phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jpu_9871/05_2023/6jpu_9871_neut.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jpu_9871/05_2023/6jpu_9871.map refinement.macro_cycles=10 scattering_table=electron resolution=4.27 write_initial_geo_file=False >& 6jpu.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jpu_9871/05_2023/6jpu_9871.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jpu_9871/05_2023/6jpu_9871.map 4.27
Refinement ran but no refined model file.