Proline residue: J 638 - end of helix Processing helix chain 'J' and resid 821 through 827 removed outlier: 3.832A pdb=" N ALA J 825 " --> pdb=" O PRO J 821 " (cutoff:3.500A) removed outlier: 3.861A pdb=" N VAL J 826 " --> pdb=" O CYS J 822 " (cutoff:3.500A) removed outlier: 4.926A pdb=" N LEU J 827 " --> pdb=" O TYR J 823 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 821 through 827' Processing helix chain 'J' and resid 875 through 901 removed outlier: 4.060A pdb=" N GLU J 879 " --> pdb=" O PRO J 875 " (cutoff:3.500A) removed outlier: 5.532A pdb=" N ARG J 880 " --> pdb=" O PRO J 876 " (cutoff:3.500A) removed outlier: 4.629A pdb=" N ILE J 881 " --> pdb=" O HIS J 877 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N LEU J 892 " --> pdb=" O ASN J 888 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N LYS J 897 " --> pdb=" O TRP J 893 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N LEU J 900 " --> pdb=" O ASN J 896 " (cutoff:3.500A) removed outlier: 4.992A pdb=" N GLY J 901 " --> pdb=" O LYS J 897 " (cutoff:3.500A) Processing helix chain 'J' and resid 925 through 930 removed outlier: 4.633A pdb=" N ASN J 930 " --> pdb=" O GLU J 926 " (cutoff:3.500A) Processing helix chain 'J' and resid 931 through 946 removed outlier: 3.662A pdb=" N LEU J 937 " --> pdb=" O LEU J 933 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N GLU J 938 " --> pdb=" O GLN J 934 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N LEU J 943 " --> pdb=" O THR J 939 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N ALA J 945 " --> pdb=" O LYS J 941 " (cutoff:3.500A) Processing helix chain 'J' and resid 982 through 987 removed outlier: 3.953A pdb=" N ILE J 986 " --> pdb=" O ASP J 982 " (cutoff:3.500A) removed outlier: 5.258A pdb=" N LYS J 987 " --> pdb=" O LEU J 983 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 982 through 987' Processing helix chain 'J' and resid 989 through 1012 removed outlier: 3.727A pdb=" N MET J 995 " --> pdb=" O SER J 991 " (cutoff:3.500A) Processing helix chain 'J' and resid 1042 through 1061 removed outlier: 4.027A pdb=" N ASN J1046 " --> pdb=" O THR J1042 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N SER J1049 " --> pdb=" O SER J1045 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N LEU J1057 " --> pdb=" O ALA J1053 " (cutoff:3.500A) Processing helix chain 'J' and resid 1226 through 1231 removed outlier: 4.118A pdb=" N GLY J1231 " --> pdb=" O PHE J1227 " (cutoff:3.500A) Processing helix chain 'J' and resid 1571 through 1577 removed outlier: 4.524A pdb=" N HIS J1575 " --> pdb=" O PHE J1571 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N LYS J1576 " --> pdb=" O LYS J1572 " (cutoff:3.500A) removed outlier: 5.253A pdb=" N ASN J1577 " --> pdb=" O SER J1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1571 through 1577' Processing helix chain 'J' and resid 1643 through 1648 removed outlier: 4.364A pdb=" N GLN J1647 " --> pdb=" O GLU J1643 " (cutoff:3.500A) removed outlier: 4.400A pdb=" N GLU J1648 " --> pdb=" O LEU J1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1643 through 1648' Processing helix chain 'J' and resid 1649 through 1666 removed outlier: 4.178A pdb=" N PHE J1653 " --> pdb=" O GLU J1649 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N CYS J1665 " --> pdb=" O TYR J1661 " (cutoff:3.500A) removed outlier: 4.048A pdb=" N ALA J1666 " --> pdb=" O SER J1662 " (cutoff:3.500A) Processing helix chain 'J' and resid 1669 through 1681 removed outlier: 3.582A pdb=" N SER J1678 " --> pdb=" O HIS J1674 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N HIS J1679 " --> pdb=" O ALA J1675 " (cutoff:3.500A) Processing helix chain 'J' and resid 1682 through 1691 removed outlier: 3.566A pdb=" N TYR J1687 " --> pdb=" O PRO J1683 " (cutoff:3.500A) removed outlier: 4.583A pdb=" N GLU J1690 " --> pdb=" O LEU J1686 " (cutoff:3.500A) Processing helix chain 'J' and resid 1695 through 1710 removed outlier: 3.551A pdb=" N TYR J1702 " --> pdb=" O LEU J1698 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N ILE J1707 " --> pdb=" O TYR J1703 " (cutoff:3.500A) Processing helix chain 'J' and resid 1711 through 1722 removed outlier: 4.606A pdb=" N ALA J1715 " --> pdb=" O LEU J1711 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N ALA J1717 " --> pdb=" O SER J1713 " (cutoff:3.500A) removed outlier: 3.997A pdb=" N MET J1721 " --> pdb=" O ALA J1717 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N ASN J1722 " --> pdb=" O ARG J1718 " (cutoff:3.500A) Processing helix chain 'J' and resid 1730 through 1736 removed outlier: 3.797A pdb=" N LYS J1734 " --> pdb=" O THR J1730 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N SER J1735 " --> pdb=" O GLU J1731 " (cutoff:3.500A) removed outlier: 4.917A pdb=" N ILE J1736 " --> pdb=" O GLU J1732 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1730 through 1736' Processing helix chain 'J' and resid 1771 through 1776 removed outlier: 4.558A pdb=" N CYS J1775 " --> pdb=" O ILE J1771 " (cutoff:3.500A) removed outlier: 5.455A pdb=" N TYR J1776 " --> pdb=" O ASN J1772 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1771 through 1776' Processing helix chain 'J' and resid 1783 through 1805 removed outlier: 4.095A pdb=" N LEU J1787 " --> pdb=" O PRO J1783 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ILE J1792 " --> pdb=" O LYS J1788 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N GLU J1801 " --> pdb=" O GLU J1797 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N LEU J1804 " --> pdb=" O GLN J1800 " (cutoff:3.500A) Processing helix chain 'J' and resid 1813 through 1832 removed outlier: 3.503A pdb=" N LEU J1817 " --> pdb=" O THR J1813 " (cutoff:3.500A) Proline residue: J1820 - end of helix removed outlier: 3.557A pdb=" N MET J1831 " --> pdb=" O THR J1827 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N GLY J1832 " --> pdb=" O LEU J1828 " (cutoff:3.500A) Processing helix chain 'J' and resid 1835 through 1847 removed outlier: 3.765A pdb=" N LYS J1840 " --> pdb=" O ASN J1836 " (cutoff:3.500A) Processing helix chain 'J' and resid 1901 through 1938 removed outlier: 4.224A pdb=" N GLN J1906 " --> pdb=" O PRO J1902 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N TYR J1913 " --> pdb=" O LEU J1909 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N LEU J1914 " --> pdb=" O LEU J1910 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N CYS J1915 " --> pdb=" O LEU J1911 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ALA J1928 " --> pdb=" O GLU J1924 " (cutoff:3.500A) removed outlier: 3.737A pdb=" N SER J1930 " --> pdb=" O ILE J1926 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N ASP J1932 " --> pdb=" O ALA J1928 " (cutoff:3.500A) Processing helix chain 'J' and resid 1940 through 1953 removed outlier: 3.506A pdb=" N GLN J1950 " --> pdb=" O ASN J1946 " (cutoff:3.500A) removed outlier: 3.773A pdb=" N ASN J1953 " --> pdb=" O MET J1949 " (cutoff:3.500A) Processing helix chain 'J' and resid 1990 through 1998 removed outlier: 5.322A pdb=" N ARG J1994 " --> pdb=" O PRO J1990 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N GLN J1996 " --> pdb=" O GLU J1992 " (cutoff:3.500A) removed outlier: 4.709A pdb=" N LEU J1998 " --> pdb=" O ARG J1994 " (cutoff:3.500A) Processing helix chain 'J' and resid 1999 through 2008 Processing helix chain 'J' and resid 2026 through 2039 removed outlier: 3.884A pdb=" N LEU J2030 " --> pdb=" O ILE J2026 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N LEU J2031 " --> pdb=" O ARG J2027 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N VAL J2034 " --> pdb=" O LEU J2030 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N GLU J2035 " --> pdb=" O LEU J2031 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N LYS J2036 " --> pdb=" O SER J2032 " (cutoff:3.500A) removed outlier: 4.685A pdb=" N TYR J2039 " --> pdb=" O GLU J2035 " (cutoff:3.500A) Processing helix chain 'J' and resid 2058 through 2074 removed outlier: 4.208A pdb=" N LEU J2062 " --> pdb=" O THR J2058 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N VAL J2068 " --> pdb=" O SER J2064 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N GLU J2073 " --> pdb=" O ARG J2069 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N SER J2074 " --> pdb=" O TRP J2070 " (cutoff:3.500A) Processing helix chain 'J' and resid 2078 through 2095 removed outlier: 3.700A pdb=" N ALA J2084 " --> pdb=" O GLU J2080 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N VAL J2087 " --> pdb=" O ARG J2083 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N LEU J2088 " --> pdb=" O ALA J2084 " (cutoff:3.500A) Processing helix chain 'J' and resid 2096 through 2106 Proline residue: J2104 - end of helix Processing helix chain 'J' and resid 2110 through 2132 removed outlier: 3.980A pdb=" N VAL J2114 " --> pdb=" O ASN J2110 " (cutoff:3.500A) removed outlier: 5.157A pdb=" N GLU J2115 " --> pdb=" O GLY J2111 " (cutoff:3.500A) removed outlier: 5.063A pdb=" N ASP J2116 " --> pdb=" O VAL J2112 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N ILE J2118 " --> pdb=" O VAL J2114 " (cutoff:3.500A) removed outlier: 4.003A pdb=" N ASN J2119 " --> pdb=" O GLU J2115 " (cutoff:3.500A) removed outlier: 4.741A pdb=" N SER J2132 " --> pdb=" O ARG J2128 " (cutoff:3.500A) Processing helix chain 'J' and resid 2138 through 2153 removed outlier: 3.593A pdb=" N LEU J2142 " --> pdb=" O GLU J2138 " (cutoff:3.500A) removed outlier: 3.927A pdb=" N MET J2143 " --> pdb=" O GLU J2139 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ASP J2149 " --> pdb=" O ARG J2145 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N ILE J2150 " --> pdb=" O GLY J2146 " (cutoff:3.500A) removed outlier: 4.447A pdb=" N ASN J2153 " --> pdb=" O ASP J2149 " (cutoff:3.500A) Processing helix chain 'J' and resid 2154 through 2160 removed outlier: 3.718A pdb=" N GLN J2158 " --> pdb=" O LYS J2154 " (cutoff:3.500A) removed outlier: 6.103A pdb=" N HIS J2159 " --> pdb=" O VAL J2155 " (cutoff:3.500A) Proline residue: J2160 - end of helix No H-bonds generated for 'chain 'J' and resid 2154 through 2160' Processing helix chain 'J' and resid 2161 through 2167 removed outlier: 3.648A pdb=" N GLY J2167 " --> pdb=" O MET J2163 " (cutoff:3.500A) Processing helix chain 'J' and resid 2168 through 2181 removed outlier: 3.791A pdb=" N VAL J2172 " --> pdb=" O MET J2168 " (cutoff:3.500A) removed outlier: 5.379A pdb=" N GLY J2181 " --> pdb=" O VAL J2177 " (cutoff:3.500A) Processing helix chain 'J' and resid 2191 through 2209 removed outlier: 3.938A pdb=" N CYS J2197 " --> pdb=" O MET J2193 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N PHE J2200 " --> pdb=" O ASN J2196 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N ARG J2206 " --> pdb=" O CYS J2202 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N ILE J2207 " --> pdb=" O TYR J2203 " (cutoff:3.500A) removed outlier: 5.040A pdb=" N SER J2208 " --> pdb=" O PHE J2204 " (cutoff:3.500A) removed outlier: 5.322A pdb=" N ARG J2209 " --> pdb=" O CYS J2205 " (cutoff:3.500A) Processing helix chain 'J' and resid 2210 through 2217 removed outlier: 3.895A pdb=" N ALA J2214 " --> pdb=" O GLN J2210 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N ASP J2217 " --> pdb=" O LYS J2213 " (cutoff:3.500A) Processing helix chain 'J' and resid 2218 through 2225 removed outlier: 4.410A pdb=" N GLU J2224 " --> pdb=" O SER J2220 " (cutoff:3.500A) removed outlier: 4.774A pdb=" N ASN J2225 " --> pdb=" O TYR J2221 " (cutoff:3.500A) Processing helix chain 'J' and resid 2232 through 2239 removed outlier: 4.609A pdb=" N ARG J2236 " --> pdb=" O SER J2232 " (cutoff:3.500A) removed outlier: 8.633A pdb=" N GLY J2237 " --> pdb=" O PRO J2233 " (cutoff:3.500A) removed outlier: 5.161A pdb=" N SER J2238 " --> pdb=" O ALA J2234 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N THR J2239 " --> pdb=" O MET J2235 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 2232 through 2239' Processing helix chain 'J' and resid 2240 through 2249 removed outlier: 3.773A pdb=" N VAL J2248 " --> pdb=" O ALA J2244 " (cutoff:3.500A) Processing helix chain 'J' and resid 2251 through 2258 removed outlier: 3.757A pdb=" N LEU J2258 " --> pdb=" O LEU J2254 " (cutoff:3.500A) Processing helix chain 'J' and resid 2259 through 2274 removed outlier: 3.806A pdb=" N LEU J2263 " --> pdb=" O ARG J2259 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N VAL J2266 " --> pdb=" O ASP J2262 " (cutoff:3.500A) removed outlier: 5.325A pdb=" N GLY J2274 " --> pdb=" O LEU J2270 " (cutoff:3.500A) Processing helix chain 'J' and resid 2293 through 2308 removed outlier: 5.256A pdb=" N GLU J2297 " --> pdb=" O PRO J2293 " (cutoff:3.500A) removed outlier: 4.606A pdb=" N ARG J2298 " --> pdb=" O VAL J2294 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N TYR J2299 " --> pdb=" O GLU J2295 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N LEU J2300 " --> pdb=" O GLY J2296 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N ARG J2304 " --> pdb=" O LEU J2300 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N PHE J2305 " --> pdb=" O ASP J2301 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N ALA J2306 " --> pdb=" O PHE J2302 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N PHE J2308 " --> pdb=" O ARG J2304 " (cutoff:3.500A) Processing helix chain 'J' and resid 2314 through 2329 removed outlier: 4.537A pdb=" N ALA J2318 " --> pdb=" O VAL J2314 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N ASN J2319 " --> pdb=" O GLU J2315 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N VAL J2322 " --> pdb=" O ALA J2318 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N ARG J2327 " --> pdb=" O ARG J2323 " (cutoff:3.500A) removed outlier: 4.558A pdb=" N ARG J2328 " --> pdb=" O LEU J2324 " (cutoff:3.500A) Proline residue: J2329 - end of helix Processing helix chain 'J' and resid 2343 through 2355 removed outlier: 3.584A pdb=" N GLU J2349 " --> pdb=" O LEU J2345 " (cutoff:3.500A) removed outlier: 4.353A pdb=" N GLU J2350 " --> pdb=" O ALA J2346 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ALA J2351 " --> pdb=" O ALA J2347 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N ILE J2352 " --> pdb=" O MET J2348 " (cutoff:3.500A) removed outlier: 4.465A pdb=" N LYS J2353 " --> pdb=" O GLU J2349 " (cutoff:3.500A) removed outlier: 4.322A pdb=" N ILE J2354 " --> pdb=" O GLU J2350 " (cutoff:3.500A) removed outlier: 5.843A pdb=" N ALA J2355 " --> pdb=" O ALA J2351 " (cutoff:3.500A) Processing helix chain 'J' and resid 2386 through 2404 removed outlier: 3.644A pdb=" N MET J2390 " --> pdb=" O GLY J2386 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N ALA J2394 " --> pdb=" O MET J2390 " (cutoff:3.500A) removed outlier: 3.634A pdb=" N ILE J2397 " --> pdb=" O TYR J2393 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N ARG J2402 " --> pdb=" O ASP J2398 " (cutoff:3.500A) removed outlier: 4.271A pdb=" N ALA J2404 " --> pdb=" O LEU J2400 " (cutoff:3.500A) Processing helix chain 'J' and resid 2408 through 2413 removed outlier: 4.117A pdb=" N ALA J2412 " --> pdb=" O HIS J2408 " (cutoff:3.500A) Processing helix chain 'J' and resid 2414 through 2429 removed outlier: 4.799A pdb=" N ILE J2418 " --> pdb=" O LYS J2414 " (cutoff:3.500A) removed outlier: 6.350A pdb=" N ARG J2419 " --> pdb=" O GLY J2415 " (cutoff:3.500A) removed outlier: 4.796A pdb=" N ILE J2420 " --> pdb=" O GLU J2416 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N ARG J2421 " --> pdb=" O ALA J2417 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N ILE J2423 " --> pdb=" O ARG J2419 " (cutoff:3.500A) removed outlier: 3.977A pdb=" N ILE J2428 " --> pdb=" O LEU J2424 " (cutoff:3.500A) Proline residue: J2429 - end of helix Processing helix chain 'J' and resid 2432 through 2437 Processing helix chain 'J' and resid 2462 through 2477 removed outlier: 3.692A pdb=" N LYS J2466 " --> pdb=" O CYS J2462 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ALA J2467 " --> pdb=" O PRO J2463 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N ALA J2468 " --> pdb=" O ASP J2464 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N PHE J2472 " --> pdb=" O ALA J2468 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ARG J2475 " --> pdb=" O LEU J2471 " (cutoff:3.500A) Processing helix chain 'J' and resid 2481 through 2489 removed outlier: 4.133A pdb=" N LEU J2485 " --> pdb=" O VAL J2481 " (cutoff:3.500A) removed outlier: 4.012A pdb=" N LEU J2486 " --> pdb=" O GLN J2482 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N LEU J2489 " --> pdb=" O LEU J2485 " (cutoff:3.500A) Processing helix chain 'J' and resid 2494 through 2500 removed outlier: 4.528A pdb=" N ARG J2498 " --> pdb=" O LEU J2494 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ALA J2499 " --> pdb=" O PRO J2495 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N ALA J2500 " --> pdb=" O ASP J2496 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 2494 through 2500' Processing helix chain 'J' and resid 2514 through 2528 removed outlier: 4.347A pdb=" N ASN J2518 " --> pdb=" O ALA J2514 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N ARG J2519 " --> pdb=" O LEU J2515 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N LEU J2521 " --> pdb=" O LEU J2517 " (cutoff:3.500A) removed outlier: 4.806A pdb=" N CYS J2522 " --> pdb=" O ASN J2518 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N THR J2523 " --> pdb=" O ARG J2519 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N VAL J2525 " --> pdb=" O LEU J2521 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N LEU J2526 " --> pdb=" O CYS J2522 " (cutoff:3.500A) Proline residue: J2527 - end of helix Processing helix chain 'J' and resid 2536 through 2553 removed outlier: 4.792A pdb=" N GLU J2540 " --> pdb=" O PHE J2536 " (cutoff:3.500A) Processing helix chain 'J' and resid 2558 through 2576 removed outlier: 3.880A pdb=" N GLU J2571 " --> pdb=" O ARG J2567 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N VAL J2572 " --> pdb=" O ASP J2568 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N CYS J2573 " --> pdb=" O SER J2569 " (cutoff:3.500A) removed outlier: 3.981A pdb=" N LEU J2574 " --> pdb=" O ILE J2570 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N SER J2576 " --> pdb=" O VAL J2572 " (cutoff:3.500A) Processing helix chain 'J' and resid 2582 through 2601 removed outlier: 4.073A pdb=" N MET J2586 " --> pdb=" O ARG J2582 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ARG J2592 " --> pdb=" O HIS J2588 " (cutoff:3.500A) Proline residue: J2598 - end of helix Processing helix chain 'J' and resid 2605 through 2625 removed outlier: 3.773A pdb=" N LEU J2611 " --> pdb=" O PRO J2607 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ASN J2613 " --> pdb=" O LYS J2609 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N HIS J2614 " --> pdb=" O LEU J2610 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N TYR J2615 " --> pdb=" O LEU J2611 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ARG J2617 " --> pdb=" O ASN J2613 " (cutoff:3.500A) Proline residue: J2625 - end of helix Processing helix chain 'J' and resid 2635 through 2653 removed outlier: 4.144A pdb=" N ALA J2652 " --> pdb=" O GLY J2648 " (cutoff:3.500A) removed outlier: 4.775A pdb=" N LEU J2653 " --> pdb=" O ILE J2649 " (cutoff:3.500A) Processing helix chain 'J' and resid 2659 through 2677 removed outlier: 3.802A pdb=" N PHE J2663 " --> pdb=" O GLU J2659 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N LEU J2665 " --> pdb=" O GLU J2661 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N ALA J2666 " --> pdb=" O LEU J2662 " (cutoff:3.500A) Proline residue: J2668 - end of helix Processing helix chain 'J' and resid 2719 through 2739 removed outlier: 4.708A pdb=" N ASN J2723 " --> pdb=" O GLU J2719 " (cutoff:3.500A) removed outlier: 5.044A pdb=" N LYS J2724 " --> pdb=" O TYR J2720 " (cutoff:3.500A) removed outlier: 3.623A pdb=" N ASP J2736 " --> pdb=" O LYS J2732 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N LYS J2737 " --> pdb=" O TRP J2733 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N ALA J2739 " --> pdb=" O MET J2735 " (cutoff:3.500A) Processing helix chain 'J' and resid 2765 through 2774 removed outlier: 4.111A pdb=" N LYS J2769 " --> pdb=" O SER J2765 " (cutoff:3.500A) removed outlier: 5.385A pdb=" N GLU J2770 " --> pdb=" O GLU J2766 " (cutoff:3.500A) removed outlier: 6.653A pdb=" N ILE J2771 " --> pdb=" O LYS J2767 " (cutoff:3.500A) removed outlier: 6.093A pdb=" N TYR J2772 " --> pdb=" O GLU J2768 " (cutoff:3.500A) removed outlier: 4.304A pdb=" N TRP J2774 " --> pdb=" O GLU J2770 " (cutoff:3.500A) Processing helix chain 'J' and resid 2775 through 2787 removed outlier: 3.900A pdb=" N SER J2779 " --> pdb=" O PRO J2775 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N LYS J2781 " --> pdb=" O LYS J2777 " (cutoff:3.500A) removed outlier: 5.034A pdb=" N THR J2782 " --> pdb=" O GLU J2778 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N TRP J2786 " --> pdb=" O THR J2782 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N GLY J2787 " --> pdb=" O MET J2783 " (cutoff:3.500A) Processing helix chain 'J' and resid 2835 through 2863 removed outlier: 3.717A pdb=" N MET J2841 " --> pdb=" O ASP J2837 " (cutoff:3.500A) removed outlier: 3.911A pdb=" N MET J2844 " --> pdb=" O ALA J2840 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ASN J2848 " --> pdb=" O MET J2844 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N HIS J2850 " --> pdb=" O ALA J2846 " (cutoff:3.500A) removed outlier: 3.825A pdb=" N ASN J2851 " --> pdb=" O GLU J2847 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N TRP J2853 " --> pdb=" O TYR J2849 " (cutoff:3.500A) removed outlier: 5.123A pdb=" N SER J2863 " --> pdb=" O LEU J2859 " (cutoff:3.500A) Processing helix chain 'J' and resid 2881 through 2894 removed outlier: 3.513A pdb=" N ASP J2886 " --> pdb=" O GLU J2882 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N GLU J2888 " --> pdb=" O ALA J2884 " (cutoff:3.500A) removed outlier: 4.497A pdb=" N LYS J2889 " --> pdb=" O LYS J2885 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N ALA J2890 " --> pdb=" O ASP J2886 " (cutoff:3.500A) removed outlier: 4.436A pdb=" N ILE J2893 " --> pdb=" O LYS J2889 " (cutoff:3.500A) removed outlier: 4.721A pdb=" N LEU J2894 " --> pdb=" O ALA J2890 " (cutoff:3.500A) Processing helix chain 'J' and resid 2987 through 3004 removed outlier: 4.664A pdb=" N LEU J2991 " --> pdb=" O ALA J2987 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N LYS J3000 " --> pdb=" O HIS J2996 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N GLU J3003 " --> pdb=" O ASN J2999 " (cutoff:3.500A) removed outlier: 4.375A pdb=" N MET J3004 " --> pdb=" O LYS J3000 " (cutoff:3.500A) Processing helix chain 'J' and resid 3011 through 3028 removed outlier: 4.276A pdb=" N ALA J3027 " --> pdb=" O PHE J3023 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N THR J3028 " --> pdb=" O GLY J3024 " (cutoff:3.500A) Processing helix chain 'J' and resid 3035 through 3052 removed outlier: 3.933A pdb=" N GLU J3052 " --> pdb=" O LYS J3048 " (cutoff:3.500A) Processing helix chain 'J' and resid 3062 through 3082 removed outlier: 4.250A pdb=" N ALA J3066 " --> pdb=" O LEU J3062 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N GLU J3067 " --> pdb=" O ASP J3063 " (cutoff:3.500A) removed outlier: 3.982A pdb=" N ASP J3068 " --> pdb=" O ASN J3064 " (cutoff:3.500A) removed outlier: 5.211A pdb=" N LEU J3069 " --> pdb=" O ALA J3065 " (cutoff:3.500A) removed outlier: 5.584A pdb=" N GLU J3070 " --> pdb=" O ALA J3066 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N MET J3073 " --> pdb=" O LEU J3069 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N GLN J3080 " --> pdb=" O LEU J3076 " (cutoff:3.500A) removed outlier: 4.118A pdb=" N PHE J3081 " --> pdb=" O LYS J3077 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N THR J3082 " --> pdb=" O GLN J3078 " (cutoff:3.500A) Processing helix chain 'J' and resid 3100 through 3117 Proline residue: J3104 - end of helix removed outlier: 3.579A pdb=" N SER J3107 " --> pdb=" O LEU J3103 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N HIS J3112 " --> pdb=" O SER J3108 " (cutoff:3.500A) removed outlier: 5.098A pdb=" N GLN J3117 " --> pdb=" O ILE J3113 " (cutoff:3.500A) Processing helix chain 'J' and resid 3125 through 3142 removed outlier: 3.895A pdb=" N SER J3137 " --> pdb=" O ARG J3133 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ALA J3140 " --> pdb=" O THR J3136 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N GLY J3142 " --> pdb=" O LEU J3138 " (cutoff:3.500A) Processing helix chain 'J' and resid 3152 through 3163 removed outlier: 3.634A pdb=" N LEU J3160 " --> pdb=" O LEU J3156 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N ALA J3161 " --> pdb=" O GLY J3157 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N ALA J3162 " --> pdb=" O GLU J3158 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N PHE J3163 " --> pdb=" O CYS J3159 " (cutoff:3.500A) Processing helix chain 'J' and resid 3172 through 3182 removed outlier: 4.218A pdb=" N HIS J3179 " --> pdb=" O HIS J3175 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ASN J3180 " --> pdb=" O LEU J3176 " (cutoff:3.500A) Processing helix chain 'J' and resid 3585 through 3607 removed outlier: 3.942A pdb=" N LEU J3592 " --> pdb=" O TRP J3588 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N SER J3593 " --> pdb=" O HIS J3589 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N LYS J3594 " --> pdb=" O LYS J3590 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N VAL J3601 " --> pdb=" O LYS J3597 " (cutoff:3.500A) removed outlier: 3.916A pdb=" N ALA J3607 " --> pdb=" O CYS J3603 " (cutoff:3.500A) Processing helix chain 'J' and resid 3613 through 3629 removed outlier: 3.779A pdb=" N GLN J3623 " --> pdb=" O ASN J3619 " (cutoff:3.500A) Processing helix chain 'J' and resid 3636 through 3647 removed outlier: 4.064A pdb=" N LYS J3640 " --> pdb=" O TYR J3636 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N GLU J3643 " --> pdb=" O ASP J3639 " (cutoff:3.500A) removed outlier: 4.616A pdb=" N LYS J3647 " --> pdb=" O GLU J3643 " (cutoff:3.500A) Processing helix chain 'J' and resid 3663 through 3678 removed outlier: 3.588A pdb=" N LEU J3668 " --> pdb=" O PRO J3664 " (cutoff:3.500A) removed outlier: 4.423A pdb=" N THR J3678 " --> pdb=" O ARG J3674 " (cutoff:3.500A) Processing helix chain 'J' and resid 3686 through 3700 removed outlier: 4.131A pdb=" N ASP J3694 " --> pdb=" O MET J3690 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N ALA J3697 " --> pdb=" O ALA J3693 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N SER J3699 " --> pdb=" O ILE J3695 " (cutoff:3.500A) removed outlier: 5.318A pdb=" N CYS J3700 " --> pdb=" O MET J3696 " (cutoff:3.500A) Processing helix chain 'J' and resid 3714 through 3734 removed outlier: 4.117A pdb=" N LYS J3718 " --> pdb=" O SER J3714 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N LYS J3722 " --> pdb=" O LYS J3718 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N LEU J3732 " --> pdb=" O GLN J3728 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ASP J3734 " --> pdb=" O ALA J3730 " (cutoff:3.500A) Processing helix chain 'J' and resid 3736 through 3749 removed outlier: 3.560A pdb=" N MET J3740 " --> pdb=" O GLY J3736 " (cutoff:3.500A) removed outlier: 4.119A pdb=" N VAL J3741 " --> pdb=" O ALA J3737 " (cutoff:3.500A) removed outlier: 4.133A pdb=" N LEU J3742 " --> pdb=" O ALA J3738 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N ILE J3745 " --> pdb=" O VAL J3741 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N SER J3746 " --> pdb=" O LEU J3742 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N SER J3748 " --> pdb=" O THR J3744 " (cutoff:3.500A) removed outlier: 4.874A pdb=" N LYS J3749 " --> pdb=" O ILE J3745 " (cutoff:3.500A) Processing helix chain 'J' and resid 3753 through 3768 removed outlier: 3.724A pdb=" N LYS J3761 " --> pdb=" O ALA J3757 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N ALA J3765 " --> pdb=" O LYS J3761 " (cutoff:3.500A) Processing helix chain 'J' and resid 3771 through 3786 removed outlier: 3.767A pdb=" N LEU J3779 " --> pdb=" O GLN J3775 " (cutoff:3.500A) removed outlier: 3.819A pdb=" N GLU J3784 " --> pdb=" O GLU J3780 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N LYS J3786 " --> pdb=" O LEU J3782 " (cutoff:3.500A) Processing helix chain 'J' and resid 3787 through 3801 removed outlier: 4.766A pdb=" N PHE J3791 " --> pdb=" O ASP J3787 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N SER J3793 " --> pdb=" O GLY J3789 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N GLY J3796 " --> pdb=" O GLN J3792 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N SER J3800 " --> pdb=" O GLY J3796 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N CYS J3801 " --> pdb=" O LEU J3797 " (cutoff:3.500A) Processing helix chain 'J' and resid 3805 through 3819 removed outlier: 3.910A pdb=" N PHE J3809 " --> pdb=" O ASP J3805 " (cutoff:3.500A) Processing helix chain 'J' and resid 3833 through 3849 removed outlier: 3.642A pdb=" N THR J3837 " --> pdb=" O ASP J3833 " (cutoff:3.500A) removed outlier: 3.912A pdb=" N PHE J3841 " --> pdb=" O THR J3837 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N PHE J3843 " --> pdb=" O ASP J3839 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N LEU J3847 " --> pdb=" O PHE J3843 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N CYS J3848 " --> pdb=" O LEU J3844 " (cutoff:3.500A) Processing helix chain 'J' and resid 3852 through 3861 removed outlier: 3.544A pdb=" N ASN J3857 " --> pdb=" O SER J3853 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N TYR J3858 " --> pdb=" O ASP J3854 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N ARG J3860 " --> pdb=" O GLN J3856 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N THR J3861 " --> pdb=" O ASN J3857 " (cutoff:3.500A) Processing helix chain 'J' and resid 3870 through 3894 removed outlier: 3.543A pdb=" N VAL J3876 " --> pdb=" O ILE J3872 " (cutoff:3.500A) removed outlier: 3.737A pdb=" N TYR J3878 " --> pdb=" O SER J3874 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N LEU J3879 " --> pdb=" O THR J3875 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N ARG J3881 " --> pdb=" O ASP J3877 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N SER J3885 " --> pdb=" O ARG J3881 " (cutoff:3.500A) removed outlier: 3.960A pdb=" N TYR J3893 " --> pdb=" O PHE J3889 " (cutoff:3.500A) Processing helix chain 'J' and resid 3900 through 3926 removed outlier: 3.525A pdb=" N PHE J3907 " --> pdb=" O GLY J3903 " (cutoff:3.500A) removed outlier: 4.021A pdb=" N LYS J3909 " --> pdb=" O ARG J3905 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N ALA J3910 " --> pdb=" O ASN J3906 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N GLN J3912 " --> pdb=" O SER J3908 " (cutoff:3.500A) removed outlier: 4.503A pdb=" N VAL J3913 " --> pdb=" O LYS J3909 " (cutoff:3.500A) removed outlier: 3.660A pdb=" N PHE J3918 " --> pdb=" O ALA J3914 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N GLU J3923 " --> pdb=" O ASN J3919 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N TYR J3924 " --> pdb=" O THR J3920 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N ILE J3925 " --> pdb=" O LEU J3921 " (cutoff:3.500A) Processing helix chain 'J' and resid 3929 through 3940 removed outlier: 3.562A pdb=" N SER J3935 " --> pdb=" O GLY J3931 " (cutoff:3.500A) removed outlier: 4.411A pdb=" N SER J3939 " --> pdb=" O SER J3935 " (cutoff:3.500A) removed outlier: 4.898A pdb=" N ARG J3940 " --> pdb=" O LEU J3936 " (cutoff:3.500A) Processing helix chain 'J' and resid 3941 through 3959 removed outlier: 3.604A pdb=" N VAL J3945 " --> pdb=" O LEU J3941 " (cutoff:3.500A) removed outlier: 4.212A pdb=" N HIS J3954 " --> pdb=" O HIS J3950 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LYS J3958 " --> pdb=" O HIS J3954 " (cutoff:3.500A) Processing helix chain 'J' and resid 3965 through 3989 removed outlier: 3.679A pdb=" N LEU J3969 " --> pdb=" O GLN J3965 " (cutoff:3.500A) removed outlier: 4.182A pdb=" N GLU J3971 " --> pdb=" O GLU J3967 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N GLN J3976 " --> pdb=" O LEU J3972 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N MET J3982 " --> pdb=" O ASP J3978 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N LEU J3987 " --> pdb=" O LEU J3983 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N GLU J3988 " --> pdb=" O LEU J3984 " (cutoff:3.500A) removed outlier: 5.557A pdb=" N GLY J3989 " --> pdb=" O SER J3985 " (cutoff:3.500A) Processing helix chain 'J' and resid 3994 through 4008 removed outlier: 3.654A pdb=" N VAL J4001 " --> pdb=" O GLY J3997 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N LEU J4004 " --> pdb=" O MET J4000 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N SER J4008 " --> pdb=" O LEU J4004 " (cutoff:3.500A) Processing helix chain 'J' and resid 4009 through 4028 removed outlier: 4.690A pdb=" N MET J4013 " --> pdb=" O ASN J4009 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N ILE J4014 " --> pdb=" O ASN J4010 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N PHE J4021 " --> pdb=" O PHE J4017 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N LEU J4024 " --> pdb=" O MET J4020 " (cutoff:3.500A) removed outlier: 4.054A pdb=" N LYS J4025 " --> pdb=" O PHE J4021 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N THR J4028 " --> pdb=" O LEU J4024 " (cutoff:3.500A) Processing helix chain 'J' and resid 4030 through 4035 Processing helix chain 'J' and resid 4046 through 4057 removed outlier: 3.529A pdb=" N MET J4053 " --> pdb=" O PHE J4049 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N GLU J4054 " --> pdb=" O HIS J4050 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N LYS J4057 " --> pdb=" O MET J4053 " (cutoff:3.500A) Processing helix chain 'J' and resid 4060 through 4069 Processing helix chain 'J' and resid 4081 through 4110 Proline residue: J4091 - end of helix removed outlier: 4.107A pdb=" N ASP J4094 " --> pdb=" O GLU J4090 " (cutoff:3.500A) removed outlier: 4.719A pdb=" N ILE J4095 " --> pdb=" O PRO J4091 " (cutoff:3.500A) removed outlier: 5.229A pdb=" N GLY J4096 " --> pdb=" O ALA J4092 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ASN J4098 " --> pdb=" O ASP J4094 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N VAL J4099 " --> pdb=" O ILE J4095 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N SER J4107 " --> pdb=" O LEU J4103 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N HIS J4109 " --> pdb=" O ASN J4105 " (cutoff:3.500A) Processing helix chain 'J' and resid 4113 through 4124 removed outlier: 4.129A pdb=" N GLN J4117 " --> pdb=" O ASP J4113 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N PHE J4119 " --> pdb=" O ARG J4115 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N GLU J4124 " --> pdb=" O LEU J4120 " (cutoff:3.500A) Processing helix chain 'J' and resid 4125 through 4135 removed outlier: 3.617A pdb=" N TYR J4129 " --> pdb=" O SER J4125 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N GLN J4131 " --> pdb=" O LEU J4127 " (cutoff:3.500A) Proline residue: J4132 - end of helix removed outlier: 6.036A pdb=" N GLY J4135 " --> pdb=" O GLN J4131 " (cutoff:3.500A) Processing helix chain 'J' and resid 4154 through 4164 removed outlier: 3.974A pdb=" N ARG J4158 " --> pdb=" O SER J4154 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N TRP J4161 " --> pdb=" O SER J4157 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N GLU J4162 " --> pdb=" O ARG J4158 " (cutoff:3.500A) Proline residue: J4164 - end of helix Processing helix chain 'J' and resid 4165 through 4180 removed outlier: 4.363A pdb=" N SER J4169 " --> pdb=" O GLN J4165 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N ARG J4171 " --> pdb=" O LYS J4167 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N ASP J4176 " --> pdb=" O GLN J4172 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N VAL J4177 " --> pdb=" O PHE J4173 " (cutoff:3.500A) removed outlier: 3.522A pdb=" N VAL J4178 " --> pdb=" O ILE J4174 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N ASN J4179 " --> pdb=" O PHE J4175 " (cutoff:3.500A) removed outlier: 5.473A pdb=" N GLU J4180 " --> pdb=" O ASP J4176 " (cutoff:3.500A) Processing helix chain 'J' and resid 4182 through 4207 removed outlier: 4.197A pdb=" N MET J4187 " --> pdb=" O GLU J4183 " (cutoff:3.500A) removed outlier: 5.279A pdb=" N GLU J4188 " --> pdb=" O LYS J4184 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ASP J4196 " --> pdb=" O ASN J4192 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N ILE J4198 " --> pdb=" O CYS J4194 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N PHE J4199 " --> pdb=" O GLU J4195 " (cutoff:3.500A) removed outlier: 3.643A pdb=" N GLN J4206 " --> pdb=" O GLN J4202 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N ILE J4207 " --> pdb=" O LEU J4203 " (cutoff:3.500A) Processing helix chain 'J' and resid 4486 through 4500 removed outlier: 3.602A pdb=" N PHE J4500 " --> pdb=" O PHE J4496 " (cutoff:3.500A) Processing helix chain 'J' and resid 4501 through 4520 removed outlier: 3.761A pdb=" N MET J4505 " --> pdb=" O TYR J4501 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N LEU J4506 " --> pdb=" O ASN J4502 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N PHE J4509 " --> pdb=" O MET J4505 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N ALA J4511 " --> pdb=" O ALA J4507 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N ASN J4515 " --> pdb=" O ALA J4511 " (cutoff:3.500A) removed outlier: 4.462A pdb=" N LEU J4519 " --> pdb=" O ASN J4515 " (cutoff:3.500A) removed outlier: 5.289A pdb=" N PHE J4520 " --> pdb=" O PHE J4516 " (cutoff:3.500A) Processing helix chain 'J' and resid 4568 through 4614 removed outlier: 5.160A pdb=" N THR J4572 " --> pdb=" O TYR J4568 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N THR J4581 " --> pdb=" O ALA J4577 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N ILE J4583 " --> pdb=" O LEU J4579 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N ILE J4588 " --> pdb=" O SER J4584 " (cutoff:3.500A) removed outlier: 4.406A pdb=" N VAL J4596 " --> pdb=" O TYR J4592 " (cutoff:3.500A) Proline residue: J4597 - end of helix removed outlier: 3.576A pdb=" N ARG J4603 " --> pdb=" O VAL J4599 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLU J4606 " --> pdb=" O LYS J4602 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N LYS J4610 " --> pdb=" O GLU J4606 " (cutoff:3.500A) Processing helix chain 'J' and resid 4626 through 4639 removed outlier: 3.954A pdb=" N ASP J4632 " --> pdb=" O LYS J4628 " (cutoff:3.500A) removed outlier: 5.613A pdb=" N ARG J4633 " --> pdb=" O GLY J4629 " (cutoff:3.500A) removed outlier: 5.977A pdb=" N LEU J4634 " --> pdb=" O GLN J4630 " (cutoff:3.500A) removed outlier: 5.503A pdb=" N VAL J4635 " --> pdb=" O TRP J4631 " (cutoff:3.500A) removed outlier: 4.647A pdb=" N ILE J4636 " --> pdb=" O ASP J4632 " (cutoff:3.500A) removed outlier: 4.549A pdb=" N ASN J4637 " --> pdb=" O ARG J4633 " (cutoff:3.500A) removed outlier: 4.814A pdb=" N THR J4638 " --> pdb=" O LEU J4634 " (cutoff:3.500A) removed outlier: 5.391A pdb=" N GLN J4639 " --> pdb=" O VAL J4635 " (cutoff:3.500A) Processing helix chain 'J' and resid 4649 through 4659 removed outlier: 3.774A pdb=" N VAL J4654 " --> pdb=" O VAL J4650 " (cutoff:3.500A) Processing helix chain 'J' and resid 4663 through 4672 Processing helix chain 'J' and resid 4696 through 4702 removed outlier: 4.926A pdb=" N ASN J4700 " --> pdb=" O SER J4696 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N SER J4701 " --> pdb=" O ALA J4697 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N ILE J4702 " --> pdb=" O VAL J4698 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 4696 through 4702' Processing helix chain 'J' and resid 4703 through 4717 removed outlier: 3.504A pdb=" N TRP J4709 " --> pdb=" O LYS J4705 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N VAL J4714 " --> pdb=" O LYS J4710 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N THR J4716 " --> pdb=" O GLY J4712 " (cutoff:3.500A) removed outlier: 4.096A pdb=" N ASP J4717 " --> pdb=" O VAL J4713 " (cutoff:3.500A) Processing helix chain 'J' and resid 4718 through 4736 removed outlier: 3.715A pdb=" N SER J4730 " --> pdb=" O TYR J4726 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N GLY J4733 " --> pdb=" O MET J4729 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N TYR J4735 " --> pdb=" O VAL J4731 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N ASN J4736 " --> pdb=" O LEU J4732 " (cutoff:3.500A) Processing helix chain 'J' and resid 4737 through 4750 removed outlier: 4.471A pdb=" N ALA J4741 " --> pdb=" O ASN J4737 " (cutoff:3.500A) removed outlier: 5.418A pdb=" N ALA J4742 " --> pdb=" O PHE J4738 " (cutoff:3.500A) removed outlier: 7.340A pdb=" N HIS J4743 " --> pdb=" O PHE J4739 " (cutoff:3.500A) removed outlier: 5.726A pdb=" N LEU J4744 " --> pdb=" O PHE J4740 " (cutoff:3.500A) removed outlier: 5.303A pdb=" N LEU J4745 " --> pdb=" O ALA J4741 " (cutoff:3.500A) removed outlier: 5.638A pdb=" N ASP J4746 " --> pdb=" O ALA J4742 " (cutoff:3.500A) removed outlier: 5.372A pdb=" N ILE J4747 " --> pdb=" O HIS J4743 " (cutoff:3.500A) removed outlier: 4.583A pdb=" N ALA J4748 " --> pdb=" O LEU J4744 " (cutoff:3.500A) removed outlier: 4.415A pdb=" N GLY J4750 " --> pdb=" O ASP J4746 " (cutoff:3.500A) Processing helix chain 'J' and resid 4751 through 4764 removed outlier: 3.971A pdb=" N ILE J4757 " --> pdb=" O THR J4753 " (cutoff:3.500A) removed outlier: 3.680A pdb=" N THR J4762 " --> pdb=" O LEU J4758 " (cutoff:3.500A) Processing helix chain 'J' and resid 4765 through 4789 removed outlier: 3.535A pdb=" N LEU J4770 " --> pdb=" O LYS J4766 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N VAL J4777 " --> pdb=" O GLY J4773 " (cutoff:3.500A) Processing helix chain 'J' and resid 4809 through 4824 removed outlier: 6.585A pdb=" N CYS J4813 " --> pdb=" O ASP J4809 " (cutoff:3.500A) removed outlier: 4.633A pdb=" N TYR J4814 " --> pdb=" O MET J4810 " (cutoff:3.500A) removed outlier: 3.765A pdb=" N PHE J4816 " --> pdb=" O THR J4812 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N TYR J4819 " --> pdb=" O MET J4815 " (cutoff:3.500A) removed outlier: 4.893A pdb=" N VAL J4822 " --> pdb=" O MET J4818 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N ARG J4823 " --> pdb=" O TYR J4819 " (cutoff:3.500A) Processing helix chain 'J' and resid 4840 through 4855 removed outlier: 3.611A pdb=" N ILE J4846 " --> pdb=" O ILE J4842 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N PHE J4852 " --> pdb=" O ASP J4848 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N PHE J4854 " --> pdb=" O THR J4850 " (cutoff:3.500A) Processing helix chain 'J' and resid 4859 through 4884 removed outlier: 3.696A pdb=" N ILE J4863 " --> pdb=" O LEU J4859 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N LEU J4866 " --> pdb=" O ILE J4862 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N ILE J4867 " --> pdb=" O ILE J4863 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N ASP J4869 " --> pdb=" O GLY J4865 " (cutoff:3.500A) removed outlier: 4.082A pdb=" N LEU J4874 " --> pdb=" O ALA J4870 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N ARG J4875 " --> pdb=" O PHE J4871 " (cutoff:3.500A) removed outlier: 4.788A pdb=" N GLN J4878 " --> pdb=" O LEU J4874 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N LYS J4882 " --> pdb=" O GLN J4878 " (cutoff:3.500A) Processing helix chain 'J' and resid 4895 through 4903 removed outlier: 5.368A pdb=" N PHE J4899 " --> pdb=" O GLY J4895 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N ASP J4900 " --> pdb=" O ASN J4896 " (cutoff:3.500A) removed outlier: 5.574A pdb=" N VAL J4902 " --> pdb=" O TYR J4898 " (cutoff:3.500A) Proline residue: J4903 - end of helix Processing helix chain 'J' and resid 4904 through 4911 removed outlier: 4.438A pdb=" N THR J4908 " --> pdb=" O HIS J4904 " (cutoff:3.500A) Processing helix chain 'J' and resid 4915 through 4929 removed outlier: 3.869A pdb=" N TYR J4919 " --> pdb=" O ASN J4915 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ILE J4927 " --> pdb=" O LEU J4923 " (cutoff:3.500A) Processing helix chain 'J' and resid 4935 through 4948 removed outlier: 4.038A pdb=" N TRP J4942 " --> pdb=" O GLU J4938 " (cutoff:3.500A) Processing helix chain 'J' and resid 4958 through 4963 removed outlier: 3.822A pdb=" N GLN J4962 " --> pdb=" O CYS J4958 " (cutoff:3.500A) Processing helix chain 'J' and resid 54 through 59 Proline residue: J 59 - end of helix No H-bonds generated for 'chain 'J' and resid 54 through 59' Processing helix chain 'J' and resid 4615 through 4620 Processing helix chain 'B' and resid 38 through 43 removed outlier: 3.741A pdb=" N ARG B 42 " --> pdb=" O SER B 38 " (cutoff:3.500A) Processing helix chain 'B' and resid 56 through 67 removed outlier: 4.210A pdb=" N ALA B 64 " --> pdb=" O GLU B 60 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N GLN B 65 " --> pdb=" O GLU B 61 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N MET B 66 " --> pdb=" O GLY B 62 " (cutoff:3.500A) removed outlier: 5.735A pdb=" N SER B 67 " --> pdb=" O ALA B 63 " (cutoff:3.500A) Processing helix chain 'B' and resid 77 through 82 removed outlier: 4.392A pdb=" N TYR B 82 " --> pdb=" O PRO B 78 " (cutoff:3.500A) Processing helix chain 'E' and resid 38 through 43 removed outlier: 3.741A pdb=" N ARG E 42 " --> pdb=" O SER E 38 " (cutoff:3.500A) Processing helix chain 'E' and resid 56 through 67 removed outlier: 4.210A pdb=" N ALA E 64 " --> pdb=" O GLU E 60 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N GLN E 65 " --> pdb=" O GLU E 61 " (cutoff:3.500A) removed outlier: 4.022A pdb=" N MET E 66 " --> pdb=" O GLY E 62 " (cutoff:3.500A) removed outlier: 5.735A pdb=" N SER E 67 " --> pdb=" O ALA E 63 " (cutoff:3.500A) Processing helix chain 'E' and resid 77 through 82 removed outlier: 4.392A pdb=" N TYR E 82 " --> pdb=" O PRO E 78 " (cutoff:3.500A) Processing helix chain 'H' and resid 38 through 43 removed outlier: 3.742A pdb=" N ARG H 42 " --> pdb=" O SER H 38 " (cutoff:3.500A) Processing helix chain 'H' and resid 56 through 67 removed outlier: 4.210A pdb=" N ALA H 64 " --> pdb=" O GLU H 60 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N GLN H 65 " --> pdb=" O GLU H 61 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N MET H 66 " --> pdb=" O GLY H 62 " (cutoff:3.500A) removed outlier: 5.735A pdb=" N SER H 67 " --> pdb=" O ALA H 63 " (cutoff:3.500A) Processing helix chain 'H' and resid 77 through 82 removed outlier: 4.392A pdb=" N TYR H 82 " --> pdb=" O PRO H 78 " (cutoff:3.500A) Processing helix chain 'K' and resid 38 through 43 removed outlier: 3.742A pdb=" N ARG K 42 " --> pdb=" O SER K 38 " (cutoff:3.500A) Processing helix chain 'K' and resid 56 through 67 removed outlier: 4.210A pdb=" N ALA K 64 " --> pdb=" O GLU K 60 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N GLN K 65 " --> pdb=" O GLU K 61 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N MET K 66 " --> pdb=" O GLY K 62 " (cutoff:3.500A) removed outlier: 5.735A pdb=" N SER K 67 " --> pdb=" O ALA K 63 " (cutoff:3.500A) Processing helix chain 'K' and resid 77 through 82 removed outlier: 4.392A pdb=" N TYR K 82 " --> pdb=" O PRO K 78 " (cutoff:3.500A) Processing helix chain 'C' and resid 6 through 22 removed outlier: 3.519A pdb=" N ILE C 10 " --> pdb=" O THR C 6 " (cutoff:3.500A) removed outlier: 5.111A pdb=" N LYS C 22 " --> pdb=" O SER C 18 " (cutoff:3.500A) Processing helix chain 'C' and resid 29 through 41 removed outlier: 4.008A pdb=" N LEU C 33 " --> pdb=" O THR C 29 " (cutoff:3.500A) removed outlier: 4.170A pdb=" N GLY C 41 " --> pdb=" O MET C 37 " (cutoff:3.500A) Processing helix chain 'C' and resid 45 through 57 removed outlier: 3.725A pdb=" N VAL C 56 " --> pdb=" O MET C 52 " (cutoff:3.500A) Processing helix chain 'C' and resid 65 through 77 removed outlier: 3.520A pdb=" N PHE C 69 " --> pdb=" O ASP C 65 " (cutoff:3.500A) removed outlier: 4.119A pdb=" N LYS C 76 " --> pdb=" O MET C 72 " (cutoff:3.500A) Processing helix chain 'C' and resid 84 through 95 removed outlier: 3.655A pdb=" N GLU C 88 " --> pdb=" O GLU C 84 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N VAL C 92 " --> pdb=" O GLU C 88 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N LYS C 95 " --> pdb=" O ARG C 91 " (cutoff:3.500A) Processing helix chain 'C' and resid 103 through 112 removed outlier: 4.619A pdb=" N ARG C 107 " --> pdb=" O ALA C 103 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N HIS C 108 " --> pdb=" O ALA C 104 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N THR C 111 " --> pdb=" O ARG C 107 " (cutoff:3.500A) removed outlier: 5.656A pdb=" N ASN C 112 " --> pdb=" O HIS C 108 " (cutoff:3.500A) Processing helix chain 'C' and resid 119 through 130 removed outlier: 6.056A pdb=" N ASP C 123 " --> pdb=" O ASP C 119 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N GLU C 124 " --> pdb=" O GLU C 120 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N ILE C 126 " --> pdb=" O VAL C 122 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N ALA C 129 " --> pdb=" O MET C 125 " (cutoff:3.500A) Processing helix chain 'C' and resid 138 through 145 removed outlier: 4.713A pdb=" N PHE C 142 " --> pdb=" O ASN C 138 " (cutoff:3.500A) removed outlier: 4.057A pdb=" N VAL C 143 " --> pdb=" O TYR C 139 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N GLN C 144 " --> pdb=" O GLU C 140 " (cutoff:3.500A) removed outlier: 4.730A pdb=" N MET C 145 " --> pdb=" O GLU C 141 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 138 through 145' Processing helix chain 'F' and resid 6 through 22 removed outlier: 3.518A pdb=" N ILE F 10 " --> pdb=" O THR F 6 " (cutoff:3.500A) removed outlier: 5.110A pdb=" N LYS F 22 " --> pdb=" O SER F 18 " (cutoff:3.500A) Processing helix chain 'F' and resid 29 through 41 removed outlier: 4.008A pdb=" N LEU F 33 " --> pdb=" O THR F 29 " (cutoff:3.500A) removed outlier: 4.170A pdb=" N GLY F 41 " --> pdb=" O MET F 37 " (cutoff:3.500A) Processing helix chain 'F' and resid 45 through 57 removed outlier: 3.724A pdb=" N VAL F 56 " --> pdb=" O MET F 52 " (cutoff:3.500A) Processing helix chain 'F' and resid 65 through 77 removed outlier: 3.520A pdb=" N PHE F 69 " --> pdb=" O ASP F 65 " (cutoff:3.500A) removed outlier: 4.119A pdb=" N LYS F 76 " --> pdb=" O MET F 72 " (cutoff:3.500A) Processing helix chain 'F' and resid 84 through 95 removed outlier: 3.655A pdb=" N GLU F 88 " --> pdb=" O GLU F 84 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N VAL F 92 " --> pdb=" O GLU F 88 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N LYS F 95 " --> pdb=" O ARG F 91 " (cutoff:3.500A) Processing helix chain 'F' and resid 103 through 112 removed outlier: 4.619A pdb=" N ARG F 107 " --> pdb=" O ALA F 103 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N HIS F 108 " --> pdb=" O ALA F 104 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N THR F 111 " --> pdb=" O ARG F 107 " (cutoff:3.500A) removed outlier: 5.657A pdb=" N ASN F 112 " --> pdb=" O HIS F 108 " (cutoff:3.500A) Processing helix chain 'F' and resid 119 through 130 removed outlier: 6.056A pdb=" N ASP F 123 " --> pdb=" O ASP F 119 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N GLU F 124 " --> pdb=" O GLU F 120 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N ILE F 126 " --> pdb=" O VAL F 122 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N ALA F 129 " --> pdb=" O MET F 125 " (cutoff:3.500A) Processing helix chain 'F' and resid 138 through 145 removed outlier: 4.713A pdb=" N PHE F 142 " --> pdb=" O ASN F 138 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N VAL F 143 " --> pdb=" O TYR F 139 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N GLN F 144 " --> pdb=" O GLU F 140 " (cutoff:3.500A) removed outlier: 4.730A pdb=" N MET F 145 " --> pdb=" O GLU F 141 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 138 through 145' Processing helix chain 'I' and resid 6 through 22 removed outlier: 3.519A pdb=" N ILE I 10 " --> pdb=" O THR I 6 " (cutoff:3.500A) removed outlier: 5.111A pdb=" N LYS I 22 " --> pdb=" O SER I 18 " (cutoff:3.500A) Processing helix chain 'I' and resid 29 through 41 removed outlier: 4.008A pdb=" N LEU I 33 " --> pdb=" O THR I 29 " (cutoff:3.500A) removed outlier: 4.170A pdb=" N GLY I 41 " --> pdb=" O MET I 37 " (cutoff:3.500A) Processing helix chain 'I' and resid 45 through 57 removed outlier: 3.725A pdb=" N VAL I 56 " --> pdb=" O MET I 52 " (cutoff:3.500A) Processing helix chain 'I' and resid 65 through 77 removed outlier: 3.520A pdb=" N PHE I 69 " --> pdb=" O ASP I 65 " (cutoff:3.500A) removed outlier: 4.120A pdb=" N LYS I 76 " --> pdb=" O MET I 72 " (cutoff:3.500A) Processing helix chain 'I' and resid 84 through 95 removed outlier: 3.654A pdb=" N GLU I 88 " --> pdb=" O GLU I 84 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N VAL I 92 " --> pdb=" O GLU I 88 " (cutoff:3.500A) removed outlier: 4.101A pdb=" N LYS I 95 " --> pdb=" O ARG I 91 " (cutoff:3.500A) Processing helix chain 'I' and resid 103 through 112 removed outlier: 4.619A pdb=" N ARG I 107 " --> pdb=" O ALA I 103 " (cutoff:3.500A) removed outlier: 4.583A pdb=" N HIS I 108 " --> pdb=" O ALA I 104 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N THR I 111 " --> pdb=" O ARG I 107 " (cutoff:3.500A) removed outlier: 5.656A pdb=" N ASN I 112 " --> pdb=" O HIS I 108 " (cutoff:3.500A) Processing helix chain 'I' and resid 119 through 130 removed outlier: 6.055A pdb=" N ASP I 123 " --> pdb=" O ASP I 119 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N GLU I 124 " --> pdb=" O GLU I 120 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N ILE I 126 " --> pdb=" O VAL I 122 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N ALA I 129 " --> pdb=" O MET I 125 " (cutoff:3.500A) Processing helix chain 'I' and resid 138 through 145 removed outlier: 4.713A pdb=" N PHE I 142 " --> pdb=" O ASN I 138 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N VAL I 143 " --> pdb=" O TYR I 139 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N GLN I 144 " --> pdb=" O GLU I 140 " (cutoff:3.500A) removed outlier: 4.730A pdb=" N MET I 145 " --> pdb=" O GLU I 141 " (cutoff:3.500A) No H-bonds generated for 'chain 'I' and resid 138 through 145' Processing helix chain 'L' and resid 6 through 22 removed outlier: 3.519A pdb=" N ILE L 10 " --> pdb=" O THR L 6 " (cutoff:3.500A) removed outlier: 5.111A pdb=" N LYS L 22 " --> pdb=" O SER L 18 " (cutoff:3.500A) Processing helix chain 'L' and resid 29 through 41 removed outlier: 4.007A pdb=" N LEU L 33 " --> pdb=" O THR L 29 " (cutoff:3.500A) removed outlier: 4.170A pdb=" N GLY L 41 " --> pdb=" O MET L 37 " (cutoff:3.500A) Processing helix chain 'L' and resid 45 through 57 removed outlier: 3.725A pdb=" N VAL L 56 " --> pdb=" O MET L 52 " (cutoff:3.500A) Processing helix chain 'L' and resid 65 through 77 removed outlier: 3.520A pdb=" N PHE L 69 " --> pdb=" O ASP L 65 " (cutoff:3.500A) removed outlier: 4.118A pdb=" N LYS L 76 " --> pdb=" O MET L 72 " (cutoff:3.500A) Processing helix chain 'L' and resid 84 through 95 removed outlier: 3.655A pdb=" N GLU L 88 " --> pdb=" O GLU L 84 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N VAL L 92 " --> pdb=" O GLU L 88 " (cutoff:3.500A) removed outlier: 4.102A pdb=" N LYS L 95 " --> pdb=" O ARG L 91 " (cutoff:3.500A) Processing helix chain 'L' and resid 103 through 112 removed outlier: 4.619A pdb=" N ARG L 107 " --> pdb=" O ALA L 103 " (cutoff:3.500A) removed outlier: 4.585A pdb=" N HIS L 108 " --> pdb=" O ALA L 104 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N THR L 111 " --> pdb=" O ARG L 107 " (cutoff:3.500A) removed outlier: 5.656A pdb=" N ASN L 112 " --> pdb=" O HIS L 108 " (cutoff:3.500A) Processing helix chain 'L' and resid 119 through 130 removed outlier: 6.056A pdb=" N ASP L 123 " --> pdb=" O ASP L 119 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N GLU L 124 " --> pdb=" O GLU L 120 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N ILE L 126 " --> pdb=" O VAL L 122 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N ALA L 129 " --> pdb=" O MET L 125 " (cutoff:3.500A) Processing helix chain 'L' and resid 138 through 145 removed outlier: 4.713A pdb=" N PHE L 142 " --> pdb=" O ASN L 138 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N VAL L 143 " --> pdb=" O TYR L 139 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N GLN L 144 " --> pdb=" O GLU L 140 " (cutoff:3.500A) removed outlier: 4.730A pdb=" N MET L 145 " --> pdb=" O GLU L 141 " (cutoff:3.500A) No H-bonds generated for 'chain 'L' and resid 138 through 145' Processing sheet with id= 1, first strand: chain 'A' and resid 47 through 52 removed outlier: 3.920A pdb=" N THR A 52 " --> pdb=" O LYS A 34 " (cutoff:3.500A) removed outlier: 6.501A pdb=" N LYS A 34 " --> pdb=" O THR A 52 " (cutoff:3.500A) removed outlier: 5.303A pdb=" N LEU A 22 " --> pdb=" O LEU A 37 " (cutoff:3.500A) removed outlier: 10.604A pdb=" N ALA A 39 " --> pdb=" O VAL A 20 " (cutoff:3.500A) removed outlier: 13.683A pdb=" N VAL A 20 " --> pdb=" O ALA A 39 " (cutoff:3.500A) removed outlier: 6.691A pdb=" N GLU A 19 " --> pdb=" O ILE A 217 " (cutoff:3.500A) Processing sheet with id= 2, first strand: chain 'A' and resid 67 through 70 removed outlier: 6.574A pdb=" N LEU A 120 " --> pdb=" O GLU A 70 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'A' and resid 160 through 165 No H-bonds generated for sheet with id= 3 Processing sheet with id= 4, first strand: chain 'A' and resid 193 through 196 removed outlier: 3.836A pdb=" N SER A 195 " --> pdb=" O HIS A 202 " (cutoff:3.500A) removed outlier: 4.364A pdb=" N HIS A 202 " --> pdb=" O SER A 195 " (cutoff:3.500A) Processing sheet with id= 5, first strand: chain 'A' and resid 233 through 238 removed outlier: 5.667A pdb=" N VAL A 233 " --> pdb=" O SER A 408 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N SER A 406 " --> pdb=" O ARG A 235 " (cutoff:3.500A) Processing sheet with id= 6, first strand: chain 'A' and resid 244 through 247 removed outlier: 3.663A pdb=" N HIS A 261 " --> pdb=" O THR A 246 " (cutoff:3.500A) Processing sheet with id= 7, first strand: chain 'A' and resid 276 through 279 removed outlier: 3.691A pdb=" N ARG A 298 " --> pdb=" O ARG A 276 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N GLU A 278 " --> pdb=" O ARG A 296 " (cutoff:3.500A) Processing sheet with id= 8, first strand: chain 'A' and resid 306 through 309 Processing sheet with id= 9, first strand: chain 'A' and resid 329 through 333 removed outlier: 3.940A pdb=" N GLN A 364 " --> pdb=" O THR A 330 " (cutoff:3.500A) Processing sheet with id= 10, first strand: chain 'A' and resid 371 through 376 removed outlier: 4.890A pdb=" N LYS A 390 " --> pdb=" O GLN A 375 " (cutoff:3.500A) Processing sheet with id= 11, first strand: chain 'A' and resid 723 through 726 removed outlier: 3.665A pdb=" N ARG A 694 " --> pdb=" O SER A 793 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N GLY A 696 " --> pdb=" O VAL A 791 " (cutoff:3.500A) removed outlier: 4.197A pdb=" N VAL A 792 " --> pdb=" O MET A 655 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N PHE A 794 " --> pdb=" O SER A 653 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N SER A 653 " --> pdb=" O PHE A 794 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N GLN A 645 " --> pdb=" O HIS A1631 " (cutoff:3.500A) removed outlier: 4.690A pdb=" N VAL A 649 " --> pdb=" O PHE A1627 " (cutoff:3.500A) removed outlier: 6.143A pdb=" N LEU A1625 " --> pdb=" O HIS A 651 " (cutoff:3.500A) Processing sheet with id= 12, first strand: chain 'A' and resid 752 through 761 removed outlier: 4.222A pdb=" N ASP A 753 " --> pdb=" O VAL A 679 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N LEU A 761 " --> pdb=" O LYS A 671 " (cutoff:3.500A) removed outlier: 7.303A pdb=" N LYS A 671 " --> pdb=" O LEU A 761 " (cutoff:3.500A) removed outlier: 4.205A pdb=" N GLU A 676 " --> pdb=" O LEU A 803 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N LEU A 803 " --> pdb=" O GLU A 676 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N MET A 678 " --> pdb=" O ARG A 801 " (cutoff:3.500A) removed outlier: 7.001A pdb=" N LYS A 799 " --> pdb=" O ASP A 680 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N PHE A 802 " --> pdb=" O TRP A1617 " (cutoff:3.500A) removed outlier: 4.677A pdb=" N TRP A1617 " --> pdb=" O PHE A 802 " (cutoff:3.500A) removed outlier: 4.266A pdb=" N LEU A1618 " --> pdb=" O GLU A1613 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N GLN A1620 " --> pdb=" O ILE A1611 " (cutoff:3.500A) Processing sheet with id= 13, first strand: chain 'A' and resid 1135 through 1138 removed outlier: 6.829A pdb=" N ASP A1112 " --> pdb=" O GLY A1208 " (cutoff:3.500A) removed outlier: 4.316A pdb=" N ALA A1090 " --> pdb=" O PRO A1203 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N CYS A1205 " --> pdb=" O PHE A1088 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N ARG A1086 " --> pdb=" O LEU A1207 " (cutoff:3.500A) removed outlier: 5.713A pdb=" N ILE A1087 " --> pdb=" O SER A1252 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N ARG A1089 " --> pdb=" O TRP A1250 " (cutoff:3.500A) removed outlier: 7.043A pdb=" N MET A1249 " --> pdb=" O PHE A1603 " (cutoff:3.500A) Processing sheet with id= 14, first strand: chain 'A' and resid 1142 through 1146 removed outlier: 8.298A pdb=" N ALA A1142 " --> pdb=" O HIS A1151 " (cutoff:3.500A) removed outlier: 4.503A pdb=" N HIS A1151 " --> pdb=" O ALA A1142 " (cutoff:3.500A) removed outlier: 6.181A pdb=" N ARG A1144 " --> pdb=" O ASN A1149 " (cutoff:3.500A) removed outlier: 4.078A pdb=" N ASN A1149 " --> pdb=" O ARG A1144 " (cutoff:3.500A) removed outlier: 5.957A pdb=" N HIS A1146 " --> pdb=" O GLN A1147 " (cutoff:3.500A) Processing sheet with id= 15, first strand: chain 'A' and resid 1171 through 1177 removed outlier: 4.427A pdb=" N THR A1172 " --> pdb=" O ASP A1167 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ASP A1167 " --> pdb=" O THR A1172 " (cutoff:3.500A) removed outlier: 4.513A pdb=" N GLY A1163 " --> pdb=" O THR A1176 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N ASP A1160 " --> pdb=" O ALA A1107 " (cutoff:3.500A) removed outlier: 6.023A pdb=" N PHE A1105 " --> pdb=" O VAL A1162 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N PHE A1103 " --> pdb=" O CYS A1164 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N TRP A1101 " --> pdb=" O VAL A1166 " (cutoff:3.500A) removed outlier: 5.639A pdb=" N GLY A1099 " --> pdb=" O MET A1168 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N GLU A1104 " --> pdb=" O ASN A1216 " (cutoff:3.500A) removed outlier: 6.723A pdb=" N VAL A1212 " --> pdb=" O VAL A1108 " (cutoff:3.500A) Processing sheet with id= 16, first strand: chain 'A' and resid 1256 through 1260 removed outlier: 3.878A pdb=" N VAL A1594 " --> pdb=" O LEU A1259 " (cutoff:3.500A) removed outlier: 6.576A pdb=" N LEU A1591 " --> pdb=" O SER A1305 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N SER A1305 " --> pdb=" O LEU A1591 " (cutoff:3.500A) removed outlier: 5.758A pdb=" N PHE A1301 " --> pdb=" O LEU A1595 " (cutoff:3.500A) removed outlier: 9.267A pdb=" N SER A1597 " --> pdb=" O ILE A1299 " (cutoff:3.500A) removed outlier: 13.863A pdb=" N ILE A1299 " --> pdb=" O SER A1597 " (cutoff:3.500A) Processing sheet with id= 17, first strand: chain 'A' and resid 1268 through 1274 removed outlier: 3.871A pdb=" N GLU A1269 " --> pdb=" O GLY A1291 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N GLY A1291 " --> pdb=" O GLU A1269 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N THR A1271 " --> pdb=" O SER A1289 " (cutoff:3.500A) removed outlier: 3.979A pdb=" N SER A1289 " --> pdb=" O THR A1271 " (cutoff:3.500A) removed outlier: 5.614A pdb=" N THR A1286 " --> pdb=" O GLU A1556 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N GLU A1556 " --> pdb=" O THR A1286 " (cutoff:3.500A) removed outlier: 5.554A pdb=" N LYS A1288 " --> pdb=" O GLN A1554 " (cutoff:3.500A) removed outlier: 6.707A pdb=" N PHE A1290 " --> pdb=" O VAL A1552 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N VAL A1552 " --> pdb=" O PHE A1290 " (cutoff:3.500A) removed outlier: 7.662A pdb=" N VAL A1552 " --> pdb=" O PHE A1433 " (cutoff:3.500A) removed outlier: 4.339A pdb=" N PHE A1433 " --> pdb=" O VAL A1552 " (cutoff:3.500A) removed outlier: 3.882A pdb=" N GLU A1556 " --> pdb=" O SER A1429 " (cutoff:3.500A) removed outlier: 6.791A pdb=" N SER A1429 " --> pdb=" O GLU A1556 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N TYR A1426 " --> pdb=" O VAL A1510 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N VAL A1510 " --> pdb=" O TYR A1426 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N TYR A1428 " --> pdb=" O GLY A1508 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N GLU A1506 " --> pdb=" O VAL A1430 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N ILE A1432 " --> pdb=" O GLY A1504 " (cutoff:3.500A) Processing sheet with id= 18, first strand: chain 'A' and resid 1486 through 1490 No H-bonds generated for sheet with id= 18 Processing sheet with id= 19, first strand: chain 'A' and resid 1762 through 1765 removed outlier: 4.854A pdb=" N SER A1779 " --> pdb=" O GLN A1762 " (cutoff:3.500A) Processing sheet with id= 20, first strand: chain 'A' and resid 4794 through 4797 No H-bonds generated for sheet with id= 20 Processing sheet with id= 21, first strand: chain 'A' and resid 1441 through 1445 Processing sheet with id= 22, first strand: chain 'D' and resid 47 through 52 removed outlier: 3.920A pdb=" N THR D 52 " --> pdb=" O LYS D 34 " (cutoff:3.500A) removed outlier: 6.500A pdb=" N LYS D 34 " --> pdb=" O THR D 52 " (cutoff:3.500A) removed outlier: 5.302A pdb=" N LEU D 22 " --> pdb=" O LEU D 37 " (cutoff:3.500A) removed outlier: 10.604A pdb=" N ALA D 39 " --> pdb=" O VAL D 20 " (cutoff:3.500A) removed outlier: 13.684A pdb=" N VAL D 20 " --> pdb=" O ALA D 39 " (cutoff:3.500A) removed outlier: 6.691A pdb=" N GLU D 19 " --> pdb=" O ILE D 217 " (cutoff:3.500A) Processing sheet with id= 23, first strand: chain 'D' and resid 67 through 70 removed outlier: 6.574A pdb=" N LEU D 120 " --> pdb=" O GLU D 70 " (cutoff:3.500A) Processing sheet with id= 24, first strand: chain 'D' and resid 160 through 165 No H-bonds generated for sheet with id= 24 Processing sheet with id= 25, first strand: chain 'D' and resid 193 through 196 removed outlier: 3.836A pdb=" N SER D 195 " --> pdb=" O HIS D 202 " (cutoff:3.500A) removed outlier: 4.364A pdb=" N HIS D 202 " --> pdb=" O SER D 195 " (cutoff:3.500A) Processing sheet with id= 26, first strand: chain 'D' and resid 233 through 238 removed outlier: 5.667A pdb=" N VAL D 233 " --> pdb=" O SER D 408 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N SER D 406 " --> pdb=" O ARG D 235 " (cutoff:3.500A) Processing sheet with id= 27, first strand: chain 'D' and resid 244 through 247 removed outlier: 3.663A pdb=" N HIS D 261 " --> pdb=" O THR D 246 " (cutoff:3.500A) Processing sheet with id= 28, first strand: chain 'D' and resid 276 through 279 removed outlier: 3.691A pdb=" N ARG D 298 " --> pdb=" O ARG D 276 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N GLU D 278 " --> pdb=" O ARG D 296 " (cutoff:3.500A) Processing sheet with id= 29, first strand: chain 'D' and resid 306 through 309 Processing sheet with id= 30, first strand: chain 'D' and resid 329 through 333 removed outlier: 3.940A pdb=" N GLN D 364 " --> pdb=" O THR D 330 " (cutoff:3.500A) Processing sheet with id= 31, first strand: chain 'D' and resid 371 through 376 removed outlier: 4.890A pdb=" N LYS D 390 " --> pdb=" O GLN D 375 " (cutoff:3.500A) Processing sheet with id= 32, first strand: chain 'D' and resid 723 through 726 removed outlier: 3.665A pdb=" N ARG D 694 " --> pdb=" O SER D 793 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N GLY D 696 " --> pdb=" O VAL D 791 " (cutoff:3.500A) removed outlier: 4.197A pdb=" N VAL D 792 " --> pdb=" O MET D 655 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N PHE D 794 " --> pdb=" O SER D 653 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N SER D 653 " --> pdb=" O PHE D 794 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N GLN D 645 " --> pdb=" O HIS D1631 " (cutoff:3.500A) removed outlier: 4.690A pdb=" N VAL D 649 " --> pdb=" O PHE D1627 " (cutoff:3.500A) removed outlier: 6.144A pdb=" N LEU D1625 " --> pdb=" O HIS D 651 " (cutoff:3.500A) Processing sheet with id= 33, first strand: chain 'D' and resid 752 through 761 removed outlier: 4.222A pdb=" N ASP D 753 " --> pdb=" O VAL D 679 " (cutoff:3.500A) removed outlier: 3.803A pdb=" N LEU D 761 " --> pdb=" O LYS D 671 " (cutoff:3.500A) removed outlier: 7.304A pdb=" N LYS D 671 " --> pdb=" O LEU D 761 " (cutoff:3.500A) removed outlier: 4.205A pdb=" N GLU D 676 " --> pdb=" O LEU D 803 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N LEU D 803 " --> pdb=" O GLU D 676 " (cutoff:3.500A) removed outlier: 3.999A pdb=" N MET D 678 " --> pdb=" O ARG D 801 " (cutoff:3.500A) removed outlier: 7.000A pdb=" N LYS D 799 " --> pdb=" O ASP D 680 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N PHE D 802 " --> pdb=" O TRP D1617 " (cutoff:3.500A) removed outlier: 4.677A pdb=" N TRP D1617 " --> pdb=" O PHE D 802 " (cutoff:3.500A) removed outlier: 4.266A pdb=" N LEU D1618 " --> pdb=" O GLU D1613 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N GLN D1620 " --> pdb=" O ILE D1611 " (cutoff:3.500A) Processing sheet with id= 34, first strand: chain 'D' and resid 1135 through 1138 removed outlier: 6.829A pdb=" N ASP D1112 " --> pdb=" O GLY D1208 " (cutoff:3.500A) removed outlier: 4.316A pdb=" N ALA D1090 " --> pdb=" O PRO D1203 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N CYS D1205 " --> pdb=" O PHE D1088 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N ARG D1086 " --> pdb=" O LEU D1207 " (cutoff:3.500A) removed outlier: 5.713A pdb=" N ILE D1087 " --> pdb=" O SER D1252 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N ARG D1089 " --> pdb=" O TRP D1250 " (cutoff:3.500A) removed outlier: 7.043A pdb=" N MET D1249 " --> pdb=" O PHE D1603 " (cutoff:3.500A) Processing sheet with id= 35, first strand: chain 'D' and resid 1142 through 1146 removed outlier: 8.298A pdb=" N ALA D1142 " --> pdb=" O HIS D1151 " (cutoff:3.500A) removed outlier: 4.503A pdb=" N HIS D1151 " --> pdb=" O ALA D1142 " (cutoff:3.500A) removed outlier: 6.181A pdb=" N ARG D1144 " --> pdb=" O ASN D1149 " (cutoff:3.500A) removed outlier: 4.078A pdb=" N ASN D1149 " --> pdb=" O ARG D1144 " (cutoff:3.500A) removed outlier: 5.957A pdb=" N HIS D1146 " --> pdb=" O GLN D1147 " (cutoff:3.500A) Processing sheet with id= 36, first strand: chain 'D' and resid 1171 through 1177 removed outlier: 4.427A pdb=" N THR D1172 " --> pdb=" O ASP D1167 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ASP D1167 " --> pdb=" O THR D1172 " (cutoff:3.500A) removed outlier: 4.513A pdb=" N GLY D1163 " --> pdb=" O THR D1176 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N ASP D1160 " --> pdb=" O ALA D1107 " (cutoff:3.500A) removed outlier: 6.023A pdb=" N PHE D1105 " --> pdb=" O VAL D1162 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N PHE D1103 " --> pdb=" O CYS D1164 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N TRP D1101 " --> pdb=" O VAL D1166 " (cutoff:3.500A) removed outlier: 5.639A pdb=" N GLY D1099 " --> pdb=" O MET D1168 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N GLU D1104 " --> pdb=" O ASN D1216 " (cutoff:3.500A) removed outlier: 6.723A pdb=" N VAL D1212 " --> pdb=" O VAL D1108 " (cutoff:3.500A) Processing sheet with id= 37, first strand: chain 'D' and resid 1256 through 1260 removed outlier: 3.878A pdb=" N VAL D1594 " --> pdb=" O LEU D1259 " (cutoff:3.500A) removed outlier: 6.576A pdb=" N LEU D1591 " --> pdb=" O SER D1305 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N SER D1305 " --> pdb=" O LEU D1591 " (cutoff:3.500A) removed outlier: 5.758A pdb=" N PHE D1301 " --> pdb=" O LEU D1595 " (cutoff:3.500A) removed outlier: 9.267A pdb=" N SER D1597 " --> pdb=" O ILE D1299 " (cutoff:3.500A) removed outlier: 13.863A pdb=" N ILE D1299 " --> pdb=" O SER D1597 " (cutoff:3.500A) Processing sheet with id= 38, first strand: chain 'D' and resid 1268 through 1274 removed outlier: 3.871A pdb=" N GLU D1269 " --> pdb=" O GLY D1291 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N GLY D1291 " --> pdb=" O GLU D1269 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N THR D1271 " --> pdb=" O SER D1289 " (cutoff:3.500A) removed outlier: 3.979A pdb=" N SER D1289 " --> pdb=" O THR D1271 " (cutoff:3.500A) removed outlier: 5.614A pdb=" N THR D1286 " --> pdb=" O GLU D1556 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N GLU D1556 " --> pdb=" O THR D1286 " (cutoff:3.500A) removed outlier: 5.554A pdb=" N LYS D1288 " --> pdb=" O GLN D1554 " (cutoff:3.500A) removed outlier: 6.708A pdb=" N PHE D1290 " --> pdb=" O VAL D1552 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N VAL D1552 " --> pdb=" O PHE D1290 " (cutoff:3.500A) removed outlier: 7.662A pdb=" N VAL D1552 " --> pdb=" O PHE D1433 " (cutoff:3.500A) removed outlier: 4.339A pdb=" N PHE D1433 " --> pdb=" O VAL D1552 " (cutoff:3.500A) removed outlier: 3.882A pdb=" N GLU D1556 " --> pdb=" O SER D1429 " (cutoff:3.500A) removed outlier: 6.790A pdb=" N SER D1429 " --> pdb=" O GLU D1556 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N TYR D1426 " --> pdb=" O VAL D1510 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N VAL D1510 " --> pdb=" O TYR D1426 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N TYR D1428 " --> pdb=" O GLY D1508 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N GLU D1506 " --> pdb=" O VAL D1430 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N ILE D1432 " --> pdb=" O GLY D1504 " (cutoff:3.500A) Processing sheet with id= 39, first strand: chain 'D' and resid 1486 through 1490 No H-bonds generated for sheet with id= 39 Processing sheet with id= 40, first strand: chain 'D' and resid 1762 through 1765 removed outlier: 4.854A pdb=" N SER D1779 " --> pdb=" O GLN D1762 " (cutoff:3.500A) Processing sheet with id= 41, first strand: chain 'D' and resid 4794 through 4797 No H-bonds generated for sheet with id= 41 Processing sheet with id= 42, first strand: chain 'D' and resid 1441 through 1445 Processing sheet with id= 43, first strand: chain 'G' and resid 47 through 52 removed outlier: 3.920A pdb=" N THR G 52 " --> pdb=" O LYS G 34 " (cutoff:3.500A) removed outlier: 6.501A pdb=" N LYS G 34 " --> pdb=" O THR G 52 " (cutoff:3.500A) removed outlier: 5.302A pdb=" N LEU G 22 " --> pdb=" O LEU G 37 " (cutoff:3.500A) removed outlier: 10.604A pdb=" N ALA G 39 " --> pdb=" O VAL G 20 " (cutoff:3.500A) removed outlier: 13.684A pdb=" N VAL G 20 " --> pdb=" O ALA G 39 " (cutoff:3.500A) removed outlier: 6.691A pdb=" N GLU G 19 " --> pdb=" O ILE G 217 " (cutoff:3.500A) Processing sheet with id= 44, first strand: chain 'G' and resid 67 through 70 removed outlier: 6.573A pdb=" N LEU G 120 " --> pdb=" O GLU G 70 " (cutoff:3.500A) Processing sheet with id= 45, first strand: chain 'G' and resid 160 through 165 No H-bonds generated for sheet with id= 45 Processing sheet with id= 46, first strand: chain 'G' and resid 193 through 196 removed outlier: 3.836A pdb=" N SER G 195 " --> pdb=" O HIS G 202 " (cutoff:3.500A) removed outlier: 4.365A pdb=" N HIS G 202 " --> pdb=" O SER G 195 " (cutoff:3.500A) Processing sheet with id= 47, first strand: chain 'G' and resid 233 through 238 removed outlier: 5.667A pdb=" N VAL G 233 " --> pdb=" O SER G 408 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N SER G 406 " --> pdb=" O ARG G 235 " (cutoff:3.500A) Processing sheet with id= 48, first strand: chain 'G' and resid 244 through 247 removed outlier: 3.663A pdb=" N HIS G 261 " --> pdb=" O THR G 246 " (cutoff:3.500A) Processing sheet with id= 49, first strand: chain 'G' and resid 276 through 279 removed outlier: 3.691A pdb=" N ARG G 298 " --> pdb=" O ARG G 276 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N GLU G 278 " --> pdb=" O ARG G 296 " (cutoff:3.500A) Processing sheet with id= 50, first strand: chain 'G' and resid 306 through 309 Processing sheet with id= 51, first strand: chain 'G' and resid 329 through 333 removed outlier: 3.940A pdb=" N GLN G 364 " --> pdb=" O THR G 330 " (cutoff:3.500A) Processing sheet with id= 52, first strand: chain 'G' and resid 371 through 376 removed outlier: 4.891A pdb=" N LYS G 390 " --> pdb=" O GLN G 375 " (cutoff:3.500A) Processing sheet with id= 53, first strand: chain 'G' and resid 723 through 726 removed outlier: 3.665A pdb=" N ARG G 694 " --> pdb=" O SER G 793 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N GLY G 696 " --> pdb=" O VAL G 791 " (cutoff:3.500A) removed outlier: 4.197A pdb=" N VAL G 792 " --> pdb=" O MET G 655 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N PHE G 794 " --> pdb=" O SER G 653 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N SER G 653 " --> pdb=" O PHE G 794 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N GLN G 645 " --> pdb=" O HIS G1631 " (cutoff:3.500A) removed outlier: 4.690A pdb=" N VAL G 649 " --> pdb=" O PHE G1627 " (cutoff:3.500A) removed outlier: 6.144A pdb=" N LEU G1625 " --> pdb=" O HIS G 651 " (cutoff:3.500A) Processing sheet with id= 54, first strand: chain 'G' and resid 752 through 761 removed outlier: 4.222A pdb=" N ASP G 753 " --> pdb=" O VAL G 679 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N LEU G 761 " --> pdb=" O LYS G 671 " (cutoff:3.500A) removed outlier: 7.303A pdb=" N LYS G 671 " --> pdb=" O LEU G 761 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N GLU G 676 " --> pdb=" O LEU G 803 " (cutoff:3.500A) removed outlier: 3.660A pdb=" N LEU G 803 " --> pdb=" O GLU G 676 " (cutoff:3.500A) removed outlier: 3.999A pdb=" N MET G 678 " --> pdb=" O ARG G 801 " (cutoff:3.500A) removed outlier: 7.001A pdb=" N LYS G 799 " --> pdb=" O ASP G 680 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N PHE G 802 " --> pdb=" O TRP G1617 " (cutoff:3.500A) removed outlier: 4.677A pdb=" N TRP G1617 " --> pdb=" O PHE G 802 " (cutoff:3.500A) removed outlier: 4.266A pdb=" N LEU G1618 " --> pdb=" O GLU G1613 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N GLN G1620 " --> pdb=" O ILE G1611 " (cutoff:3.500A) Processing sheet with id= 55, first strand: chain 'G' and resid 1135 through 1138 removed outlier: 6.829A pdb=" N ASP G1112 " --> pdb=" O GLY G1208 " (cutoff:3.500A) removed outlier: 4.315A pdb=" N ALA G1090 " --> pdb=" O PRO G1203 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N CYS G1205 " --> pdb=" O PHE G1088 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N ARG G1086 " --> pdb=" O LEU G1207 " (cutoff:3.500A) removed outlier: 5.713A pdb=" N ILE G1087 " --> pdb=" O SER G1252 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N ARG G1089 " --> pdb=" O TRP G1250 " (cutoff:3.500A) removed outlier: 7.043A pdb=" N MET G1249 " --> pdb=" O PHE G1603 " (cutoff:3.500A) Processing sheet with id= 56, first strand: chain 'G' and resid 1142 through 1146 removed outlier: 8.299A pdb=" N ALA G1142 " --> pdb=" O HIS G1151 " (cutoff:3.500A) removed outlier: 4.502A pdb=" N HIS G1151 " --> pdb=" O ALA G1142 " (cutoff:3.500A) removed outlier: 6.182A pdb=" N ARG G1144 " --> pdb=" O ASN G1149 " (cutoff:3.500A) removed outlier: 4.078A pdb=" N ASN G1149 " --> pdb=" O ARG G1144 " (cutoff:3.500A) removed outlier: 5.957A pdb=" N HIS G1146 " --> pdb=" O GLN G1147 " (cutoff:3.500A) Processing sheet with id= 57, first strand: chain 'G' and resid 1171 through 1177 removed outlier: 4.426A pdb=" N THR G1172 " --> pdb=" O ASP G1167 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ASP G1167 " --> pdb=" O THR G1172 " (cutoff:3.500A) removed outlier: 4.513A pdb=" N GLY G1163 " --> pdb=" O THR G1176 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N ASP G1160 " --> pdb=" O ALA G1107 " (cutoff:3.500A) removed outlier: 6.024A pdb=" N PHE G1105 " --> pdb=" O VAL G1162 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N PHE G1103 " --> pdb=" O CYS G1164 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N TRP G1101 " --> pdb=" O VAL G1166 " (cutoff:3.500A) removed outlier: 5.639A pdb=" N GLY G1099 " --> pdb=" O MET G1168 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N GLU G1104 " --> pdb=" O ASN G1216 " (cutoff:3.500A) removed outlier: 6.723A pdb=" N VAL G1212 " --> pdb=" O VAL G1108 " (cutoff:3.500A) Processing sheet with id= 58, first strand: chain 'G' and resid 1256 through 1260 removed outlier: 3.878A pdb=" N VAL G1594 " --> pdb=" O LEU G1259 " (cutoff:3.500A) removed outlier: 6.577A pdb=" N LEU G1591 " --> pdb=" O SER G1305 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N SER G1305 " --> pdb=" O LEU G1591 " (cutoff:3.500A) removed outlier: 5.759A pdb=" N PHE G1301 " --> pdb=" O LEU G1595 " (cutoff:3.500A) removed outlier: 9.268A pdb=" N SER G1597 " --> pdb=" O ILE G1299 " (cutoff:3.500A) removed outlier: 13.862A pdb=" N ILE G1299 " --> pdb=" O SER G1597 " (cutoff:3.500A) Processing sheet with id= 59, first strand: chain 'G' and resid 1268 through 1274 removed outlier: 3.871A pdb=" N GLU G1269 " --> pdb=" O GLY G1291 " (cutoff:3.500A) removed outlier: 3.899A pdb=" N GLY G1291 " --> pdb=" O GLU G1269 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N THR G1271 " --> pdb=" O SER G1289 " (cutoff:3.500A) removed outlier: 3.979A pdb=" N SER G1289 " --> pdb=" O THR G1271 " (cutoff:3.500A) removed outlier: 5.614A pdb=" N THR G1286 " --> pdb=" O GLU G1556 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N GLU G1556 " --> pdb=" O THR G1286 " (cutoff:3.500A) removed outlier: 5.554A pdb=" N LYS G1288 " --> pdb=" O GLN G1554 " (cutoff:3.500A) removed outlier: 6.707A pdb=" N PHE G1290 " --> pdb=" O VAL G1552 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N VAL G1552 " --> pdb=" O PHE G1290 " (cutoff:3.500A) removed outlier: 7.661A pdb=" N VAL G1552 " --> pdb=" O PHE G1433 " (cutoff:3.500A) removed outlier: 4.340A pdb=" N PHE G1433 " --> pdb=" O VAL G1552 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N GLU G1556 " --> pdb=" O SER G1429 " (cutoff:3.500A) removed outlier: 6.791A pdb=" N SER G1429 " --> pdb=" O GLU G1556 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N TYR G1426 " --> pdb=" O VAL G1510 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N VAL G1510 " --> pdb=" O TYR G1426 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N TYR G1428 " --> pdb=" O GLY G1508 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N GLU G1506 " --> pdb=" O VAL G1430 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N ILE G1432 " --> pdb=" O GLY G1504 " (cutoff:3.500A) Processing sheet with id= 60, first strand: chain 'G' and resid 1486 through 1490 No H-bonds generated for sheet with id= 60 Processing sheet with id= 61, first strand: chain 'G' and resid 1762 through 1765 removed outlier: 4.854A pdb=" N SER G1779 " --> pdb=" O GLN G1762 " (cutoff:3.500A) Processing sheet with id= 62, first strand: chain 'G' and resid 4794 through 4797 No H-bonds generated for sheet with id= 62 Processing sheet with id= 63, first strand: chain 'G' and resid 1441 through 1445 Processing sheet with id= 64, first strand: chain 'J' and resid 47 through 52 removed outlier: 3.919A pdb=" N THR J 52 " --> pdb=" O LYS J 34 " (cutoff:3.500A) removed outlier: 6.501A pdb=" N LYS J 34 " --> pdb=" O THR J 52 " (cutoff:3.500A) removed outlier: 5.303A pdb=" N LEU J 22 " --> pdb=" O LEU J 37 " (cutoff:3.500A) removed outlier: 10.605A pdb=" N ALA J 39 " --> pdb=" O VAL J 20 " (cutoff:3.500A) removed outlier: 13.683A pdb=" N VAL J 20 " --> pdb=" O ALA J 39 " (cutoff:3.500A) removed outlier: 6.691A pdb=" N GLU J 19 " --> pdb=" O ILE J 217 " (cutoff:3.500A) Processing sheet with id= 65, first strand: chain 'J' and resid 67 through 70 removed outlier: 6.574A pdb=" N LEU J 120 " --> pdb=" O GLU J 70 " (cutoff:3.500A) Processing sheet with id= 66, first strand: chain 'J' and resid 160 through 165 No H-bonds generated for sheet with id= 66 Processing sheet with id= 67, first strand: chain 'J' and resid 193 through 196 removed outlier: 3.836A pdb=" N SER J 195 " --> pdb=" O HIS J 202 " (cutoff:3.500A) removed outlier: 4.364A pdb=" N HIS J 202 " --> pdb=" O SER J 195 " (cutoff:3.500A) Processing sheet with id= 68, first strand: chain 'J' and resid 233 through 238 removed outlier: 5.667A pdb=" N VAL J 233 " --> pdb=" O SER J 408 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N SER J 406 " --> pdb=" O ARG J 235 " (cutoff:3.500A) Processing sheet with id= 69, first strand: chain 'J' and resid 244 through 247 removed outlier: 3.663A pdb=" N HIS J 261 " --> pdb=" O THR J 246 " (cutoff:3.500A) Processing sheet with id= 70, first strand: chain 'J' and resid 276 through 279 removed outlier: 3.692A pdb=" N ARG J 298 " --> pdb=" O ARG J 276 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N GLU J 278 " --> pdb=" O ARG J 296 " (cutoff:3.500A) Processing sheet with id= 71, first strand: chain 'J' and resid 306 through 309 Processing sheet with id= 72, first strand: chain 'J' and resid 329 through 333 removed outlier: 3.939A pdb=" N GLN J 364 " --> pdb=" O THR J 330 " (cutoff:3.500A) Processing sheet with id= 73, first strand: chain 'J' and resid 371 through 376 removed outlier: 4.891A pdb=" N LYS J 390 " --> pdb=" O GLN J 375 " (cutoff:3.500A) Processing sheet with id= 74, first strand: chain 'J' and resid 723 through 726 removed outlier: 3.665A pdb=" N ARG J 694 " --> pdb=" O SER J 793 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N GLY J 696 " --> pdb=" O VAL J 791 " (cutoff:3.500A) removed outlier: 4.197A pdb=" N VAL J 792 " --> pdb=" O MET J 655 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N PHE J 794 " --> pdb=" O SER J 653 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N SER J 653 " --> pdb=" O PHE J 794 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N GLN J 645 " --> pdb=" O HIS J1631 " (cutoff:3.500A) removed outlier: 4.690A pdb=" N VAL J 649 " --> pdb=" O PHE J1627 " (cutoff:3.500A) removed outlier: 6.143A pdb=" N LEU J1625 " --> pdb=" O HIS J 651 " (cutoff:3.500A) Processing sheet with id= 75, first strand: chain 'J' and resid 752 through 761 removed outlier: 4.222A pdb=" N ASP J 753 " --> pdb=" O VAL J 679 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N LEU J 761 " --> pdb=" O LYS J 671 " (cutoff:3.500A) removed outlier: 7.304A pdb=" N LYS J 671 " --> pdb=" O LEU J 761 " (cutoff:3.500A) removed outlier: 4.205A pdb=" N GLU J 676 " --> pdb=" O LEU J 803 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N LEU J 803 " --> pdb=" O GLU J 676 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N MET J 678 " --> pdb=" O ARG J 801 " (cutoff:3.500A) removed outlier: 7.001A pdb=" N LYS J 799 " --> pdb=" O ASP J 680 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N PHE J 802 " --> pdb=" O TRP J1617 " (cutoff:3.500A) removed outlier: 4.677A pdb=" N TRP J1617 " --> pdb=" O PHE J 802 " (cutoff:3.500A) removed outlier: 4.266A pdb=" N LEU J1618 " --> pdb=" O GLU J1613 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N GLN J1620 " --> pdb=" O ILE J1611 " (cutoff:3.500A) Processing sheet with id= 76, first strand: chain 'J' and resid 1135 through 1138 removed outlier: 6.828A pdb=" N ASP J1112 " --> pdb=" O GLY J1208 " (cutoff:3.500A) removed outlier: 4.316A pdb=" N ALA J1090 " --> pdb=" O PRO J1203 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N CYS J1205 " --> pdb=" O PHE J1088 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N ARG J1086 " --> pdb=" O LEU J1207 " (cutoff:3.500A) removed outlier: 5.713A pdb=" N ILE J1087 " --> pdb=" O SER J1252 " (cutoff:3.500A) removed outlier: 3.560A pdb=" N ARG J1089 " --> pdb=" O TRP J1250 " (cutoff:3.500A) removed outlier: 7.043A pdb=" N MET J1249 " --> pdb=" O PHE J1603 " (cutoff:3.500A) Processing sheet with id= 77, first strand: chain 'J' and resid 1142 through 1146 removed outlier: 8.298A pdb=" N ALA J1142 " --> pdb=" O HIS J1151 " (cutoff:3.500A) removed outlier: 4.502A pdb=" N HIS J1151 " --> pdb=" O ALA J1142 " (cutoff:3.500A) removed outlier: 6.181A pdb=" N ARG J1144 " --> pdb=" O ASN J1149 " (cutoff:3.500A) removed outlier: 4.078A pdb=" N ASN J1149 " --> pdb=" O ARG J1144 " (cutoff:3.500A) removed outlier: 5.957A pdb=" N HIS J1146 " --> pdb=" O GLN J1147 " (cutoff:3.500A) Processing sheet with id= 78, first strand: chain 'J' and resid 1171 through 1177 removed outlier: 4.427A pdb=" N THR J1172 " --> pdb=" O ASP J1167 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ASP J1167 " --> pdb=" O THR J1172 " (cutoff:3.500A) removed outlier: 4.513A pdb=" N GLY J1163 " --> pdb=" O THR J1176 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N ASP J1160 " --> pdb=" O ALA J1107 " (cutoff:3.500A) removed outlier: 6.023A pdb=" N PHE J1105 " --> pdb=" O VAL J1162 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N PHE J1103 " --> pdb=" O CYS J1164 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N TRP J1101 " --> pdb=" O VAL J1166 " (cutoff:3.500A) removed outlier: 5.639A pdb=" N GLY J1099 " --> pdb=" O MET J1168 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N GLU J1104 " --> pdb=" O ASN J1216 " (cutoff:3.500A) removed outlier: 6.723A pdb=" N VAL J1212 " --> pdb=" O VAL J1108 " (cutoff:3.500A) Processing sheet with id= 79, first strand: chain 'J' and resid 1256 through 1260 removed outlier: 3.878A pdb=" N VAL J1594 " --> pdb=" O LEU J1259 " (cutoff:3.500A) removed outlier: 6.576A pdb=" N LEU J1591 " --> pdb=" O SER J1305 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N SER J1305 " --> pdb=" O LEU J1591 " (cutoff:3.500A) removed outlier: 5.758A pdb=" N PHE J1301 " --> pdb=" O LEU J1595 " (cutoff:3.500A) removed outlier: 9.268A pdb=" N SER J1597 " --> pdb=" O ILE J1299 " (cutoff:3.500A) removed outlier: 13.862A pdb=" N ILE J1299 " --> pdb=" O SER J1597 " (cutoff:3.500A) Processing sheet with id= 80, first strand: chain 'J' and resid 1268 through 1274 removed outlier: 3.870A pdb=" N GLU J1269 " --> pdb=" O GLY J1291 " (cutoff:3.500A) removed outlier: 3.899A pdb=" N GLY J1291 " --> pdb=" O GLU J1269 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N THR J1271 " --> pdb=" O SER J1289 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N SER J1289 " --> pdb=" O THR J1271 " (cutoff:3.500A) removed outlier: 5.614A pdb=" N THR J1286 " --> pdb=" O GLU J1556 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N GLU J1556 " --> pdb=" O THR J1286 " (cutoff:3.500A) removed outlier: 5.554A pdb=" N LYS J1288 " --> pdb=" O GLN J1554 " (cutoff:3.500A) removed outlier: 6.708A pdb=" N PHE J1290 " --> pdb=" O VAL J1552 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N VAL J1552 " --> pdb=" O PHE J1290 " (cutoff:3.500A) removed outlier: 7.662A pdb=" N VAL J1552 " --> pdb=" O PHE J1433 " (cutoff:3.500A) removed outlier: 4.339A pdb=" N PHE J1433 " --> pdb=" O VAL J1552 " (cutoff:3.500A) removed outlier: 3.882A pdb=" N GLU J1556 " --> pdb=" O SER J1429 " (cutoff:3.500A) removed outlier: 6.791A pdb=" N SER J1429 " --> pdb=" O GLU J1556 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N TYR J1426 " --> pdb=" O VAL J1510 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N VAL J1510 " --> pdb=" O TYR J1426 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N TYR J1428 " --> pdb=" O GLY J1508 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N GLU J1506 " --> pdb=" O VAL J1430 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N ILE J1432 " --> pdb=" O GLY J1504 " (cutoff:3.500A) Processing sheet with id= 81, first strand: chain 'J' and resid 1486 through 1490 No H-bonds generated for sheet with id= 81 Processing sheet with id= 82, first strand: chain 'J' and resid 1762 through 1765 removed outlier: 4.855A pdb=" N SER J1779 " --> pdb=" O GLN J1762 " (cutoff:3.500A) Processing sheet with id= 83, first strand: chain 'J' and resid 4794 through 4797 No H-bonds generated for sheet with id= 83 Processing sheet with id= 84, first strand: chain 'J' and resid 1441 through 1445 Processing sheet with id= 85, first strand: chain 'B' and resid 3 through 7 removed outlier: 4.312A pdb=" N GLU B 3 " --> pdb=" O THR B 75 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLU B 5 " --> pdb=" O LYS B 73 " (cutoff:3.500A) removed outlier: 6.433A pdb=" N ARG B 71 " --> pdb=" O ILE B 7 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N ALA B 72 " --> pdb=" O VAL B 101 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N LEU B 74 " --> pdb=" O PHE B 99 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N CYS B 76 " --> pdb=" O LEU B 97 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N LEU B 97 " --> pdb=" O CYS B 76 " (cutoff:3.500A) Processing sheet with id= 86, first strand: chain 'B' and resid 45 through 49 removed outlier: 3.575A pdb=" N PHE B 48 " --> pdb=" O CYS B 22 " (cutoff:3.500A) removed outlier: 5.318A pdb=" N THR B 21 " --> pdb=" O LEU B 106 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N LEU B 106 " --> pdb=" O THR B 21 " (cutoff:3.500A) removed outlier: 6.582A pdb=" N VAL B 23 " --> pdb=" O LEU B 104 " (cutoff:3.500A) Processing sheet with id= 87, first strand: chain 'E' and resid 3 through 7 removed outlier: 4.312A pdb=" N GLU E 3 " --> pdb=" O THR E 75 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLU E 5 " --> pdb=" O LYS E 73 " (cutoff:3.500A) removed outlier: 6.434A pdb=" N ARG E 71 " --> pdb=" O ILE E 7 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N ALA E 72 " --> pdb=" O VAL E 101 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N LEU E 74 " --> pdb=" O PHE E 99 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N CYS E 76 " --> pdb=" O LEU E 97 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N LEU E 97 " --> pdb=" O CYS E 76 " (cutoff:3.500A) Processing sheet with id= 88, first strand: chain 'E' and resid 45 through 49 removed outlier: 3.574A pdb=" N PHE E 48 " --> pdb=" O CYS E 22 " (cutoff:3.500A) removed outlier: 5.318A pdb=" N THR E 21 " --> pdb=" O LEU E 106 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N LEU E 106 " --> pdb=" O THR E 21 " (cutoff:3.500A) removed outlier: 6.582A pdb=" N VAL E 23 " --> pdb=" O LEU E 104 " (cutoff:3.500A) Processing sheet with id= 89, first strand: chain 'H' and resid 3 through 7 removed outlier: 4.312A pdb=" N GLU H 3 " --> pdb=" O THR H 75 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLU H 5 " --> pdb=" O LYS H 73 " (cutoff:3.500A) removed outlier: 6.434A pdb=" N ARG H 71 " --> pdb=" O ILE H 7 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N ALA H 72 " --> pdb=" O VAL H 101 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N LEU H 74 " --> pdb=" O PHE H 99 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N CYS H 76 " --> pdb=" O LEU H 97 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N LEU H 97 " --> pdb=" O CYS H 76 " (cutoff:3.500A) Processing sheet with id= 90, first strand: chain 'H' and resid 45 through 49 removed outlier: 3.574A pdb=" N PHE H 48 " --> pdb=" O CYS H 22 " (cutoff:3.500A) removed outlier: 5.318A pdb=" N THR H 21 " --> pdb=" O LEU H 106 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N LEU H 106 " --> pdb=" O THR H 21 " (cutoff:3.500A) removed outlier: 6.582A pdb=" N VAL H 23 " --> pdb=" O LEU H 104 " (cutoff:3.500A) Processing sheet with id= 91, first strand: chain 'K' and resid 3 through 7 removed outlier: 4.312A pdb=" N GLU K 3 " --> pdb=" O THR K 75 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLU K 5 " --> pdb=" O LYS K 73 " (cutoff:3.500A) removed outlier: 6.434A pdb=" N ARG K 71 " --> pdb=" O ILE K 7 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N ALA K 72 " --> pdb=" O VAL K 101 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N LEU K 74 " --> pdb=" O PHE K 99 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N CYS K 76 " --> pdb=" O LEU K 97 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N LEU K 97 " --> pdb=" O CYS K 76 " (cutoff:3.500A) Processing sheet with id= 92, first strand: chain 'K' and resid 45 through 49 removed outlier: 3.575A pdb=" N PHE K 48 " --> pdb=" O CYS K 22 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N THR K 21 " --> pdb=" O LEU K 106 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N LEU K 106 " --> pdb=" O THR K 21 " (cutoff:3.500A) removed outlier: 6.582A pdb=" N VAL K 23 " --> pdb=" O LEU K 104 " (cutoff:3.500A) 4712 hydrogen bonds defined for protein. 14016 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 0 hydrogen bonds 0 hydrogen bond angles 0 basepair planarities 0 basepair parallelities 0 stacking parallelities Total time for adding SS restraints: 61.31 Time building geometry restraints manager: 34.07 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.18 - 1.31: 19532 1.31 - 1.44: 30699 1.44 - 1.56: 66045 1.56 - 1.69: 24 1.69 - 1.82: 1116 Bond restraints: 117416 Sorted by residual: bond pdb=" C4 ATP J6002 " pdb=" C5 ATP J6002 " ideal model delta sigma weight residual 1.388 1.458 -0.070 1.00e-02 1.00e+04 4.95e+01 bond pdb=" C4 ATP G6002 " pdb=" C5 ATP G6002 " ideal model delta sigma weight residual 1.388 1.458 -0.070 1.00e-02 1.00e+04 4.92e+01 bond pdb=" C4 ATP A6002 " pdb=" C5 ATP A6002 " ideal model delta sigma weight residual 1.388 1.458 -0.070 1.00e-02 1.00e+04 4.92e+01 bond pdb=" C4 ATP D6002 " pdb=" C5 ATP D6002 " ideal model delta sigma weight residual 1.388 1.458 -0.070 1.00e-02 1.00e+04 4.86e+01 bond pdb=" C5 ATP G6002 " pdb=" C6 ATP G6002 " ideal model delta sigma weight residual 1.409 1.465 -0.056 1.00e-02 1.00e+04 3.13e+01 ... (remaining 117411 not shown) Histogram of bond angle deviations from ideal: 96.79 - 105.47: 2045 105.47 - 114.15: 67873 114.15 - 122.82: 79347 122.82 - 131.50: 9275 131.50 - 140.18: 252 Bond angle restraints: 158792 Sorted by residual: angle pdb=" PB ATP D6002 " pdb=" O3B ATP D6002 " pdb=" PG ATP D6002 " ideal model delta sigma weight residual 139.87 119.66 20.21 1.00e+00 1.00e+00 4.08e+02 angle pdb=" PB ATP A6002 " pdb=" O3B ATP A6002 " pdb=" PG ATP A6002 " ideal model delta sigma weight residual 139.87 119.66 20.21 1.00e+00 1.00e+00 4.08e+02 angle pdb=" PB ATP G6002 " pdb=" O3B ATP G6002 " pdb=" PG ATP G6002 " ideal model delta sigma weight residual 139.87 119.66 20.21 1.00e+00 1.00e+00 4.08e+02 angle pdb=" PB ATP J6002 " pdb=" O3B ATP J6002 " pdb=" PG ATP J6002 " ideal model delta sigma weight residual 139.87 119.67 20.20 1.00e+00 1.00e+00 4.08e+02 angle pdb=" PA ATP J6002 " pdb=" O3A ATP J6002 " pdb=" PB ATP J6002 " ideal model delta sigma weight residual 136.83 120.59 16.24 1.00e+00 1.00e+00 2.64e+02 ... (remaining 158787 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 18.16: 61940 18.16 - 36.32: 6680 36.32 - 54.47: 1231 54.47 - 72.63: 182 72.63 - 90.79: 72 Dihedral angle restraints: 70105 sinusoidal: 26597 harmonic: 43508 Sorted by residual: dihedral pdb=" CA GLU D1847 " pdb=" C GLU D1847 " pdb=" N PRO D1848 " pdb=" CA PRO D1848 " ideal model delta harmonic sigma weight residual -180.00 -125.65 -54.35 0 5.00e+00 4.00e-02 1.18e+02 dihedral pdb=" CA GLU A1847 " pdb=" C GLU A1847 " pdb=" N PRO A1848 " pdb=" CA PRO A1848 " ideal model delta harmonic sigma weight residual 180.00 -125.65 -54.35 0 5.00e+00 4.00e-02 1.18e+02 dihedral pdb=" CA GLU G1847 " pdb=" C GLU G1847 " pdb=" N PRO G1848 " pdb=" CA PRO G1848 " ideal model delta harmonic sigma weight residual -180.00 -125.65 -54.35 0 5.00e+00 4.00e-02 1.18e+02 ... (remaining 70102 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.086: 16120 0.086 - 0.171: 1636 0.171 - 0.257: 116 0.257 - 0.343: 2 0.343 - 0.429: 2 Chirality restraints: 17876 Sorted by residual: chirality pdb=" CA TYR J4521 " pdb=" N TYR J4521 " pdb=" C TYR J4521 " pdb=" CB TYR J4521 " both_signs ideal model delta sigma weight residual False 2.51 2.08 0.43 2.00e-01 2.50e+01 4.60e+00 chirality pdb=" CA TYR G4521 " pdb=" N TYR G4521 " pdb=" C TYR G4521 " pdb=" CB TYR G4521 " both_signs ideal model delta sigma weight residual False 2.51 2.15 0.36 2.00e-01 2.50e+01 3.22e+00 chirality pdb=" CA TYR D4521 " pdb=" N TYR D4521 " pdb=" C TYR D4521 " pdb=" CB TYR D4521 " both_signs ideal model delta sigma weight residual False 2.51 2.20 0.31 2.00e-01 2.50e+01 2.36e+00 ... (remaining 17873 not shown) Planarity restraints: 20452 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" CB TYR J3893 " -0.052 2.00e-02 2.50e+03 2.73e-02 1.49e+01 pdb=" CG TYR J3893 " 0.047 2.00e-02 2.50e+03 pdb=" CD1 TYR J3893 " 0.012 2.00e-02 2.50e+03 pdb=" CD2 TYR J3893 " 0.015 2.00e-02 2.50e+03 pdb=" CE1 TYR J3893 " 0.004 2.00e-02 2.50e+03 pdb=" CE2 TYR J3893 " 0.001 2.00e-02 2.50e+03 pdb=" CZ TYR J3893 " -0.001 2.00e-02 2.50e+03 pdb=" OH TYR J3893 " -0.026 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" CB TYR D3893 " 0.052 2.00e-02 2.50e+03 2.73e-02 1.49e+01 pdb=" CG TYR D3893 " -0.047 2.00e-02 2.50e+03 pdb=" CD1 TYR D3893 " -0.012 2.00e-02 2.50e+03 pdb=" CD2 TYR D3893 " -0.015 2.00e-02 2.50e+03 pdb=" CE1 TYR D3893 " -0.004 2.00e-02 2.50e+03 pdb=" CE2 TYR D3893 " -0.001 2.00e-02 2.50e+03 pdb=" CZ TYR D3893 " 0.001 2.00e-02 2.50e+03 pdb=" OH TYR D3893 " 0.025 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" C LEU J2526 " 0.063 5.00e-02 4.00e+02 9.63e-02 1.48e+01 pdb=" N PRO J2527 " -0.167 5.00e-02 4.00e+02 pdb=" CA PRO J2527 " 0.049 5.00e-02 4.00e+02 pdb=" CD PRO J2527 " 0.054 5.00e-02 4.00e+02 ... (remaining 20449 not shown) Histogram of nonbonded interaction distances: 2.20 - 2.74: 15414 2.74 - 3.28: 108561 3.28 - 3.82: 187463 3.82 - 4.36: 215871 4.36 - 4.90: 356662 Nonbonded interactions: 883971 Sorted by model distance: nonbonded pdb=" O GLY D4826 " pdb=" NH1 ARG G4823 " model vdw 2.203 2.520 nonbonded pdb=" O GLY G4826 " pdb=" NH1 ARG J4823 " model vdw 2.209 2.520 nonbonded pdb=" O GLY A4826 " pdb=" NH1 ARG D4823 " model vdw 2.217 2.520 nonbonded pdb=" O PHE J4193 " pdb=" OG1 THR J4197 " model vdw 2.224 2.440 nonbonded pdb=" O PHE A4193 " pdb=" OG1 THR A4197 " model vdw 2.224 2.440 ... (remaining 883966 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model Found NCS groups: ncs_group { reference = chain 'A' selection = chain 'D' selection = chain 'G' selection = chain 'J' } ncs_group { reference = chain 'B' selection = chain 'E' selection = chain 'H' selection = chain 'K' } ncs_group { reference = chain 'C' selection = chain 'F' selection = chain 'I' selection = chain 'L' } Set up NCS constraints No NCS constraints will be used in refinement. Set refine NCS operators Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=0.99 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as group one per residue Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 2.600 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.000 Assert all atoms have isotropic ADPs: 0.000 Construct map_model_manager: 0.060 Extract box with map and model: 17.360 Check model and map are aligned: 1.230 Set scattering table: 0.720 Process input model: 270.060 Find NCS groups from input model: 6.160 Set up NCS constraints: 0.880 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.000 Extract rigid body selections: 0.000 Check and reset occupancies: 0.020 Load rotamer database and sin/cos tables:2.510 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 301.600 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7812 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.008 0.110 117416 Z= 0.489 Angle : 1.059 20.208 158792 Z= 0.598 Chirality : 0.054 0.429 17876 Planarity : 0.007 0.096 20452 Dihedral : 15.542 90.789 41889 Min Nonbonded Distance : 2.203 Molprobity Statistics. All-atom Clashscore : 7.76 Ramachandran Plot: Outliers : 0.25 % Allowed : 12.23 % Favored : 87.52 % Rotamer: Outliers : 0.47 % Allowed : 11.50 % Favored : 88.04 % Cbeta Deviations : 0.01 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.03 % Twisted Proline : 3.10 % Twisted General : 0.42 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -5.76 (0.05), residues: 14568 helix: -4.07 (0.03), residues: 6844 sheet: -3.31 (0.13), residues: 1208 loop : -3.52 (0.06), residues: 6516 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.036 0.002 TRP D4950 HIS 0.012 0.002 HIS G 604 PHE 0.033 0.003 PHE G 727 TYR 0.052 0.003 TYR J3893 ARG 0.008 0.001 ARG D4948 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 29136 Ramachandran restraints generated. 14568 Oldfield, 0 Emsley, 14568 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 29136 Ramachandran restraints generated. 14568 Oldfield, 0 Emsley, 14568 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 1739 residues out of total 13196 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 62 poor density : 1677 time to evaluate : 9.575 Fit side-chains revert: symmetry clash Traceback (most recent call last): File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/build/../modules/phenix/phenix/command_line/real_space_refine.py", line 8, in run_program(real_space_refine.Program) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/iotbx/cli_parser.py", line 944, in run_program task.run() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/programs/real_space_refine.py", line 189, in run log = self.logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/rsr/wrappers.py", line 58, in __init__ log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 303, in __init__ self.caller(self.optimize_sidechains) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 321, in caller func() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 609, in optimize_sidechains log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 83, in __init__ rotatable_hd = self.rotatable_hd) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 189, in run_one pdb_hierarchy = self.run_one_one(args=args) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 133, in run_one_one log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 108, in __init__ self.loop(function = self.one_residue_iteration) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 284, in loop function(residue = residue) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 271, in one_residue_iteration log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 172, in __init__ self.fit_proline() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 217, in fit_proline for rotamer, sites_cart in rotamer_iterator: TypeError: 'NoneType' object is not iterable