Starting phenix.real_space_refine on Fri Dec 8 04:58:26 2023 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrr_9879/12_2023/6jrr_9879_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrr_9879/12_2023/6jrr_9879.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=3.9 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrr_9879/12_2023/6jrr_9879.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrr_9879/12_2023/6jrr_9879.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrr_9879/12_2023/6jrr_9879_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrr_9879/12_2023/6jrr_9879_updated.pdb" } resolution = 3.9 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= 0.001 sd= 0.006 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 7 Type Number sf(0) Gaussians Ca 4 9.91 5 Zn 4 6.06 5 P 12 5.49 5 S 640 5.16 5 C 69468 2.51 5 N 18724 2.21 5 O 20280 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "A PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 61": "OD1" <-> "OD2" Residue "A PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 76": "NH1" <-> "NH2" Residue "A ARG 111": "NH1" <-> "NH2" Residue "A TYR 115": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 122": "NH1" <-> "NH2" Residue "A ASP 152": "OD1" <-> "OD2" Residue "A ARG 190": "NH1" <-> "NH2" Residue "A TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 232": "OD1" <-> "OD2" Residue "A ARG 257": "NH1" <-> "NH2" Residue "A GLU 263": "OE1" <-> "OE2" Residue "A PHE 295": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 345": "OE1" <-> "OE2" Residue "A PHE 362": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 414": "NH1" <-> "NH2" Residue "A ARG 431": "NH1" <-> "NH2" Residue "A GLU 450": "OE1" <-> "OE2" Residue "A ARG 478": "NH1" <-> "NH2" Residue "A GLU 535": "OE1" <-> "OE2" Residue "A ASP 556": "OD1" <-> "OD2" Residue "A GLU 563": "OE1" <-> "OE2" Residue "A GLU 573": "OE1" <-> "OE2" Residue "A ASP 612": "OD1" <-> "OD2" Residue "A ARG 626": "NH1" <-> "NH2" Residue "A ASP 634": "OD1" <-> "OD2" Residue "A PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 674": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 676": "OE1" <-> "OE2" Residue "A PHE 685": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 712": "OE1" <-> "OE2" Residue "A PHE 779": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 811": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 839": "OE1" <-> "OE2" Residue "A PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 868": "OD1" <-> "OD2" Residue "A ASP 982": "OD1" <-> "OD2" Residue "A PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 1180": "OE1" <-> "OE2" Residue "A PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 1199": "OD1" <-> "OD2" Residue "A PHE 1290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 1449": "OD1" <-> "OD2" Residue "A ASP 1454": "OD1" <-> "OD2" Residue "A ASP 1471": "OD1" <-> "OD2" Residue "A GLU 1623": "OE1" <-> "OE2" Residue "A ASP 1640": "OD1" <-> "OD2" Residue "A GLU 1648": "OE1" <-> "OE2" Residue "A PHE 1725": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 1807": "NH1" <-> "NH2" Residue "A GLU 1815": "OE1" <-> "OE2" Residue "A GLU 1901": "OE1" <-> "OE2" Residue "A ASP 1916": "OD1" <-> "OD2" Residue "A GLU 2035": "OE1" <-> "OE2" Residue "A GLU 2077": "OE1" <-> "OE2" Residue "A ASP 2078": "OD1" <-> "OD2" Residue "A GLU 2115": "OE1" <-> "OE2" Residue "A GLU 2138": "OE1" <-> "OE2" Residue "A ASP 2149": "OD1" <-> "OD2" Residue "A GLU 2174": "OE1" <-> "OE2" Residue "A TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 2260": "OE1" <-> "OE2" Residue "A GLU 2264": "OE1" <-> "OE2" Residue "A PHE 2305": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 2315": "OE1" <-> "OE2" Residue "A ARG 2323": "NH1" <-> "NH2" Residue "A ARG 2327": "NH1" <-> "NH2" Residue "A PHE 2461": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 2483": "OD1" <-> "OD2" Residue "A ARG 2519": "NH1" <-> "NH2" Residue "A TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 2719": "OE1" <-> "OE2" Residue "A GLU 2770": "OE1" <-> "OE2" Residue "A ASP 2797": "OD1" <-> "OD2" Residue "A ASP 2828": "OD1" <-> "OD2" Residue "A ASP 2837": "OD1" <-> "OD2" Residue "A GLU 2847": "OE1" <-> "OE2" Residue "A GLU 2882": "OE1" <-> "OE2" Residue "A ASP 2892": "OD1" <-> "OD2" Residue "A ASP 3686": "OD1" <-> "OD2" Residue "A TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 3694": "OD1" <-> "OD2" Residue "A ASP 3877": "OD1" <-> "OD2" Residue "A PHE 3907": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 3971": "OE1" <-> "OE2" Residue "A ASP 4026": "OD1" <-> "OD2" Residue "A ASP 4031": "OD1" <-> "OD2" Residue "A GLU 4054": "OE1" <-> "OE2" Residue "A GLU 4063": "OE1" <-> "OE2" Residue "A GLU 4083": "OE1" <-> "OE2" Residue "A PHE 4097": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 4113": "OD1" <-> "OD2" Residue "A ARG 4148": "NH1" <-> "NH2" Residue "A TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4158": "NH1" <-> "NH2" Residue "A GLU 4195": "OE1" <-> "OE2" Residue "A ARG 4498": "NH1" <-> "NH2" Residue "A TYR 4501": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4504": "NH1" <-> "NH2" Residue "A TYR 4521": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4661": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 4665": "OD1" <-> "OD2" Residue "A GLU 4669": "OE1" <-> "OE2" Residue "A PHE 4751": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4791": "NH1" <-> "NH2" Residue "A PHE 4793": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 4794": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4823": "NH1" <-> "NH2" Residue "A ASP 4834": "OD1" <-> "OD2" Residue "A ASP 4848": "OD1" <-> "OD2" Residue "A PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4852": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4873": "OE1" <-> "OE2" Residue "A ARG 4875": "NH1" <-> "NH2" Residue "A GLU 4883": "OE1" <-> "OE2" Residue "A TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 13": "NH1" <-> "NH2" Residue "B ASP 79": "OD1" <-> "OD2" Residue "B TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 61": "OD1" <-> "OD2" Residue "C PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 76": "NH1" <-> "NH2" Residue "C ARG 111": "NH1" <-> "NH2" Residue "C TYR 115": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 122": "NH1" <-> "NH2" Residue "C ASP 152": "OD1" <-> "OD2" Residue "C ARG 190": "NH1" <-> "NH2" Residue "C TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 232": "OD1" <-> "OD2" Residue "C ARG 257": "NH1" <-> "NH2" Residue "C GLU 263": "OE1" <-> "OE2" Residue "C PHE 295": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 345": "OE1" <-> "OE2" Residue "C PHE 362": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 414": "NH1" <-> "NH2" Residue "C ARG 431": "NH1" <-> "NH2" Residue "C GLU 450": "OE1" <-> "OE2" Residue "C ARG 478": "NH1" <-> "NH2" Residue "C GLU 535": "OE1" <-> "OE2" Residue "C ASP 556": "OD1" <-> "OD2" Residue "C GLU 563": "OE1" <-> "OE2" Residue "C GLU 573": "OE1" <-> "OE2" Residue "C ASP 612": "OD1" <-> "OD2" Residue "C ARG 626": "NH1" <-> "NH2" Residue "C ASP 634": "OD1" <-> "OD2" Residue "C PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 674": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 676": "OE1" <-> "OE2" Residue "C PHE 685": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 712": "OE1" <-> "OE2" Residue "C PHE 779": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 811": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 839": "OE1" <-> "OE2" Residue "C PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 868": "OD1" <-> "OD2" Residue "C ASP 982": "OD1" <-> "OD2" Residue "C PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 1180": "OE1" <-> "OE2" Residue "C PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 1199": "OD1" <-> "OD2" Residue "C PHE 1290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 1449": "OD1" <-> "OD2" Residue "C ASP 1454": "OD1" <-> "OD2" Residue "C ASP 1471": "OD1" <-> "OD2" Residue "C GLU 1623": "OE1" <-> "OE2" Residue "C ASP 1640": "OD1" <-> "OD2" Residue "C GLU 1648": "OE1" <-> "OE2" Residue "C PHE 1725": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 1807": "NH1" <-> "NH2" Residue "C GLU 1815": "OE1" <-> "OE2" Residue "C GLU 1901": "OE1" <-> "OE2" Residue "C ASP 1916": "OD1" <-> "OD2" Residue "C GLU 2035": "OE1" <-> "OE2" Residue "C GLU 2077": "OE1" <-> "OE2" Residue "C ASP 2078": "OD1" <-> "OD2" Residue "C GLU 2115": "OE1" <-> "OE2" Residue "C GLU 2138": "OE1" <-> "OE2" Residue "C ASP 2149": "OD1" <-> "OD2" Residue "C GLU 2174": "OE1" <-> "OE2" Residue "C TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 2260": "OE1" <-> "OE2" Residue "C GLU 2264": "OE1" <-> "OE2" Residue "C PHE 2305": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 2315": "OE1" <-> "OE2" Residue "C ARG 2323": "NH1" <-> "NH2" Residue "C ARG 2327": "NH1" <-> "NH2" Residue "C PHE 2461": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 2483": "OD1" <-> "OD2" Residue "C ARG 2519": "NH1" <-> "NH2" Residue "C TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 2719": "OE1" <-> "OE2" Residue "C GLU 2770": "OE1" <-> "OE2" Residue "C ASP 2797": "OD1" <-> "OD2" Residue "C ASP 2828": "OD1" <-> "OD2" Residue "C ASP 2837": "OD1" <-> "OD2" Residue "C GLU 2847": "OE1" <-> "OE2" Residue "C GLU 2882": "OE1" <-> "OE2" Residue "C ASP 2892": "OD1" <-> "OD2" Residue "C ASP 3686": "OD1" <-> "OD2" Residue "C TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 3694": "OD1" <-> "OD2" Residue "C ASP 3877": "OD1" <-> "OD2" Residue "C PHE 3907": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 3971": "OE1" <-> "OE2" Residue "C ASP 4026": "OD1" <-> "OD2" Residue "C ASP 4031": "OD1" <-> "OD2" Residue "C GLU 4054": "OE1" <-> "OE2" Residue "C GLU 4063": "OE1" <-> "OE2" Residue "C GLU 4083": "OE1" <-> "OE2" Residue "C PHE 4097": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 4113": "OD1" <-> "OD2" Residue "C ARG 4148": "NH1" <-> "NH2" Residue "C TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 4158": "NH1" <-> "NH2" Residue "C GLU 4195": "OE1" <-> "OE2" Residue "C ARG 4498": "NH1" <-> "NH2" Residue "C TYR 4501": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 4504": "NH1" <-> "NH2" Residue "C TYR 4521": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 4661": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 4665": "OD1" <-> "OD2" Residue "C GLU 4669": "OE1" <-> "OE2" Residue "C PHE 4751": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 4791": "NH1" <-> "NH2" Residue "C PHE 4793": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 4794": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 4823": "NH1" <-> "NH2" Residue "C ASP 4834": "OD1" <-> "OD2" Residue "C ASP 4848": "OD1" <-> "OD2" Residue "C PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 4852": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 4873": "OE1" <-> "OE2" Residue "C ARG 4875": "NH1" <-> "NH2" Residue "C GLU 4883": "OE1" <-> "OE2" Residue "C TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 13": "NH1" <-> "NH2" Residue "D ASP 79": "OD1" <-> "OD2" Residue "D TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 61": "OD1" <-> "OD2" Residue "E PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 76": "NH1" <-> "NH2" Residue "E ARG 111": "NH1" <-> "NH2" Residue "E TYR 115": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 122": "NH1" <-> "NH2" Residue "E ASP 152": "OD1" <-> "OD2" Residue "E ARG 190": "NH1" <-> "NH2" Residue "E TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 232": "OD1" <-> "OD2" Residue "E ARG 257": "NH1" <-> "NH2" Residue "E GLU 263": "OE1" <-> "OE2" Residue "E PHE 295": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 345": "OE1" <-> "OE2" Residue "E PHE 362": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 414": "NH1" <-> "NH2" Residue "E ARG 431": "NH1" <-> "NH2" Residue "E GLU 450": "OE1" <-> "OE2" Residue "E ARG 478": "NH1" <-> "NH2" Residue "E GLU 535": "OE1" <-> "OE2" Residue "E ASP 556": "OD1" <-> "OD2" Residue "E GLU 563": "OE1" <-> "OE2" Residue "E GLU 573": "OE1" <-> "OE2" Residue "E ASP 612": "OD1" <-> "OD2" Residue "E ARG 626": "NH1" <-> "NH2" Residue "E ASP 634": "OD1" <-> "OD2" Residue "E PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 674": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 676": "OE1" <-> "OE2" Residue "E PHE 685": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 712": "OE1" <-> "OE2" Residue "E PHE 779": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 811": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 839": "OE1" <-> "OE2" Residue "E PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 868": "OD1" <-> "OD2" Residue "E ASP 982": "OD1" <-> "OD2" Residue "E PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 1180": "OE1" <-> "OE2" Residue "E PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 1199": "OD1" <-> "OD2" Residue "E PHE 1290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 1449": "OD1" <-> "OD2" Residue "E ASP 1454": "OD1" <-> "OD2" Residue "E ASP 1471": "OD1" <-> "OD2" Residue "E GLU 1623": "OE1" <-> "OE2" Residue "E ASP 1640": "OD1" <-> "OD2" Residue "E GLU 1648": "OE1" <-> "OE2" Residue "E PHE 1725": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 1807": "NH1" <-> "NH2" Residue "E GLU 1815": "OE1" <-> "OE2" Residue "E GLU 1901": "OE1" <-> "OE2" Residue "E ASP 1916": "OD1" <-> "OD2" Residue "E GLU 2035": "OE1" <-> "OE2" Residue "E GLU 2077": "OE1" <-> "OE2" Residue "E ASP 2078": "OD1" <-> "OD2" Residue "E GLU 2115": "OE1" <-> "OE2" Residue "E GLU 2138": "OE1" <-> "OE2" Residue "E ASP 2149": "OD1" <-> "OD2" Residue "E GLU 2174": "OE1" <-> "OE2" Residue "E TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 2260": "OE1" <-> "OE2" Residue "E GLU 2264": "OE1" <-> "OE2" Residue "E PHE 2305": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 2315": "OE1" <-> "OE2" Residue "E ARG 2323": "NH1" <-> "NH2" Residue "E ARG 2327": "NH1" <-> "NH2" Residue "E PHE 2461": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 2483": "OD1" <-> "OD2" Residue "E ARG 2519": "NH1" <-> "NH2" Residue "E TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 2719": "OE1" <-> "OE2" Residue "E GLU 2770": "OE1" <-> "OE2" Residue "E ASP 2797": "OD1" <-> "OD2" Residue "E ASP 2828": "OD1" <-> "OD2" Residue "E ASP 2837": "OD1" <-> "OD2" Residue "E GLU 2847": "OE1" <-> "OE2" Residue "E GLU 2882": "OE1" <-> "OE2" Residue "E ASP 2892": "OD1" <-> "OD2" Residue "E ASP 3686": "OD1" <-> "OD2" Residue "E TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 3694": "OD1" <-> "OD2" Residue "E ASP 3877": "OD1" <-> "OD2" Residue "E PHE 3907": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 3971": "OE1" <-> "OE2" Residue "E ASP 4026": "OD1" <-> "OD2" Residue "E ASP 4031": "OD1" <-> "OD2" Residue "E GLU 4054": "OE1" <-> "OE2" Residue "E GLU 4063": "OE1" <-> "OE2" Residue "E GLU 4083": "OE1" <-> "OE2" Residue "E PHE 4097": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 4113": "OD1" <-> "OD2" Residue "E ARG 4148": "NH1" <-> "NH2" Residue "E TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4158": "NH1" <-> "NH2" Residue "E GLU 4195": "OE1" <-> "OE2" Residue "E ARG 4498": "NH1" <-> "NH2" Residue "E TYR 4501": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4504": "NH1" <-> "NH2" Residue "E TYR 4521": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 4661": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 4665": "OD1" <-> "OD2" Residue "E GLU 4669": "OE1" <-> "OE2" Residue "E PHE 4751": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4791": "NH1" <-> "NH2" Residue "E PHE 4793": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 4794": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4823": "NH1" <-> "NH2" Residue "E ASP 4834": "OD1" <-> "OD2" Residue "E ASP 4848": "OD1" <-> "OD2" Residue "E PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 4852": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 4873": "OE1" <-> "OE2" Residue "E ARG 4875": "NH1" <-> "NH2" Residue "E GLU 4883": "OE1" <-> "OE2" Residue "E TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F ARG 13": "NH1" <-> "NH2" Residue "F ASP 79": "OD1" <-> "OD2" Residue "F TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 61": "OD1" <-> "OD2" Residue "G PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 76": "NH1" <-> "NH2" Residue "G ARG 111": "NH1" <-> "NH2" Residue "G TYR 115": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 122": "NH1" <-> "NH2" Residue "G ASP 152": "OD1" <-> "OD2" Residue "G ARG 190": "NH1" <-> "NH2" Residue "G TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 232": "OD1" <-> "OD2" Residue "G ARG 257": "NH1" <-> "NH2" Residue "G GLU 263": "OE1" <-> "OE2" Residue "G PHE 295": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 345": "OE1" <-> "OE2" Residue "G PHE 362": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 414": "NH1" <-> "NH2" Residue "G ARG 431": "NH1" <-> "NH2" Residue "G GLU 450": "OE1" <-> "OE2" Residue "G ARG 478": "NH1" <-> "NH2" Residue "G GLU 535": "OE1" <-> "OE2" Residue "G ASP 556": "OD1" <-> "OD2" Residue "G GLU 563": "OE1" <-> "OE2" Residue "G GLU 573": "OE1" <-> "OE2" Residue "G ASP 612": "OD1" <-> "OD2" Residue "G ARG 626": "NH1" <-> "NH2" Residue "G ASP 634": "OD1" <-> "OD2" Residue "G PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 674": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 676": "OE1" <-> "OE2" Residue "G PHE 685": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 712": "OE1" <-> "OE2" Residue "G PHE 779": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 811": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 839": "OE1" <-> "OE2" Residue "G PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 868": "OD1" <-> "OD2" Residue "G ASP 982": "OD1" <-> "OD2" Residue "G PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 1180": "OE1" <-> "OE2" Residue "G PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 1199": "OD1" <-> "OD2" Residue "G PHE 1290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 1449": "OD1" <-> "OD2" Residue "G ASP 1454": "OD1" <-> "OD2" Residue "G ASP 1471": "OD1" <-> "OD2" Residue "G GLU 1623": "OE1" <-> "OE2" Residue "G ASP 1640": "OD1" <-> "OD2" Residue "G GLU 1648": "OE1" <-> "OE2" Residue "G PHE 1725": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 1807": "NH1" <-> "NH2" Residue "G GLU 1815": "OE1" <-> "OE2" Residue "G GLU 1901": "OE1" <-> "OE2" Residue "G ASP 1916": "OD1" <-> "OD2" Residue "G GLU 2035": "OE1" <-> "OE2" Residue "G GLU 2077": "OE1" <-> "OE2" Residue "G ASP 2078": "OD1" <-> "OD2" Residue "G GLU 2115": "OE1" <-> "OE2" Residue "G GLU 2138": "OE1" <-> "OE2" Residue "G ASP 2149": "OD1" <-> "OD2" Residue "G GLU 2174": "OE1" <-> "OE2" Residue "G TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 2260": "OE1" <-> "OE2" Residue "G GLU 2264": "OE1" <-> "OE2" Residue "G PHE 2305": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 2315": "OE1" <-> "OE2" Residue "G ARG 2323": "NH1" <-> "NH2" Residue "G ARG 2327": "NH1" <-> "NH2" Residue "G PHE 2461": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 2483": "OD1" <-> "OD2" Residue "G ARG 2519": "NH1" <-> "NH2" Residue "G TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 2719": "OE1" <-> "OE2" Residue "G GLU 2770": "OE1" <-> "OE2" Residue "G ASP 2797": "OD1" <-> "OD2" Residue "G ASP 2828": "OD1" <-> "OD2" Residue "G ASP 2837": "OD1" <-> "OD2" Residue "G GLU 2847": "OE1" <-> "OE2" Residue "G GLU 2882": "OE1" <-> "OE2" Residue "G ASP 2892": "OD1" <-> "OD2" Residue "G ASP 3686": "OD1" <-> "OD2" Residue "G TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 3694": "OD1" <-> "OD2" Residue "G ASP 3877": "OD1" <-> "OD2" Residue "G PHE 3907": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 3971": "OE1" <-> "OE2" Residue "G ASP 4026": "OD1" <-> "OD2" Residue "G ASP 4031": "OD1" <-> "OD2" Residue "G GLU 4054": "OE1" <-> "OE2" Residue "G GLU 4063": "OE1" <-> "OE2" Residue "G GLU 4083": "OE1" <-> "OE2" Residue "G PHE 4097": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 4113": "OD1" <-> "OD2" Residue "G ARG 4148": "NH1" <-> "NH2" Residue "G TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4158": "NH1" <-> "NH2" Residue "G GLU 4195": "OE1" <-> "OE2" Residue "G ARG 4498": "NH1" <-> "NH2" Residue "G TYR 4501": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4504": "NH1" <-> "NH2" Residue "G TYR 4521": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4661": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 4665": "OD1" <-> "OD2" Residue "G GLU 4669": "OE1" <-> "OE2" Residue "G PHE 4751": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4791": "NH1" <-> "NH2" Residue "G PHE 4793": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 4794": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 4834": "OD1" <-> "OD2" Residue "G ASP 4848": "OD1" <-> "OD2" Residue "G PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4852": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 4873": "OE1" <-> "OE2" Residue "G ARG 4875": "NH1" <-> "NH2" Residue "G GLU 4883": "OE1" <-> "OE2" Residue "G TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 13": "NH1" <-> "NH2" Residue "H ASP 79": "OD1" <-> "OD2" Residue "H TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Time to flip residues: 0.27s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/chem_data/mon_lib" Total number of atoms: 109132 Number of models: 1 Model: "" Number of chains: 12 Chain: "A" Number of atoms: 26417 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3460, 26417 Classifications: {'peptide': 3460} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 353} Link IDs: {'PTRANS': 118, 'TRANS': 3341} Chain breaks: 61 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1443 Unresolved non-hydrogen angles: 1840 Unresolved non-hydrogen dihedrals: 1194 Unresolved non-hydrogen chiralities: 129 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 15, 'ASN:plan1': 18, 'TRP:plan': 2, 'ASP:plan': 25, 'PHE:plan': 18, 'GLU:plan': 36, 'ARG:plan': 27} Unresolved non-hydrogen planarities: 790 Chain: "B" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "C" Number of atoms: 26417 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3460, 26417 Classifications: {'peptide': 3460} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 353} Link IDs: {'PTRANS': 118, 'TRANS': 3341} Chain breaks: 61 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1443 Unresolved non-hydrogen angles: 1840 Unresolved non-hydrogen dihedrals: 1194 Unresolved non-hydrogen chiralities: 129 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 15, 'ASN:plan1': 18, 'TRP:plan': 2, 'ASP:plan': 25, 'PHE:plan': 18, 'GLU:plan': 36, 'ARG:plan': 27} Unresolved non-hydrogen planarities: 790 Chain: "D" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "E" Number of atoms: 26417 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3460, 26417 Classifications: {'peptide': 3460} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 353} Link IDs: {'PTRANS': 118, 'TRANS': 3341} Chain breaks: 61 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1443 Unresolved non-hydrogen angles: 1840 Unresolved non-hydrogen dihedrals: 1196 Unresolved non-hydrogen chiralities: 129 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 15, 'ASN:plan1': 18, 'TRP:plan': 2, 'ASP:plan': 25, 'PHE:plan': 18, 'GLU:plan': 36, 'ARG:plan': 27} Unresolved non-hydrogen planarities: 790 Chain: "F" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "G" Number of atoms: 26417 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3460, 26417 Classifications: {'peptide': 3460} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 353} Link IDs: {'PTRANS': 118, 'TRANS': 3341} Chain breaks: 61 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1443 Unresolved non-hydrogen angles: 1840 Unresolved non-hydrogen dihedrals: 1194 Unresolved non-hydrogen chiralities: 129 Planarities with less than four sites: {'GLN:plan1': 18, 'HIS:plan': 20, 'TYR:plan': 15, 'ASN:plan1': 18, 'TRP:plan': 2, 'ASP:plan': 25, 'PHE:plan': 18, 'GLU:plan': 36, 'ARG:plan': 27} Unresolved non-hydrogen planarities: 790 Chain: "H" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "A" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "C" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "E" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "G" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} List of CYS excluded from plausible disulfide bonds: (reason: may participate in coordination) ATOM 25780 SG CYS A4889 205.382 206.255 84.771 1.00 50.56 S ATOM 25805 SG CYS A4892 206.397 204.581 88.835 1.00 50.05 S ATOM 53016 SG CYS C4889 206.267 176.474 84.771 1.00 50.56 S ATOM 53041 SG CYS C4892 204.593 175.459 88.835 1.00 50.05 S ATOM 80252 SG CYS E4889 176.461 175.590 84.777 1.00 50.56 S ATOM 80277 SG CYS E4892 175.447 177.264 88.841 1.00 50.05 S ATOM A05S0 SG CYS G4889 175.595 205.386 84.769 1.00 50.56 S ATOM A05SP SG CYS G4892 177.269 206.400 88.833 1.00 50.05 S Residues with excluded nonbonded symmetry interactions: 4 residue: pdb=" N HIS B 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS B 87 " occ=0.99 residue: pdb=" N HIS D 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS D 87 " occ=0.99 residue: pdb=" N HIS F 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS F 87 " occ=0.99 residue: pdb=" N HIS H 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS H 87 " occ=0.99 Time building chain proxies: 39.70, per 1000 atoms: 0.36 Number of scatterers: 109132 At special positions: 0 Unit cell: (382.941, 382.941, 204.017, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 7 Type Number sf(0) Zn 4 29.99 Ca 4 19.99 S 640 16.00 P 12 15.00 O 20280 8.00 N 18724 7.00 C 69468 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=0, symmetry=0 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=0, symmetry=0 Time building additional restraints: 29.96 Conformation dependent library (CDL) restraints added in 15.7 seconds Dynamic metal coordination Zn2+ tetrahedral coordination pdb=" ZN A6000 " pdb="ZN ZN A6000 " - pdb=" NE2 HIS A4909 " pdb="ZN ZN A6000 " - pdb=" SG CYS A4892 " pdb="ZN ZN A6000 " - pdb=" SG CYS A4889 " pdb="ZN ZN A6000 " - pdb=" NE2 HIS A4914 " pdb=" ZN C6000 " pdb="ZN ZN C6000 " - pdb=" NE2 HIS C4909 " pdb="ZN ZN C6000 " - pdb=" SG CYS C4892 " pdb="ZN ZN C6000 " - pdb=" SG CYS C4889 " pdb="ZN ZN C6000 " - pdb=" NE2 HIS C4914 " pdb=" ZN E6000 " pdb="ZN ZN E6000 " - pdb=" NE2 HIS E4909 " pdb="ZN ZN E6000 " - pdb=" SG CYS E4892 " pdb="ZN ZN E6000 " - pdb=" SG CYS E4889 " pdb="ZN ZN E6000 " - pdb=" NE2 HIS E4914 " pdb=" ZN G6000 " pdb="ZN ZN G6000 " - pdb=" NE2 HIS G4909 " pdb="ZN ZN G6000 " - pdb=" SG CYS G4892 " pdb="ZN ZN G6000 " - pdb=" SG CYS G4889 " pdb="ZN ZN G6000 " - pdb=" NE2 HIS G4914 " Number of angles added : 8 27528 Ramachandran restraints generated. 13764 Oldfield, 0 Emsley, 13764 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 26760 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 540 helices and 64 sheets defined 58.3% alpha, 8.9% beta 0 base pairs and 0 stacking pairs defined. Time for finding SS restraints: 36.31 Creating SS restraints... Processing helix chain 'A' and resid 61 through 66 removed outlier: 4.734A pdb=" N CYS A 65 " --> pdb=" O ASP A 61 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N THR A 66 " --> pdb=" O LEU A 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 61 through 66' Processing helix chain 'A' and resid 74 through 84 removed outlier: 3.526A pdb=" N ALA A 83 " --> pdb=" O GLN A 79 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ASN A 84 " --> pdb=" O GLU A 80 " (cutoff:3.500A) Processing helix chain 'A' and resid 265 through 271 removed outlier: 4.727A pdb=" N VAL A 269 " --> pdb=" O GLY A 265 " (cutoff:3.500A) removed outlier: 5.680A pdb=" N ALA A 271 " --> pdb=" O VAL A 267 " (cutoff:3.500A) Processing helix chain 'A' and resid 323 through 328 removed outlier: 3.878A pdb=" N ALA A 328 " --> pdb=" O VAL A 324 " (cutoff:3.500A) Processing helix chain 'A' and resid 409 through 438 removed outlier: 3.618A pdb=" N ARG A 420 " --> pdb=" O ALA A 416 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N LEU A 425 " --> pdb=" O SER A 421 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N ARG A 428 " --> pdb=" O PHE A 424 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N LEU A 436 " --> pdb=" O GLY A 432 " (cutoff:3.500A) removed outlier: 4.135A pdb=" N LYS A 438 " --> pdb=" O ASP A 434 " (cutoff:3.500A) Processing helix chain 'A' and resid 448 through 464 removed outlier: 4.796A pdb=" N VAL A 452 " --> pdb=" O PRO A 448 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N LEU A 454 " --> pdb=" O GLU A 450 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N SER A 455 " --> pdb=" O SER A 451 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N GLN A 457 " --> pdb=" O SER A 453 " (cutoff:3.500A) Processing helix chain 'A' and resid 471 through 493 removed outlier: 4.269A pdb=" N GLN A 476 " --> pdb=" O HIS A 472 " (cutoff:3.500A) removed outlier: 4.345A pdb=" N ASN A 477 " --> pdb=" O GLU A 473 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N GLU A 492 " --> pdb=" O LEU A 488 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N GLY A 493 " --> pdb=" O PHE A 489 " (cutoff:3.500A) Processing helix chain 'A' and resid 494 through 507 removed outlier: 4.090A pdb=" N CYS A 501 " --> pdb=" O LEU A 497 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N HIS A 506 " --> pdb=" O ILE A 502 " (cutoff:3.500A) removed outlier: 5.380A pdb=" N VAL A 507 " --> pdb=" O ASP A 503 " (cutoff:3.500A) Processing helix chain 'A' and resid 519 through 542 removed outlier: 3.501A pdb=" N GLY A 523 " --> pdb=" O GLY A 519 " (cutoff:3.500A) removed outlier: 4.961A pdb=" N GLU A 524 " --> pdb=" O ARG A 520 " (cutoff:3.500A) removed outlier: 5.522A pdb=" N SER A 525 " --> pdb=" O GLU A 521 " (cutoff:3.500A) removed outlier: 6.168A pdb=" N TRP A 526 " --> pdb=" O ALA A 522 " (cutoff:3.500A) removed outlier: 6.279A pdb=" N LYS A 527 " --> pdb=" O GLY A 523 " (cutoff:3.500A) removed outlier: 5.780A pdb=" N SER A 528 " --> pdb=" O GLU A 524 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N SER A 532 " --> pdb=" O SER A 528 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N GLU A 535 " --> pdb=" O ASN A 531 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N LEU A 536 " --> pdb=" O SER A 532 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N ILE A 541 " --> pdb=" O LEU A 537 " (cutoff:3.500A) removed outlier: 3.783A pdb=" N ARG A 542 " --> pdb=" O ALA A 538 " (cutoff:3.500A) Processing helix chain 'A' and resid 544 through 553 removed outlier: 3.630A pdb=" N GLN A 550 " --> pdb=" O LYS A 546 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N SER A 552 " --> pdb=" O CYS A 548 " (cutoff:3.500A) removed outlier: 5.226A pdb=" N GLY A 553 " --> pdb=" O ALA A 549 " (cutoff:3.500A) Processing helix chain 'A' and resid 554 through 563 removed outlier: 4.392A pdb=" N GLU A 563 " --> pdb=" O ILE A 559 " (cutoff:3.500A) Processing helix chain 'A' and resid 564 through 582 removed outlier: 6.398A pdb=" N SER A 568 " --> pdb=" O ARG A 564 " (cutoff:3.500A) removed outlier: 7.167A pdb=" N SER A 569 " --> pdb=" O LEU A 565 " (cutoff:3.500A) removed outlier: 6.947A pdb=" N GLY A 570 " --> pdb=" O GLU A 566 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N VAL A 580 " --> pdb=" O HIS A 576 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N GLU A 581 " --> pdb=" O CYS A 577 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N SER A 582 " --> pdb=" O VAL A 578 " (cutoff:3.500A) Processing helix chain 'A' and resid 583 through 589 removed outlier: 3.834A pdb=" N ASN A 587 " --> pdb=" O PRO A 583 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ILE A 588 " --> pdb=" O GLU A 584 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N ILE A 589 " --> pdb=" O ALA A 585 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 583 through 589' Processing helix chain 'A' and resid 590 through 605 removed outlier: 3.545A pdb=" N LEU A 601 " --> pdb=" O ILE A 597 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N GLY A 605 " --> pdb=" O LEU A 601 " (cutoff:3.500A) Processing helix chain 'A' and resid 607 through 620 removed outlier: 3.871A pdb=" N LEU A 611 " --> pdb=" O ASN A 607 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N SER A 616 " --> pdb=" O ASP A 612 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N CYS A 618 " --> pdb=" O LEU A 614 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N VAL A 619 " --> pdb=" O CYS A 615 " (cutoff:3.500A) removed outlier: 4.502A pdb=" N CYS A 620 " --> pdb=" O SER A 616 " (cutoff:3.500A) Processing helix chain 'A' and resid 625 through 640 removed outlier: 3.864A pdb=" N HIS A 630 " --> pdb=" O ARG A 626 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N LEU A 631 " --> pdb=" O SER A 627 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N LEU A 637 " --> pdb=" O CYS A 633 " (cutoff:3.500A) Proline residue: A 638 - end of helix Processing helix chain 'A' and resid 821 through 828 removed outlier: 4.105A pdb=" N ALA A 825 " --> pdb=" O PRO A 821 " (cutoff:3.500A) removed outlier: 4.198A pdb=" N VAL A 826 " --> pdb=" O CYS A 822 " (cutoff:3.500A) removed outlier: 4.903A pdb=" N LEU A 827 " --> pdb=" O TYR A 823 " (cutoff:3.500A) Proline residue: A 828 - end of helix No H-bonds generated for 'chain 'A' and resid 821 through 828' Processing helix chain 'A' and resid 876 through 901 removed outlier: 4.306A pdb=" N LEU A 892 " --> pdb=" O ASN A 888 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N LYS A 897 " --> pdb=" O TRP A 893 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N GLU A 899 " --> pdb=" O MET A 895 " (cutoff:3.500A) removed outlier: 4.825A pdb=" N LEU A 900 " --> pdb=" O ASN A 896 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N GLY A 901 " --> pdb=" O LYS A 897 " (cutoff:3.500A) Processing helix chain 'A' and resid 929 through 946 removed outlier: 4.000A pdb=" N MET A 935 " --> pdb=" O TYR A 931 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N GLU A 938 " --> pdb=" O GLN A 934 " (cutoff:3.500A) removed outlier: 4.034A pdb=" N LEU A 944 " --> pdb=" O LEU A 940 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ALA A 945 " --> pdb=" O LYS A 941 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N LEU A 946 " --> pdb=" O THR A 942 " (cutoff:3.500A) Processing helix chain 'A' and resid 989 through 1012 removed outlier: 3.880A pdb=" N GLU A 993 " --> pdb=" O THR A 989 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N ASP A 997 " --> pdb=" O GLU A 993 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N LYS A 998 " --> pdb=" O ALA A 994 " (cutoff:3.500A) Processing helix chain 'A' and resid 1042 through 1061 removed outlier: 4.660A pdb=" N ASN A1046 " --> pdb=" O THR A1042 " (cutoff:3.500A) Processing helix chain 'A' and resid 1226 through 1231 removed outlier: 3.952A pdb=" N GLY A1231 " --> pdb=" O PHE A1227 " (cutoff:3.500A) Processing helix chain 'A' and resid 1571 through 1577 removed outlier: 4.499A pdb=" N HIS A1575 " --> pdb=" O PHE A1571 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N LYS A1576 " --> pdb=" O LYS A1572 " (cutoff:3.500A) removed outlier: 5.798A pdb=" N ASN A1577 " --> pdb=" O SER A1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1571 through 1577' Processing helix chain 'A' and resid 1640 through 1648 removed outlier: 4.444A pdb=" N LEU A1644 " --> pdb=" O ASP A1640 " (cutoff:3.500A) removed outlier: 4.933A pdb=" N THR A1645 " --> pdb=" O ILE A1641 " (cutoff:3.500A) removed outlier: 5.254A pdb=" N GLU A1646 " --> pdb=" O LEU A1642 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N GLN A1647 " --> pdb=" O GLU A1643 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N GLU A1648 " --> pdb=" O LEU A1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1640 through 1648' Processing helix chain 'A' and resid 1649 through 1666 removed outlier: 3.841A pdb=" N HIS A1654 " --> pdb=" O LEU A1650 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SER A1662 " --> pdb=" O LEU A1658 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N CYS A1665 " --> pdb=" O TYR A1661 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N ALA A1666 " --> pdb=" O SER A1662 " (cutoff:3.500A) Processing helix chain 'A' and resid 1669 through 1680 removed outlier: 4.608A pdb=" N HIS A1674 " --> pdb=" O HIS A1670 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N SER A1678 " --> pdb=" O HIS A1674 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N HIS A1679 " --> pdb=" O ALA A1675 " (cutoff:3.500A) Processing helix chain 'A' and resid 1681 through 1691 removed outlier: 4.315A pdb=" N LEU A1685 " --> pdb=" O ASP A1681 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N GLU A1690 " --> pdb=" O LEU A1686 " (cutoff:3.500A) Processing helix chain 'A' and resid 1695 through 1710 removed outlier: 3.757A pdb=" N ALA A1700 " --> pdb=" O GLY A1696 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N TYR A1702 " --> pdb=" O LEU A1698 " (cutoff:3.500A) Processing helix chain 'A' and resid 1711 through 1723 removed outlier: 4.373A pdb=" N THR A1716 " --> pdb=" O SER A1712 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA A1717 " --> pdb=" O SER A1713 " (cutoff:3.500A) removed outlier: 4.254A pdb=" N MET A1721 " --> pdb=" O ALA A1717 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N ASN A1722 " --> pdb=" O ARG A1718 " (cutoff:3.500A) removed outlier: 6.252A pdb=" N ASN A1723 " --> pdb=" O LEU A1719 " (cutoff:3.500A) Processing helix chain 'A' and resid 1730 through 1736 removed outlier: 4.344A pdb=" N ILE A1736 " --> pdb=" O GLU A1732 " (cutoff:3.500A) Processing helix chain 'A' and resid 1771 through 1776 Processing helix chain 'A' and resid 1783 through 1803 removed outlier: 3.709A pdb=" N LEU A1787 " --> pdb=" O PRO A1783 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N ALA A1789 " --> pdb=" O ASP A1785 " (cutoff:3.500A) removed outlier: 4.117A pdb=" N ILE A1792 " --> pdb=" O LYS A1788 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N GLU A1801 " --> pdb=" O GLU A1797 " (cutoff:3.500A) Processing helix chain 'A' and resid 1813 through 1832 removed outlier: 3.614A pdb=" N LEU A1817 " --> pdb=" O THR A1813 " (cutoff:3.500A) Proline residue: A1820 - end of helix removed outlier: 4.351A pdb=" N LEU A1824 " --> pdb=" O PRO A1820 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N MET A1831 " --> pdb=" O THR A1827 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N GLY A1832 " --> pdb=" O LEU A1828 " (cutoff:3.500A) Processing helix chain 'A' and resid 1836 through 1847 removed outlier: 4.197A pdb=" N HIS A1841 " --> pdb=" O GLU A1837 " (cutoff:3.500A) removed outlier: 4.139A pdb=" N GLN A1844 " --> pdb=" O LYS A1840 " (cutoff:3.500A) removed outlier: 4.258A pdb=" N LEU A1845 " --> pdb=" O HIS A1841 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N ILE A1846 " --> pdb=" O ILE A1842 " (cutoff:3.500A) Processing helix chain 'A' and resid 1901 through 1952 removed outlier: 4.222A pdb=" N GLN A1906 " --> pdb=" O PRO A1902 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU A1909 " --> pdb=" O LEU A1905 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N TYR A1913 " --> pdb=" O LEU A1909 " (cutoff:3.500A) removed outlier: 3.683A pdb=" N LEU A1914 " --> pdb=" O LEU A1910 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N GLN A1918 " --> pdb=" O LEU A1914 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N VAL A1919 " --> pdb=" O CYS A1915 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ARG A1920 " --> pdb=" O ASP A1916 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N GLU A1924 " --> pdb=" O ARG A1920 " (cutoff:3.500A) removed outlier: 4.809A pdb=" N ASP A1932 " --> pdb=" O ALA A1928 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N VAL A1934 " --> pdb=" O SER A1930 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N LEU A1937 " --> pdb=" O PHE A1933 " (cutoff:3.500A) removed outlier: 4.608A pdb=" N ASP A1939 " --> pdb=" O ALA A1935 " (cutoff:3.500A) removed outlier: 5.217A pdb=" N ASN A1940 " --> pdb=" O LYS A1936 " (cutoff:3.500A) removed outlier: 3.745A pdb=" N GLN A1941 " --> pdb=" O LEU A1937 " (cutoff:3.500A) removed outlier: 4.347A pdb=" N ARG A1942 " --> pdb=" O GLN A1938 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N GLN A1950 " --> pdb=" O ASN A1946 " (cutoff:3.500A) Processing helix chain 'A' and resid 1991 through 1998 removed outlier: 3.525A pdb=" N GLN A1996 " --> pdb=" O GLU A1992 " (cutoff:3.500A) removed outlier: 4.703A pdb=" N LEU A1998 " --> pdb=" O ARG A1994 " (cutoff:3.500A) Processing helix chain 'A' and resid 1999 through 2013 removed outlier: 3.843A pdb=" N ILE A2010 " --> pdb=" O THR A2006 " (cutoff:3.500A) removed outlier: 4.581A pdb=" N GLU A2011 " --> pdb=" O HIS A2007 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N LEU A2012 " --> pdb=" O CYS A2008 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N ASP A2013 " --> pdb=" O GLY A2009 " (cutoff:3.500A) Processing helix chain 'A' and resid 2024 through 2038 removed outlier: 5.236A pdb=" N GLY A2028 " --> pdb=" O LEU A2024 " (cutoff:3.500A) removed outlier: 4.598A pdb=" N ARG A2029 " --> pdb=" O THR A2025 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N LEU A2030 " --> pdb=" O ILE A2026 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LEU A2031 " --> pdb=" O ARG A2027 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N GLU A2035 " --> pdb=" O LEU A2031 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N THR A2038 " --> pdb=" O VAL A2034 " (cutoff:3.500A) Processing helix chain 'A' and resid 2058 through 2074 removed outlier: 3.858A pdb=" N LEU A2062 " --> pdb=" O THR A2058 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N SER A2064 " --> pdb=" O GLN A2060 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N VAL A2068 " --> pdb=" O SER A2064 " (cutoff:3.500A) removed outlier: 3.820A pdb=" N GLU A2073 " --> pdb=" O ARG A2069 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N SER A2074 " --> pdb=" O TRP A2070 " (cutoff:3.500A) Processing helix chain 'A' and resid 2078 through 2095 removed outlier: 4.018A pdb=" N VAL A2082 " --> pdb=" O ASP A2078 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N LEU A2088 " --> pdb=" O ALA A2084 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N GLN A2092 " --> pdb=" O LEU A2088 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N TYR A2093 " --> pdb=" O LEU A2089 " (cutoff:3.500A) removed outlier: 4.174A pdb=" N GLY A2095 " --> pdb=" O ARG A2091 " (cutoff:3.500A) Processing helix chain 'A' and resid 2096 through 2107 Proline residue: A2104 - end of helix removed outlier: 5.989A pdb=" N TYR A2107 " --> pdb=" O LEU A2103 " (cutoff:3.500A) Processing helix chain 'A' and resid 2110 through 2132 removed outlier: 3.805A pdb=" N VAL A2114 " --> pdb=" O ASN A2110 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N GLU A2115 " --> pdb=" O GLY A2111 " (cutoff:3.500A) removed outlier: 5.821A pdb=" N ASP A2116 " --> pdb=" O VAL A2112 " (cutoff:3.500A) removed outlier: 4.019A pdb=" N THR A2117 " --> pdb=" O SER A2113 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N ILE A2118 " --> pdb=" O VAL A2114 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N ASN A2119 " --> pdb=" O GLU A2115 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N GLN A2126 " --> pdb=" O ALA A2122 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N ILE A2127 " --> pdb=" O SER A2123 " (cutoff:3.500A) removed outlier: 4.833A pdb=" N SER A2132 " --> pdb=" O ARG A2128 " (cutoff:3.500A) Processing helix chain 'A' and resid 2140 through 2153 removed outlier: 3.878A pdb=" N ASN A2153 " --> pdb=" O ASP A2149 " (cutoff:3.500A) Processing helix chain 'A' and resid 2154 through 2160 removed outlier: 4.208A pdb=" N GLN A2158 " --> pdb=" O LYS A2154 " (cutoff:3.500A) removed outlier: 5.844A pdb=" N HIS A2159 " --> pdb=" O VAL A2155 " (cutoff:3.500A) Proline residue: A2160 - end of helix No H-bonds generated for 'chain 'A' and resid 2154 through 2160' Processing helix chain 'A' and resid 2161 through 2167 removed outlier: 4.071A pdb=" N GLY A2167 " --> pdb=" O MET A2163 " (cutoff:3.500A) Processing helix chain 'A' and resid 2168 through 2181 removed outlier: 3.974A pdb=" N VAL A2172 " --> pdb=" O MET A2168 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N GLY A2181 " --> pdb=" O VAL A2177 " (cutoff:3.500A) Processing helix chain 'A' and resid 2191 through 2209 removed outlier: 4.040A pdb=" N ALA A2195 " --> pdb=" O PRO A2191 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N ASN A2196 " --> pdb=" O LYS A2192 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N ARG A2199 " --> pdb=" O ALA A2195 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N PHE A2200 " --> pdb=" O ASN A2196 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N LEU A2201 " --> pdb=" O CYS A2197 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N ARG A2206 " --> pdb=" O CYS A2202 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N ILE A2207 " --> pdb=" O TYR A2203 " (cutoff:3.500A) removed outlier: 4.923A pdb=" N SER A2208 " --> pdb=" O PHE A2204 " (cutoff:3.500A) removed outlier: 5.266A pdb=" N ARG A2209 " --> pdb=" O CYS A2205 " (cutoff:3.500A) Processing helix chain 'A' and resid 2210 through 2217 removed outlier: 4.251A pdb=" N ASP A2217 " --> pdb=" O LYS A2213 " (cutoff:3.500A) Processing helix chain 'A' and resid 2218 through 2225 removed outlier: 4.620A pdb=" N GLU A2224 " --> pdb=" O SER A2220 " (cutoff:3.500A) removed outlier: 4.442A pdb=" N ASN A2225 " --> pdb=" O TYR A2221 " (cutoff:3.500A) Processing helix chain 'A' and resid 2239 through 2249 removed outlier: 4.146A pdb=" N VAL A2243 " --> pdb=" O THR A2239 " (cutoff:3.500A) removed outlier: 4.473A pdb=" N ALA A2244 " --> pdb=" O PRO A2240 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N VAL A2248 " --> pdb=" O ALA A2244 " (cutoff:3.500A) Processing helix chain 'A' and resid 2251 through 2258 removed outlier: 3.769A pdb=" N LEU A2258 " --> pdb=" O LEU A2254 " (cutoff:3.500A) Processing helix chain 'A' and resid 2259 through 2274 removed outlier: 3.676A pdb=" N LEU A2263 " --> pdb=" O ARG A2259 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N LYS A2265 " --> pdb=" O PRO A2261 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N VAL A2266 " --> pdb=" O ASP A2262 " (cutoff:3.500A) removed outlier: 4.428A pdb=" N GLY A2274 " --> pdb=" O LEU A2270 " (cutoff:3.500A) Processing helix chain 'A' and resid 2295 through 2308 removed outlier: 3.583A pdb=" N TYR A2299 " --> pdb=" O GLU A2295 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N ASP A2301 " --> pdb=" O GLU A2297 " (cutoff:3.500A) removed outlier: 4.463A pdb=" N PHE A2305 " --> pdb=" O ASP A2301 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N ALA A2306 " --> pdb=" O PHE A2302 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N VAL A2307 " --> pdb=" O LEU A2303 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N PHE A2308 " --> pdb=" O ARG A2304 " (cutoff:3.500A) Processing helix chain 'A' and resid 2314 through 2329 removed outlier: 4.642A pdb=" N ARG A2328 " --> pdb=" O LEU A2324 " (cutoff:3.500A) Proline residue: A2329 - end of helix Processing helix chain 'A' and resid 2343 through 2354 removed outlier: 4.537A pdb=" N MET A2348 " --> pdb=" O LEU A2344 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N GLU A2349 " --> pdb=" O LEU A2345 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N ILE A2352 " --> pdb=" O MET A2348 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N LYS A2353 " --> pdb=" O GLU A2349 " (cutoff:3.500A) removed outlier: 4.234A pdb=" N ILE A2354 " --> pdb=" O GLU A2350 " (cutoff:3.500A) Processing helix chain 'A' and resid 2387 through 2404 removed outlier: 3.690A pdb=" N THR A2391 " --> pdb=" O ASN A2387 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N ALA A2394 " --> pdb=" O MET A2390 " (cutoff:3.500A) removed outlier: 4.718A pdb=" N ALA A2404 " --> pdb=" O LEU A2400 " (cutoff:3.500A) Processing helix chain 'A' and resid 2408 through 2413 removed outlier: 3.535A pdb=" N ALA A2412 " --> pdb=" O HIS A2408 " (cutoff:3.500A) Processing helix chain 'A' and resid 2414 through 2428 removed outlier: 5.303A pdb=" N ILE A2418 " --> pdb=" O LYS A2414 " (cutoff:3.500A) removed outlier: 6.583A pdb=" N ARG A2419 " --> pdb=" O GLY A2415 " (cutoff:3.500A) removed outlier: 4.716A pdb=" N ILE A2420 " --> pdb=" O GLU A2416 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N ARG A2421 " --> pdb=" O ALA A2417 " (cutoff:3.500A) Processing helix chain 'A' and resid 2432 through 2437 Processing helix chain 'A' and resid 2462 through 2477 removed outlier: 4.354A pdb=" N LYS A2466 " --> pdb=" O CYS A2462 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N LEU A2471 " --> pdb=" O ALA A2467 " (cutoff:3.500A) Processing helix chain 'A' and resid 2481 through 2489 removed outlier: 3.885A pdb=" N LEU A2485 " --> pdb=" O VAL A2481 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N LEU A2486 " --> pdb=" O GLN A2482 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N LEU A2488 " --> pdb=" O PHE A2484 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N LEU A2489 " --> pdb=" O LEU A2485 " (cutoff:3.500A) Processing helix chain 'A' and resid 2492 through 2500 removed outlier: 3.633A pdb=" N ASP A2496 " --> pdb=" O GLY A2492 " (cutoff:3.500A) removed outlier: 4.223A pdb=" N LEU A2497 " --> pdb=" O PHE A2493 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N ARG A2498 " --> pdb=" O LEU A2494 " (cutoff:3.500A) Processing helix chain 'A' and resid 2511 through 2528 removed outlier: 4.549A pdb=" N ALA A2516 " --> pdb=" O ASP A2512 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N LEU A2517 " --> pdb=" O MET A2513 " (cutoff:3.500A) removed outlier: 4.627A pdb=" N ASN A2518 " --> pdb=" O ALA A2514 " (cutoff:3.500A) removed outlier: 5.352A pdb=" N CYS A2522 " --> pdb=" O ASN A2518 " (cutoff:3.500A) removed outlier: 4.446A pdb=" N THR A2523 " --> pdb=" O ARG A2519 " (cutoff:3.500A) removed outlier: 4.959A pdb=" N VAL A2525 " --> pdb=" O LEU A2521 " (cutoff:3.500A) Proline residue: A2527 - end of helix Processing helix chain 'A' and resid 2537 through 2553 removed outlier: 3.669A pdb=" N HIS A2541 " --> pdb=" O ALA A2537 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N ILE A2546 " --> pdb=" O HIS A2542 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N HIS A2551 " --> pdb=" O ASP A2547 " (cutoff:3.500A) removed outlier: 4.061A pdb=" N THR A2552 " --> pdb=" O SER A2548 " (cutoff:3.500A) Processing helix chain 'A' and resid 2559 through 2576 removed outlier: 4.827A pdb=" N THR A2563 " --> pdb=" O GLY A2559 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N LYS A2564 " --> pdb=" O CYS A2560 " (cutoff:3.500A) removed outlier: 4.055A pdb=" N ALA A2565 " --> pdb=" O SER A2561 " (cutoff:3.500A) removed outlier: 3.797A pdb=" N VAL A2572 " --> pdb=" O ASP A2568 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N LEU A2574 " --> pdb=" O ILE A2570 " (cutoff:3.500A) removed outlier: 3.907A pdb=" N LEU A2575 " --> pdb=" O GLU A2571 " (cutoff:3.500A) removed outlier: 4.739A pdb=" N SER A2576 " --> pdb=" O VAL A2572 " (cutoff:3.500A) Processing helix chain 'A' and resid 2583 through 2601 removed outlier: 4.234A pdb=" N ARG A2591 " --> pdb=" O GLN A2587 " (cutoff:3.500A) removed outlier: 3.792A pdb=" N ARG A2592 " --> pdb=" O HIS A2588 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LEU A2593 " --> pdb=" O LEU A2589 " (cutoff:3.500A) removed outlier: 6.192A pdb=" N VAL A2594 " --> pdb=" O LEU A2590 " (cutoff:3.500A) removed outlier: 4.155A pdb=" N PHE A2595 " --> pdb=" O ARG A2591 " (cutoff:3.500A) removed outlier: 4.185A pdb=" N ASP A2596 " --> pdb=" O ARG A2592 " (cutoff:3.500A) Proline residue: A2598 - end of helix removed outlier: 4.124A pdb=" N ASN A2601 " --> pdb=" O VAL A2597 " (cutoff:3.500A) Processing helix chain 'A' and resid 2605 through 2627 removed outlier: 3.696A pdb=" N LYS A2609 " --> pdb=" O LYS A2605 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N TYR A2615 " --> pdb=" O LEU A2611 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N ARG A2617 " --> pdb=" O ASN A2613 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N CYS A2618 " --> pdb=" O HIS A2614 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N LYS A2620 " --> pdb=" O GLU A2616 " (cutoff:3.500A) removed outlier: 5.033A pdb=" N TYR A2621 " --> pdb=" O ARG A2617 " (cutoff:3.500A) removed outlier: 4.489A pdb=" N TYR A2622 " --> pdb=" O CYS A2618 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N CYS A2623 " --> pdb=" O TRP A2619 " (cutoff:3.500A) Proline residue: A2625 - end of helix Processing helix chain 'A' and resid 2635 through 2653 removed outlier: 3.822A pdb=" N ASP A2651 " --> pdb=" O TRP A2647 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N ALA A2652 " --> pdb=" O GLY A2648 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LEU A2653 " --> pdb=" O ILE A2649 " (cutoff:3.500A) Processing helix chain 'A' and resid 2658 through 2678 removed outlier: 4.680A pdb=" N LEU A2662 " --> pdb=" O TYR A2658 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N PHE A2663 " --> pdb=" O GLU A2659 " (cutoff:3.500A) removed outlier: 4.499A pdb=" N LEU A2665 " --> pdb=" O GLU A2661 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N ALA A2666 " --> pdb=" O LEU A2662 " (cutoff:3.500A) Proline residue: A2668 - end of helix removed outlier: 4.130A pdb=" N SER A2671 " --> pdb=" O LEU A2667 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N ALA A2672 " --> pdb=" O PRO A2668 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N ALA A2676 " --> pdb=" O ALA A2672 " (cutoff:3.500A) removed outlier: 4.883A pdb=" N LEU A2677 " --> pdb=" O VAL A2673 " (cutoff:3.500A) Proline residue: A2678 - end of helix Processing helix chain 'A' and resid 2715 through 2739 removed outlier: 3.608A pdb=" N GLU A2719 " --> pdb=" O PRO A2715 " (cutoff:3.500A) removed outlier: 4.793A pdb=" N TYR A2720 " --> pdb=" O GLU A2716 " (cutoff:3.500A) removed outlier: 5.133A pdb=" N PHE A2721 " --> pdb=" O LYS A2717 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N LYS A2737 " --> pdb=" O TRP A2733 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N ALA A2739 " --> pdb=" O MET A2735 " (cutoff:3.500A) Processing helix chain 'A' and resid 2765 through 2774 removed outlier: 3.888A pdb=" N LYS A2769 " --> pdb=" O SER A2765 " (cutoff:3.500A) removed outlier: 5.652A pdb=" N GLU A2770 " --> pdb=" O GLU A2766 " (cutoff:3.500A) removed outlier: 5.200A pdb=" N ILE A2771 " --> pdb=" O LYS A2767 " (cutoff:3.500A) removed outlier: 4.662A pdb=" N TYR A2772 " --> pdb=" O GLU A2768 " (cutoff:3.500A) Processing helix chain 'A' and resid 2775 through 2786 removed outlier: 4.035A pdb=" N SER A2779 " --> pdb=" O PRO A2775 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N LEU A2780 " --> pdb=" O ILE A2776 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N LYS A2781 " --> pdb=" O LYS A2777 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N THR A2782 " --> pdb=" O GLU A2778 " (cutoff:3.500A) removed outlier: 4.231A pdb=" N MET A2783 " --> pdb=" O SER A2779 " (cutoff:3.500A) removed outlier: 4.514A pdb=" N ALA A2785 " --> pdb=" O LYS A2781 " (cutoff:3.500A) removed outlier: 4.746A pdb=" N TRP A2786 " --> pdb=" O THR A2782 " (cutoff:3.500A) Processing helix chain 'A' and resid 2836 through 2865 removed outlier: 5.337A pdb=" N ALA A2840 " --> pdb=" O ARG A2836 " (cutoff:3.500A) removed outlier: 4.957A pdb=" N MET A2841 " --> pdb=" O ASP A2837 " (cutoff:3.500A) removed outlier: 3.907A pdb=" N LYS A2855 " --> pdb=" O ASN A2851 " (cutoff:3.500A) removed outlier: 4.303A pdb=" N LEU A2861 " --> pdb=" O LYS A2857 " (cutoff:3.500A) removed outlier: 5.223A pdb=" N GLU A2862 " --> pdb=" O LYS A2858 " (cutoff:3.500A) removed outlier: 5.533A pdb=" N SER A2863 " --> pdb=" O LEU A2859 " (cutoff:3.500A) removed outlier: 5.008A pdb=" N LYS A2864 " --> pdb=" O GLU A2860 " (cutoff:3.500A) removed outlier: 6.071A pdb=" N GLY A2865 " --> pdb=" O LEU A2861 " (cutoff:3.500A) Processing helix chain 'A' and resid 2879 through 2901 removed outlier: 4.542A pdb=" N LYS A2883 " --> pdb=" O THR A2879 " (cutoff:3.500A) removed outlier: 5.673A pdb=" N LYS A2885 " --> pdb=" O LYS A2881 " (cutoff:3.500A) removed outlier: 5.149A pdb=" N ASP A2886 " --> pdb=" O GLU A2882 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N GLU A2888 " --> pdb=" O ALA A2884 " (cutoff:3.500A) removed outlier: 4.290A pdb=" N LYS A2889 " --> pdb=" O LYS A2885 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N ALA A2890 " --> pdb=" O ASP A2886 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N GLN A2891 " --> pdb=" O ARG A2887 " (cutoff:3.500A) removed outlier: 4.590A pdb=" N ASP A2892 " --> pdb=" O GLU A2888 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N ILE A2893 " --> pdb=" O LYS A2889 " (cutoff:3.500A) removed outlier: 4.811A pdb=" N LEU A2894 " --> pdb=" O ALA A2890 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N LEU A2897 " --> pdb=" O ILE A2893 " (cutoff:3.500A) removed outlier: 3.522A pdb=" N GLN A2898 " --> pdb=" O LEU A2894 " (cutoff:3.500A) Processing helix chain 'A' and resid 2982 through 3004 Proline residue: A2990 - end of helix removed outlier: 4.043A pdb=" N GLU A3001 " --> pdb=" O ALA A2997 " (cutoff:3.500A) removed outlier: 4.803A pdb=" N LYS A3002 " --> pdb=" O SER A2998 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N GLU A3003 " --> pdb=" O ASN A2999 " (cutoff:3.500A) removed outlier: 5.501A pdb=" N MET A3004 " --> pdb=" O LYS A3000 " (cutoff:3.500A) Processing helix chain 'A' and resid 3010 through 3025 removed outlier: 3.684A pdb=" N LEU A3015 " --> pdb=" O LYS A3011 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N PHE A3023 " --> pdb=" O ARG A3019 " (cutoff:3.500A) Processing helix chain 'A' and resid 3034 through 3052 removed outlier: 4.123A pdb=" N GLN A3039 " --> pdb=" O HIS A3035 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N THR A3040 " --> pdb=" O ILE A3036 " (cutoff:3.500A) removed outlier: 3.785A pdb=" N ASP A3042 " --> pdb=" O GLY A3038 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N ARG A3044 " --> pdb=" O THR A3040 " (cutoff:3.500A) removed outlier: 4.152A pdb=" N THR A3045 " --> pdb=" O LEU A3041 " (cutoff:3.500A) removed outlier: 4.122A pdb=" N LEU A3051 " --> pdb=" O MET A3047 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N GLU A3052 " --> pdb=" O LYS A3048 " (cutoff:3.500A) Processing helix chain 'A' and resid 3061 through 3082 removed outlier: 5.054A pdb=" N ALA A3065 " --> pdb=" O PHE A3061 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N ALA A3066 " --> pdb=" O LEU A3062 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N GLU A3067 " --> pdb=" O ASP A3063 " (cutoff:3.500A) removed outlier: 5.401A pdb=" N ASP A3068 " --> pdb=" O ASN A3064 " (cutoff:3.500A) removed outlier: 5.742A pdb=" N LEU A3069 " --> pdb=" O ALA A3065 " (cutoff:3.500A) removed outlier: 5.220A pdb=" N GLU A3070 " --> pdb=" O ALA A3066 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N THR A3082 " --> pdb=" O GLN A3078 " (cutoff:3.500A) Processing helix chain 'A' and resid 3102 through 3114 removed outlier: 4.614A pdb=" N LEU A3106 " --> pdb=" O LEU A3102 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N SER A3107 " --> pdb=" O LEU A3103 " (cutoff:3.500A) removed outlier: 4.232A pdb=" N SER A3108 " --> pdb=" O PRO A3104 " (cutoff:3.500A) removed outlier: 4.770A pdb=" N LEU A3109 " --> pdb=" O MET A3105 " (cutoff:3.500A) Processing helix chain 'A' and resid 3124 through 3144 removed outlier: 4.299A pdb=" N GLN A3128 " --> pdb=" O LEU A3124 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N SER A3137 " --> pdb=" O ARG A3133 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N LEU A3138 " --> pdb=" O ILE A3134 " (cutoff:3.500A) Processing helix chain 'A' and resid 3151 through 3164 removed outlier: 4.272A pdb=" N ALA A3155 " --> pdb=" O ARG A3151 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N LEU A3156 " --> pdb=" O GLN A3152 " (cutoff:3.500A) removed outlier: 4.042A pdb=" N PHE A3163 " --> pdb=" O CYS A3159 " (cutoff:3.500A) Processing helix chain 'A' and resid 3171 through 3183 removed outlier: 3.680A pdb=" N ASN A3180 " --> pdb=" O LEU A3176 " (cutoff:3.500A) removed outlier: 4.132A pdb=" N ILE A3181 " --> pdb=" O ASP A3177 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N TYR A3182 " --> pdb=" O LYS A3178 " (cutoff:3.500A) removed outlier: 4.760A pdb=" N SER A3183 " --> pdb=" O HIS A3179 " (cutoff:3.500A) Processing helix chain 'A' and resid 3613 through 3629 removed outlier: 4.226A pdb=" N ALA A3617 " --> pdb=" O PRO A3613 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N VAL A3618 " --> pdb=" O ARG A3614 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N LYS A3627 " --> pdb=" O GLN A3623 " (cutoff:3.500A) Processing helix chain 'A' and resid 3637 through 3647 removed outlier: 4.415A pdb=" N ILE A3642 " --> pdb=" O GLU A3638 " (cutoff:3.500A) removed outlier: 4.149A pdb=" N LYS A3647 " --> pdb=" O GLU A3643 " (cutoff:3.500A) Processing helix chain 'A' and resid 3663 through 3679 removed outlier: 3.653A pdb=" N LEU A3668 " --> pdb=" O PRO A3664 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ARG A3674 " --> pdb=" O LEU A3670 " (cutoff:3.500A) removed outlier: 3.650A pdb=" N LEU A3677 " --> pdb=" O SER A3673 " (cutoff:3.500A) removed outlier: 6.085A pdb=" N GLU A3679 " --> pdb=" O THR A3675 " (cutoff:3.500A) Processing helix chain 'A' and resid 3686 through 3700 removed outlier: 3.840A pdb=" N MET A3690 " --> pdb=" O ASP A3686 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N ALA A3691 " --> pdb=" O PHE A3687 " (cutoff:3.500A) removed outlier: 4.907A pdb=" N ASP A3694 " --> pdb=" O MET A3690 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N ILE A3695 " --> pdb=" O ALA A3691 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N MET A3696 " --> pdb=" O TYR A3692 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N ALA A3697 " --> pdb=" O ALA A3693 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N SER A3699 " --> pdb=" O ILE A3695 " (cutoff:3.500A) removed outlier: 4.811A pdb=" N CYS A3700 " --> pdb=" O MET A3696 " (cutoff:3.500A) Processing helix chain 'A' and resid 3714 through 3734 removed outlier: 4.362A pdb=" N LYS A3718 " --> pdb=" O SER A3714 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N GLU A3721 " --> pdb=" O GLU A3717 " (cutoff:3.500A) removed outlier: 4.897A pdb=" N LYS A3722 " --> pdb=" O LYS A3718 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N GLN A3723 " --> pdb=" O GLU A3719 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ALA A3730 " --> pdb=" O LEU A3726 " (cutoff:3.500A) removed outlier: 4.875A pdb=" N LEU A3732 " --> pdb=" O GLN A3728 " (cutoff:3.500A) removed outlier: 3.695A pdb=" N ASP A3734 " --> pdb=" O ALA A3730 " (cutoff:3.500A) Processing helix chain 'A' and resid 3736 through 3749 removed outlier: 3.755A pdb=" N MET A3740 " --> pdb=" O GLY A3736 " (cutoff:3.500A) removed outlier: 4.063A pdb=" N VAL A3741 " --> pdb=" O ALA A3737 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N LEU A3742 " --> pdb=" O ALA A3738 " (cutoff:3.500A) removed outlier: 3.973A pdb=" N THR A3744 " --> pdb=" O MET A3740 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ILE A3745 " --> pdb=" O VAL A3741 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N SER A3746 " --> pdb=" O LEU A3742 " (cutoff:3.500A) removed outlier: 4.235A pdb=" N SER A3748 " --> pdb=" O THR A3744 " (cutoff:3.500A) removed outlier: 4.860A pdb=" N LYS A3749 " --> pdb=" O ILE A3745 " (cutoff:3.500A) Processing helix chain 'A' and resid 3753 through 3768 removed outlier: 3.811A pdb=" N ALA A3758 " --> pdb=" O PRO A3754 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N THR A3759 " --> pdb=" O MET A3755 " (cutoff:3.500A) removed outlier: 4.758A pdb=" N LYS A3761 " --> pdb=" O ALA A3757 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N LEU A3762 " --> pdb=" O ALA A3758 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N LEU A3767 " --> pdb=" O GLY A3763 " (cutoff:3.500A) Processing helix chain 'A' and resid 3771 through 3785 removed outlier: 4.302A pdb=" N GLN A3775 " --> pdb=" O ASN A3771 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N GLN A3776 " --> pdb=" O SER A3772 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N LEU A3779 " --> pdb=" O GLN A3775 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N LYS A3783 " --> pdb=" O LEU A3779 " (cutoff:3.500A) Processing helix chain 'A' and resid 3787 through 3801 removed outlier: 4.774A pdb=" N PHE A3791 " --> pdb=" O ASP A3787 " (cutoff:3.500A) removed outlier: 4.745A pdb=" N SER A3800 " --> pdb=" O GLY A3796 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N CYS A3801 " --> pdb=" O LEU A3797 " (cutoff:3.500A) Processing helix chain 'A' and resid 3805 through 3819 removed outlier: 3.764A pdb=" N PHE A3809 " --> pdb=" O ASP A3805 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N GLU A3816 " --> pdb=" O GLN A3812 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N LEU A3818 " --> pdb=" O LYS A3814 " (cutoff:3.500A) Processing helix chain 'A' and resid 3829 through 3849 removed outlier: 5.734A pdb=" N ASP A3833 " --> pdb=" O LYS A3829 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ASP A3834 " --> pdb=" O VAL A3830 " (cutoff:3.500A) removed outlier: 6.951A pdb=" N GLU A3835 " --> pdb=" O LEU A3831 " (cutoff:3.500A) removed outlier: 6.308A pdb=" N PHE A3836 " --> pdb=" O GLN A3832 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N THR A3837 " --> pdb=" O ASP A3833 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ASP A3839 " --> pdb=" O GLU A3835 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE A3841 " --> pdb=" O THR A3837 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N PHE A3843 " --> pdb=" O ASP A3839 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LEU A3847 " --> pdb=" O PHE A3843 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N CYS A3848 " --> pdb=" O LEU A3844 " (cutoff:3.500A) Processing helix chain 'A' and resid 3852 through 3861 removed outlier: 4.209A pdb=" N ASN A3857 " --> pdb=" O SER A3853 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N LEU A3859 " --> pdb=" O PHE A3855 " (cutoff:3.500A) removed outlier: 4.217A pdb=" N ARG A3860 " --> pdb=" O GLN A3856 " (cutoff:3.500A) removed outlier: 4.246A pdb=" N THR A3861 " --> pdb=" O ASN A3857 " (cutoff:3.500A) Processing helix chain 'A' and resid 3870 through 3895 removed outlier: 3.560A pdb=" N TYR A3878 " --> pdb=" O SER A3874 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N LEU A3879 " --> pdb=" O THR A3875 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SER A3885 " --> pdb=" O ARG A3881 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N TYR A3893 " --> pdb=" O PHE A3889 " (cutoff:3.500A) removed outlier: 5.391A pdb=" N GLY A3895 " --> pdb=" O TRP A3891 " (cutoff:3.500A) Processing helix chain 'A' and resid 3900 through 3926 removed outlier: 3.682A pdb=" N ASN A3906 " --> pdb=" O GLN A3902 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N LYS A3909 " --> pdb=" O ARG A3905 " (cutoff:3.500A) removed outlier: 3.798A pdb=" N ALA A3910 " --> pdb=" O ASN A3906 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N VAL A3913 " --> pdb=" O LYS A3909 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N ALA A3914 " --> pdb=" O ALA A3910 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N TYR A3924 " --> pdb=" O THR A3920 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N ILE A3925 " --> pdb=" O LEU A3921 " (cutoff:3.500A) Processing helix chain 'A' and resid 3929 through 3940 removed outlier: 3.607A pdb=" N SER A3935 " --> pdb=" O GLY A3931 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N ALA A3937 " --> pdb=" O GLN A3933 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N SER A3939 " --> pdb=" O SER A3935 " (cutoff:3.500A) removed outlier: 5.507A pdb=" N ARG A3940 " --> pdb=" O LEU A3936 " (cutoff:3.500A) Processing helix chain 'A' and resid 3941 through 3961 removed outlier: 3.831A pdb=" N GLY A3947 " --> pdb=" O ASP A3943 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N HIS A3954 " --> pdb=" O HIS A3950 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N GLN A3956 " --> pdb=" O PHE A3952 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N MET A3957 " --> pdb=" O ALA A3953 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N SER A3960 " --> pdb=" O GLN A3956 " (cutoff:3.500A) removed outlier: 4.364A pdb=" N GLN A3961 " --> pdb=" O MET A3957 " (cutoff:3.500A) Processing helix chain 'A' and resid 3962 through 3989 removed outlier: 4.442A pdb=" N ILE A3966 " --> pdb=" O ASP A3962 " (cutoff:3.500A) removed outlier: 5.129A pdb=" N GLU A3967 " --> pdb=" O SER A3963 " (cutoff:3.500A) removed outlier: 5.284A pdb=" N LEU A3968 " --> pdb=" O SER A3964 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N LYS A3970 " --> pdb=" O ILE A3966 " (cutoff:3.500A) removed outlier: 4.479A pdb=" N GLU A3971 " --> pdb=" O GLU A3967 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N GLN A3976 " --> pdb=" O LEU A3972 " (cutoff:3.500A) removed outlier: 3.575A pdb=" N VAL A3980 " --> pdb=" O GLN A3976 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N VAL A3981 " --> pdb=" O LYS A3977 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N MET A3982 " --> pdb=" O ASP A3978 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N LEU A3987 " --> pdb=" O LEU A3983 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N GLU A3988 " --> pdb=" O LEU A3984 " (cutoff:3.500A) removed outlier: 5.829A pdb=" N GLY A3989 " --> pdb=" O SER A3985 " (cutoff:3.500A) Processing helix chain 'A' and resid 3994 through 4008 removed outlier: 3.606A pdb=" N LYS A3998 " --> pdb=" O GLY A3994 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N SER A4008 " --> pdb=" O LEU A4004 " (cutoff:3.500A) Processing helix chain 'A' and resid 4009 through 4028 removed outlier: 4.753A pdb=" N MET A4013 " --> pdb=" O ASN A4009 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N ILE A4014 " --> pdb=" O ASN A4010 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N PHE A4018 " --> pdb=" O ILE A4014 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N ASP A4019 " --> pdb=" O LEU A4015 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N PHE A4021 " --> pdb=" O PHE A4017 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N LYS A4023 " --> pdb=" O ASP A4019 " (cutoff:3.500A) removed outlier: 4.053A pdb=" N LEU A4024 " --> pdb=" O MET A4020 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N LYS A4025 " --> pdb=" O PHE A4021 " (cutoff:3.500A) removed outlier: 4.848A pdb=" N ASP A4026 " --> pdb=" O LEU A4022 " (cutoff:3.500A) Processing helix chain 'A' and resid 4030 through 4038 removed outlier: 3.555A pdb=" N GLU A4035 " --> pdb=" O ASP A4031 " (cutoff:3.500A) removed outlier: 5.036A pdb=" N ASP A4037 " --> pdb=" O PHE A4033 " (cutoff:3.500A) Proline residue: A4038 - end of helix Processing helix chain 'A' and resid 4045 through 4057 removed outlier: 3.721A pdb=" N PHE A4049 " --> pdb=" O SER A4045 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ALA A4052 " --> pdb=" O ASP A4048 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N GLU A4054 " --> pdb=" O HIS A4050 " (cutoff:3.500A) Processing helix chain 'A' and resid 4060 through 4071 removed outlier: 3.759A pdb=" N GLU A4065 " --> pdb=" O GLN A4061 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N PHE A4066 " --> pdb=" O SER A4062 " (cutoff:3.500A) removed outlier: 5.896A pdb=" N CYS A4070 " --> pdb=" O PHE A4066 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N ALA A4071 " --> pdb=" O LEU A4067 " (cutoff:3.500A) Processing helix chain 'A' and resid 4081 through 4110 removed outlier: 4.647A pdb=" N VAL A4085 " --> pdb=" O TYR A4081 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LYS A4086 " --> pdb=" O GLU A4082 " (cutoff:3.500A) removed outlier: 4.443A pdb=" N GLU A4090 " --> pdb=" O LYS A4086 " (cutoff:3.500A) Proline residue: A4091 - end of helix removed outlier: 4.120A pdb=" N ASP A4094 " --> pdb=" O GLU A4090 " (cutoff:3.500A) removed outlier: 4.432A pdb=" N ILE A4095 " --> pdb=" O PRO A4091 " (cutoff:3.500A) removed outlier: 4.405A pdb=" N ASN A4098 " --> pdb=" O ASP A4094 " (cutoff:3.500A) removed outlier: 4.176A pdb=" N VAL A4099 " --> pdb=" O ILE A4095 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N SER A4107 " --> pdb=" O LEU A4103 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N HIS A4109 " --> pdb=" O ASN A4105 " (cutoff:3.500A) Processing helix chain 'A' and resid 4113 through 4124 removed outlier: 3.635A pdb=" N GLN A4117 " --> pdb=" O ASP A4113 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N THR A4118 " --> pdb=" O THR A4114 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N PHE A4119 " --> pdb=" O ARG A4115 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N LEU A4122 " --> pdb=" O THR A4118 " (cutoff:3.500A) removed outlier: 4.530A pdb=" N ALA A4123 " --> pdb=" O PHE A4119 " (cutoff:3.500A) removed outlier: 4.296A pdb=" N GLU A4124 " --> pdb=" O LEU A4120 " (cutoff:3.500A) Processing helix chain 'A' and resid 4125 through 4135 removed outlier: 3.626A pdb=" N TYR A4129 " --> pdb=" O SER A4125 " (cutoff:3.500A) Proline residue: A4132 - end of helix removed outlier: 6.098A pdb=" N GLY A4135 " --> pdb=" O GLN A4131 " (cutoff:3.500A) Processing helix chain 'A' and resid 4154 through 4163 removed outlier: 3.503A pdb=" N THR A4159 " --> pdb=" O GLU A4155 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N GLN A4160 " --> pdb=" O SER A4156 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N TRP A4161 " --> pdb=" O SER A4157 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N GLU A4162 " --> pdb=" O ARG A4158 " (cutoff:3.500A) removed outlier: 5.396A pdb=" N LYS A4163 " --> pdb=" O THR A4159 " (cutoff:3.500A) Processing helix chain 'A' and resid 4164 through 4180 removed outlier: 3.520A pdb=" N PHE A4175 " --> pdb=" O ARG A4171 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N VAL A4178 " --> pdb=" O ILE A4174 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N ASN A4179 " --> pdb=" O PHE A4175 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N GLU A4180 " --> pdb=" O ASP A4176 " (cutoff:3.500A) Processing helix chain 'A' and resid 4185 through 4207 removed outlier: 4.150A pdb=" N ASP A4196 " --> pdb=" O ASN A4192 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N PHE A4199 " --> pdb=" O GLU A4195 " (cutoff:3.500A) removed outlier: 3.873A pdb=" N ALA A4205 " --> pdb=" O MET A4201 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N GLN A4206 " --> pdb=" O GLN A4202 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ILE A4207 " --> pdb=" O LEU A4203 " (cutoff:3.500A) Processing helix chain 'A' and resid 4487 through 4500 removed outlier: 4.216A pdb=" N LYS A4491 " --> pdb=" O ALA A4487 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N TYR A4495 " --> pdb=" O LYS A4491 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ARG A4498 " --> pdb=" O ASN A4494 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N PHE A4500 " --> pdb=" O PHE A4496 " (cutoff:3.500A) Processing helix chain 'A' and resid 4501 through 4521 removed outlier: 3.658A pdb=" N MET A4505 " --> pdb=" O TYR A4501 " (cutoff:3.500A) removed outlier: 4.580A pdb=" N LEU A4506 " --> pdb=" O ASN A4502 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N LEU A4508 " --> pdb=" O ARG A4504 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N ALA A4511 " --> pdb=" O ALA A4507 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N ALA A4513 " --> pdb=" O PHE A4509 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N ILE A4517 " --> pdb=" O ALA A4513 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N LEU A4519 " --> pdb=" O ASN A4515 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N PHE A4520 " --> pdb=" O PHE A4516 " (cutoff:3.500A) removed outlier: 4.941A pdb=" N TYR A4521 " --> pdb=" O ILE A4517 " (cutoff:3.500A) Processing helix chain 'A' and resid 4569 through 4613 removed outlier: 3.615A pdb=" N ILE A4578 " --> pdb=" O ARG A4574 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N VAL A4582 " --> pdb=" O ILE A4578 " (cutoff:3.500A) removed outlier: 4.127A pdb=" N ILE A4588 " --> pdb=" O SER A4584 " (cutoff:3.500A) removed outlier: 4.047A pdb=" N GLY A4590 " --> pdb=" O PHE A4586 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N TYR A4591 " --> pdb=" O CYS A4587 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N CYS A4593 " --> pdb=" O ILE A4589 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LEU A4594 " --> pdb=" O GLY A4590 " (cutoff:3.500A) removed outlier: 4.487A pdb=" N VAL A4596 " --> pdb=" O TYR A4592 " (cutoff:3.500A) Proline residue: A4597 - end of helix removed outlier: 3.700A pdb=" N GLU A4606 " --> pdb=" O LYS A4602 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N LYS A4610 " --> pdb=" O GLU A4606 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N GLU A4612 " --> pdb=" O ALA A4608 " (cutoff:3.500A) removed outlier: 4.323A pdb=" N PHE A4613 " --> pdb=" O ARG A4609 " (cutoff:3.500A) Processing helix chain 'A' and resid 4626 through 4639 removed outlier: 3.638A pdb=" N ASP A4632 " --> pdb=" O LYS A4628 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N ARG A4633 " --> pdb=" O GLY A4629 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N LEU A4634 " --> pdb=" O GLN A4630 " (cutoff:3.500A) removed outlier: 4.914A pdb=" N VAL A4635 " --> pdb=" O TRP A4631 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N ILE A4636 " --> pdb=" O ASP A4632 " (cutoff:3.500A) removed outlier: 4.914A pdb=" N ASN A4637 " --> pdb=" O ARG A4633 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N THR A4638 " --> pdb=" O LEU A4634 " (cutoff:3.500A) removed outlier: 5.583A pdb=" N GLN A4639 " --> pdb=" O VAL A4635 " (cutoff:3.500A) Processing helix chain 'A' and resid 4649 through 4658 removed outlier: 3.788A pdb=" N VAL A4654 " --> pdb=" O VAL A4650 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N MET A4655 " --> pdb=" O LYS A4651 " (cutoff:3.500A) Processing helix chain 'A' and resid 4663 through 4672 removed outlier: 3.514A pdb=" N ILE A4667 " --> pdb=" O GLY A4663 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N SER A4668 " --> pdb=" O ARG A4664 " (cutoff:3.500A) Processing helix chain 'A' and resid 4703 through 4718 removed outlier: 3.778A pdb=" N GLN A4707 " --> pdb=" O ASP A4703 " (cutoff:3.500A) removed outlier: 4.330A pdb=" N THR A4716 " --> pdb=" O GLY A4712 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ASP A4717 " --> pdb=" O VAL A4713 " (cutoff:3.500A) removed outlier: 5.308A pdb=" N ASN A4718 " --> pdb=" O VAL A4714 " (cutoff:3.500A) Processing helix chain 'A' and resid 4719 through 4736 removed outlier: 3.768A pdb=" N LEU A4723 " --> pdb=" O SER A4719 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N MET A4727 " --> pdb=" O LEU A4723 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N SER A4730 " --> pdb=" O TYR A4726 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N LEU A4732 " --> pdb=" O THR A4728 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N HIS A4734 " --> pdb=" O SER A4730 " (cutoff:3.500A) removed outlier: 4.258A pdb=" N TYR A4735 " --> pdb=" O VAL A4731 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N ASN A4736 " --> pdb=" O LEU A4732 " (cutoff:3.500A) Processing helix chain 'A' and resid 4737 through 4751 removed outlier: 4.861A pdb=" N ALA A4741 " --> pdb=" O ASN A4737 " (cutoff:3.500A) removed outlier: 4.350A pdb=" N ALA A4742 " --> pdb=" O PHE A4738 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N HIS A4743 " --> pdb=" O PHE A4739 " (cutoff:3.500A) removed outlier: 4.689A pdb=" N LEU A4744 " --> pdb=" O PHE A4740 " (cutoff:3.500A) removed outlier: 5.488A pdb=" N LEU A4745 " --> pdb=" O ALA A4741 " (cutoff:3.500A) removed outlier: 5.355A pdb=" N ASP A4746 " --> pdb=" O ALA A4742 " (cutoff:3.500A) removed outlier: 5.161A pdb=" N ILE A4747 " --> pdb=" O HIS A4743 " (cutoff:3.500A) removed outlier: 4.631A pdb=" N ALA A4748 " --> pdb=" O LEU A4744 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N MET A4749 " --> pdb=" O LEU A4745 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N PHE A4751 " --> pdb=" O ILE A4747 " (cutoff:3.500A) Processing helix chain 'A' and resid 4752 through 4763 removed outlier: 4.450A pdb=" N ILE A4757 " --> pdb=" O THR A4753 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N VAL A4761 " --> pdb=" O ILE A4757 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N THR A4762 " --> pdb=" O LEU A4758 " (cutoff:3.500A) Processing helix chain 'A' and resid 4764 through 4790 removed outlier: 3.711A pdb=" N LEU A4768 " --> pdb=" O ASN A4764 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LEU A4770 " --> pdb=" O LYS A4766 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N VAL A4777 " --> pdb=" O GLY A4773 " (cutoff:3.500A) removed outlier: 3.699A pdb=" N TYR A4780 " --> pdb=" O ALA A4776 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N VAL A4785 " --> pdb=" O LEU A4781 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N ALA A4786 " --> pdb=" O TYR A4782 " (cutoff:3.500A) Processing helix chain 'A' and resid 4809 through 4824 removed outlier: 4.597A pdb=" N VAL A4822 " --> pdb=" O MET A4818 " (cutoff:3.500A) removed outlier: 4.668A pdb=" N ARG A4823 " --> pdb=" O TYR A4819 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N ALA A4824 " --> pdb=" O VAL A4820 " (cutoff:3.500A) Processing helix chain 'A' and resid 4828 through 4833 removed outlier: 3.891A pdb=" N ILE A4832 " --> pdb=" O ILE A4828 " (cutoff:3.500A) removed outlier: 6.311A pdb=" N GLU A4833 " --> pdb=" O GLY A4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4828 through 4833' Processing helix chain 'A' and resid 4840 through 4855 removed outlier: 4.152A pdb=" N PHE A4847 " --> pdb=" O TYR A4843 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N PHE A4851 " --> pdb=" O PHE A4847 " (cutoff:3.500A) Processing helix chain 'A' and resid 4859 through 4884 removed outlier: 3.656A pdb=" N ILE A4863 " --> pdb=" O LEU A4859 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N GLN A4864 " --> pdb=" O LEU A4860 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N LEU A4866 " --> pdb=" O ILE A4862 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ILE A4867 " --> pdb=" O ILE A4863 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N ALA A4870 " --> pdb=" O LEU A4866 " (cutoff:3.500A) removed outlier: 4.396A pdb=" N ASP A4876 " --> pdb=" O GLY A4872 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N GLN A4878 " --> pdb=" O LEU A4874 " (cutoff:3.500A) removed outlier: 3.960A pdb=" N GLU A4879 " --> pdb=" O ARG A4875 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N LYS A4882 " --> pdb=" O GLN A4878 " (cutoff:3.500A) Processing helix chain 'A' and resid 4895 through 4900 removed outlier: 3.817A pdb=" N PHE A4899 " --> pdb=" O GLY A4895 " (cutoff:3.500A) Processing helix chain 'A' and resid 4904 through 4912 removed outlier: 4.201A pdb=" N THR A4908 " --> pdb=" O HIS A4904 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N HIS A4909 " --> pdb=" O GLY A4905 " (cutoff:3.500A) Processing helix chain 'A' and resid 4915 through 4930 removed outlier: 4.195A pdb=" N TYR A4919 " --> pdb=" O ASN A4915 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N LEU A4920 " --> pdb=" O LEU A4916 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N LEU A4923 " --> pdb=" O TYR A4919 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N ILE A4927 " --> pdb=" O LEU A4923 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N ASN A4928 " --> pdb=" O MET A4924 " (cutoff:3.500A) removed outlier: 5.524A pdb=" N ASP A4930 " --> pdb=" O LEU A4926 " (cutoff:3.500A) Processing helix chain 'A' and resid 4935 through 4948 removed outlier: 3.579A pdb=" N SER A4939 " --> pdb=" O THR A4935 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N TYR A4940 " --> pdb=" O GLY A4936 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N TRP A4942 " --> pdb=" O GLU A4938 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N LYS A4943 " --> pdb=" O SER A4939 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLN A4946 " --> pdb=" O TRP A4942 " (cutoff:3.500A) Processing helix chain 'A' and resid 4958 through 4963 removed outlier: 6.137A pdb=" N GLN A4962 " --> pdb=" O CYS A4958 " (cutoff:3.500A) Processing helix chain 'A' and resid 398 through 403 removed outlier: 4.012A pdb=" N ASP A 401 " --> pdb=" O HIS A 398 " (cutoff:3.500A) removed outlier: 5.057A pdb=" N GLY A 402 " --> pdb=" O MET A 399 " (cutoff:3.500A) removed outlier: 4.610A pdb=" N LEU A 403 " --> pdb=" O ASP A 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 398 through 403' Processing helix chain 'A' and resid 915 through 920 removed outlier: 3.893A pdb=" N LEU A 918 " --> pdb=" O HIS A 915 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N VAL A 919 " --> pdb=" O PRO A 916 " (cutoff:3.500A) removed outlier: 5.620A pdb=" N GLU A 920 " --> pdb=" O CYS A 917 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 915 through 920' Processing helix chain 'C' and resid 61 through 66 removed outlier: 4.734A pdb=" N CYS C 65 " --> pdb=" O ASP C 61 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N THR C 66 " --> pdb=" O LEU C 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 61 through 66' Processing helix chain 'C' and resid 74 through 84 removed outlier: 3.526A pdb=" N ALA C 83 " --> pdb=" O GLN C 79 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ASN C 84 " --> pdb=" O GLU C 80 " (cutoff:3.500A) Processing helix chain 'C' and resid 265 through 271 removed outlier: 4.727A pdb=" N VAL C 269 " --> pdb=" O GLY C 265 " (cutoff:3.500A) removed outlier: 5.680A pdb=" N ALA C 271 " --> pdb=" O VAL C 267 " (cutoff:3.500A) Processing helix chain 'C' and resid 323 through 328 removed outlier: 3.878A pdb=" N ALA C 328 " --> pdb=" O VAL C 324 " (cutoff:3.500A) Processing helix chain 'C' and resid 409 through 438 removed outlier: 3.618A pdb=" N ARG C 420 " --> pdb=" O ALA C 416 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N LEU C 425 " --> pdb=" O SER C 421 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N ARG C 428 " --> pdb=" O PHE C 424 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N LEU C 436 " --> pdb=" O GLY C 432 " (cutoff:3.500A) removed outlier: 4.135A pdb=" N LYS C 438 " --> pdb=" O ASP C 434 " (cutoff:3.500A) Processing helix chain 'C' and resid 448 through 464 removed outlier: 4.796A pdb=" N VAL C 452 " --> pdb=" O PRO C 448 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N LEU C 454 " --> pdb=" O GLU C 450 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N SER C 455 " --> pdb=" O SER C 451 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N GLN C 457 " --> pdb=" O SER C 453 " (cutoff:3.500A) Processing helix chain 'C' and resid 471 through 493 removed outlier: 4.269A pdb=" N GLN C 476 " --> pdb=" O HIS C 472 " (cutoff:3.500A) removed outlier: 4.345A pdb=" N ASN C 477 " --> pdb=" O GLU C 473 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N GLU C 492 " --> pdb=" O LEU C 488 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N GLY C 493 " --> pdb=" O PHE C 489 " (cutoff:3.500A) Processing helix chain 'C' and resid 494 through 507 removed outlier: 4.090A pdb=" N CYS C 501 " --> pdb=" O LEU C 497 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N HIS C 506 " --> pdb=" O ILE C 502 " (cutoff:3.500A) removed outlier: 5.380A pdb=" N VAL C 507 " --> pdb=" O ASP C 503 " (cutoff:3.500A) Processing helix chain 'C' and resid 519 through 542 removed outlier: 3.501A pdb=" N GLY C 523 " --> pdb=" O GLY C 519 " (cutoff:3.500A) removed outlier: 4.961A pdb=" N GLU C 524 " --> pdb=" O ARG C 520 " (cutoff:3.500A) removed outlier: 5.522A pdb=" N SER C 525 " --> pdb=" O GLU C 521 " (cutoff:3.500A) removed outlier: 6.168A pdb=" N TRP C 526 " --> pdb=" O ALA C 522 " (cutoff:3.500A) removed outlier: 6.279A pdb=" N LYS C 527 " --> pdb=" O GLY C 523 " (cutoff:3.500A) removed outlier: 5.780A pdb=" N SER C 528 " --> pdb=" O GLU C 524 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N SER C 532 " --> pdb=" O SER C 528 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N GLU C 535 " --> pdb=" O ASN C 531 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N LEU C 536 " --> pdb=" O SER C 532 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N ILE C 541 " --> pdb=" O LEU C 537 " (cutoff:3.500A) removed outlier: 3.783A pdb=" N ARG C 542 " --> pdb=" O ALA C 538 " (cutoff:3.500A) Processing helix chain 'C' and resid 544 through 553 removed outlier: 3.630A pdb=" N GLN C 550 " --> pdb=" O LYS C 546 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N SER C 552 " --> pdb=" O CYS C 548 " (cutoff:3.500A) removed outlier: 5.226A pdb=" N GLY C 553 " --> pdb=" O ALA C 549 " (cutoff:3.500A) Processing helix chain 'C' and resid 554 through 563 removed outlier: 4.391A pdb=" N GLU C 563 " --> pdb=" O ILE C 559 " (cutoff:3.500A) Processing helix chain 'C' and resid 564 through 582 removed outlier: 6.399A pdb=" N SER C 568 " --> pdb=" O ARG C 564 " (cutoff:3.500A) removed outlier: 7.167A pdb=" N SER C 569 " --> pdb=" O LEU C 565 " (cutoff:3.500A) removed outlier: 6.948A pdb=" N GLY C 570 " --> pdb=" O GLU C 566 " (cutoff:3.500A) removed outlier: 3.911A pdb=" N VAL C 580 " --> pdb=" O HIS C 576 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N GLU C 581 " --> pdb=" O CYS C 577 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N SER C 582 " --> pdb=" O VAL C 578 " (cutoff:3.500A) Processing helix chain 'C' and resid 583 through 589 removed outlier: 3.834A pdb=" N ASN C 587 " --> pdb=" O PRO C 583 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ILE C 588 " --> pdb=" O GLU C 584 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N ILE C 589 " --> pdb=" O ALA C 585 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 583 through 589' Processing helix chain 'C' and resid 590 through 605 removed outlier: 3.545A pdb=" N LEU C 601 " --> pdb=" O ILE C 597 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N GLY C 605 " --> pdb=" O LEU C 601 " (cutoff:3.500A) Processing helix chain 'C' and resid 607 through 620 removed outlier: 3.871A pdb=" N LEU C 611 " --> pdb=" O ASN C 607 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N SER C 616 " --> pdb=" O ASP C 612 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N CYS C 618 " --> pdb=" O LEU C 614 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N VAL C 619 " --> pdb=" O CYS C 615 " (cutoff:3.500A) removed outlier: 4.502A pdb=" N CYS C 620 " --> pdb=" O SER C 616 " (cutoff:3.500A) Processing helix chain 'C' and resid 625 through 640 removed outlier: 3.864A pdb=" N HIS C 630 " --> pdb=" O ARG C 626 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N LEU C 631 " --> pdb=" O SER C 627 " (cutoff:3.500A) removed outlier: 4.061A pdb=" N LEU C 637 " --> pdb=" O CYS C 633 " (cutoff:3.500A) Proline residue: C 638 - end of helix Processing helix chain 'C' and resid 821 through 828 removed outlier: 4.105A pdb=" N ALA C 825 " --> pdb=" O PRO C 821 " (cutoff:3.500A) removed outlier: 4.198A pdb=" N VAL C 826 " --> pdb=" O CYS C 822 " (cutoff:3.500A) removed outlier: 4.903A pdb=" N LEU C 827 " --> pdb=" O TYR C 823 " (cutoff:3.500A) Proline residue: C 828 - end of helix No H-bonds generated for 'chain 'C' and resid 821 through 828' Processing helix chain 'C' and resid 876 through 901 removed outlier: 4.306A pdb=" N LEU C 892 " --> pdb=" O ASN C 888 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N LYS C 897 " --> pdb=" O TRP C 893 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N GLU C 899 " --> pdb=" O MET C 895 " (cutoff:3.500A) removed outlier: 4.826A pdb=" N LEU C 900 " --> pdb=" O ASN C 896 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N GLY C 901 " --> pdb=" O LYS C 897 " (cutoff:3.500A) Processing helix chain 'C' and resid 929 through 946 removed outlier: 4.000A pdb=" N MET C 935 " --> pdb=" O TYR C 931 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N GLU C 938 " --> pdb=" O GLN C 934 " (cutoff:3.500A) removed outlier: 4.034A pdb=" N LEU C 944 " --> pdb=" O LEU C 940 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ALA C 945 " --> pdb=" O LYS C 941 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N LEU C 946 " --> pdb=" O THR C 942 " (cutoff:3.500A) Processing helix chain 'C' and resid 989 through 1012 removed outlier: 3.880A pdb=" N GLU C 993 " --> pdb=" O THR C 989 " (cutoff:3.500A) removed outlier: 3.897A pdb=" N ASP C 997 " --> pdb=" O GLU C 993 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N LYS C 998 " --> pdb=" O ALA C 994 " (cutoff:3.500A) Processing helix chain 'C' and resid 1042 through 1061 removed outlier: 4.660A pdb=" N ASN C1046 " --> pdb=" O THR C1042 " (cutoff:3.500A) Processing helix chain 'C' and resid 1226 through 1231 removed outlier: 3.952A pdb=" N GLY C1231 " --> pdb=" O PHE C1227 " (cutoff:3.500A) Processing helix chain 'C' and resid 1571 through 1577 removed outlier: 4.499A pdb=" N HIS C1575 " --> pdb=" O PHE C1571 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N LYS C1576 " --> pdb=" O LYS C1572 " (cutoff:3.500A) removed outlier: 5.798A pdb=" N ASN C1577 " --> pdb=" O SER C1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1571 through 1577' Processing helix chain 'C' and resid 1640 through 1648 removed outlier: 4.444A pdb=" N LEU C1644 " --> pdb=" O ASP C1640 " (cutoff:3.500A) removed outlier: 4.933A pdb=" N THR C1645 " --> pdb=" O ILE C1641 " (cutoff:3.500A) removed outlier: 5.254A pdb=" N GLU C1646 " --> pdb=" O LEU C1642 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N GLN C1647 " --> pdb=" O GLU C1643 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N GLU C1648 " --> pdb=" O LEU C1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1640 through 1648' Processing helix chain 'C' and resid 1649 through 1666 removed outlier: 3.841A pdb=" N HIS C1654 " --> pdb=" O LEU C1650 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SER C1662 " --> pdb=" O LEU C1658 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N CYS C1665 " --> pdb=" O TYR C1661 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ALA C1666 " --> pdb=" O SER C1662 " (cutoff:3.500A) Processing helix chain 'C' and resid 1669 through 1680 removed outlier: 4.607A pdb=" N HIS C1674 " --> pdb=" O HIS C1670 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N SER C1678 " --> pdb=" O HIS C1674 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N HIS C1679 " --> pdb=" O ALA C1675 " (cutoff:3.500A) Processing helix chain 'C' and resid 1681 through 1691 removed outlier: 4.315A pdb=" N LEU C1685 " --> pdb=" O ASP C1681 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N GLU C1690 " --> pdb=" O LEU C1686 " (cutoff:3.500A) Processing helix chain 'C' and resid 1695 through 1710 removed outlier: 3.758A pdb=" N ALA C1700 " --> pdb=" O GLY C1696 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N TYR C1702 " --> pdb=" O LEU C1698 " (cutoff:3.500A) Processing helix chain 'C' and resid 1711 through 1723 removed outlier: 4.374A pdb=" N THR C1716 " --> pdb=" O SER C1712 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA C1717 " --> pdb=" O SER C1713 " (cutoff:3.500A) removed outlier: 4.254A pdb=" N MET C1721 " --> pdb=" O ALA C1717 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N ASN C1722 " --> pdb=" O ARG C1718 " (cutoff:3.500A) removed outlier: 6.251A pdb=" N ASN C1723 " --> pdb=" O LEU C1719 " (cutoff:3.500A) Processing helix chain 'C' and resid 1730 through 1736 removed outlier: 4.344A pdb=" N ILE C1736 " --> pdb=" O GLU C1732 " (cutoff:3.500A) Processing helix chain 'C' and resid 1771 through 1776 Processing helix chain 'C' and resid 1783 through 1803 removed outlier: 3.709A pdb=" N LEU C1787 " --> pdb=" O PRO C1783 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N ALA C1789 " --> pdb=" O ASP C1785 " (cutoff:3.500A) removed outlier: 4.117A pdb=" N ILE C1792 " --> pdb=" O LYS C1788 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N GLU C1801 " --> pdb=" O GLU C1797 " (cutoff:3.500A) Processing helix chain 'C' and resid 1813 through 1832 removed outlier: 3.615A pdb=" N LEU C1817 " --> pdb=" O THR C1813 " (cutoff:3.500A) Proline residue: C1820 - end of helix removed outlier: 4.351A pdb=" N LEU C1824 " --> pdb=" O PRO C1820 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N MET C1831 " --> pdb=" O THR C1827 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N GLY C1832 " --> pdb=" O LEU C1828 " (cutoff:3.500A) Processing helix chain 'C' and resid 1836 through 1847 removed outlier: 4.197A pdb=" N HIS C1841 " --> pdb=" O GLU C1837 " (cutoff:3.500A) removed outlier: 4.139A pdb=" N GLN C1844 " --> pdb=" O LYS C1840 " (cutoff:3.500A) removed outlier: 4.257A pdb=" N LEU C1845 " --> pdb=" O HIS C1841 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N ILE C1846 " --> pdb=" O ILE C1842 " (cutoff:3.500A) Processing helix chain 'C' and resid 1901 through 1952 removed outlier: 4.222A pdb=" N GLN C1906 " --> pdb=" O PRO C1902 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU C1909 " --> pdb=" O LEU C1905 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N TYR C1913 " --> pdb=" O LEU C1909 " (cutoff:3.500A) removed outlier: 3.684A pdb=" N LEU C1914 " --> pdb=" O LEU C1910 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N GLN C1918 " --> pdb=" O LEU C1914 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N VAL C1919 " --> pdb=" O CYS C1915 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ARG C1920 " --> pdb=" O ASP C1916 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N GLU C1924 " --> pdb=" O ARG C1920 " (cutoff:3.500A) removed outlier: 4.809A pdb=" N ASP C1932 " --> pdb=" O ALA C1928 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N VAL C1934 " --> pdb=" O SER C1930 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N LEU C1937 " --> pdb=" O PHE C1933 " (cutoff:3.500A) removed outlier: 4.608A pdb=" N ASP C1939 " --> pdb=" O ALA C1935 " (cutoff:3.500A) removed outlier: 5.217A pdb=" N ASN C1940 " --> pdb=" O LYS C1936 " (cutoff:3.500A) removed outlier: 3.745A pdb=" N GLN C1941 " --> pdb=" O LEU C1937 " (cutoff:3.500A) removed outlier: 4.347A pdb=" N ARG C1942 " --> pdb=" O GLN C1938 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N GLN C1950 " --> pdb=" O ASN C1946 " (cutoff:3.500A) Processing helix chain 'C' and resid 1991 through 1998 removed outlier: 3.525A pdb=" N GLN C1996 " --> pdb=" O GLU C1992 " (cutoff:3.500A) removed outlier: 4.703A pdb=" N LEU C1998 " --> pdb=" O ARG C1994 " (cutoff:3.500A) Processing helix chain 'C' and resid 1999 through 2013 removed outlier: 3.842A pdb=" N ILE C2010 " --> pdb=" O THR C2006 " (cutoff:3.500A) removed outlier: 4.581A pdb=" N GLU C2011 " --> pdb=" O HIS C2007 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N LEU C2012 " --> pdb=" O CYS C2008 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N ASP C2013 " --> pdb=" O GLY C2009 " (cutoff:3.500A) Processing helix chain 'C' and resid 2024 through 2038 removed outlier: 5.236A pdb=" N GLY C2028 " --> pdb=" O LEU C2024 " (cutoff:3.500A) removed outlier: 4.597A pdb=" N ARG C2029 " --> pdb=" O THR C2025 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N LEU C2030 " --> pdb=" O ILE C2026 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LEU C2031 " --> pdb=" O ARG C2027 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N GLU C2035 " --> pdb=" O LEU C2031 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N THR C2038 " --> pdb=" O VAL C2034 " (cutoff:3.500A) Processing helix chain 'C' and resid 2058 through 2074 removed outlier: 3.858A pdb=" N LEU C2062 " --> pdb=" O THR C2058 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N SER C2064 " --> pdb=" O GLN C2060 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N VAL C2068 " --> pdb=" O SER C2064 " (cutoff:3.500A) removed outlier: 3.820A pdb=" N GLU C2073 " --> pdb=" O ARG C2069 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N SER C2074 " --> pdb=" O TRP C2070 " (cutoff:3.500A) Processing helix chain 'C' and resid 2078 through 2095 removed outlier: 4.018A pdb=" N VAL C2082 " --> pdb=" O ASP C2078 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N LEU C2088 " --> pdb=" O ALA C2084 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N GLN C2092 " --> pdb=" O LEU C2088 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N TYR C2093 " --> pdb=" O LEU C2089 " (cutoff:3.500A) removed outlier: 4.173A pdb=" N GLY C2095 " --> pdb=" O ARG C2091 " (cutoff:3.500A) Processing helix chain 'C' and resid 2096 through 2107 Proline residue: C2104 - end of helix removed outlier: 5.989A pdb=" N TYR C2107 " --> pdb=" O LEU C2103 " (cutoff:3.500A) Processing helix chain 'C' and resid 2110 through 2132 removed outlier: 3.805A pdb=" N VAL C2114 " --> pdb=" O ASN C2110 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N GLU C2115 " --> pdb=" O GLY C2111 " (cutoff:3.500A) removed outlier: 5.821A pdb=" N ASP C2116 " --> pdb=" O VAL C2112 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N THR C2117 " --> pdb=" O SER C2113 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N ILE C2118 " --> pdb=" O VAL C2114 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N ASN C2119 " --> pdb=" O GLU C2115 " (cutoff:3.500A) removed outlier: 3.942A pdb=" N GLN C2126 " --> pdb=" O ALA C2122 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N ILE C2127 " --> pdb=" O SER C2123 " (cutoff:3.500A) removed outlier: 4.833A pdb=" N SER C2132 " --> pdb=" O ARG C2128 " (cutoff:3.500A) Processing helix chain 'C' and resid 2140 through 2153 removed outlier: 3.878A pdb=" N ASN C2153 " --> pdb=" O ASP C2149 " (cutoff:3.500A) Processing helix chain 'C' and resid 2154 through 2160 removed outlier: 4.208A pdb=" N GLN C2158 " --> pdb=" O LYS C2154 " (cutoff:3.500A) removed outlier: 5.843A pdb=" N HIS C2159 " --> pdb=" O VAL C2155 " (cutoff:3.500A) Proline residue: C2160 - end of helix No H-bonds generated for 'chain 'C' and resid 2154 through 2160' Processing helix chain 'C' and resid 2161 through 2167 removed outlier: 4.071A pdb=" N GLY C2167 " --> pdb=" O MET C2163 " (cutoff:3.500A) Processing helix chain 'C' and resid 2168 through 2181 removed outlier: 3.974A pdb=" N VAL C2172 " --> pdb=" O MET C2168 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N GLY C2181 " --> pdb=" O VAL C2177 " (cutoff:3.500A) Processing helix chain 'C' and resid 2191 through 2209 removed outlier: 4.040A pdb=" N ALA C2195 " --> pdb=" O PRO C2191 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N ASN C2196 " --> pdb=" O LYS C2192 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N ARG C2199 " --> pdb=" O ALA C2195 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N PHE C2200 " --> pdb=" O ASN C2196 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N LEU C2201 " --> pdb=" O CYS C2197 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N ARG C2206 " --> pdb=" O CYS C2202 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N ILE C2207 " --> pdb=" O TYR C2203 " (cutoff:3.500A) removed outlier: 4.923A pdb=" N SER C2208 " --> pdb=" O PHE C2204 " (cutoff:3.500A) removed outlier: 5.266A pdb=" N ARG C2209 " --> pdb=" O CYS C2205 " (cutoff:3.500A) Processing helix chain 'C' and resid 2210 through 2217 removed outlier: 4.251A pdb=" N ASP C2217 " --> pdb=" O LYS C2213 " (cutoff:3.500A) Processing helix chain 'C' and resid 2218 through 2225 removed outlier: 4.620A pdb=" N GLU C2224 " --> pdb=" O SER C2220 " (cutoff:3.500A) removed outlier: 4.442A pdb=" N ASN C2225 " --> pdb=" O TYR C2221 " (cutoff:3.500A) Processing helix chain 'C' and resid 2239 through 2249 removed outlier: 4.146A pdb=" N VAL C2243 " --> pdb=" O THR C2239 " (cutoff:3.500A) removed outlier: 4.473A pdb=" N ALA C2244 " --> pdb=" O PRO C2240 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N VAL C2248 " --> pdb=" O ALA C2244 " (cutoff:3.500A) Processing helix chain 'C' and resid 2251 through 2258 removed outlier: 3.769A pdb=" N LEU C2258 " --> pdb=" O LEU C2254 " (cutoff:3.500A) Processing helix chain 'C' and resid 2259 through 2274 removed outlier: 3.676A pdb=" N LEU C2263 " --> pdb=" O ARG C2259 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N LYS C2265 " --> pdb=" O PRO C2261 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N VAL C2266 " --> pdb=" O ASP C2262 " (cutoff:3.500A) removed outlier: 4.427A pdb=" N GLY C2274 " --> pdb=" O LEU C2270 " (cutoff:3.500A) Processing helix chain 'C' and resid 2295 through 2308 removed outlier: 3.583A pdb=" N TYR C2299 " --> pdb=" O GLU C2295 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N ASP C2301 " --> pdb=" O GLU C2297 " (cutoff:3.500A) removed outlier: 4.463A pdb=" N PHE C2305 " --> pdb=" O ASP C2301 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N ALA C2306 " --> pdb=" O PHE C2302 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N VAL C2307 " --> pdb=" O LEU C2303 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N PHE C2308 " --> pdb=" O ARG C2304 " (cutoff:3.500A) Processing helix chain 'C' and resid 2314 through 2329 removed outlier: 4.086A pdb=" N ARG C2328 " --> pdb=" O LEU C2324 " (cutoff:3.500A) Proline residue: C2329 - end of helix Processing helix chain 'C' and resid 2343 through 2354 removed outlier: 4.537A pdb=" N MET C2348 " --> pdb=" O LEU C2344 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N GLU C2349 " --> pdb=" O LEU C2345 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N ILE C2352 " --> pdb=" O MET C2348 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N LYS C2353 " --> pdb=" O GLU C2349 " (cutoff:3.500A) removed outlier: 4.234A pdb=" N ILE C2354 " --> pdb=" O GLU C2350 " (cutoff:3.500A) Processing helix chain 'C' and resid 2387 through 2404 removed outlier: 3.690A pdb=" N THR C2391 " --> pdb=" O ASN C2387 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N ALA C2394 " --> pdb=" O MET C2390 " (cutoff:3.500A) removed outlier: 4.718A pdb=" N ALA C2404 " --> pdb=" O LEU C2400 " (cutoff:3.500A) Processing helix chain 'C' and resid 2408 through 2413 removed outlier: 3.535A pdb=" N ALA C2412 " --> pdb=" O HIS C2408 " (cutoff:3.500A) Processing helix chain 'C' and resid 2414 through 2428 removed outlier: 5.303A pdb=" N ILE C2418 " --> pdb=" O LYS C2414 " (cutoff:3.500A) removed outlier: 6.583A pdb=" N ARG C2419 " --> pdb=" O GLY C2415 " (cutoff:3.500A) removed outlier: 4.716A pdb=" N ILE C2420 " --> pdb=" O GLU C2416 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N ARG C2421 " --> pdb=" O ALA C2417 " (cutoff:3.500A) Processing helix chain 'C' and resid 2432 through 2437 Processing helix chain 'C' and resid 2462 through 2477 removed outlier: 4.354A pdb=" N LYS C2466 " --> pdb=" O CYS C2462 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N LEU C2471 " --> pdb=" O ALA C2467 " (cutoff:3.500A) Processing helix chain 'C' and resid 2481 through 2489 removed outlier: 3.885A pdb=" N LEU C2485 " --> pdb=" O VAL C2481 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N LEU C2486 " --> pdb=" O GLN C2482 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N LEU C2488 " --> pdb=" O PHE C2484 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N LEU C2489 " --> pdb=" O LEU C2485 " (cutoff:3.500A) Processing helix chain 'C' and resid 2492 through 2500 removed outlier: 3.633A pdb=" N ASP C2496 " --> pdb=" O GLY C2492 " (cutoff:3.500A) removed outlier: 4.223A pdb=" N LEU C2497 " --> pdb=" O PHE C2493 " (cutoff:3.500A) removed outlier: 4.033A pdb=" N ARG C2498 " --> pdb=" O LEU C2494 " (cutoff:3.500A) Processing helix chain 'C' and resid 2511 through 2528 removed outlier: 4.549A pdb=" N ALA C2516 " --> pdb=" O ASP C2512 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N LEU C2517 " --> pdb=" O MET C2513 " (cutoff:3.500A) removed outlier: 4.627A pdb=" N ASN C2518 " --> pdb=" O ALA C2514 " (cutoff:3.500A) removed outlier: 5.352A pdb=" N CYS C2522 " --> pdb=" O ASN C2518 " (cutoff:3.500A) removed outlier: 4.446A pdb=" N THR C2523 " --> pdb=" O ARG C2519 " (cutoff:3.500A) removed outlier: 4.959A pdb=" N VAL C2525 " --> pdb=" O LEU C2521 " (cutoff:3.500A) Proline residue: C2527 - end of helix Processing helix chain 'C' and resid 2537 through 2553 removed outlier: 3.669A pdb=" N HIS C2541 " --> pdb=" O ALA C2537 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N ILE C2546 " --> pdb=" O HIS C2542 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N HIS C2551 " --> pdb=" O ASP C2547 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N THR C2552 " --> pdb=" O SER C2548 " (cutoff:3.500A) Processing helix chain 'C' and resid 2559 through 2576 removed outlier: 4.827A pdb=" N THR C2563 " --> pdb=" O GLY C2559 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N LYS C2564 " --> pdb=" O CYS C2560 " (cutoff:3.500A) removed outlier: 4.055A pdb=" N ALA C2565 " --> pdb=" O SER C2561 " (cutoff:3.500A) removed outlier: 3.797A pdb=" N VAL C2572 " --> pdb=" O ASP C2568 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N LEU C2574 " --> pdb=" O ILE C2570 " (cutoff:3.500A) removed outlier: 3.907A pdb=" N LEU C2575 " --> pdb=" O GLU C2571 " (cutoff:3.500A) removed outlier: 4.738A pdb=" N SER C2576 " --> pdb=" O VAL C2572 " (cutoff:3.500A) Processing helix chain 'C' and resid 2583 through 2601 removed outlier: 4.234A pdb=" N ARG C2591 " --> pdb=" O GLN C2587 " (cutoff:3.500A) removed outlier: 3.792A pdb=" N ARG C2592 " --> pdb=" O HIS C2588 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LEU C2593 " --> pdb=" O LEU C2589 " (cutoff:3.500A) removed outlier: 6.192A pdb=" N VAL C2594 " --> pdb=" O LEU C2590 " (cutoff:3.500A) removed outlier: 4.155A pdb=" N PHE C2595 " --> pdb=" O ARG C2591 " (cutoff:3.500A) removed outlier: 4.185A pdb=" N ASP C2596 " --> pdb=" O ARG C2592 " (cutoff:3.500A) Proline residue: C2598 - end of helix removed outlier: 4.124A pdb=" N ASN C2601 " --> pdb=" O VAL C2597 " (cutoff:3.500A) Processing helix chain 'C' and resid 2605 through 2627 removed outlier: 3.696A pdb=" N LYS C2609 " --> pdb=" O LYS C2605 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N TYR C2615 " --> pdb=" O LEU C2611 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N ARG C2617 " --> pdb=" O ASN C2613 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N CYS C2618 " --> pdb=" O HIS C2614 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N LYS C2620 " --> pdb=" O GLU C2616 " (cutoff:3.500A) removed outlier: 5.033A pdb=" N TYR C2621 " --> pdb=" O ARG C2617 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N TYR C2622 " --> pdb=" O CYS C2618 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N CYS C2623 " --> pdb=" O TRP C2619 " (cutoff:3.500A) Proline residue: C2625 - end of helix Processing helix chain 'C' and resid 2635 through 2653 removed outlier: 3.822A pdb=" N ASP C2651 " --> pdb=" O TRP C2647 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N ALA C2652 " --> pdb=" O GLY C2648 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LEU C2653 " --> pdb=" O ILE C2649 " (cutoff:3.500A) Processing helix chain 'C' and resid 2658 through 2678 removed outlier: 4.680A pdb=" N LEU C2662 " --> pdb=" O TYR C2658 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N PHE C2663 " --> pdb=" O GLU C2659 " (cutoff:3.500A) removed outlier: 4.498A pdb=" N LEU C2665 " --> pdb=" O GLU C2661 " (cutoff:3.500A) removed outlier: 4.207A pdb=" N ALA C2666 " --> pdb=" O LEU C2662 " (cutoff:3.500A) Proline residue: C2668 - end of helix removed outlier: 4.130A pdb=" N SER C2671 " --> pdb=" O LEU C2667 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N ALA C2672 " --> pdb=" O PRO C2668 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N ALA C2676 " --> pdb=" O ALA C2672 " (cutoff:3.500A) removed outlier: 4.883A pdb=" N LEU C2677 " --> pdb=" O VAL C2673 " (cutoff:3.500A) Proline residue: C2678 - end of helix Processing helix chain 'C' and resid 2715 through 2739 removed outlier: 3.608A pdb=" N GLU C2719 " --> pdb=" O PRO C2715 " (cutoff:3.500A) removed outlier: 4.793A pdb=" N TYR C2720 " --> pdb=" O GLU C2716 " (cutoff:3.500A) removed outlier: 5.133A pdb=" N PHE C2721 " --> pdb=" O LYS C2717 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N LYS C2737 " --> pdb=" O TRP C2733 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N ALA C2739 " --> pdb=" O MET C2735 " (cutoff:3.500A) Processing helix chain 'C' and resid 2765 through 2774 removed outlier: 3.888A pdb=" N LYS C2769 " --> pdb=" O SER C2765 " (cutoff:3.500A) removed outlier: 5.652A pdb=" N GLU C2770 " --> pdb=" O GLU C2766 " (cutoff:3.500A) removed outlier: 5.200A pdb=" N ILE C2771 " --> pdb=" O LYS C2767 " (cutoff:3.500A) removed outlier: 4.662A pdb=" N TYR C2772 " --> pdb=" O GLU C2768 " (cutoff:3.500A) Processing helix chain 'C' and resid 2775 through 2786 removed outlier: 4.035A pdb=" N SER C2779 " --> pdb=" O PRO C2775 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N LEU C2780 " --> pdb=" O ILE C2776 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N LYS C2781 " --> pdb=" O LYS C2777 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N THR C2782 " --> pdb=" O GLU C2778 " (cutoff:3.500A) removed outlier: 4.231A pdb=" N MET C2783 " --> pdb=" O SER C2779 " (cutoff:3.500A) removed outlier: 4.514A pdb=" N ALA C2785 " --> pdb=" O LYS C2781 " (cutoff:3.500A) removed outlier: 4.746A pdb=" N TRP C2786 " --> pdb=" O THR C2782 " (cutoff:3.500A) Processing helix chain 'C' and resid 2836 through 2865 removed outlier: 5.337A pdb=" N ALA C2840 " --> pdb=" O ARG C2836 " (cutoff:3.500A) removed outlier: 4.957A pdb=" N MET C2841 " --> pdb=" O ASP C2837 " (cutoff:3.500A) removed outlier: 3.907A pdb=" N LYS C2855 " --> pdb=" O ASN C2851 " (cutoff:3.500A) removed outlier: 4.303A pdb=" N LEU C2861 " --> pdb=" O LYS C2857 " (cutoff:3.500A) removed outlier: 5.223A pdb=" N GLU C2862 " --> pdb=" O LYS C2858 " (cutoff:3.500A) removed outlier: 5.532A pdb=" N SER C2863 " --> pdb=" O LEU C2859 " (cutoff:3.500A) removed outlier: 5.008A pdb=" N LYS C2864 " --> pdb=" O GLU C2860 " (cutoff:3.500A) removed outlier: 6.071A pdb=" N GLY C2865 " --> pdb=" O LEU C2861 " (cutoff:3.500A) Processing helix chain 'C' and resid 2879 through 2901 removed outlier: 4.542A pdb=" N LYS C2883 " --> pdb=" O THR C2879 " (cutoff:3.500A) removed outlier: 5.673A pdb=" N LYS C2885 " --> pdb=" O LYS C2881 " (cutoff:3.500A) removed outlier: 5.149A pdb=" N ASP C2886 " --> pdb=" O GLU C2882 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N GLU C2888 " --> pdb=" O ALA C2884 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N LYS C2889 " --> pdb=" O LYS C2885 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N ALA C2890 " --> pdb=" O ASP C2886 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N GLN C2891 " --> pdb=" O ARG C2887 " (cutoff:3.500A) removed outlier: 4.590A pdb=" N ASP C2892 " --> pdb=" O GLU C2888 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N ILE C2893 " --> pdb=" O LYS C2889 " (cutoff:3.500A) removed outlier: 4.811A pdb=" N LEU C2894 " --> pdb=" O ALA C2890 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N LEU C2897 " --> pdb=" O ILE C2893 " (cutoff:3.500A) removed outlier: 3.522A pdb=" N GLN C2898 " --> pdb=" O LEU C2894 " (cutoff:3.500A) Processing helix chain 'C' and resid 2982 through 3004 Proline residue: C2990 - end of helix removed outlier: 4.043A pdb=" N GLU C3001 " --> pdb=" O ALA C2997 " (cutoff:3.500A) removed outlier: 4.803A pdb=" N LYS C3002 " --> pdb=" O SER C2998 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N GLU C3003 " --> pdb=" O ASN C2999 " (cutoff:3.500A) removed outlier: 5.502A pdb=" N MET C3004 " --> pdb=" O LYS C3000 " (cutoff:3.500A) Processing helix chain 'C' and resid 3010 through 3025 removed outlier: 3.684A pdb=" N LEU C3015 " --> pdb=" O LYS C3011 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N PHE C3023 " --> pdb=" O ARG C3019 " (cutoff:3.500A) Processing helix chain 'C' and resid 3034 through 3052 removed outlier: 4.123A pdb=" N GLN C3039 " --> pdb=" O HIS C3035 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N THR C3040 " --> pdb=" O ILE C3036 " (cutoff:3.500A) removed outlier: 3.784A pdb=" N ASP C3042 " --> pdb=" O GLY C3038 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N ARG C3044 " --> pdb=" O THR C3040 " (cutoff:3.500A) removed outlier: 4.152A pdb=" N THR C3045 " --> pdb=" O LEU C3041 " (cutoff:3.500A) removed outlier: 4.122A pdb=" N LEU C3051 " --> pdb=" O MET C3047 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N GLU C3052 " --> pdb=" O LYS C3048 " (cutoff:3.500A) Processing helix chain 'C' and resid 3061 through 3082 removed outlier: 5.054A pdb=" N ALA C3065 " --> pdb=" O PHE C3061 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N ALA C3066 " --> pdb=" O LEU C3062 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N GLU C3067 " --> pdb=" O ASP C3063 " (cutoff:3.500A) removed outlier: 5.401A pdb=" N ASP C3068 " --> pdb=" O ASN C3064 " (cutoff:3.500A) removed outlier: 5.742A pdb=" N LEU C3069 " --> pdb=" O ALA C3065 " (cutoff:3.500A) removed outlier: 5.220A pdb=" N GLU C3070 " --> pdb=" O ALA C3066 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N THR C3082 " --> pdb=" O GLN C3078 " (cutoff:3.500A) Processing helix chain 'C' and resid 3102 through 3114 removed outlier: 4.614A pdb=" N LEU C3106 " --> pdb=" O LEU C3102 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N SER C3107 " --> pdb=" O LEU C3103 " (cutoff:3.500A) removed outlier: 4.232A pdb=" N SER C3108 " --> pdb=" O PRO C3104 " (cutoff:3.500A) removed outlier: 4.770A pdb=" N LEU C3109 " --> pdb=" O MET C3105 " (cutoff:3.500A) Processing helix chain 'C' and resid 3124 through 3144 removed outlier: 4.299A pdb=" N GLN C3128 " --> pdb=" O LEU C3124 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N SER C3137 " --> pdb=" O ARG C3133 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N LEU C3138 " --> pdb=" O ILE C3134 " (cutoff:3.500A) Processing helix chain 'C' and resid 3151 through 3164 removed outlier: 4.272A pdb=" N ALA C3155 " --> pdb=" O ARG C3151 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N LEU C3156 " --> pdb=" O GLN C3152 " (cutoff:3.500A) removed outlier: 4.042A pdb=" N PHE C3163 " --> pdb=" O CYS C3159 " (cutoff:3.500A) Processing helix chain 'C' and resid 3171 through 3183 removed outlier: 3.680A pdb=" N ASN C3180 " --> pdb=" O LEU C3176 " (cutoff:3.500A) removed outlier: 4.132A pdb=" N ILE C3181 " --> pdb=" O ASP C3177 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N TYR C3182 " --> pdb=" O LYS C3178 " (cutoff:3.500A) removed outlier: 4.760A pdb=" N SER C3183 " --> pdb=" O HIS C3179 " (cutoff:3.500A) Processing helix chain 'C' and resid 3613 through 3629 removed outlier: 4.226A pdb=" N ALA C3617 " --> pdb=" O PRO C3613 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N VAL C3618 " --> pdb=" O ARG C3614 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N LYS C3627 " --> pdb=" O GLN C3623 " (cutoff:3.500A) Processing helix chain 'C' and resid 3637 through 3647 removed outlier: 4.415A pdb=" N ILE C3642 " --> pdb=" O GLU C3638 " (cutoff:3.500A) removed outlier: 4.148A pdb=" N LYS C3647 " --> pdb=" O GLU C3643 " (cutoff:3.500A) Processing helix chain 'C' and resid 3663 through 3679 removed outlier: 3.653A pdb=" N LEU C3668 " --> pdb=" O PRO C3664 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ARG C3674 " --> pdb=" O LEU C3670 " (cutoff:3.500A) removed outlier: 3.650A pdb=" N LEU C3677 " --> pdb=" O SER C3673 " (cutoff:3.500A) removed outlier: 6.085A pdb=" N GLU C3679 " --> pdb=" O THR C3675 " (cutoff:3.500A) Processing helix chain 'C' and resid 3686 through 3700 removed outlier: 3.840A pdb=" N MET C3690 " --> pdb=" O ASP C3686 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N ALA C3691 " --> pdb=" O PHE C3687 " (cutoff:3.500A) removed outlier: 4.907A pdb=" N ASP C3694 " --> pdb=" O MET C3690 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N ILE C3695 " --> pdb=" O ALA C3691 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N MET C3696 " --> pdb=" O TYR C3692 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N ALA C3697 " --> pdb=" O ALA C3693 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N SER C3699 " --> pdb=" O ILE C3695 " (cutoff:3.500A) removed outlier: 4.811A pdb=" N CYS C3700 " --> pdb=" O MET C3696 " (cutoff:3.500A) Processing helix chain 'C' and resid 3714 through 3734 removed outlier: 4.362A pdb=" N LYS C3718 " --> pdb=" O SER C3714 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N GLU C3721 " --> pdb=" O GLU C3717 " (cutoff:3.500A) removed outlier: 4.897A pdb=" N LYS C3722 " --> pdb=" O LYS C3718 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N GLN C3723 " --> pdb=" O GLU C3719 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ALA C3730 " --> pdb=" O LEU C3726 " (cutoff:3.500A) removed outlier: 4.875A pdb=" N LEU C3732 " --> pdb=" O GLN C3728 " (cutoff:3.500A) removed outlier: 3.695A pdb=" N ASP C3734 " --> pdb=" O ALA C3730 " (cutoff:3.500A) Processing helix chain 'C' and resid 3736 through 3749 removed outlier: 3.755A pdb=" N MET C3740 " --> pdb=" O GLY C3736 " (cutoff:3.500A) removed outlier: 4.063A pdb=" N VAL C3741 " --> pdb=" O ALA C3737 " (cutoff:3.500A) removed outlier: 4.066A pdb=" N LEU C3742 " --> pdb=" O ALA C3738 " (cutoff:3.500A) removed outlier: 3.973A pdb=" N THR C3744 " --> pdb=" O MET C3740 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ILE C3745 " --> pdb=" O VAL C3741 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N SER C3746 " --> pdb=" O LEU C3742 " (cutoff:3.500A) removed outlier: 4.235A pdb=" N SER C3748 " --> pdb=" O THR C3744 " (cutoff:3.500A) removed outlier: 4.860A pdb=" N LYS C3749 " --> pdb=" O ILE C3745 " (cutoff:3.500A) Processing helix chain 'C' and resid 3753 through 3768 removed outlier: 3.812A pdb=" N ALA C3758 " --> pdb=" O PRO C3754 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N THR C3759 " --> pdb=" O MET C3755 " (cutoff:3.500A) removed outlier: 4.757A pdb=" N LYS C3761 " --> pdb=" O ALA C3757 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N LEU C3762 " --> pdb=" O ALA C3758 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N LEU C3767 " --> pdb=" O GLY C3763 " (cutoff:3.500A) Processing helix chain 'C' and resid 3771 through 3785 removed outlier: 4.301A pdb=" N GLN C3775 " --> pdb=" O ASN C3771 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N GLN C3776 " --> pdb=" O SER C3772 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N LEU C3779 " --> pdb=" O GLN C3775 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N LYS C3783 " --> pdb=" O LEU C3779 " (cutoff:3.500A) Processing helix chain 'C' and resid 3787 through 3801 removed outlier: 4.774A pdb=" N PHE C3791 " --> pdb=" O ASP C3787 " (cutoff:3.500A) removed outlier: 4.745A pdb=" N SER C3800 " --> pdb=" O GLY C3796 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N CYS C3801 " --> pdb=" O LEU C3797 " (cutoff:3.500A) Processing helix chain 'C' and resid 3805 through 3819 removed outlier: 3.764A pdb=" N PHE C3809 " --> pdb=" O ASP C3805 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N GLU C3816 " --> pdb=" O GLN C3812 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N LEU C3818 " --> pdb=" O LYS C3814 " (cutoff:3.500A) Processing helix chain 'C' and resid 3829 through 3849 removed outlier: 5.734A pdb=" N ASP C3833 " --> pdb=" O LYS C3829 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ASP C3834 " --> pdb=" O VAL C3830 " (cutoff:3.500A) removed outlier: 6.951A pdb=" N GLU C3835 " --> pdb=" O LEU C3831 " (cutoff:3.500A) removed outlier: 6.308A pdb=" N PHE C3836 " --> pdb=" O GLN C3832 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N THR C3837 " --> pdb=" O ASP C3833 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ASP C3839 " --> pdb=" O GLU C3835 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE C3841 " --> pdb=" O THR C3837 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N PHE C3843 " --> pdb=" O ASP C3839 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LEU C3847 " --> pdb=" O PHE C3843 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N CYS C3848 " --> pdb=" O LEU C3844 " (cutoff:3.500A) Processing helix chain 'C' and resid 3852 through 3861 removed outlier: 4.209A pdb=" N ASN C3857 " --> pdb=" O SER C3853 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N LEU C3859 " --> pdb=" O PHE C3855 " (cutoff:3.500A) removed outlier: 4.217A pdb=" N ARG C3860 " --> pdb=" O GLN C3856 " (cutoff:3.500A) removed outlier: 4.246A pdb=" N THR C3861 " --> pdb=" O ASN C3857 " (cutoff:3.500A) Processing helix chain 'C' and resid 3870 through 3895 removed outlier: 3.560A pdb=" N TYR C3878 " --> pdb=" O SER C3874 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N LEU C3879 " --> pdb=" O THR C3875 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SER C3885 " --> pdb=" O ARG C3881 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N TYR C3893 " --> pdb=" O PHE C3889 " (cutoff:3.500A) removed outlier: 5.391A pdb=" N GLY C3895 " --> pdb=" O TRP C3891 " (cutoff:3.500A) Processing helix chain 'C' and resid 3900 through 3926 removed outlier: 3.682A pdb=" N ASN C3906 " --> pdb=" O GLN C3902 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N LYS C3909 " --> pdb=" O ARG C3905 " (cutoff:3.500A) removed outlier: 3.798A pdb=" N ALA C3910 " --> pdb=" O ASN C3906 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N VAL C3913 " --> pdb=" O LYS C3909 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N ALA C3914 " --> pdb=" O ALA C3910 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N TYR C3924 " --> pdb=" O THR C3920 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N ILE C3925 " --> pdb=" O LEU C3921 " (cutoff:3.500A) Processing helix chain 'C' and resid 3929 through 3940 removed outlier: 3.607A pdb=" N SER C3935 " --> pdb=" O GLY C3931 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N ALA C3937 " --> pdb=" O GLN C3933 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N SER C3939 " --> pdb=" O SER C3935 " (cutoff:3.500A) removed outlier: 5.506A pdb=" N ARG C3940 " --> pdb=" O LEU C3936 " (cutoff:3.500A) Processing helix chain 'C' and resid 3941 through 3961 removed outlier: 3.831A pdb=" N GLY C3947 " --> pdb=" O ASP C3943 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N HIS C3954 " --> pdb=" O HIS C3950 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N GLN C3956 " --> pdb=" O PHE C3952 " (cutoff:3.500A) removed outlier: 4.533A pdb=" N MET C3957 " --> pdb=" O ALA C3953 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N SER C3960 " --> pdb=" O GLN C3956 " (cutoff:3.500A) removed outlier: 4.364A pdb=" N GLN C3961 " --> pdb=" O MET C3957 " (cutoff:3.500A) Processing helix chain 'C' and resid 3962 through 3989 removed outlier: 4.442A pdb=" N ILE C3966 " --> pdb=" O ASP C3962 " (cutoff:3.500A) removed outlier: 5.129A pdb=" N GLU C3967 " --> pdb=" O SER C3963 " (cutoff:3.500A) removed outlier: 5.284A pdb=" N LEU C3968 " --> pdb=" O SER C3964 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N LYS C3970 " --> pdb=" O ILE C3966 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N GLU C3971 " --> pdb=" O GLU C3967 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N GLN C3976 " --> pdb=" O LEU C3972 " (cutoff:3.500A) removed outlier: 3.575A pdb=" N VAL C3980 " --> pdb=" O GLN C3976 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N VAL C3981 " --> pdb=" O LYS C3977 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N MET C3982 " --> pdb=" O ASP C3978 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N LEU C3987 " --> pdb=" O LEU C3983 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N GLU C3988 " --> pdb=" O LEU C3984 " (cutoff:3.500A) removed outlier: 5.828A pdb=" N GLY C3989 " --> pdb=" O SER C3985 " (cutoff:3.500A) Processing helix chain 'C' and resid 3994 through 4008 removed outlier: 3.606A pdb=" N LYS C3998 " --> pdb=" O GLY C3994 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N SER C4008 " --> pdb=" O LEU C4004 " (cutoff:3.500A) Processing helix chain 'C' and resid 4009 through 4028 removed outlier: 4.754A pdb=" N MET C4013 " --> pdb=" O ASN C4009 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N ILE C4014 " --> pdb=" O ASN C4010 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N PHE C4018 " --> pdb=" O ILE C4014 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N ASP C4019 " --> pdb=" O LEU C4015 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N PHE C4021 " --> pdb=" O PHE C4017 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N LYS C4023 " --> pdb=" O ASP C4019 " (cutoff:3.500A) removed outlier: 4.053A pdb=" N LEU C4024 " --> pdb=" O MET C4020 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N LYS C4025 " --> pdb=" O PHE C4021 " (cutoff:3.500A) removed outlier: 4.848A pdb=" N ASP C4026 " --> pdb=" O LEU C4022 " (cutoff:3.500A) Processing helix chain 'C' and resid 4030 through 4038 removed outlier: 3.554A pdb=" N GLU C4035 " --> pdb=" O ASP C4031 " (cutoff:3.500A) removed outlier: 5.036A pdb=" N ASP C4037 " --> pdb=" O PHE C4033 " (cutoff:3.500A) Proline residue: C4038 - end of helix Processing helix chain 'C' and resid 4045 through 4057 removed outlier: 3.721A pdb=" N PHE C4049 " --> pdb=" O SER C4045 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ALA C4052 " --> pdb=" O ASP C4048 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N GLU C4054 " --> pdb=" O HIS C4050 " (cutoff:3.500A) Processing helix chain 'C' and resid 4060 through 4071 removed outlier: 3.759A pdb=" N GLU C4065 " --> pdb=" O GLN C4061 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N PHE C4066 " --> pdb=" O SER C4062 " (cutoff:3.500A) removed outlier: 5.896A pdb=" N CYS C4070 " --> pdb=" O PHE C4066 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N ALA C4071 " --> pdb=" O LEU C4067 " (cutoff:3.500A) Processing helix chain 'C' and resid 4081 through 4110 removed outlier: 4.647A pdb=" N VAL C4085 " --> pdb=" O TYR C4081 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LYS C4086 " --> pdb=" O GLU C4082 " (cutoff:3.500A) removed outlier: 4.443A pdb=" N GLU C4090 " --> pdb=" O LYS C4086 " (cutoff:3.500A) Proline residue: C4091 - end of helix removed outlier: 4.121A pdb=" N ASP C4094 " --> pdb=" O GLU C4090 " (cutoff:3.500A) removed outlier: 4.432A pdb=" N ILE C4095 " --> pdb=" O PRO C4091 " (cutoff:3.500A) removed outlier: 4.405A pdb=" N ASN C4098 " --> pdb=" O ASP C4094 " (cutoff:3.500A) removed outlier: 4.176A pdb=" N VAL C4099 " --> pdb=" O ILE C4095 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N SER C4107 " --> pdb=" O LEU C4103 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N HIS C4109 " --> pdb=" O ASN C4105 " (cutoff:3.500A) Processing helix chain 'C' and resid 4113 through 4124 removed outlier: 3.635A pdb=" N GLN C4117 " --> pdb=" O ASP C4113 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N THR C4118 " --> pdb=" O THR C4114 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N PHE C4119 " --> pdb=" O ARG C4115 " (cutoff:3.500A) removed outlier: 3.960A pdb=" N LEU C4122 " --> pdb=" O THR C4118 " (cutoff:3.500A) removed outlier: 4.530A pdb=" N ALA C4123 " --> pdb=" O PHE C4119 " (cutoff:3.500A) removed outlier: 4.296A pdb=" N GLU C4124 " --> pdb=" O LEU C4120 " (cutoff:3.500A) Processing helix chain 'C' and resid 4125 through 4135 removed outlier: 3.626A pdb=" N TYR C4129 " --> pdb=" O SER C4125 " (cutoff:3.500A) Proline residue: C4132 - end of helix removed outlier: 6.098A pdb=" N GLY C4135 " --> pdb=" O GLN C4131 " (cutoff:3.500A) Processing helix chain 'C' and resid 4154 through 4163 removed outlier: 3.503A pdb=" N THR C4159 " --> pdb=" O GLU C4155 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLN C4160 " --> pdb=" O SER C4156 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N TRP C4161 " --> pdb=" O SER C4157 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N GLU C4162 " --> pdb=" O ARG C4158 " (cutoff:3.500A) removed outlier: 5.396A pdb=" N LYS C4163 " --> pdb=" O THR C4159 " (cutoff:3.500A) Processing helix chain 'C' and resid 4164 through 4180 removed outlier: 3.520A pdb=" N PHE C4175 " --> pdb=" O ARG C4171 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N VAL C4178 " --> pdb=" O ILE C4174 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N ASN C4179 " --> pdb=" O PHE C4175 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N GLU C4180 " --> pdb=" O ASP C4176 " (cutoff:3.500A) Processing helix chain 'C' and resid 4185 through 4207 removed outlier: 4.150A pdb=" N ASP C4196 " --> pdb=" O ASN C4192 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N PHE C4199 " --> pdb=" O GLU C4195 " (cutoff:3.500A) removed outlier: 3.873A pdb=" N ALA C4205 " --> pdb=" O MET C4201 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N GLN C4206 " --> pdb=" O GLN C4202 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ILE C4207 " --> pdb=" O LEU C4203 " (cutoff:3.500A) Processing helix chain 'C' and resid 4487 through 4500 removed outlier: 4.216A pdb=" N LYS C4491 " --> pdb=" O ALA C4487 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N TYR C4495 " --> pdb=" O LYS C4491 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N ARG C4498 " --> pdb=" O ASN C4494 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N PHE C4500 " --> pdb=" O PHE C4496 " (cutoff:3.500A) Processing helix chain 'C' and resid 4501 through 4521 removed outlier: 3.658A pdb=" N MET C4505 " --> pdb=" O TYR C4501 " (cutoff:3.500A) removed outlier: 4.580A pdb=" N LEU C4506 " --> pdb=" O ASN C4502 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N LEU C4508 " --> pdb=" O ARG C4504 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N ALA C4511 " --> pdb=" O ALA C4507 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N ALA C4513 " --> pdb=" O PHE C4509 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N ILE C4517 " --> pdb=" O ALA C4513 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N LEU C4519 " --> pdb=" O ASN C4515 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N PHE C4520 " --> pdb=" O PHE C4516 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N TYR C4521 " --> pdb=" O ILE C4517 " (cutoff:3.500A) Processing helix chain 'C' and resid 4569 through 4613 removed outlier: 3.615A pdb=" N ILE C4578 " --> pdb=" O ARG C4574 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N VAL C4582 " --> pdb=" O ILE C4578 " (cutoff:3.500A) removed outlier: 4.127A pdb=" N ILE C4588 " --> pdb=" O SER C4584 " (cutoff:3.500A) removed outlier: 4.047A pdb=" N GLY C4590 " --> pdb=" O PHE C4586 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N TYR C4591 " --> pdb=" O CYS C4587 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N CYS C4593 " --> pdb=" O ILE C4589 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LEU C4594 " --> pdb=" O GLY C4590 " (cutoff:3.500A) removed outlier: 4.487A pdb=" N VAL C4596 " --> pdb=" O TYR C4592 " (cutoff:3.500A) Proline residue: C4597 - end of helix removed outlier: 3.700A pdb=" N GLU C4606 " --> pdb=" O LYS C4602 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N LYS C4610 " --> pdb=" O GLU C4606 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N GLU C4612 " --> pdb=" O ALA C4608 " (cutoff:3.500A) removed outlier: 4.323A pdb=" N PHE C4613 " --> pdb=" O ARG C4609 " (cutoff:3.500A) Processing helix chain 'C' and resid 4626 through 4639 removed outlier: 3.638A pdb=" N ASP C4632 " --> pdb=" O LYS C4628 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N ARG C4633 " --> pdb=" O GLY C4629 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N LEU C4634 " --> pdb=" O GLN C4630 " (cutoff:3.500A) removed outlier: 4.914A pdb=" N VAL C4635 " --> pdb=" O TRP C4631 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N ILE C4636 " --> pdb=" O ASP C4632 " (cutoff:3.500A) removed outlier: 4.914A pdb=" N ASN C4637 " --> pdb=" O ARG C4633 " (cutoff:3.500A) removed outlier: 4.912A pdb=" N THR C4638 " --> pdb=" O LEU C4634 " (cutoff:3.500A) removed outlier: 5.583A pdb=" N GLN C4639 " --> pdb=" O VAL C4635 " (cutoff:3.500A) Processing helix chain 'C' and resid 4649 through 4658 removed outlier: 3.788A pdb=" N VAL C4654 " --> pdb=" O VAL C4650 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N MET C4655 " --> pdb=" O LYS C4651 " (cutoff:3.500A) Processing helix chain 'C' and resid 4663 through 4672 removed outlier: 3.514A pdb=" N ILE C4667 " --> pdb=" O GLY C4663 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N SER C4668 " --> pdb=" O ARG C4664 " (cutoff:3.500A) Processing helix chain 'C' and resid 4703 through 4718 removed outlier: 3.778A pdb=" N GLN C4707 " --> pdb=" O ASP C4703 " (cutoff:3.500A) removed outlier: 4.330A pdb=" N THR C4716 " --> pdb=" O GLY C4712 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ASP C4717 " --> pdb=" O VAL C4713 " (cutoff:3.500A) removed outlier: 5.307A pdb=" N ASN C4718 " --> pdb=" O VAL C4714 " (cutoff:3.500A) Processing helix chain 'C' and resid 4719 through 4736 removed outlier: 3.768A pdb=" N LEU C4723 " --> pdb=" O SER C4719 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N MET C4727 " --> pdb=" O LEU C4723 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N SER C4730 " --> pdb=" O TYR C4726 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N LEU C4732 " --> pdb=" O THR C4728 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N HIS C4734 " --> pdb=" O SER C4730 " (cutoff:3.500A) removed outlier: 4.258A pdb=" N TYR C4735 " --> pdb=" O VAL C4731 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N ASN C4736 " --> pdb=" O LEU C4732 " (cutoff:3.500A) Processing helix chain 'C' and resid 4737 through 4751 removed outlier: 4.861A pdb=" N ALA C4741 " --> pdb=" O ASN C4737 " (cutoff:3.500A) removed outlier: 4.350A pdb=" N ALA C4742 " --> pdb=" O PHE C4738 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N HIS C4743 " --> pdb=" O PHE C4739 " (cutoff:3.500A) removed outlier: 4.689A pdb=" N LEU C4744 " --> pdb=" O PHE C4740 " (cutoff:3.500A) removed outlier: 5.488A pdb=" N LEU C4745 " --> pdb=" O ALA C4741 " (cutoff:3.500A) removed outlier: 5.354A pdb=" N ASP C4746 " --> pdb=" O ALA C4742 " (cutoff:3.500A) removed outlier: 5.162A pdb=" N ILE C4747 " --> pdb=" O HIS C4743 " (cutoff:3.500A) removed outlier: 4.631A pdb=" N ALA C4748 " --> pdb=" O LEU C4744 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N MET C4749 " --> pdb=" O LEU C4745 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N PHE C4751 " --> pdb=" O ILE C4747 " (cutoff:3.500A) Processing helix chain 'C' and resid 4752 through 4763 removed outlier: 4.450A pdb=" N ILE C4757 " --> pdb=" O THR C4753 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N VAL C4761 " --> pdb=" O ILE C4757 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N THR C4762 " --> pdb=" O LEU C4758 " (cutoff:3.500A) Processing helix chain 'C' and resid 4764 through 4790 removed outlier: 3.711A pdb=" N LEU C4768 " --> pdb=" O ASN C4764 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LEU C4770 " --> pdb=" O LYS C4766 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N VAL C4777 " --> pdb=" O GLY C4773 " (cutoff:3.500A) removed outlier: 3.699A pdb=" N TYR C4780 " --> pdb=" O ALA C4776 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N VAL C4785 " --> pdb=" O LEU C4781 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N ALA C4786 " --> pdb=" O TYR C4782 " (cutoff:3.500A) Processing helix chain 'C' and resid 4809 through 4824 removed outlier: 4.597A pdb=" N VAL C4822 " --> pdb=" O MET C4818 " (cutoff:3.500A) removed outlier: 4.668A pdb=" N ARG C4823 " --> pdb=" O TYR C4819 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N ALA C4824 " --> pdb=" O VAL C4820 " (cutoff:3.500A) Processing helix chain 'C' and resid 4828 through 4833 removed outlier: 3.891A pdb=" N ILE C4832 " --> pdb=" O ILE C4828 " (cutoff:3.500A) removed outlier: 6.311A pdb=" N GLU C4833 " --> pdb=" O GLY C4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 4828 through 4833' Processing helix chain 'C' and resid 4840 through 4855 removed outlier: 4.152A pdb=" N PHE C4847 " --> pdb=" O TYR C4843 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N PHE C4851 " --> pdb=" O PHE C4847 " (cutoff:3.500A) Processing helix chain 'C' and resid 4859 through 4884 removed outlier: 3.656A pdb=" N ILE C4863 " --> pdb=" O LEU C4859 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N GLN C4864 " --> pdb=" O LEU C4860 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N LEU C4866 " --> pdb=" O ILE C4862 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ILE C4867 " --> pdb=" O ILE C4863 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N ALA C4870 " --> pdb=" O LEU C4866 " (cutoff:3.500A) removed outlier: 4.396A pdb=" N ASP C4876 " --> pdb=" O GLY C4872 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N GLN C4878 " --> pdb=" O LEU C4874 " (cutoff:3.500A) removed outlier: 3.960A pdb=" N GLU C4879 " --> pdb=" O ARG C4875 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N LYS C4882 " --> pdb=" O GLN C4878 " (cutoff:3.500A) Processing helix chain 'C' and resid 4895 through 4900 removed outlier: 3.817A pdb=" N PHE C4899 " --> pdb=" O GLY C4895 " (cutoff:3.500A) Processing helix chain 'C' and resid 4904 through 4912 removed outlier: 4.201A pdb=" N THR C4908 " --> pdb=" O HIS C4904 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N HIS C4909 " --> pdb=" O GLY C4905 " (cutoff:3.500A) Processing helix chain 'C' and resid 4915 through 4930 removed outlier: 4.194A pdb=" N TYR C4919 " --> pdb=" O ASN C4915 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N LEU C4920 " --> pdb=" O LEU C4916 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N LEU C4923 " --> pdb=" O TYR C4919 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N ILE C4927 " --> pdb=" O LEU C4923 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N ASN C4928 " --> pdb=" O MET C4924 " (cutoff:3.500A) removed outlier: 5.524A pdb=" N ASP C4930 " --> pdb=" O LEU C4926 " (cutoff:3.500A) Processing helix chain 'C' and resid 4935 through 4948 removed outlier: 3.579A pdb=" N SER C4939 " --> pdb=" O THR C4935 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N TYR C4940 " --> pdb=" O GLY C4936 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N TRP C4942 " --> pdb=" O GLU C4938 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N LYS C4943 " --> pdb=" O SER C4939 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLN C4946 " --> pdb=" O TRP C4942 " (cutoff:3.500A) Processing helix chain 'C' and resid 4958 through 4963 removed outlier: 6.138A pdb=" N GLN C4962 " --> pdb=" O CYS C4958 " (cutoff:3.500A) Processing helix chain 'C' and resid 398 through 403 removed outlier: 4.012A pdb=" N ASP C 401 " --> pdb=" O HIS C 398 " (cutoff:3.500A) removed outlier: 5.057A pdb=" N GLY C 402 " --> pdb=" O MET C 399 " (cutoff:3.500A) removed outlier: 4.610A pdb=" N LEU C 403 " --> pdb=" O ASP C 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 398 through 403' Processing helix chain 'C' and resid 915 through 920 removed outlier: 3.893A pdb=" N LEU C 918 " --> pdb=" O HIS C 915 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N VAL C 919 " --> pdb=" O PRO C 916 " (cutoff:3.500A) removed outlier: 5.620A pdb=" N GLU C 920 " --> pdb=" O CYS C 917 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 915 through 920' Processing helix chain 'E' and resid 61 through 66 removed outlier: 4.734A pdb=" N CYS E 65 " --> pdb=" O ASP E 61 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N THR E 66 " --> pdb=" O LEU E 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 61 through 66' Processing helix chain 'E' and resid 74 through 84 removed outlier: 3.526A pdb=" N ALA E 83 " --> pdb=" O GLN E 79 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ASN E 84 " --> pdb=" O GLU E 80 " (cutoff:3.500A) Processing helix chain 'E' and resid 265 through 271 removed outlier: 4.727A pdb=" N VAL E 269 " --> pdb=" O GLY E 265 " (cutoff:3.500A) removed outlier: 5.680A pdb=" N ALA E 271 " --> pdb=" O VAL E 267 " (cutoff:3.500A) Processing helix chain 'E' and resid 323 through 328 removed outlier: 3.877A pdb=" N ALA E 328 " --> pdb=" O VAL E 324 " (cutoff:3.500A) Processing helix chain 'E' and resid 409 through 438 removed outlier: 3.617A pdb=" N ARG E 420 " --> pdb=" O ALA E 416 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N LEU E 425 " --> pdb=" O SER E 421 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ARG E 428 " --> pdb=" O PHE E 424 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N LEU E 436 " --> pdb=" O GLY E 432 " (cutoff:3.500A) removed outlier: 4.135A pdb=" N LYS E 438 " --> pdb=" O ASP E 434 " (cutoff:3.500A) Processing helix chain 'E' and resid 448 through 464 removed outlier: 4.796A pdb=" N VAL E 452 " --> pdb=" O PRO E 448 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N LEU E 454 " --> pdb=" O GLU E 450 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N SER E 455 " --> pdb=" O SER E 451 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N GLN E 457 " --> pdb=" O SER E 453 " (cutoff:3.500A) Processing helix chain 'E' and resid 471 through 493 removed outlier: 4.269A pdb=" N GLN E 476 " --> pdb=" O HIS E 472 " (cutoff:3.500A) removed outlier: 4.345A pdb=" N ASN E 477 " --> pdb=" O GLU E 473 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N GLU E 492 " --> pdb=" O LEU E 488 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N GLY E 493 " --> pdb=" O PHE E 489 " (cutoff:3.500A) Processing helix chain 'E' and resid 494 through 507 removed outlier: 4.090A pdb=" N CYS E 501 " --> pdb=" O LEU E 497 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N HIS E 506 " --> pdb=" O ILE E 502 " (cutoff:3.500A) removed outlier: 5.379A pdb=" N VAL E 507 " --> pdb=" O ASP E 503 " (cutoff:3.500A) Processing helix chain 'E' and resid 519 through 542 removed outlier: 3.501A pdb=" N GLY E 523 " --> pdb=" O GLY E 519 " (cutoff:3.500A) removed outlier: 4.961A pdb=" N GLU E 524 " --> pdb=" O ARG E 520 " (cutoff:3.500A) removed outlier: 5.522A pdb=" N SER E 525 " --> pdb=" O GLU E 521 " (cutoff:3.500A) removed outlier: 6.168A pdb=" N TRP E 526 " --> pdb=" O ALA E 522 " (cutoff:3.500A) removed outlier: 6.279A pdb=" N LYS E 527 " --> pdb=" O GLY E 523 " (cutoff:3.500A) removed outlier: 5.780A pdb=" N SER E 528 " --> pdb=" O GLU E 524 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N SER E 532 " --> pdb=" O SER E 528 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N GLU E 535 " --> pdb=" O ASN E 531 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N LEU E 536 " --> pdb=" O SER E 532 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N ILE E 541 " --> pdb=" O LEU E 537 " (cutoff:3.500A) removed outlier: 3.784A pdb=" N ARG E 542 " --> pdb=" O ALA E 538 " (cutoff:3.500A) Processing helix chain 'E' and resid 544 through 553 removed outlier: 3.630A pdb=" N GLN E 550 " --> pdb=" O LYS E 546 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N SER E 552 " --> pdb=" O CYS E 548 " (cutoff:3.500A) removed outlier: 5.226A pdb=" N GLY E 553 " --> pdb=" O ALA E 549 " (cutoff:3.500A) Processing helix chain 'E' and resid 554 through 563 removed outlier: 4.392A pdb=" N GLU E 563 " --> pdb=" O ILE E 559 " (cutoff:3.500A) Processing helix chain 'E' and resid 564 through 582 removed outlier: 6.398A pdb=" N SER E 568 " --> pdb=" O ARG E 564 " (cutoff:3.500A) removed outlier: 7.166A pdb=" N SER E 569 " --> pdb=" O LEU E 565 " (cutoff:3.500A) removed outlier: 6.947A pdb=" N GLY E 570 " --> pdb=" O GLU E 566 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N VAL E 580 " --> pdb=" O HIS E 576 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N GLU E 581 " --> pdb=" O CYS E 577 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N SER E 582 " --> pdb=" O VAL E 578 " (cutoff:3.500A) Processing helix chain 'E' and resid 583 through 589 removed outlier: 3.835A pdb=" N ASN E 587 " --> pdb=" O PRO E 583 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ILE E 588 " --> pdb=" O GLU E 584 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N ILE E 589 " --> pdb=" O ALA E 585 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 583 through 589' Processing helix chain 'E' and resid 590 through 605 removed outlier: 3.544A pdb=" N LEU E 601 " --> pdb=" O ILE E 597 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N GLY E 605 " --> pdb=" O LEU E 601 " (cutoff:3.500A) Processing helix chain 'E' and resid 607 through 620 removed outlier: 3.870A pdb=" N LEU E 611 " --> pdb=" O ASN E 607 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N SER E 616 " --> pdb=" O ASP E 612 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N CYS E 618 " --> pdb=" O LEU E 614 " (cutoff:3.500A) removed outlier: 4.137A pdb=" N VAL E 619 " --> pdb=" O CYS E 615 " (cutoff:3.500A) removed outlier: 4.502A pdb=" N CYS E 620 " --> pdb=" O SER E 616 " (cutoff:3.500A) Processing helix chain 'E' and resid 625 through 640 removed outlier: 3.864A pdb=" N HIS E 630 " --> pdb=" O ARG E 626 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N LEU E 631 " --> pdb=" O SER E 627 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N LEU E 637 " --> pdb=" O CYS E 633 " (cutoff:3.500A) Proline residue: E 638 - end of helix Processing helix chain 'E' and resid 821 through 828 removed outlier: 4.105A pdb=" N ALA E 825 " --> pdb=" O PRO E 821 " (cutoff:3.500A) removed outlier: 4.198A pdb=" N VAL E 826 " --> pdb=" O CYS E 822 " (cutoff:3.500A) removed outlier: 4.902A pdb=" N LEU E 827 " --> pdb=" O TYR E 823 " (cutoff:3.500A) Proline residue: E 828 - end of helix No H-bonds generated for 'chain 'E' and resid 821 through 828' Processing helix chain 'E' and resid 876 through 901 removed outlier: 4.306A pdb=" N LEU E 892 " --> pdb=" O ASN E 888 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N LYS E 897 " --> pdb=" O TRP E 893 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N GLU E 899 " --> pdb=" O MET E 895 " (cutoff:3.500A) removed outlier: 4.826A pdb=" N LEU E 900 " --> pdb=" O ASN E 896 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N GLY E 901 " --> pdb=" O LYS E 897 " (cutoff:3.500A) Processing helix chain 'E' and resid 929 through 946 removed outlier: 4.000A pdb=" N MET E 935 " --> pdb=" O TYR E 931 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N GLU E 938 " --> pdb=" O GLN E 934 " (cutoff:3.500A) removed outlier: 4.034A pdb=" N LEU E 944 " --> pdb=" O LEU E 940 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ALA E 945 " --> pdb=" O LYS E 941 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N LEU E 946 " --> pdb=" O THR E 942 " (cutoff:3.500A) Processing helix chain 'E' and resid 989 through 1012 removed outlier: 3.879A pdb=" N GLU E 993 " --> pdb=" O THR E 989 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N ASP E 997 " --> pdb=" O GLU E 993 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N LYS E 998 " --> pdb=" O ALA E 994 " (cutoff:3.500A) Processing helix chain 'E' and resid 1042 through 1061 removed outlier: 4.660A pdb=" N ASN E1046 " --> pdb=" O THR E1042 " (cutoff:3.500A) Processing helix chain 'E' and resid 1226 through 1231 removed outlier: 3.953A pdb=" N GLY E1231 " --> pdb=" O PHE E1227 " (cutoff:3.500A) Processing helix chain 'E' and resid 1571 through 1577 removed outlier: 4.500A pdb=" N HIS E1575 " --> pdb=" O PHE E1571 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N LYS E1576 " --> pdb=" O LYS E1572 " (cutoff:3.500A) removed outlier: 5.798A pdb=" N ASN E1577 " --> pdb=" O SER E1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1571 through 1577' Processing helix chain 'E' and resid 1640 through 1648 removed outlier: 4.444A pdb=" N LEU E1644 " --> pdb=" O ASP E1640 " (cutoff:3.500A) removed outlier: 4.934A pdb=" N THR E1645 " --> pdb=" O ILE E1641 " (cutoff:3.500A) removed outlier: 5.254A pdb=" N GLU E1646 " --> pdb=" O LEU E1642 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N GLN E1647 " --> pdb=" O GLU E1643 " (cutoff:3.500A) removed outlier: 4.910A pdb=" N GLU E1648 " --> pdb=" O LEU E1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1640 through 1648' Processing helix chain 'E' and resid 1649 through 1666 removed outlier: 3.842A pdb=" N HIS E1654 " --> pdb=" O LEU E1650 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SER E1662 " --> pdb=" O LEU E1658 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N CYS E1665 " --> pdb=" O TYR E1661 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N ALA E1666 " --> pdb=" O SER E1662 " (cutoff:3.500A) Processing helix chain 'E' and resid 1669 through 1680 removed outlier: 4.609A pdb=" N HIS E1674 " --> pdb=" O HIS E1670 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N SER E1678 " --> pdb=" O HIS E1674 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N HIS E1679 " --> pdb=" O ALA E1675 " (cutoff:3.500A) Processing helix chain 'E' and resid 1681 through 1691 removed outlier: 4.316A pdb=" N LEU E1685 " --> pdb=" O ASP E1681 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N GLU E1690 " --> pdb=" O LEU E1686 " (cutoff:3.500A) Processing helix chain 'E' and resid 1695 through 1710 removed outlier: 3.757A pdb=" N ALA E1700 " --> pdb=" O GLY E1696 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N TYR E1702 " --> pdb=" O LEU E1698 " (cutoff:3.500A) Processing helix chain 'E' and resid 1711 through 1723 removed outlier: 4.373A pdb=" N THR E1716 " --> pdb=" O SER E1712 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N ALA E1717 " --> pdb=" O SER E1713 " (cutoff:3.500A) removed outlier: 4.255A pdb=" N MET E1721 " --> pdb=" O ALA E1717 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N ASN E1722 " --> pdb=" O ARG E1718 " (cutoff:3.500A) removed outlier: 6.251A pdb=" N ASN E1723 " --> pdb=" O LEU E1719 " (cutoff:3.500A) Processing helix chain 'E' and resid 1730 through 1736 removed outlier: 4.343A pdb=" N ILE E1736 " --> pdb=" O GLU E1732 " (cutoff:3.500A) Processing helix chain 'E' and resid 1771 through 1776 Processing helix chain 'E' and resid 1783 through 1803 removed outlier: 3.709A pdb=" N LEU E1787 " --> pdb=" O PRO E1783 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N ALA E1789 " --> pdb=" O ASP E1785 " (cutoff:3.500A) removed outlier: 4.116A pdb=" N ILE E1792 " --> pdb=" O LYS E1788 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N GLU E1801 " --> pdb=" O GLU E1797 " (cutoff:3.500A) Processing helix chain 'E' and resid 1813 through 1832 removed outlier: 3.615A pdb=" N LEU E1817 " --> pdb=" O THR E1813 " (cutoff:3.500A) Proline residue: E1820 - end of helix removed outlier: 4.351A pdb=" N LEU E1824 " --> pdb=" O PRO E1820 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N MET E1831 " --> pdb=" O THR E1827 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N GLY E1832 " --> pdb=" O LEU E1828 " (cutoff:3.500A) Processing helix chain 'E' and resid 1836 through 1847 removed outlier: 4.197A pdb=" N HIS E1841 " --> pdb=" O GLU E1837 " (cutoff:3.500A) removed outlier: 4.139A pdb=" N GLN E1844 " --> pdb=" O LYS E1840 " (cutoff:3.500A) removed outlier: 4.259A pdb=" N LEU E1845 " --> pdb=" O HIS E1841 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N ILE E1846 " --> pdb=" O ILE E1842 " (cutoff:3.500A) Processing helix chain 'E' and resid 1901 through 1952 removed outlier: 4.222A pdb=" N GLN E1906 " --> pdb=" O PRO E1902 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU E1909 " --> pdb=" O LEU E1905 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N TYR E1913 " --> pdb=" O LEU E1909 " (cutoff:3.500A) removed outlier: 3.683A pdb=" N LEU E1914 " --> pdb=" O LEU E1910 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N GLN E1918 " --> pdb=" O LEU E1914 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N VAL E1919 " --> pdb=" O CYS E1915 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ARG E1920 " --> pdb=" O ASP E1916 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N GLU E1924 " --> pdb=" O ARG E1920 " (cutoff:3.500A) removed outlier: 4.808A pdb=" N ASP E1932 " --> pdb=" O ALA E1928 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N VAL E1934 " --> pdb=" O SER E1930 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N LEU E1937 " --> pdb=" O PHE E1933 " (cutoff:3.500A) removed outlier: 4.608A pdb=" N ASP E1939 " --> pdb=" O ALA E1935 " (cutoff:3.500A) removed outlier: 5.217A pdb=" N ASN E1940 " --> pdb=" O LYS E1936 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N GLN E1941 " --> pdb=" O LEU E1937 " (cutoff:3.500A) removed outlier: 4.347A pdb=" N ARG E1942 " --> pdb=" O GLN E1938 " (cutoff:3.500A) removed outlier: 4.137A pdb=" N GLN E1950 " --> pdb=" O ASN E1946 " (cutoff:3.500A) Processing helix chain 'E' and resid 1991 through 1998 removed outlier: 3.525A pdb=" N GLN E1996 " --> pdb=" O GLU E1992 " (cutoff:3.500A) removed outlier: 4.703A pdb=" N LEU E1998 " --> pdb=" O ARG E1994 " (cutoff:3.500A) Processing helix chain 'E' and resid 1999 through 2013 removed outlier: 3.843A pdb=" N ILE E2010 " --> pdb=" O THR E2006 " (cutoff:3.500A) removed outlier: 4.580A pdb=" N GLU E2011 " --> pdb=" O HIS E2007 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N LEU E2012 " --> pdb=" O CYS E2008 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N ASP E2013 " --> pdb=" O GLY E2009 " (cutoff:3.500A) Processing helix chain 'E' and resid 2024 through 2038 removed outlier: 5.236A pdb=" N GLY E2028 " --> pdb=" O LEU E2024 " (cutoff:3.500A) removed outlier: 4.598A pdb=" N ARG E2029 " --> pdb=" O THR E2025 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N LEU E2030 " --> pdb=" O ILE E2026 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LEU E2031 " --> pdb=" O ARG E2027 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N GLU E2035 " --> pdb=" O LEU E2031 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N THR E2038 " --> pdb=" O VAL E2034 " (cutoff:3.500A) Processing helix chain 'E' and resid 2058 through 2074 removed outlier: 3.858A pdb=" N LEU E2062 " --> pdb=" O THR E2058 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N SER E2064 " --> pdb=" O GLN E2060 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N VAL E2068 " --> pdb=" O SER E2064 " (cutoff:3.500A) removed outlier: 3.820A pdb=" N GLU E2073 " --> pdb=" O ARG E2069 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N SER E2074 " --> pdb=" O TRP E2070 " (cutoff:3.500A) Processing helix chain 'E' and resid 2078 through 2095 removed outlier: 4.018A pdb=" N VAL E2082 " --> pdb=" O ASP E2078 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N LEU E2088 " --> pdb=" O ALA E2084 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N GLN E2092 " --> pdb=" O LEU E2088 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N TYR E2093 " --> pdb=" O LEU E2089 " (cutoff:3.500A) removed outlier: 4.173A pdb=" N GLY E2095 " --> pdb=" O ARG E2091 " (cutoff:3.500A) Processing helix chain 'E' and resid 2096 through 2107 Proline residue: E2104 - end of helix removed outlier: 5.989A pdb=" N TYR E2107 " --> pdb=" O LEU E2103 " (cutoff:3.500A) Processing helix chain 'E' and resid 2110 through 2132 removed outlier: 3.805A pdb=" N VAL E2114 " --> pdb=" O ASN E2110 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N GLU E2115 " --> pdb=" O GLY E2111 " (cutoff:3.500A) removed outlier: 5.821A pdb=" N ASP E2116 " --> pdb=" O VAL E2112 " (cutoff:3.500A) removed outlier: 4.019A pdb=" N THR E2117 " --> pdb=" O SER E2113 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N ILE E2118 " --> pdb=" O VAL E2114 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N ASN E2119 " --> pdb=" O GLU E2115 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N GLN E2126 " --> pdb=" O ALA E2122 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N ILE E2127 " --> pdb=" O SER E2123 " (cutoff:3.500A) removed outlier: 4.833A pdb=" N SER E2132 " --> pdb=" O ARG E2128 " (cutoff:3.500A) Processing helix chain 'E' and resid 2140 through 2153 removed outlier: 3.878A pdb=" N ASN E2153 " --> pdb=" O ASP E2149 " (cutoff:3.500A) Processing helix chain 'E' and resid 2154 through 2160 removed outlier: 4.207A pdb=" N GLN E2158 " --> pdb=" O LYS E2154 " (cutoff:3.500A) removed outlier: 5.843A pdb=" N HIS E2159 " --> pdb=" O VAL E2155 " (cutoff:3.500A) Proline residue: E2160 - end of helix No H-bonds generated for 'chain 'E' and resid 2154 through 2160' Processing helix chain 'E' and resid 2161 through 2167 removed outlier: 4.071A pdb=" N GLY E2167 " --> pdb=" O MET E2163 " (cutoff:3.500A) Processing helix chain 'E' and resid 2168 through 2181 removed outlier: 3.974A pdb=" N VAL E2172 " --> pdb=" O MET E2168 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N GLY E2181 " --> pdb=" O VAL E2177 " (cutoff:3.500A) Processing helix chain 'E' and resid 2191 through 2209 removed outlier: 4.040A pdb=" N ALA E2195 " --> pdb=" O PRO E2191 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N ASN E2196 " --> pdb=" O LYS E2192 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N ARG E2199 " --> pdb=" O ALA E2195 " (cutoff:3.500A) removed outlier: 4.379A pdb=" N PHE E2200 " --> pdb=" O ASN E2196 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N LEU E2201 " --> pdb=" O CYS E2197 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N ARG E2206 " --> pdb=" O CYS E2202 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N ILE E2207 " --> pdb=" O TYR E2203 " (cutoff:3.500A) removed outlier: 4.923A pdb=" N SER E2208 " --> pdb=" O PHE E2204 " (cutoff:3.500A) removed outlier: 5.266A pdb=" N ARG E2209 " --> pdb=" O CYS E2205 " (cutoff:3.500A) Processing helix chain 'E' and resid 2210 through 2217 removed outlier: 4.251A pdb=" N ASP E2217 " --> pdb=" O LYS E2213 " (cutoff:3.500A) Processing helix chain 'E' and resid 2218 through 2225 removed outlier: 4.620A pdb=" N GLU E2224 " --> pdb=" O SER E2220 " (cutoff:3.500A) removed outlier: 4.442A pdb=" N ASN E2225 " --> pdb=" O TYR E2221 " (cutoff:3.500A) Processing helix chain 'E' and resid 2239 through 2249 removed outlier: 4.146A pdb=" N VAL E2243 " --> pdb=" O THR E2239 " (cutoff:3.500A) removed outlier: 4.473A pdb=" N ALA E2244 " --> pdb=" O PRO E2240 " (cutoff:3.500A) removed outlier: 3.976A pdb=" N VAL E2248 " --> pdb=" O ALA E2244 " (cutoff:3.500A) Processing helix chain 'E' and resid 2251 through 2258 removed outlier: 3.769A pdb=" N LEU E2258 " --> pdb=" O LEU E2254 " (cutoff:3.500A) Processing helix chain 'E' and resid 2259 through 2274 removed outlier: 3.676A pdb=" N LEU E2263 " --> pdb=" O ARG E2259 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N LYS E2265 " --> pdb=" O PRO E2261 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N VAL E2266 " --> pdb=" O ASP E2262 " (cutoff:3.500A) removed outlier: 4.428A pdb=" N GLY E2274 " --> pdb=" O LEU E2270 " (cutoff:3.500A) Processing helix chain 'E' and resid 2295 through 2308 removed outlier: 3.583A pdb=" N TYR E2299 " --> pdb=" O GLU E2295 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N ASP E2301 " --> pdb=" O GLU E2297 " (cutoff:3.500A) removed outlier: 4.463A pdb=" N PHE E2305 " --> pdb=" O ASP E2301 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N ALA E2306 " --> pdb=" O PHE E2302 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N VAL E2307 " --> pdb=" O LEU E2303 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N PHE E2308 " --> pdb=" O ARG E2304 " (cutoff:3.500A) Processing helix chain 'E' and resid 2314 through 2329 removed outlier: 4.123A pdb=" N ARG E2328 " --> pdb=" O LEU E2324 " (cutoff:3.500A) Proline residue: E2329 - end of helix Processing helix chain 'E' and resid 2343 through 2354 removed outlier: 4.537A pdb=" N MET E2348 " --> pdb=" O LEU E2344 " (cutoff:3.500A) removed outlier: 4.012A pdb=" N GLU E2349 " --> pdb=" O LEU E2345 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N ILE E2352 " --> pdb=" O MET E2348 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N LYS E2353 " --> pdb=" O GLU E2349 " (cutoff:3.500A) removed outlier: 4.234A pdb=" N ILE E2354 " --> pdb=" O GLU E2350 " (cutoff:3.500A) Processing helix chain 'E' and resid 2387 through 2404 removed outlier: 3.690A pdb=" N THR E2391 " --> pdb=" O ASN E2387 " (cutoff:3.500A) removed outlier: 3.884A pdb=" N ALA E2394 " --> pdb=" O MET E2390 " (cutoff:3.500A) removed outlier: 4.718A pdb=" N ALA E2404 " --> pdb=" O LEU E2400 " (cutoff:3.500A) Processing helix chain 'E' and resid 2408 through 2413 removed outlier: 3.535A pdb=" N ALA E2412 " --> pdb=" O HIS E2408 " (cutoff:3.500A) Processing helix chain 'E' and resid 2414 through 2428 removed outlier: 5.302A pdb=" N ILE E2418 " --> pdb=" O LYS E2414 " (cutoff:3.500A) removed outlier: 6.583A pdb=" N ARG E2419 " --> pdb=" O GLY E2415 " (cutoff:3.500A) removed outlier: 4.716A pdb=" N ILE E2420 " --> pdb=" O GLU E2416 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N ARG E2421 " --> pdb=" O ALA E2417 " (cutoff:3.500A) Processing helix chain 'E' and resid 2432 through 2437 Processing helix chain 'E' and resid 2462 through 2477 removed outlier: 4.354A pdb=" N LYS E2466 " --> pdb=" O CYS E2462 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N LEU E2471 " --> pdb=" O ALA E2467 " (cutoff:3.500A) Processing helix chain 'E' and resid 2481 through 2489 removed outlier: 3.885A pdb=" N LEU E2485 " --> pdb=" O VAL E2481 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N LEU E2486 " --> pdb=" O GLN E2482 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N LEU E2488 " --> pdb=" O PHE E2484 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N LEU E2489 " --> pdb=" O LEU E2485 " (cutoff:3.500A) Processing helix chain 'E' and resid 2492 through 2500 removed outlier: 3.632A pdb=" N ASP E2496 " --> pdb=" O GLY E2492 " (cutoff:3.500A) removed outlier: 4.223A pdb=" N LEU E2497 " --> pdb=" O PHE E2493 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N ARG E2498 " --> pdb=" O LEU E2494 " (cutoff:3.500A) Processing helix chain 'E' and resid 2511 through 2528 removed outlier: 4.548A pdb=" N ALA E2516 " --> pdb=" O ASP E2512 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N LEU E2517 " --> pdb=" O MET E2513 " (cutoff:3.500A) removed outlier: 4.627A pdb=" N ASN E2518 " --> pdb=" O ALA E2514 " (cutoff:3.500A) removed outlier: 5.353A pdb=" N CYS E2522 " --> pdb=" O ASN E2518 " (cutoff:3.500A) removed outlier: 4.446A pdb=" N THR E2523 " --> pdb=" O ARG E2519 " (cutoff:3.500A) removed outlier: 4.959A pdb=" N VAL E2525 " --> pdb=" O LEU E2521 " (cutoff:3.500A) Proline residue: E2527 - end of helix Processing helix chain 'E' and resid 2537 through 2553 removed outlier: 3.669A pdb=" N HIS E2541 " --> pdb=" O ALA E2537 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N ILE E2546 " --> pdb=" O HIS E2542 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N HIS E2551 " --> pdb=" O ASP E2547 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N THR E2552 " --> pdb=" O SER E2548 " (cutoff:3.500A) Processing helix chain 'E' and resid 2559 through 2576 removed outlier: 4.827A pdb=" N THR E2563 " --> pdb=" O GLY E2559 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N LYS E2564 " --> pdb=" O CYS E2560 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N ALA E2565 " --> pdb=" O SER E2561 " (cutoff:3.500A) removed outlier: 3.797A pdb=" N VAL E2572 " --> pdb=" O ASP E2568 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N LEU E2574 " --> pdb=" O ILE E2570 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N LEU E2575 " --> pdb=" O GLU E2571 " (cutoff:3.500A) removed outlier: 4.739A pdb=" N SER E2576 " --> pdb=" O VAL E2572 " (cutoff:3.500A) Processing helix chain 'E' and resid 2583 through 2601 removed outlier: 4.234A pdb=" N ARG E2591 " --> pdb=" O GLN E2587 " (cutoff:3.500A) removed outlier: 3.792A pdb=" N ARG E2592 " --> pdb=" O HIS E2588 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LEU E2593 " --> pdb=" O LEU E2589 " (cutoff:3.500A) removed outlier: 6.192A pdb=" N VAL E2594 " --> pdb=" O LEU E2590 " (cutoff:3.500A) removed outlier: 4.155A pdb=" N PHE E2595 " --> pdb=" O ARG E2591 " (cutoff:3.500A) removed outlier: 4.185A pdb=" N ASP E2596 " --> pdb=" O ARG E2592 " (cutoff:3.500A) Proline residue: E2598 - end of helix removed outlier: 4.124A pdb=" N ASN E2601 " --> pdb=" O VAL E2597 " (cutoff:3.500A) Processing helix chain 'E' and resid 2605 through 2627 removed outlier: 3.695A pdb=" N LYS E2609 " --> pdb=" O LYS E2605 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N TYR E2615 " --> pdb=" O LEU E2611 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N ARG E2617 " --> pdb=" O ASN E2613 " (cutoff:3.500A) removed outlier: 4.285A pdb=" N CYS E2618 " --> pdb=" O HIS E2614 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N LYS E2620 " --> pdb=" O GLU E2616 " (cutoff:3.500A) removed outlier: 5.033A pdb=" N TYR E2621 " --> pdb=" O ARG E2617 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N TYR E2622 " --> pdb=" O CYS E2618 " (cutoff:3.500A) removed outlier: 4.174A pdb=" N CYS E2623 " --> pdb=" O TRP E2619 " (cutoff:3.500A) Proline residue: E2625 - end of helix Processing helix chain 'E' and resid 2635 through 2653 removed outlier: 3.822A pdb=" N ASP E2651 " --> pdb=" O TRP E2647 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N ALA E2652 " --> pdb=" O GLY E2648 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LEU E2653 " --> pdb=" O ILE E2649 " (cutoff:3.500A) Processing helix chain 'E' and resid 2658 through 2678 removed outlier: 4.680A pdb=" N LEU E2662 " --> pdb=" O TYR E2658 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N PHE E2663 " --> pdb=" O GLU E2659 " (cutoff:3.500A) removed outlier: 4.499A pdb=" N LEU E2665 " --> pdb=" O GLU E2661 " (cutoff:3.500A) removed outlier: 4.207A pdb=" N ALA E2666 " --> pdb=" O LEU E2662 " (cutoff:3.500A) Proline residue: E2668 - end of helix removed outlier: 4.130A pdb=" N SER E2671 " --> pdb=" O LEU E2667 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N ALA E2672 " --> pdb=" O PRO E2668 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N ALA E2676 " --> pdb=" O ALA E2672 " (cutoff:3.500A) removed outlier: 4.883A pdb=" N LEU E2677 " --> pdb=" O VAL E2673 " (cutoff:3.500A) Proline residue: E2678 - end of helix Processing helix chain 'E' and resid 2715 through 2739 removed outlier: 3.609A pdb=" N GLU E2719 " --> pdb=" O PRO E2715 " (cutoff:3.500A) removed outlier: 4.793A pdb=" N TYR E2720 " --> pdb=" O GLU E2716 " (cutoff:3.500A) removed outlier: 5.132A pdb=" N PHE E2721 " --> pdb=" O LYS E2717 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N LYS E2737 " --> pdb=" O TRP E2733 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N ALA E2739 " --> pdb=" O MET E2735 " (cutoff:3.500A) Processing helix chain 'E' and resid 2765 through 2774 removed outlier: 3.888A pdb=" N LYS E2769 " --> pdb=" O SER E2765 " (cutoff:3.500A) removed outlier: 5.651A pdb=" N GLU E2770 " --> pdb=" O GLU E2766 " (cutoff:3.500A) removed outlier: 5.201A pdb=" N ILE E2771 " --> pdb=" O LYS E2767 " (cutoff:3.500A) removed outlier: 4.662A pdb=" N TYR E2772 " --> pdb=" O GLU E2768 " (cutoff:3.500A) Processing helix chain 'E' and resid 2775 through 2786 removed outlier: 4.034A pdb=" N SER E2779 " --> pdb=" O PRO E2775 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N LEU E2780 " --> pdb=" O ILE E2776 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N LYS E2781 " --> pdb=" O LYS E2777 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N THR E2782 " --> pdb=" O GLU E2778 " (cutoff:3.500A) removed outlier: 4.231A pdb=" N MET E2783 " --> pdb=" O SER E2779 " (cutoff:3.500A) removed outlier: 4.514A pdb=" N ALA E2785 " --> pdb=" O LYS E2781 " (cutoff:3.500A) removed outlier: 4.746A pdb=" N TRP E2786 " --> pdb=" O THR E2782 " (cutoff:3.500A) Processing helix chain 'E' and resid 2836 through 2865 removed outlier: 5.337A pdb=" N ALA E2840 " --> pdb=" O ARG E2836 " (cutoff:3.500A) removed outlier: 4.957A pdb=" N MET E2841 " --> pdb=" O ASP E2837 " (cutoff:3.500A) removed outlier: 3.907A pdb=" N LYS E2855 " --> pdb=" O ASN E2851 " (cutoff:3.500A) removed outlier: 4.303A pdb=" N LEU E2861 " --> pdb=" O LYS E2857 " (cutoff:3.500A) removed outlier: 5.223A pdb=" N GLU E2862 " --> pdb=" O LYS E2858 " (cutoff:3.500A) removed outlier: 5.533A pdb=" N SER E2863 " --> pdb=" O LEU E2859 " (cutoff:3.500A) removed outlier: 5.008A pdb=" N LYS E2864 " --> pdb=" O GLU E2860 " (cutoff:3.500A) removed outlier: 6.071A pdb=" N GLY E2865 " --> pdb=" O LEU E2861 " (cutoff:3.500A) Processing helix chain 'E' and resid 2879 through 2901 removed outlier: 4.542A pdb=" N LYS E2883 " --> pdb=" O THR E2879 " (cutoff:3.500A) removed outlier: 5.673A pdb=" N LYS E2885 " --> pdb=" O LYS E2881 " (cutoff:3.500A) removed outlier: 5.149A pdb=" N ASP E2886 " --> pdb=" O GLU E2882 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N GLU E2888 " --> pdb=" O ALA E2884 " (cutoff:3.500A) removed outlier: 4.290A pdb=" N LYS E2889 " --> pdb=" O LYS E2885 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N ALA E2890 " --> pdb=" O ASP E2886 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N GLN E2891 " --> pdb=" O ARG E2887 " (cutoff:3.500A) removed outlier: 4.590A pdb=" N ASP E2892 " --> pdb=" O GLU E2888 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N ILE E2893 " --> pdb=" O LYS E2889 " (cutoff:3.500A) removed outlier: 4.811A pdb=" N LEU E2894 " --> pdb=" O ALA E2890 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N LEU E2897 " --> pdb=" O ILE E2893 " (cutoff:3.500A) removed outlier: 3.522A pdb=" N GLN E2898 " --> pdb=" O LEU E2894 " (cutoff:3.500A) Processing helix chain 'E' and resid 2982 through 3004 Proline residue: E2990 - end of helix removed outlier: 4.042A pdb=" N GLU E3001 " --> pdb=" O ALA E2997 " (cutoff:3.500A) removed outlier: 4.803A pdb=" N LYS E3002 " --> pdb=" O SER E2998 " (cutoff:3.500A) removed outlier: 3.907A pdb=" N GLU E3003 " --> pdb=" O ASN E2999 " (cutoff:3.500A) removed outlier: 5.501A pdb=" N MET E3004 " --> pdb=" O LYS E3000 " (cutoff:3.500A) Processing helix chain 'E' and resid 3010 through 3025 removed outlier: 3.684A pdb=" N LEU E3015 " --> pdb=" O LYS E3011 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N PHE E3023 " --> pdb=" O ARG E3019 " (cutoff:3.500A) Processing helix chain 'E' and resid 3034 through 3052 removed outlier: 4.123A pdb=" N GLN E3039 " --> pdb=" O HIS E3035 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N THR E3040 " --> pdb=" O ILE E3036 " (cutoff:3.500A) removed outlier: 3.785A pdb=" N ASP E3042 " --> pdb=" O GLY E3038 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N ARG E3044 " --> pdb=" O THR E3040 " (cutoff:3.500A) removed outlier: 4.151A pdb=" N THR E3045 " --> pdb=" O LEU E3041 " (cutoff:3.500A) removed outlier: 4.122A pdb=" N LEU E3051 " --> pdb=" O MET E3047 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N GLU E3052 " --> pdb=" O LYS E3048 " (cutoff:3.500A) Processing helix chain 'E' and resid 3061 through 3082 removed outlier: 5.054A pdb=" N ALA E3065 " --> pdb=" O PHE E3061 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N ALA E3066 " --> pdb=" O LEU E3062 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N GLU E3067 " --> pdb=" O ASP E3063 " (cutoff:3.500A) removed outlier: 5.401A pdb=" N ASP E3068 " --> pdb=" O ASN E3064 " (cutoff:3.500A) removed outlier: 5.742A pdb=" N LEU E3069 " --> pdb=" O ALA E3065 " (cutoff:3.500A) removed outlier: 5.220A pdb=" N GLU E3070 " --> pdb=" O ALA E3066 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N THR E3082 " --> pdb=" O GLN E3078 " (cutoff:3.500A) Processing helix chain 'E' and resid 3102 through 3114 removed outlier: 4.614A pdb=" N LEU E3106 " --> pdb=" O LEU E3102 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N SER E3107 " --> pdb=" O LEU E3103 " (cutoff:3.500A) removed outlier: 4.232A pdb=" N SER E3108 " --> pdb=" O PRO E3104 " (cutoff:3.500A) removed outlier: 4.770A pdb=" N LEU E3109 " --> pdb=" O MET E3105 " (cutoff:3.500A) Processing helix chain 'E' and resid 3124 through 3144 removed outlier: 4.299A pdb=" N GLN E3128 " --> pdb=" O LEU E3124 " (cutoff:3.500A) removed outlier: 4.005A pdb=" N SER E3137 " --> pdb=" O ARG E3133 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N LEU E3138 " --> pdb=" O ILE E3134 " (cutoff:3.500A) Processing helix chain 'E' and resid 3151 through 3164 removed outlier: 4.272A pdb=" N ALA E3155 " --> pdb=" O ARG E3151 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N LEU E3156 " --> pdb=" O GLN E3152 " (cutoff:3.500A) removed outlier: 4.043A pdb=" N PHE E3163 " --> pdb=" O CYS E3159 " (cutoff:3.500A) Processing helix chain 'E' and resid 3171 through 3183 removed outlier: 3.681A pdb=" N ASN E3180 " --> pdb=" O LEU E3176 " (cutoff:3.500A) removed outlier: 4.131A pdb=" N ILE E3181 " --> pdb=" O ASP E3177 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N TYR E3182 " --> pdb=" O LYS E3178 " (cutoff:3.500A) removed outlier: 4.760A pdb=" N SER E3183 " --> pdb=" O HIS E3179 " (cutoff:3.500A) Processing helix chain 'E' and resid 3613 through 3629 removed outlier: 4.225A pdb=" N ALA E3617 " --> pdb=" O PRO E3613 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N VAL E3618 " --> pdb=" O ARG E3614 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N LYS E3627 " --> pdb=" O GLN E3623 " (cutoff:3.500A) Processing helix chain 'E' and resid 3637 through 3647 removed outlier: 4.414A pdb=" N ILE E3642 " --> pdb=" O GLU E3638 " (cutoff:3.500A) removed outlier: 4.150A pdb=" N LYS E3647 " --> pdb=" O GLU E3643 " (cutoff:3.500A) Processing helix chain 'E' and resid 3663 through 3679 removed outlier: 3.653A pdb=" N LEU E3668 " --> pdb=" O PRO E3664 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ARG E3674 " --> pdb=" O LEU E3670 " (cutoff:3.500A) removed outlier: 3.650A pdb=" N LEU E3677 " --> pdb=" O SER E3673 " (cutoff:3.500A) removed outlier: 6.086A pdb=" N GLU E3679 " --> pdb=" O THR E3675 " (cutoff:3.500A) Processing helix chain 'E' and resid 3686 through 3700 removed outlier: 3.841A pdb=" N MET E3690 " --> pdb=" O ASP E3686 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N ALA E3691 " --> pdb=" O PHE E3687 " (cutoff:3.500A) removed outlier: 4.907A pdb=" N ASP E3694 " --> pdb=" O MET E3690 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N ILE E3695 " --> pdb=" O ALA E3691 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N MET E3696 " --> pdb=" O TYR E3692 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N ALA E3697 " --> pdb=" O ALA E3693 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N SER E3699 " --> pdb=" O ILE E3695 " (cutoff:3.500A) removed outlier: 4.810A pdb=" N CYS E3700 " --> pdb=" O MET E3696 " (cutoff:3.500A) Processing helix chain 'E' and resid 3714 through 3734 removed outlier: 4.361A pdb=" N LYS E3718 " --> pdb=" O SER E3714 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N GLU E3721 " --> pdb=" O GLU E3717 " (cutoff:3.500A) removed outlier: 4.897A pdb=" N LYS E3722 " --> pdb=" O LYS E3718 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N GLN E3723 " --> pdb=" O GLU E3719 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ALA E3730 " --> pdb=" O LEU E3726 " (cutoff:3.500A) removed outlier: 4.875A pdb=" N LEU E3732 " --> pdb=" O GLN E3728 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ASP E3734 " --> pdb=" O ALA E3730 " (cutoff:3.500A) Processing helix chain 'E' and resid 3736 through 3749 removed outlier: 3.755A pdb=" N MET E3740 " --> pdb=" O GLY E3736 " (cutoff:3.500A) removed outlier: 4.063A pdb=" N VAL E3741 " --> pdb=" O ALA E3737 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N LEU E3742 " --> pdb=" O ALA E3738 " (cutoff:3.500A) removed outlier: 3.973A pdb=" N THR E3744 " --> pdb=" O MET E3740 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ILE E3745 " --> pdb=" O VAL E3741 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N SER E3746 " --> pdb=" O LEU E3742 " (cutoff:3.500A) removed outlier: 4.235A pdb=" N SER E3748 " --> pdb=" O THR E3744 " (cutoff:3.500A) removed outlier: 4.860A pdb=" N LYS E3749 " --> pdb=" O ILE E3745 " (cutoff:3.500A) Processing helix chain 'E' and resid 3753 through 3768 removed outlier: 3.812A pdb=" N ALA E3758 " --> pdb=" O PRO E3754 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N THR E3759 " --> pdb=" O MET E3755 " (cutoff:3.500A) removed outlier: 4.757A pdb=" N LYS E3761 " --> pdb=" O ALA E3757 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N LEU E3762 " --> pdb=" O ALA E3758 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N LEU E3767 " --> pdb=" O GLY E3763 " (cutoff:3.500A) Processing helix chain 'E' and resid 3771 through 3785 removed outlier: 4.301A pdb=" N GLN E3775 " --> pdb=" O ASN E3771 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N GLN E3776 " --> pdb=" O SER E3772 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N LEU E3779 " --> pdb=" O GLN E3775 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N LYS E3783 " --> pdb=" O LEU E3779 " (cutoff:3.500A) Processing helix chain 'E' and resid 3787 through 3801 removed outlier: 4.774A pdb=" N PHE E3791 " --> pdb=" O ASP E3787 " (cutoff:3.500A) removed outlier: 4.745A pdb=" N SER E3800 " --> pdb=" O GLY E3796 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N CYS E3801 " --> pdb=" O LEU E3797 " (cutoff:3.500A) Processing helix chain 'E' and resid 3805 through 3819 removed outlier: 3.764A pdb=" N PHE E3809 " --> pdb=" O ASP E3805 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N GLU E3816 " --> pdb=" O GLN E3812 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N LEU E3818 " --> pdb=" O LYS E3814 " (cutoff:3.500A) Processing helix chain 'E' and resid 3829 through 3849 removed outlier: 5.734A pdb=" N ASP E3833 " --> pdb=" O LYS E3829 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ASP E3834 " --> pdb=" O VAL E3830 " (cutoff:3.500A) removed outlier: 6.951A pdb=" N GLU E3835 " --> pdb=" O LEU E3831 " (cutoff:3.500A) removed outlier: 6.308A pdb=" N PHE E3836 " --> pdb=" O GLN E3832 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N THR E3837 " --> pdb=" O ASP E3833 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ASP E3839 " --> pdb=" O GLU E3835 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE E3841 " --> pdb=" O THR E3837 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N PHE E3843 " --> pdb=" O ASP E3839 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LEU E3847 " --> pdb=" O PHE E3843 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N CYS E3848 " --> pdb=" O LEU E3844 " (cutoff:3.500A) Processing helix chain 'E' and resid 3852 through 3861 removed outlier: 4.209A pdb=" N ASN E3857 " --> pdb=" O SER E3853 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N LEU E3859 " --> pdb=" O PHE E3855 " (cutoff:3.500A) removed outlier: 4.217A pdb=" N ARG E3860 " --> pdb=" O GLN E3856 " (cutoff:3.500A) removed outlier: 4.246A pdb=" N THR E3861 " --> pdb=" O ASN E3857 " (cutoff:3.500A) Processing helix chain 'E' and resid 3870 through 3895 removed outlier: 3.560A pdb=" N TYR E3878 " --> pdb=" O SER E3874 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N LEU E3879 " --> pdb=" O THR E3875 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SER E3885 " --> pdb=" O ARG E3881 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N TYR E3893 " --> pdb=" O PHE E3889 " (cutoff:3.500A) removed outlier: 5.391A pdb=" N GLY E3895 " --> pdb=" O TRP E3891 " (cutoff:3.500A) Processing helix chain 'E' and resid 3900 through 3926 removed outlier: 3.682A pdb=" N ASN E3906 " --> pdb=" O GLN E3902 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N LYS E3909 " --> pdb=" O ARG E3905 " (cutoff:3.500A) removed outlier: 3.798A pdb=" N ALA E3910 " --> pdb=" O ASN E3906 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N VAL E3913 " --> pdb=" O LYS E3909 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N ALA E3914 " --> pdb=" O ALA E3910 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N TYR E3924 " --> pdb=" O THR E3920 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N ILE E3925 " --> pdb=" O LEU E3921 " (cutoff:3.500A) Processing helix chain 'E' and resid 3929 through 3940 removed outlier: 3.607A pdb=" N SER E3935 " --> pdb=" O GLY E3931 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N ALA E3937 " --> pdb=" O GLN E3933 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N SER E3939 " --> pdb=" O SER E3935 " (cutoff:3.500A) removed outlier: 5.507A pdb=" N ARG E3940 " --> pdb=" O LEU E3936 " (cutoff:3.500A) Processing helix chain 'E' and resid 3941 through 3961 removed outlier: 3.831A pdb=" N GLY E3947 " --> pdb=" O ASP E3943 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N HIS E3954 " --> pdb=" O HIS E3950 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N GLN E3956 " --> pdb=" O PHE E3952 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N MET E3957 " --> pdb=" O ALA E3953 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N SER E3960 " --> pdb=" O GLN E3956 " (cutoff:3.500A) removed outlier: 4.363A pdb=" N GLN E3961 " --> pdb=" O MET E3957 " (cutoff:3.500A) Processing helix chain 'E' and resid 3962 through 3989 removed outlier: 4.442A pdb=" N ILE E3966 " --> pdb=" O ASP E3962 " (cutoff:3.500A) removed outlier: 5.129A pdb=" N GLU E3967 " --> pdb=" O SER E3963 " (cutoff:3.500A) removed outlier: 5.284A pdb=" N LEU E3968 " --> pdb=" O SER E3964 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N LYS E3970 " --> pdb=" O ILE E3966 " (cutoff:3.500A) removed outlier: 4.479A pdb=" N GLU E3971 " --> pdb=" O GLU E3967 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N GLN E3976 " --> pdb=" O LEU E3972 " (cutoff:3.500A) removed outlier: 3.575A pdb=" N VAL E3980 " --> pdb=" O GLN E3976 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N VAL E3981 " --> pdb=" O LYS E3977 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N MET E3982 " --> pdb=" O ASP E3978 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N LEU E3987 " --> pdb=" O LEU E3983 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N GLU E3988 " --> pdb=" O LEU E3984 " (cutoff:3.500A) removed outlier: 5.829A pdb=" N GLY E3989 " --> pdb=" O SER E3985 " (cutoff:3.500A) Processing helix chain 'E' and resid 3994 through 4008 removed outlier: 3.605A pdb=" N LYS E3998 " --> pdb=" O GLY E3994 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N SER E4008 " --> pdb=" O LEU E4004 " (cutoff:3.500A) Processing helix chain 'E' and resid 4009 through 4028 removed outlier: 4.754A pdb=" N MET E4013 " --> pdb=" O ASN E4009 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N ILE E4014 " --> pdb=" O ASN E4010 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N PHE E4018 " --> pdb=" O ILE E4014 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N ASP E4019 " --> pdb=" O LEU E4015 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N PHE E4021 " --> pdb=" O PHE E4017 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N LYS E4023 " --> pdb=" O ASP E4019 " (cutoff:3.500A) removed outlier: 4.053A pdb=" N LEU E4024 " --> pdb=" O MET E4020 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N LYS E4025 " --> pdb=" O PHE E4021 " (cutoff:3.500A) removed outlier: 4.848A pdb=" N ASP E4026 " --> pdb=" O LEU E4022 " (cutoff:3.500A) Processing helix chain 'E' and resid 4030 through 4038 removed outlier: 3.555A pdb=" N GLU E4035 " --> pdb=" O ASP E4031 " (cutoff:3.500A) removed outlier: 5.036A pdb=" N ASP E4037 " --> pdb=" O PHE E4033 " (cutoff:3.500A) Proline residue: E4038 - end of helix Processing helix chain 'E' and resid 4045 through 4057 removed outlier: 3.721A pdb=" N PHE E4049 " --> pdb=" O SER E4045 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N ALA E4052 " --> pdb=" O ASP E4048 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N GLU E4054 " --> pdb=" O HIS E4050 " (cutoff:3.500A) Processing helix chain 'E' and resid 4060 through 4071 removed outlier: 3.759A pdb=" N GLU E4065 " --> pdb=" O GLN E4061 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N PHE E4066 " --> pdb=" O SER E4062 " (cutoff:3.500A) removed outlier: 5.896A pdb=" N CYS E4070 " --> pdb=" O PHE E4066 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N ALA E4071 " --> pdb=" O LEU E4067 " (cutoff:3.500A) Processing helix chain 'E' and resid 4081 through 4110 removed outlier: 4.647A pdb=" N VAL E4085 " --> pdb=" O TYR E4081 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LYS E4086 " --> pdb=" O GLU E4082 " (cutoff:3.500A) removed outlier: 4.443A pdb=" N GLU E4090 " --> pdb=" O LYS E4086 " (cutoff:3.500A) Proline residue: E4091 - end of helix removed outlier: 4.120A pdb=" N ASP E4094 " --> pdb=" O GLU E4090 " (cutoff:3.500A) removed outlier: 4.432A pdb=" N ILE E4095 " --> pdb=" O PRO E4091 " (cutoff:3.500A) removed outlier: 4.405A pdb=" N ASN E4098 " --> pdb=" O ASP E4094 " (cutoff:3.500A) removed outlier: 4.176A pdb=" N VAL E4099 " --> pdb=" O ILE E4095 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N SER E4107 " --> pdb=" O LEU E4103 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N HIS E4109 " --> pdb=" O ASN E4105 " (cutoff:3.500A) Processing helix chain 'E' and resid 4113 through 4124 removed outlier: 3.635A pdb=" N GLN E4117 " --> pdb=" O ASP E4113 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N THR E4118 " --> pdb=" O THR E4114 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N PHE E4119 " --> pdb=" O ARG E4115 " (cutoff:3.500A) removed outlier: 3.960A pdb=" N LEU E4122 " --> pdb=" O THR E4118 " (cutoff:3.500A) removed outlier: 4.530A pdb=" N ALA E4123 " --> pdb=" O PHE E4119 " (cutoff:3.500A) removed outlier: 4.296A pdb=" N GLU E4124 " --> pdb=" O LEU E4120 " (cutoff:3.500A) Processing helix chain 'E' and resid 4125 through 4135 removed outlier: 3.627A pdb=" N TYR E4129 " --> pdb=" O SER E4125 " (cutoff:3.500A) Proline residue: E4132 - end of helix removed outlier: 6.098A pdb=" N GLY E4135 " --> pdb=" O GLN E4131 " (cutoff:3.500A) Processing helix chain 'E' and resid 4154 through 4163 removed outlier: 3.503A pdb=" N THR E4159 " --> pdb=" O GLU E4155 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLN E4160 " --> pdb=" O SER E4156 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N TRP E4161 " --> pdb=" O SER E4157 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N GLU E4162 " --> pdb=" O ARG E4158 " (cutoff:3.500A) removed outlier: 5.396A pdb=" N LYS E4163 " --> pdb=" O THR E4159 " (cutoff:3.500A) Processing helix chain 'E' and resid 4164 through 4180 removed outlier: 3.520A pdb=" N PHE E4175 " --> pdb=" O ARG E4171 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N VAL E4178 " --> pdb=" O ILE E4174 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ASN E4179 " --> pdb=" O PHE E4175 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N GLU E4180 " --> pdb=" O ASP E4176 " (cutoff:3.500A) Processing helix chain 'E' and resid 4185 through 4207 removed outlier: 4.150A pdb=" N ASP E4196 " --> pdb=" O ASN E4192 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N PHE E4199 " --> pdb=" O GLU E4195 " (cutoff:3.500A) removed outlier: 3.873A pdb=" N ALA E4205 " --> pdb=" O MET E4201 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N GLN E4206 " --> pdb=" O GLN E4202 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N ILE E4207 " --> pdb=" O LEU E4203 " (cutoff:3.500A) Processing helix chain 'E' and resid 4487 through 4500 removed outlier: 4.216A pdb=" N LYS E4491 " --> pdb=" O ALA E4487 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N TYR E4495 " --> pdb=" O LYS E4491 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ARG E4498 " --> pdb=" O ASN E4494 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N PHE E4500 " --> pdb=" O PHE E4496 " (cutoff:3.500A) Processing helix chain 'E' and resid 4501 through 4521 removed outlier: 3.658A pdb=" N MET E4505 " --> pdb=" O TYR E4501 " (cutoff:3.500A) removed outlier: 4.580A pdb=" N LEU E4506 " --> pdb=" O ASN E4502 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N LEU E4508 " --> pdb=" O ARG E4504 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N ALA E4511 " --> pdb=" O ALA E4507 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N ALA E4513 " --> pdb=" O PHE E4509 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N ILE E4517 " --> pdb=" O ALA E4513 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N LEU E4519 " --> pdb=" O ASN E4515 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N PHE E4520 " --> pdb=" O PHE E4516 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N TYR E4521 " --> pdb=" O ILE E4517 " (cutoff:3.500A) Processing helix chain 'E' and resid 4569 through 4613 removed outlier: 3.615A pdb=" N ILE E4578 " --> pdb=" O ARG E4574 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N VAL E4582 " --> pdb=" O ILE E4578 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N ILE E4588 " --> pdb=" O SER E4584 " (cutoff:3.500A) removed outlier: 4.047A pdb=" N GLY E4590 " --> pdb=" O PHE E4586 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N TYR E4591 " --> pdb=" O CYS E4587 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N CYS E4593 " --> pdb=" O ILE E4589 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LEU E4594 " --> pdb=" O GLY E4590 " (cutoff:3.500A) removed outlier: 4.486A pdb=" N VAL E4596 " --> pdb=" O TYR E4592 " (cutoff:3.500A) Proline residue: E4597 - end of helix removed outlier: 3.700A pdb=" N GLU E4606 " --> pdb=" O LYS E4602 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N LYS E4610 " --> pdb=" O GLU E4606 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N GLU E4612 " --> pdb=" O ALA E4608 " (cutoff:3.500A) removed outlier: 4.323A pdb=" N PHE E4613 " --> pdb=" O ARG E4609 " (cutoff:3.500A) Processing helix chain 'E' and resid 4626 through 4639 removed outlier: 3.638A pdb=" N ASP E4632 " --> pdb=" O LYS E4628 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N ARG E4633 " --> pdb=" O GLY E4629 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N LEU E4634 " --> pdb=" O GLN E4630 " (cutoff:3.500A) removed outlier: 4.914A pdb=" N VAL E4635 " --> pdb=" O TRP E4631 " (cutoff:3.500A) removed outlier: 4.197A pdb=" N ILE E4636 " --> pdb=" O ASP E4632 " (cutoff:3.500A) removed outlier: 4.914A pdb=" N ASN E4637 " --> pdb=" O ARG E4633 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N THR E4638 " --> pdb=" O LEU E4634 " (cutoff:3.500A) removed outlier: 5.583A pdb=" N GLN E4639 " --> pdb=" O VAL E4635 " (cutoff:3.500A) Processing helix chain 'E' and resid 4649 through 4658 removed outlier: 3.788A pdb=" N VAL E4654 " --> pdb=" O VAL E4650 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N MET E4655 " --> pdb=" O LYS E4651 " (cutoff:3.500A) Processing helix chain 'E' and resid 4663 through 4672 removed outlier: 3.514A pdb=" N ILE E4667 " --> pdb=" O GLY E4663 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N SER E4668 " --> pdb=" O ARG E4664 " (cutoff:3.500A) Processing helix chain 'E' and resid 4703 through 4718 removed outlier: 3.778A pdb=" N GLN E4707 " --> pdb=" O ASP E4703 " (cutoff:3.500A) removed outlier: 4.331A pdb=" N THR E4716 " --> pdb=" O GLY E4712 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ASP E4717 " --> pdb=" O VAL E4713 " (cutoff:3.500A) removed outlier: 5.308A pdb=" N ASN E4718 " --> pdb=" O VAL E4714 " (cutoff:3.500A) Processing helix chain 'E' and resid 4719 through 4736 removed outlier: 3.768A pdb=" N LEU E4723 " --> pdb=" O SER E4719 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N MET E4727 " --> pdb=" O LEU E4723 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N SER E4730 " --> pdb=" O TYR E4726 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N LEU E4732 " --> pdb=" O THR E4728 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N HIS E4734 " --> pdb=" O SER E4730 " (cutoff:3.500A) removed outlier: 4.258A pdb=" N TYR E4735 " --> pdb=" O VAL E4731 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N ASN E4736 " --> pdb=" O LEU E4732 " (cutoff:3.500A) Processing helix chain 'E' and resid 4737 through 4751 removed outlier: 4.861A pdb=" N ALA E4741 " --> pdb=" O ASN E4737 " (cutoff:3.500A) removed outlier: 4.350A pdb=" N ALA E4742 " --> pdb=" O PHE E4738 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N HIS E4743 " --> pdb=" O PHE E4739 " (cutoff:3.500A) removed outlier: 4.689A pdb=" N LEU E4744 " --> pdb=" O PHE E4740 " (cutoff:3.500A) removed outlier: 5.488A pdb=" N LEU E4745 " --> pdb=" O ALA E4741 " (cutoff:3.500A) removed outlier: 5.355A pdb=" N ASP E4746 " --> pdb=" O ALA E4742 " (cutoff:3.500A) removed outlier: 5.161A pdb=" N ILE E4747 " --> pdb=" O HIS E4743 " (cutoff:3.500A) removed outlier: 4.631A pdb=" N ALA E4748 " --> pdb=" O LEU E4744 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N MET E4749 " --> pdb=" O LEU E4745 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N PHE E4751 " --> pdb=" O ILE E4747 " (cutoff:3.500A) Processing helix chain 'E' and resid 4752 through 4763 removed outlier: 4.449A pdb=" N ILE E4757 " --> pdb=" O THR E4753 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N VAL E4761 " --> pdb=" O ILE E4757 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N THR E4762 " --> pdb=" O LEU E4758 " (cutoff:3.500A) Processing helix chain 'E' and resid 4764 through 4790 removed outlier: 3.711A pdb=" N LEU E4768 " --> pdb=" O ASN E4764 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LEU E4770 " --> pdb=" O LYS E4766 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N VAL E4777 " --> pdb=" O GLY E4773 " (cutoff:3.500A) removed outlier: 3.699A pdb=" N TYR E4780 " --> pdb=" O ALA E4776 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N VAL E4785 " --> pdb=" O LEU E4781 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N ALA E4786 " --> pdb=" O TYR E4782 " (cutoff:3.500A) Processing helix chain 'E' and resid 4809 through 4824 removed outlier: 4.597A pdb=" N VAL E4822 " --> pdb=" O MET E4818 " (cutoff:3.500A) removed outlier: 4.654A pdb=" N ARG E4823 " --> pdb=" O TYR E4819 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N ALA E4824 " --> pdb=" O VAL E4820 " (cutoff:3.500A) Processing helix chain 'E' and resid 4828 through 4833 removed outlier: 3.892A pdb=" N ILE E4832 " --> pdb=" O ILE E4828 " (cutoff:3.500A) removed outlier: 6.311A pdb=" N GLU E4833 " --> pdb=" O GLY E4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4828 through 4833' Processing helix chain 'E' and resid 4840 through 4855 removed outlier: 4.152A pdb=" N PHE E4847 " --> pdb=" O TYR E4843 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N PHE E4851 " --> pdb=" O PHE E4847 " (cutoff:3.500A) Processing helix chain 'E' and resid 4859 through 4884 removed outlier: 3.656A pdb=" N ILE E4863 " --> pdb=" O LEU E4859 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N GLN E4864 " --> pdb=" O LEU E4860 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N LEU E4866 " --> pdb=" O ILE E4862 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ILE E4867 " --> pdb=" O ILE E4863 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N ALA E4870 " --> pdb=" O LEU E4866 " (cutoff:3.500A) removed outlier: 4.396A pdb=" N ASP E4876 " --> pdb=" O GLY E4872 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N GLN E4878 " --> pdb=" O LEU E4874 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N GLU E4879 " --> pdb=" O ARG E4875 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N LYS E4882 " --> pdb=" O GLN E4878 " (cutoff:3.500A) Processing helix chain 'E' and resid 4895 through 4900 removed outlier: 3.817A pdb=" N PHE E4899 " --> pdb=" O GLY E4895 " (cutoff:3.500A) Processing helix chain 'E' and resid 4904 through 4912 removed outlier: 4.201A pdb=" N THR E4908 " --> pdb=" O HIS E4904 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N HIS E4909 " --> pdb=" O GLY E4905 " (cutoff:3.500A) Processing helix chain 'E' and resid 4915 through 4930 removed outlier: 4.194A pdb=" N TYR E4919 " --> pdb=" O ASN E4915 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N LEU E4920 " --> pdb=" O LEU E4916 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N LEU E4923 " --> pdb=" O TYR E4919 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N ILE E4927 " --> pdb=" O LEU E4923 " (cutoff:3.500A) removed outlier: 3.955A pdb=" N ASN E4928 " --> pdb=" O MET E4924 " (cutoff:3.500A) removed outlier: 5.524A pdb=" N ASP E4930 " --> pdb=" O LEU E4926 " (cutoff:3.500A) Processing helix chain 'E' and resid 4935 through 4948 removed outlier: 3.578A pdb=" N SER E4939 " --> pdb=" O THR E4935 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N TYR E4940 " --> pdb=" O GLY E4936 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N TRP E4942 " --> pdb=" O GLU E4938 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N LYS E4943 " --> pdb=" O SER E4939 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLN E4946 " --> pdb=" O TRP E4942 " (cutoff:3.500A) Processing helix chain 'E' and resid 4958 through 4963 removed outlier: 6.138A pdb=" N GLN E4962 " --> pdb=" O CYS E4958 " (cutoff:3.500A) Processing helix chain 'E' and resid 398 through 403 removed outlier: 4.012A pdb=" N ASP E 401 " --> pdb=" O HIS E 398 " (cutoff:3.500A) removed outlier: 5.057A pdb=" N GLY E 402 " --> pdb=" O MET E 399 " (cutoff:3.500A) removed outlier: 4.610A pdb=" N LEU E 403 " --> pdb=" O ASP E 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 398 through 403' Processing helix chain 'E' and resid 915 through 920 removed outlier: 3.893A pdb=" N LEU E 918 " --> pdb=" O HIS E 915 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N VAL E 919 " --> pdb=" O PRO E 916 " (cutoff:3.500A) removed outlier: 5.621A pdb=" N GLU E 920 " --> pdb=" O CYS E 917 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 915 through 920' Processing helix chain 'G' and resid 61 through 66 removed outlier: 4.734A pdb=" N CYS G 65 " --> pdb=" O ASP G 61 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N THR G 66 " --> pdb=" O LEU G 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 61 through 66' Processing helix chain 'G' and resid 74 through 84 removed outlier: 3.526A pdb=" N ALA G 83 " --> pdb=" O GLN G 79 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ASN G 84 " --> pdb=" O GLU G 80 " (cutoff:3.500A) Processing helix chain 'G' and resid 265 through 271 removed outlier: 4.727A pdb=" N VAL G 269 " --> pdb=" O GLY G 265 " (cutoff:3.500A) removed outlier: 5.680A pdb=" N ALA G 271 " --> pdb=" O VAL G 267 " (cutoff:3.500A) Processing helix chain 'G' and resid 323 through 328 removed outlier: 3.877A pdb=" N ALA G 328 " --> pdb=" O VAL G 324 " (cutoff:3.500A) Processing helix chain 'G' and resid 409 through 438 removed outlier: 3.619A pdb=" N ARG G 420 " --> pdb=" O ALA G 416 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N LEU G 425 " --> pdb=" O SER G 421 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N ARG G 428 " --> pdb=" O PHE G 424 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N LEU G 436 " --> pdb=" O GLY G 432 " (cutoff:3.500A) removed outlier: 4.134A pdb=" N LYS G 438 " --> pdb=" O ASP G 434 " (cutoff:3.500A) Processing helix chain 'G' and resid 448 through 464 removed outlier: 4.796A pdb=" N VAL G 452 " --> pdb=" O PRO G 448 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N LEU G 454 " --> pdb=" O GLU G 450 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N SER G 455 " --> pdb=" O SER G 451 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N GLN G 457 " --> pdb=" O SER G 453 " (cutoff:3.500A) Processing helix chain 'G' and resid 471 through 493 removed outlier: 4.269A pdb=" N GLN G 476 " --> pdb=" O HIS G 472 " (cutoff:3.500A) removed outlier: 4.345A pdb=" N ASN G 477 " --> pdb=" O GLU G 473 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N GLU G 492 " --> pdb=" O LEU G 488 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N GLY G 493 " --> pdb=" O PHE G 489 " (cutoff:3.500A) Processing helix chain 'G' and resid 494 through 507 removed outlier: 4.090A pdb=" N CYS G 501 " --> pdb=" O LEU G 497 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N HIS G 506 " --> pdb=" O ILE G 502 " (cutoff:3.500A) removed outlier: 5.381A pdb=" N VAL G 507 " --> pdb=" O ASP G 503 " (cutoff:3.500A) Processing helix chain 'G' and resid 519 through 542 removed outlier: 3.501A pdb=" N GLY G 523 " --> pdb=" O GLY G 519 " (cutoff:3.500A) removed outlier: 4.961A pdb=" N GLU G 524 " --> pdb=" O ARG G 520 " (cutoff:3.500A) removed outlier: 5.522A pdb=" N SER G 525 " --> pdb=" O GLU G 521 " (cutoff:3.500A) removed outlier: 6.168A pdb=" N TRP G 526 " --> pdb=" O ALA G 522 " (cutoff:3.500A) removed outlier: 6.279A pdb=" N LYS G 527 " --> pdb=" O GLY G 523 " (cutoff:3.500A) removed outlier: 5.780A pdb=" N SER G 528 " --> pdb=" O GLU G 524 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N SER G 532 " --> pdb=" O SER G 528 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N GLU G 535 " --> pdb=" O ASN G 531 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N LEU G 536 " --> pdb=" O SER G 532 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N ILE G 541 " --> pdb=" O LEU G 537 " (cutoff:3.500A) removed outlier: 3.783A pdb=" N ARG G 542 " --> pdb=" O ALA G 538 " (cutoff:3.500A) Processing helix chain 'G' and resid 544 through 553 removed outlier: 3.630A pdb=" N GLN G 550 " --> pdb=" O LYS G 546 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N SER G 552 " --> pdb=" O CYS G 548 " (cutoff:3.500A) removed outlier: 5.226A pdb=" N GLY G 553 " --> pdb=" O ALA G 549 " (cutoff:3.500A) Processing helix chain 'G' and resid 554 through 563 removed outlier: 4.393A pdb=" N GLU G 563 " --> pdb=" O ILE G 559 " (cutoff:3.500A) Processing helix chain 'G' and resid 564 through 582 removed outlier: 6.398A pdb=" N SER G 568 " --> pdb=" O ARG G 564 " (cutoff:3.500A) removed outlier: 7.167A pdb=" N SER G 569 " --> pdb=" O LEU G 565 " (cutoff:3.500A) removed outlier: 6.948A pdb=" N GLY G 570 " --> pdb=" O GLU G 566 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N VAL G 580 " --> pdb=" O HIS G 576 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N GLU G 581 " --> pdb=" O CYS G 577 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N SER G 582 " --> pdb=" O VAL G 578 " (cutoff:3.500A) Processing helix chain 'G' and resid 583 through 589 removed outlier: 3.834A pdb=" N ASN G 587 " --> pdb=" O PRO G 583 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ILE G 588 " --> pdb=" O GLU G 584 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N ILE G 589 " --> pdb=" O ALA G 585 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 583 through 589' Processing helix chain 'G' and resid 590 through 605 removed outlier: 3.545A pdb=" N LEU G 601 " --> pdb=" O ILE G 597 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N GLY G 605 " --> pdb=" O LEU G 601 " (cutoff:3.500A) Processing helix chain 'G' and resid 607 through 620 removed outlier: 3.871A pdb=" N LEU G 611 " --> pdb=" O ASN G 607 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N SER G 616 " --> pdb=" O ASP G 612 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N CYS G 618 " --> pdb=" O LEU G 614 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N VAL G 619 " --> pdb=" O CYS G 615 " (cutoff:3.500A) removed outlier: 4.502A pdb=" N CYS G 620 " --> pdb=" O SER G 616 " (cutoff:3.500A) Processing helix chain 'G' and resid 625 through 640 removed outlier: 3.864A pdb=" N HIS G 630 " --> pdb=" O ARG G 626 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N LEU G 631 " --> pdb=" O SER G 627 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N LEU G 637 " --> pdb=" O CYS G 633 " (cutoff:3.500A) Proline residue: G 638 - end of helix Processing helix chain 'G' and resid 821 through 828 removed outlier: 4.105A pdb=" N ALA G 825 " --> pdb=" O PRO G 821 " (cutoff:3.500A) removed outlier: 4.198A pdb=" N VAL G 826 " --> pdb=" O CYS G 822 " (cutoff:3.500A) removed outlier: 4.903A pdb=" N LEU G 827 " --> pdb=" O TYR G 823 " (cutoff:3.500A) Proline residue: G 828 - end of helix No H-bonds generated for 'chain 'G' and resid 821 through 828' Processing helix chain 'G' and resid 876 through 901 removed outlier: 4.306A pdb=" N LEU G 892 " --> pdb=" O ASN G 888 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N LYS G 897 " --> pdb=" O TRP G 893 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N GLU G 899 " --> pdb=" O MET G 895 " (cutoff:3.500A) removed outlier: 4.825A pdb=" N LEU G 900 " --> pdb=" O ASN G 896 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N GLY G 901 " --> pdb=" O LYS G 897 " (cutoff:3.500A) Processing helix chain 'G' and resid 929 through 946 removed outlier: 4.001A pdb=" N MET G 935 " --> pdb=" O TYR G 931 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N GLU G 938 " --> pdb=" O GLN G 934 " (cutoff:3.500A) removed outlier: 4.034A pdb=" N LEU G 944 " --> pdb=" O LEU G 940 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ALA G 945 " --> pdb=" O LYS G 941 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N LEU G 946 " --> pdb=" O THR G 942 " (cutoff:3.500A) Processing helix chain 'G' and resid 989 through 1012 removed outlier: 3.880A pdb=" N GLU G 993 " --> pdb=" O THR G 989 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N ASP G 997 " --> pdb=" O GLU G 993 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N LYS G 998 " --> pdb=" O ALA G 994 " (cutoff:3.500A) Processing helix chain 'G' and resid 1042 through 1061 removed outlier: 4.660A pdb=" N ASN G1046 " --> pdb=" O THR G1042 " (cutoff:3.500A) Processing helix chain 'G' and resid 1226 through 1231 removed outlier: 3.952A pdb=" N GLY G1231 " --> pdb=" O PHE G1227 " (cutoff:3.500A) Processing helix chain 'G' and resid 1571 through 1577 removed outlier: 4.499A pdb=" N HIS G1575 " --> pdb=" O PHE G1571 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N LYS G1576 " --> pdb=" O LYS G1572 " (cutoff:3.500A) removed outlier: 5.798A pdb=" N ASN G1577 " --> pdb=" O SER G1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1571 through 1577' Processing helix chain 'G' and resid 1640 through 1648 removed outlier: 4.444A pdb=" N LEU G1644 " --> pdb=" O ASP G1640 " (cutoff:3.500A) removed outlier: 4.933A pdb=" N THR G1645 " --> pdb=" O ILE G1641 " (cutoff:3.500A) removed outlier: 5.255A pdb=" N GLU G1646 " --> pdb=" O LEU G1642 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N GLN G1647 " --> pdb=" O GLU G1643 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N GLU G1648 " --> pdb=" O LEU G1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1640 through 1648' Processing helix chain 'G' and resid 1649 through 1666 removed outlier: 3.841A pdb=" N HIS G1654 " --> pdb=" O LEU G1650 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SER G1662 " --> pdb=" O LEU G1658 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N CYS G1665 " --> pdb=" O TYR G1661 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N ALA G1666 " --> pdb=" O SER G1662 " (cutoff:3.500A) Processing helix chain 'G' and resid 1669 through 1680 removed outlier: 4.608A pdb=" N HIS G1674 " --> pdb=" O HIS G1670 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N SER G1678 " --> pdb=" O HIS G1674 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N HIS G1679 " --> pdb=" O ALA G1675 " (cutoff:3.500A) Processing helix chain 'G' and resid 1681 through 1691 removed outlier: 4.315A pdb=" N LEU G1685 " --> pdb=" O ASP G1681 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N GLU G1690 " --> pdb=" O LEU G1686 " (cutoff:3.500A) Processing helix chain 'G' and resid 1695 through 1710 removed outlier: 3.758A pdb=" N ALA G1700 " --> pdb=" O GLY G1696 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N TYR G1702 " --> pdb=" O LEU G1698 " (cutoff:3.500A) Processing helix chain 'G' and resid 1711 through 1723 removed outlier: 4.374A pdb=" N THR G1716 " --> pdb=" O SER G1712 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA G1717 " --> pdb=" O SER G1713 " (cutoff:3.500A) removed outlier: 4.254A pdb=" N MET G1721 " --> pdb=" O ALA G1717 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N ASN G1722 " --> pdb=" O ARG G1718 " (cutoff:3.500A) removed outlier: 6.251A pdb=" N ASN G1723 " --> pdb=" O LEU G1719 " (cutoff:3.500A) Processing helix chain 'G' and resid 1730 through 1736 removed outlier: 4.344A pdb=" N ILE G1736 " --> pdb=" O GLU G1732 " (cutoff:3.500A) Processing helix chain 'G' and resid 1771 through 1776 Processing helix chain 'G' and resid 1783 through 1803 removed outlier: 3.709A pdb=" N LEU G1787 " --> pdb=" O PRO G1783 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N ALA G1789 " --> pdb=" O ASP G1785 " (cutoff:3.500A) removed outlier: 4.117A pdb=" N ILE G1792 " --> pdb=" O LYS G1788 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N GLU G1801 " --> pdb=" O GLU G1797 " (cutoff:3.500A) Processing helix chain 'G' and resid 1813 through 1832 removed outlier: 3.615A pdb=" N LEU G1817 " --> pdb=" O THR G1813 " (cutoff:3.500A) Proline residue: G1820 - end of helix removed outlier: 4.351A pdb=" N LEU G1824 " --> pdb=" O PRO G1820 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N MET G1831 " --> pdb=" O THR G1827 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N GLY G1832 " --> pdb=" O LEU G1828 " (cutoff:3.500A) Processing helix chain 'G' and resid 1836 through 1847 removed outlier: 4.197A pdb=" N HIS G1841 " --> pdb=" O GLU G1837 " (cutoff:3.500A) removed outlier: 4.139A pdb=" N GLN G1844 " --> pdb=" O LYS G1840 " (cutoff:3.500A) removed outlier: 4.258A pdb=" N LEU G1845 " --> pdb=" O HIS G1841 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N ILE G1846 " --> pdb=" O ILE G1842 " (cutoff:3.500A) Processing helix chain 'G' and resid 1901 through 1952 removed outlier: 4.222A pdb=" N GLN G1906 " --> pdb=" O PRO G1902 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU G1909 " --> pdb=" O LEU G1905 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N TYR G1913 " --> pdb=" O LEU G1909 " (cutoff:3.500A) removed outlier: 3.683A pdb=" N LEU G1914 " --> pdb=" O LEU G1910 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N GLN G1918 " --> pdb=" O LEU G1914 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N VAL G1919 " --> pdb=" O CYS G1915 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ARG G1920 " --> pdb=" O ASP G1916 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N GLU G1924 " --> pdb=" O ARG G1920 " (cutoff:3.500A) removed outlier: 4.808A pdb=" N ASP G1932 " --> pdb=" O ALA G1928 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N VAL G1934 " --> pdb=" O SER G1930 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N LEU G1937 " --> pdb=" O PHE G1933 " (cutoff:3.500A) removed outlier: 4.608A pdb=" N ASP G1939 " --> pdb=" O ALA G1935 " (cutoff:3.500A) removed outlier: 5.216A pdb=" N ASN G1940 " --> pdb=" O LYS G1936 " (cutoff:3.500A) removed outlier: 3.745A pdb=" N GLN G1941 " --> pdb=" O LEU G1937 " (cutoff:3.500A) removed outlier: 4.347A pdb=" N ARG G1942 " --> pdb=" O GLN G1938 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N GLN G1950 " --> pdb=" O ASN G1946 " (cutoff:3.500A) Processing helix chain 'G' and resid 1991 through 1998 removed outlier: 3.525A pdb=" N GLN G1996 " --> pdb=" O GLU G1992 " (cutoff:3.500A) removed outlier: 4.703A pdb=" N LEU G1998 " --> pdb=" O ARG G1994 " (cutoff:3.500A) Processing helix chain 'G' and resid 1999 through 2013 removed outlier: 3.843A pdb=" N ILE G2010 " --> pdb=" O THR G2006 " (cutoff:3.500A) removed outlier: 4.581A pdb=" N GLU G2011 " --> pdb=" O HIS G2007 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N LEU G2012 " --> pdb=" O CYS G2008 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N ASP G2013 " --> pdb=" O GLY G2009 " (cutoff:3.500A) Processing helix chain 'G' and resid 2024 through 2038 removed outlier: 5.237A pdb=" N GLY G2028 " --> pdb=" O LEU G2024 " (cutoff:3.500A) removed outlier: 4.598A pdb=" N ARG G2029 " --> pdb=" O THR G2025 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N LEU G2030 " --> pdb=" O ILE G2026 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LEU G2031 " --> pdb=" O ARG G2027 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N GLU G2035 " --> pdb=" O LEU G2031 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N THR G2038 " --> pdb=" O VAL G2034 " (cutoff:3.500A) Processing helix chain 'G' and resid 2058 through 2074 removed outlier: 3.857A pdb=" N LEU G2062 " --> pdb=" O THR G2058 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N SER G2064 " --> pdb=" O GLN G2060 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N VAL G2068 " --> pdb=" O SER G2064 " (cutoff:3.500A) removed outlier: 3.820A pdb=" N GLU G2073 " --> pdb=" O ARG G2069 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N SER G2074 " --> pdb=" O TRP G2070 " (cutoff:3.500A) Processing helix chain 'G' and resid 2078 through 2095 removed outlier: 4.018A pdb=" N VAL G2082 " --> pdb=" O ASP G2078 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N LEU G2088 " --> pdb=" O ALA G2084 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N GLN G2092 " --> pdb=" O LEU G2088 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N TYR G2093 " --> pdb=" O LEU G2089 " (cutoff:3.500A) removed outlier: 4.173A pdb=" N GLY G2095 " --> pdb=" O ARG G2091 " (cutoff:3.500A) Processing helix chain 'G' and resid 2096 through 2107 Proline residue: G2104 - end of helix removed outlier: 5.988A pdb=" N TYR G2107 " --> pdb=" O LEU G2103 " (cutoff:3.500A) Processing helix chain 'G' and resid 2110 through 2132 removed outlier: 3.805A pdb=" N VAL G2114 " --> pdb=" O ASN G2110 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N GLU G2115 " --> pdb=" O GLY G2111 " (cutoff:3.500A) removed outlier: 5.821A pdb=" N ASP G2116 " --> pdb=" O VAL G2112 " (cutoff:3.500A) removed outlier: 4.019A pdb=" N THR G2117 " --> pdb=" O SER G2113 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N ILE G2118 " --> pdb=" O VAL G2114 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N ASN G2119 " --> pdb=" O GLU G2115 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N GLN G2126 " --> pdb=" O ALA G2122 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N ILE G2127 " --> pdb=" O SER G2123 " (cutoff:3.500A) removed outlier: 4.833A pdb=" N SER G2132 " --> pdb=" O ARG G2128 " (cutoff:3.500A) Processing helix chain 'G' and resid 2140 through 2153 removed outlier: 3.878A pdb=" N ASN G2153 " --> pdb=" O ASP G2149 " (cutoff:3.500A) Processing helix chain 'G' and resid 2154 through 2160 removed outlier: 4.208A pdb=" N GLN G2158 " --> pdb=" O LYS G2154 " (cutoff:3.500A) removed outlier: 5.844A pdb=" N HIS G2159 " --> pdb=" O VAL G2155 " (cutoff:3.500A) Proline residue: G2160 - end of helix No H-bonds generated for 'chain 'G' and resid 2154 through 2160' Processing helix chain 'G' and resid 2161 through 2167 removed outlier: 4.071A pdb=" N GLY G2167 " --> pdb=" O MET G2163 " (cutoff:3.500A) Processing helix chain 'G' and resid 2168 through 2181 removed outlier: 3.974A pdb=" N VAL G2172 " --> pdb=" O MET G2168 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N GLY G2181 " --> pdb=" O VAL G2177 " (cutoff:3.500A) Processing helix chain 'G' and resid 2191 through 2209 removed outlier: 4.040A pdb=" N ALA G2195 " --> pdb=" O PRO G2191 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N ASN G2196 " --> pdb=" O LYS G2192 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N ARG G2199 " --> pdb=" O ALA G2195 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N PHE G2200 " --> pdb=" O ASN G2196 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N LEU G2201 " --> pdb=" O CYS G2197 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N ARG G2206 " --> pdb=" O CYS G2202 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N ILE G2207 " --> pdb=" O TYR G2203 " (cutoff:3.500A) removed outlier: 4.923A pdb=" N SER G2208 " --> pdb=" O PHE G2204 " (cutoff:3.500A) removed outlier: 5.266A pdb=" N ARG G2209 " --> pdb=" O CYS G2205 " (cutoff:3.500A) Processing helix chain 'G' and resid 2210 through 2217 removed outlier: 4.252A pdb=" N ASP G2217 " --> pdb=" O LYS G2213 " (cutoff:3.500A) Processing helix chain 'G' and resid 2218 through 2225 removed outlier: 4.620A pdb=" N GLU G2224 " --> pdb=" O SER G2220 " (cutoff:3.500A) removed outlier: 4.442A pdb=" N ASN G2225 " --> pdb=" O TYR G2221 " (cutoff:3.500A) Processing helix chain 'G' and resid 2239 through 2249 removed outlier: 4.146A pdb=" N VAL G2243 " --> pdb=" O THR G2239 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N ALA G2244 " --> pdb=" O PRO G2240 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N VAL G2248 " --> pdb=" O ALA G2244 " (cutoff:3.500A) Processing helix chain 'G' and resid 2251 through 2258 removed outlier: 3.769A pdb=" N LEU G2258 " --> pdb=" O LEU G2254 " (cutoff:3.500A) Processing helix chain 'G' and resid 2259 through 2274 removed outlier: 3.676A pdb=" N LEU G2263 " --> pdb=" O ARG G2259 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N LYS G2265 " --> pdb=" O PRO G2261 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N VAL G2266 " --> pdb=" O ASP G2262 " (cutoff:3.500A) removed outlier: 4.428A pdb=" N GLY G2274 " --> pdb=" O LEU G2270 " (cutoff:3.500A) Processing helix chain 'G' and resid 2295 through 2308 removed outlier: 3.583A pdb=" N TYR G2299 " --> pdb=" O GLU G2295 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N ASP G2301 " --> pdb=" O GLU G2297 " (cutoff:3.500A) removed outlier: 4.463A pdb=" N PHE G2305 " --> pdb=" O ASP G2301 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N ALA G2306 " --> pdb=" O PHE G2302 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N VAL G2307 " --> pdb=" O LEU G2303 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N PHE G2308 " --> pdb=" O ARG G2304 " (cutoff:3.500A) Processing helix chain 'G' and resid 2314 through 2329 removed outlier: 4.640A pdb=" N ARG G2328 " --> pdb=" O LEU G2324 " (cutoff:3.500A) Proline residue: G2329 - end of helix Processing helix chain 'G' and resid 2343 through 2354 removed outlier: 4.537A pdb=" N MET G2348 " --> pdb=" O LEU G2344 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N GLU G2349 " --> pdb=" O LEU G2345 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N ILE G2352 " --> pdb=" O MET G2348 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N LYS G2353 " --> pdb=" O GLU G2349 " (cutoff:3.500A) removed outlier: 4.234A pdb=" N ILE G2354 " --> pdb=" O GLU G2350 " (cutoff:3.500A) Processing helix chain 'G' and resid 2387 through 2404 removed outlier: 3.690A pdb=" N THR G2391 " --> pdb=" O ASN G2387 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N ALA G2394 " --> pdb=" O MET G2390 " (cutoff:3.500A) removed outlier: 4.718A pdb=" N ALA G2404 " --> pdb=" O LEU G2400 " (cutoff:3.500A) Processing helix chain 'G' and resid 2408 through 2413 removed outlier: 3.535A pdb=" N ALA G2412 " --> pdb=" O HIS G2408 " (cutoff:3.500A) Processing helix chain 'G' and resid 2414 through 2428 removed outlier: 5.303A pdb=" N ILE G2418 " --> pdb=" O LYS G2414 " (cutoff:3.500A) removed outlier: 6.582A pdb=" N ARG G2419 " --> pdb=" O GLY G2415 " (cutoff:3.500A) removed outlier: 4.717A pdb=" N ILE G2420 " --> pdb=" O GLU G2416 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N ARG G2421 " --> pdb=" O ALA G2417 " (cutoff:3.500A) Processing helix chain 'G' and resid 2432 through 2437 Processing helix chain 'G' and resid 2462 through 2477 removed outlier: 4.354A pdb=" N LYS G2466 " --> pdb=" O CYS G2462 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N LEU G2471 " --> pdb=" O ALA G2467 " (cutoff:3.500A) Processing helix chain 'G' and resid 2481 through 2489 removed outlier: 3.885A pdb=" N LEU G2485 " --> pdb=" O VAL G2481 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N LEU G2486 " --> pdb=" O GLN G2482 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N LEU G2488 " --> pdb=" O PHE G2484 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N LEU G2489 " --> pdb=" O LEU G2485 " (cutoff:3.500A) Processing helix chain 'G' and resid 2492 through 2500 removed outlier: 3.634A pdb=" N ASP G2496 " --> pdb=" O GLY G2492 " (cutoff:3.500A) removed outlier: 4.223A pdb=" N LEU G2497 " --> pdb=" O PHE G2493 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N ARG G2498 " --> pdb=" O LEU G2494 " (cutoff:3.500A) Processing helix chain 'G' and resid 2511 through 2528 removed outlier: 4.549A pdb=" N ALA G2516 " --> pdb=" O ASP G2512 " (cutoff:3.500A) removed outlier: 5.049A pdb=" N LEU G2517 " --> pdb=" O MET G2513 " (cutoff:3.500A) removed outlier: 4.627A pdb=" N ASN G2518 " --> pdb=" O ALA G2514 " (cutoff:3.500A) removed outlier: 5.352A pdb=" N CYS G2522 " --> pdb=" O ASN G2518 " (cutoff:3.500A) removed outlier: 4.446A pdb=" N THR G2523 " --> pdb=" O ARG G2519 " (cutoff:3.500A) removed outlier: 4.959A pdb=" N VAL G2525 " --> pdb=" O LEU G2521 " (cutoff:3.500A) Proline residue: G2527 - end of helix Processing helix chain 'G' and resid 2537 through 2553 removed outlier: 3.669A pdb=" N HIS G2541 " --> pdb=" O ALA G2537 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N ILE G2546 " --> pdb=" O HIS G2542 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N HIS G2551 " --> pdb=" O ASP G2547 " (cutoff:3.500A) removed outlier: 4.061A pdb=" N THR G2552 " --> pdb=" O SER G2548 " (cutoff:3.500A) Processing helix chain 'G' and resid 2559 through 2576 removed outlier: 4.827A pdb=" N THR G2563 " --> pdb=" O GLY G2559 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N LYS G2564 " --> pdb=" O CYS G2560 " (cutoff:3.500A) removed outlier: 4.055A pdb=" N ALA G2565 " --> pdb=" O SER G2561 " (cutoff:3.500A) removed outlier: 3.796A pdb=" N VAL G2572 " --> pdb=" O ASP G2568 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N LEU G2574 " --> pdb=" O ILE G2570 " (cutoff:3.500A) removed outlier: 3.907A pdb=" N LEU G2575 " --> pdb=" O GLU G2571 " (cutoff:3.500A) removed outlier: 4.739A pdb=" N SER G2576 " --> pdb=" O VAL G2572 " (cutoff:3.500A) Processing helix chain 'G' and resid 2583 through 2601 removed outlier: 4.234A pdb=" N ARG G2591 " --> pdb=" O GLN G2587 " (cutoff:3.500A) removed outlier: 3.792A pdb=" N ARG G2592 " --> pdb=" O HIS G2588 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LEU G2593 " --> pdb=" O LEU G2589 " (cutoff:3.500A) removed outlier: 6.192A pdb=" N VAL G2594 " --> pdb=" O LEU G2590 " (cutoff:3.500A) removed outlier: 4.155A pdb=" N PHE G2595 " --> pdb=" O ARG G2591 " (cutoff:3.500A) removed outlier: 4.185A pdb=" N ASP G2596 " --> pdb=" O ARG G2592 " (cutoff:3.500A) Proline residue: G2598 - end of helix removed outlier: 4.125A pdb=" N ASN G2601 " --> pdb=" O VAL G2597 " (cutoff:3.500A) Processing helix chain 'G' and resid 2605 through 2627 removed outlier: 3.696A pdb=" N LYS G2609 " --> pdb=" O LYS G2605 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N TYR G2615 " --> pdb=" O LEU G2611 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N ARG G2617 " --> pdb=" O ASN G2613 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N CYS G2618 " --> pdb=" O HIS G2614 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N LYS G2620 " --> pdb=" O GLU G2616 " (cutoff:3.500A) removed outlier: 5.033A pdb=" N TYR G2621 " --> pdb=" O ARG G2617 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N TYR G2622 " --> pdb=" O CYS G2618 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N CYS G2623 " --> pdb=" O TRP G2619 " (cutoff:3.500A) Proline residue: G2625 - end of helix Processing helix chain 'G' and resid 2635 through 2653 removed outlier: 3.822A pdb=" N ASP G2651 " --> pdb=" O TRP G2647 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N ALA G2652 " --> pdb=" O GLY G2648 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LEU G2653 " --> pdb=" O ILE G2649 " (cutoff:3.500A) Processing helix chain 'G' and resid 2658 through 2678 removed outlier: 4.680A pdb=" N LEU G2662 " --> pdb=" O TYR G2658 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N PHE G2663 " --> pdb=" O GLU G2659 " (cutoff:3.500A) removed outlier: 4.498A pdb=" N LEU G2665 " --> pdb=" O GLU G2661 " (cutoff:3.500A) removed outlier: 4.207A pdb=" N ALA G2666 " --> pdb=" O LEU G2662 " (cutoff:3.500A) Proline residue: G2668 - end of helix removed outlier: 4.130A pdb=" N SER G2671 " --> pdb=" O LEU G2667 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N ALA G2672 " --> pdb=" O PRO G2668 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N ALA G2676 " --> pdb=" O ALA G2672 " (cutoff:3.500A) removed outlier: 4.883A pdb=" N LEU G2677 " --> pdb=" O VAL G2673 " (cutoff:3.500A) Proline residue: G2678 - end of helix Processing helix chain 'G' and resid 2715 through 2739 removed outlier: 3.608A pdb=" N GLU G2719 " --> pdb=" O PRO G2715 " (cutoff:3.500A) removed outlier: 4.793A pdb=" N TYR G2720 " --> pdb=" O GLU G2716 " (cutoff:3.500A) removed outlier: 5.133A pdb=" N PHE G2721 " --> pdb=" O LYS G2717 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N LYS G2737 " --> pdb=" O TRP G2733 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N ALA G2739 " --> pdb=" O MET G2735 " (cutoff:3.500A) Processing helix chain 'G' and resid 2765 through 2774 removed outlier: 3.888A pdb=" N LYS G2769 " --> pdb=" O SER G2765 " (cutoff:3.500A) removed outlier: 5.652A pdb=" N GLU G2770 " --> pdb=" O GLU G2766 " (cutoff:3.500A) removed outlier: 5.200A pdb=" N ILE G2771 " --> pdb=" O LYS G2767 " (cutoff:3.500A) removed outlier: 4.662A pdb=" N TYR G2772 " --> pdb=" O GLU G2768 " (cutoff:3.500A) Processing helix chain 'G' and resid 2775 through 2786 removed outlier: 4.035A pdb=" N SER G2779 " --> pdb=" O PRO G2775 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N LEU G2780 " --> pdb=" O ILE G2776 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N LYS G2781 " --> pdb=" O LYS G2777 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N THR G2782 " --> pdb=" O GLU G2778 " (cutoff:3.500A) removed outlier: 4.231A pdb=" N MET G2783 " --> pdb=" O SER G2779 " (cutoff:3.500A) removed outlier: 4.515A pdb=" N ALA G2785 " --> pdb=" O LYS G2781 " (cutoff:3.500A) removed outlier: 4.746A pdb=" N TRP G2786 " --> pdb=" O THR G2782 " (cutoff:3.500A) Processing helix chain 'G' and resid 2836 through 2865 removed outlier: 5.338A pdb=" N ALA G2840 " --> pdb=" O ARG G2836 " (cutoff:3.500A) removed outlier: 4.957A pdb=" N MET G2841 " --> pdb=" O ASP G2837 " (cutoff:3.500A) removed outlier: 3.907A pdb=" N LYS G2855 " --> pdb=" O ASN G2851 " (cutoff:3.500A) removed outlier: 4.303A pdb=" N LEU G2861 " --> pdb=" O LYS G2857 " (cutoff:3.500A) removed outlier: 5.223A pdb=" N GLU G2862 " --> pdb=" O LYS G2858 " (cutoff:3.500A) removed outlier: 5.533A pdb=" N SER G2863 " --> pdb=" O LEU G2859 " (cutoff:3.500A) removed outlier: 5.008A pdb=" N LYS G2864 " --> pdb=" O GLU G2860 " (cutoff:3.500A) removed outlier: 6.070A pdb=" N GLY G2865 " --> pdb=" O LEU G2861 " (cutoff:3.500A) Processing helix chain 'G' and resid 2879 through 2901 removed outlier: 4.543A pdb=" N LYS G2883 " --> pdb=" O THR G2879 " (cutoff:3.500A) removed outlier: 5.673A pdb=" N LYS G2885 " --> pdb=" O LYS G2881 " (cutoff:3.500A) removed outlier: 5.149A pdb=" N ASP G2886 " --> pdb=" O GLU G2882 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N GLU G2888 " --> pdb=" O ALA G2884 " (cutoff:3.500A) removed outlier: 4.290A pdb=" N LYS G2889 " --> pdb=" O LYS G2885 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ALA G2890 " --> pdb=" O ASP G2886 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N GLN G2891 " --> pdb=" O ARG G2887 " (cutoff:3.500A) removed outlier: 4.590A pdb=" N ASP G2892 " --> pdb=" O GLU G2888 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N ILE G2893 " --> pdb=" O LYS G2889 " (cutoff:3.500A) removed outlier: 4.811A pdb=" N LEU G2894 " --> pdb=" O ALA G2890 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N LEU G2897 " --> pdb=" O ILE G2893 " (cutoff:3.500A) removed outlier: 3.522A pdb=" N GLN G2898 " --> pdb=" O LEU G2894 " (cutoff:3.500A) Processing helix chain 'G' and resid 2982 through 3004 Proline residue: G2990 - end of helix removed outlier: 4.043A pdb=" N GLU G3001 " --> pdb=" O ALA G2997 " (cutoff:3.500A) removed outlier: 4.803A pdb=" N LYS G3002 " --> pdb=" O SER G2998 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N GLU G3003 " --> pdb=" O ASN G2999 " (cutoff:3.500A) removed outlier: 5.501A pdb=" N MET G3004 " --> pdb=" O LYS G3000 " (cutoff:3.500A) Processing helix chain 'G' and resid 3010 through 3025 removed outlier: 3.684A pdb=" N LEU G3015 " --> pdb=" O LYS G3011 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N PHE G3023 " --> pdb=" O ARG G3019 " (cutoff:3.500A) Processing helix chain 'G' and resid 3034 through 3052 removed outlier: 4.123A pdb=" N GLN G3039 " --> pdb=" O HIS G3035 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N THR G3040 " --> pdb=" O ILE G3036 " (cutoff:3.500A) removed outlier: 3.785A pdb=" N ASP G3042 " --> pdb=" O GLY G3038 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N ARG G3044 " --> pdb=" O THR G3040 " (cutoff:3.500A) removed outlier: 4.152A pdb=" N THR G3045 " --> pdb=" O LEU G3041 " (cutoff:3.500A) removed outlier: 4.122A pdb=" N LEU G3051 " --> pdb=" O MET G3047 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N GLU G3052 " --> pdb=" O LYS G3048 " (cutoff:3.500A) Processing helix chain 'G' and resid 3061 through 3082 removed outlier: 5.054A pdb=" N ALA G3065 " --> pdb=" O PHE G3061 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N ALA G3066 " --> pdb=" O LEU G3062 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N GLU G3067 " --> pdb=" O ASP G3063 " (cutoff:3.500A) removed outlier: 5.401A pdb=" N ASP G3068 " --> pdb=" O ASN G3064 " (cutoff:3.500A) removed outlier: 5.742A pdb=" N LEU G3069 " --> pdb=" O ALA G3065 " (cutoff:3.500A) removed outlier: 5.220A pdb=" N GLU G3070 " --> pdb=" O ALA G3066 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N THR G3082 " --> pdb=" O GLN G3078 " (cutoff:3.500A) Processing helix chain 'G' and resid 3102 through 3114 removed outlier: 4.614A pdb=" N LEU G3106 " --> pdb=" O LEU G3102 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N SER G3107 " --> pdb=" O LEU G3103 " (cutoff:3.500A) removed outlier: 4.232A pdb=" N SER G3108 " --> pdb=" O PRO G3104 " (cutoff:3.500A) removed outlier: 4.770A pdb=" N LEU G3109 " --> pdb=" O MET G3105 " (cutoff:3.500A) Processing helix chain 'G' and resid 3124 through 3144 removed outlier: 4.299A pdb=" N GLN G3128 " --> pdb=" O LEU G3124 " (cutoff:3.500A) removed outlier: 4.005A pdb=" N SER G3137 " --> pdb=" O ARG G3133 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N LEU G3138 " --> pdb=" O ILE G3134 " (cutoff:3.500A) Processing helix chain 'G' and resid 3151 through 3164 removed outlier: 4.273A pdb=" N ALA G3155 " --> pdb=" O ARG G3151 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N LEU G3156 " --> pdb=" O GLN G3152 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N PHE G3163 " --> pdb=" O CYS G3159 " (cutoff:3.500A) Processing helix chain 'G' and resid 3171 through 3183 removed outlier: 3.680A pdb=" N ASN G3180 " --> pdb=" O LEU G3176 " (cutoff:3.500A) removed outlier: 4.132A pdb=" N ILE G3181 " --> pdb=" O ASP G3177 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N TYR G3182 " --> pdb=" O LYS G3178 " (cutoff:3.500A) removed outlier: 4.759A pdb=" N SER G3183 " --> pdb=" O HIS G3179 " (cutoff:3.500A) Processing helix chain 'G' and resid 3613 through 3629 removed outlier: 4.226A pdb=" N ALA G3617 " --> pdb=" O PRO G3613 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N VAL G3618 " --> pdb=" O ARG G3614 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N LYS G3627 " --> pdb=" O GLN G3623 " (cutoff:3.500A) Processing helix chain 'G' and resid 3637 through 3647 removed outlier: 4.415A pdb=" N ILE G3642 " --> pdb=" O GLU G3638 " (cutoff:3.500A) removed outlier: 4.148A pdb=" N LYS G3647 " --> pdb=" O GLU G3643 " (cutoff:3.500A) Processing helix chain 'G' and resid 3663 through 3679 removed outlier: 3.653A pdb=" N LEU G3668 " --> pdb=" O PRO G3664 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ARG G3674 " --> pdb=" O LEU G3670 " (cutoff:3.500A) removed outlier: 3.650A pdb=" N LEU G3677 " --> pdb=" O SER G3673 " (cutoff:3.500A) removed outlier: 6.085A pdb=" N GLU G3679 " --> pdb=" O THR G3675 " (cutoff:3.500A) Processing helix chain 'G' and resid 3686 through 3700 removed outlier: 3.840A pdb=" N MET G3690 " --> pdb=" O ASP G3686 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N ALA G3691 " --> pdb=" O PHE G3687 " (cutoff:3.500A) removed outlier: 4.906A pdb=" N ASP G3694 " --> pdb=" O MET G3690 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N ILE G3695 " --> pdb=" O ALA G3691 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N MET G3696 " --> pdb=" O TYR G3692 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N ALA G3697 " --> pdb=" O ALA G3693 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N SER G3699 " --> pdb=" O ILE G3695 " (cutoff:3.500A) removed outlier: 4.811A pdb=" N CYS G3700 " --> pdb=" O MET G3696 " (cutoff:3.500A) Processing helix chain 'G' and resid 3714 through 3734 removed outlier: 4.362A pdb=" N LYS G3718 " --> pdb=" O SER G3714 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N GLU G3721 " --> pdb=" O GLU G3717 " (cutoff:3.500A) removed outlier: 4.897A pdb=" N LYS G3722 " --> pdb=" O LYS G3718 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N GLN G3723 " --> pdb=" O GLU G3719 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ALA G3730 " --> pdb=" O LEU G3726 " (cutoff:3.500A) removed outlier: 4.875A pdb=" N LEU G3732 " --> pdb=" O GLN G3728 " (cutoff:3.500A) removed outlier: 3.695A pdb=" N ASP G3734 " --> pdb=" O ALA G3730 " (cutoff:3.500A) Processing helix chain 'G' and resid 3736 through 3749 removed outlier: 3.755A pdb=" N MET G3740 " --> pdb=" O GLY G3736 " (cutoff:3.500A) removed outlier: 4.063A pdb=" N VAL G3741 " --> pdb=" O ALA G3737 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N LEU G3742 " --> pdb=" O ALA G3738 " (cutoff:3.500A) removed outlier: 3.973A pdb=" N THR G3744 " --> pdb=" O MET G3740 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N ILE G3745 " --> pdb=" O VAL G3741 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N SER G3746 " --> pdb=" O LEU G3742 " (cutoff:3.500A) removed outlier: 4.235A pdb=" N SER G3748 " --> pdb=" O THR G3744 " (cutoff:3.500A) removed outlier: 4.861A pdb=" N LYS G3749 " --> pdb=" O ILE G3745 " (cutoff:3.500A) Processing helix chain 'G' and resid 3753 through 3768 removed outlier: 3.811A pdb=" N ALA G3758 " --> pdb=" O PRO G3754 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N THR G3759 " --> pdb=" O MET G3755 " (cutoff:3.500A) removed outlier: 4.758A pdb=" N LYS G3761 " --> pdb=" O ALA G3757 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N LEU G3762 " --> pdb=" O ALA G3758 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N LEU G3767 " --> pdb=" O GLY G3763 " (cutoff:3.500A) Processing helix chain 'G' and resid 3771 through 3785 removed outlier: 4.302A pdb=" N GLN G3775 " --> pdb=" O ASN G3771 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N GLN G3776 " --> pdb=" O SER G3772 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N LEU G3779 " --> pdb=" O GLN G3775 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N LYS G3783 " --> pdb=" O LEU G3779 " (cutoff:3.500A) Processing helix chain 'G' and resid 3787 through 3801 removed outlier: 4.774A pdb=" N PHE G3791 " --> pdb=" O ASP G3787 " (cutoff:3.500A) removed outlier: 4.745A pdb=" N SER G3800 " --> pdb=" O GLY G3796 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N CYS G3801 " --> pdb=" O LEU G3797 " (cutoff:3.500A) Processing helix chain 'G' and resid 3805 through 3819 removed outlier: 3.764A pdb=" N PHE G3809 " --> pdb=" O ASP G3805 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N GLU G3816 " --> pdb=" O GLN G3812 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N LEU G3818 " --> pdb=" O LYS G3814 " (cutoff:3.500A) Processing helix chain 'G' and resid 3829 through 3849 removed outlier: 5.734A pdb=" N ASP G3833 " --> pdb=" O LYS G3829 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ASP G3834 " --> pdb=" O VAL G3830 " (cutoff:3.500A) removed outlier: 6.951A pdb=" N GLU G3835 " --> pdb=" O LEU G3831 " (cutoff:3.500A) removed outlier: 6.307A pdb=" N PHE G3836 " --> pdb=" O GLN G3832 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N THR G3837 " --> pdb=" O ASP G3833 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ASP G3839 " --> pdb=" O GLU G3835 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE G3841 " --> pdb=" O THR G3837 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N PHE G3843 " --> pdb=" O ASP G3839 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LEU G3847 " --> pdb=" O PHE G3843 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N CYS G3848 " --> pdb=" O LEU G3844 " (cutoff:3.500A) Processing helix chain 'G' and resid 3852 through 3861 removed outlier: 4.209A pdb=" N ASN G3857 " --> pdb=" O SER G3853 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N LEU G3859 " --> pdb=" O PHE G3855 " (cutoff:3.500A) removed outlier: 4.217A pdb=" N ARG G3860 " --> pdb=" O GLN G3856 " (cutoff:3.500A) removed outlier: 4.246A pdb=" N THR G3861 " --> pdb=" O ASN G3857 " (cutoff:3.500A) Processing helix chain 'G' and resid 3870 through 3895 removed outlier: 3.560A pdb=" N TYR G3878 " --> pdb=" O SER G3874 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N LEU G3879 " --> pdb=" O THR G3875 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SER G3885 " --> pdb=" O ARG G3881 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N TYR G3893 " --> pdb=" O PHE G3889 " (cutoff:3.500A) removed outlier: 5.391A pdb=" N GLY G3895 " --> pdb=" O TRP G3891 " (cutoff:3.500A) Processing helix chain 'G' and resid 3900 through 3926 removed outlier: 3.682A pdb=" N ASN G3906 " --> pdb=" O GLN G3902 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N LYS G3909 " --> pdb=" O ARG G3905 " (cutoff:3.500A) removed outlier: 3.798A pdb=" N ALA G3910 " --> pdb=" O ASN G3906 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N VAL G3913 " --> pdb=" O LYS G3909 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N ALA G3914 " --> pdb=" O ALA G3910 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N TYR G3924 " --> pdb=" O THR G3920 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N ILE G3925 " --> pdb=" O LEU G3921 " (cutoff:3.500A) Processing helix chain 'G' and resid 3929 through 3940 removed outlier: 3.607A pdb=" N SER G3935 " --> pdb=" O GLY G3931 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N ALA G3937 " --> pdb=" O GLN G3933 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N SER G3939 " --> pdb=" O SER G3935 " (cutoff:3.500A) removed outlier: 5.507A pdb=" N ARG G3940 " --> pdb=" O LEU G3936 " (cutoff:3.500A) Processing helix chain 'G' and resid 3941 through 3961 removed outlier: 3.831A pdb=" N GLY G3947 " --> pdb=" O ASP G3943 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N HIS G3954 " --> pdb=" O HIS G3950 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N GLN G3956 " --> pdb=" O PHE G3952 " (cutoff:3.500A) removed outlier: 4.533A pdb=" N MET G3957 " --> pdb=" O ALA G3953 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N SER G3960 " --> pdb=" O GLN G3956 " (cutoff:3.500A) removed outlier: 4.364A pdb=" N GLN G3961 " --> pdb=" O MET G3957 " (cutoff:3.500A) Processing helix chain 'G' and resid 3962 through 3989 removed outlier: 4.441A pdb=" N ILE G3966 " --> pdb=" O ASP G3962 " (cutoff:3.500A) removed outlier: 5.129A pdb=" N GLU G3967 " --> pdb=" O SER G3963 " (cutoff:3.500A) removed outlier: 5.284A pdb=" N LEU G3968 " --> pdb=" O SER G3964 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N LYS G3970 " --> pdb=" O ILE G3966 " (cutoff:3.500A) removed outlier: 4.479A pdb=" N GLU G3971 " --> pdb=" O GLU G3967 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N GLN G3976 " --> pdb=" O LEU G3972 " (cutoff:3.500A) removed outlier: 3.575A pdb=" N VAL G3980 " --> pdb=" O GLN G3976 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N VAL G3981 " --> pdb=" O LYS G3977 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N MET G3982 " --> pdb=" O ASP G3978 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N LEU G3987 " --> pdb=" O LEU G3983 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N GLU G3988 " --> pdb=" O LEU G3984 " (cutoff:3.500A) removed outlier: 5.828A pdb=" N GLY G3989 " --> pdb=" O SER G3985 " (cutoff:3.500A) Processing helix chain 'G' and resid 3994 through 4008 removed outlier: 3.606A pdb=" N LYS G3998 " --> pdb=" O GLY G3994 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N SER G4008 " --> pdb=" O LEU G4004 " (cutoff:3.500A) Processing helix chain 'G' and resid 4009 through 4028 removed outlier: 4.753A pdb=" N MET G4013 " --> pdb=" O ASN G4009 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N ILE G4014 " --> pdb=" O ASN G4010 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N PHE G4018 " --> pdb=" O ILE G4014 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N ASP G4019 " --> pdb=" O LEU G4015 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N PHE G4021 " --> pdb=" O PHE G4017 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N LYS G4023 " --> pdb=" O ASP G4019 " (cutoff:3.500A) removed outlier: 4.053A pdb=" N LEU G4024 " --> pdb=" O MET G4020 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N LYS G4025 " --> pdb=" O PHE G4021 " (cutoff:3.500A) removed outlier: 4.848A pdb=" N ASP G4026 " --> pdb=" O LEU G4022 " (cutoff:3.500A) Processing helix chain 'G' and resid 4030 through 4038 removed outlier: 3.555A pdb=" N GLU G4035 " --> pdb=" O ASP G4031 " (cutoff:3.500A) removed outlier: 5.036A pdb=" N ASP G4037 " --> pdb=" O PHE G4033 " (cutoff:3.500A) Proline residue: G4038 - end of helix Processing helix chain 'G' and resid 4045 through 4057 removed outlier: 3.721A pdb=" N PHE G4049 " --> pdb=" O SER G4045 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ALA G4052 " --> pdb=" O ASP G4048 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N GLU G4054 " --> pdb=" O HIS G4050 " (cutoff:3.500A) Processing helix chain 'G' and resid 4060 through 4071 removed outlier: 3.759A pdb=" N GLU G4065 " --> pdb=" O GLN G4061 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N PHE G4066 " --> pdb=" O SER G4062 " (cutoff:3.500A) removed outlier: 5.896A pdb=" N CYS G4070 " --> pdb=" O PHE G4066 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N ALA G4071 " --> pdb=" O LEU G4067 " (cutoff:3.500A) Processing helix chain 'G' and resid 4081 through 4110 removed outlier: 4.647A pdb=" N VAL G4085 " --> pdb=" O TYR G4081 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LYS G4086 " --> pdb=" O GLU G4082 " (cutoff:3.500A) removed outlier: 4.442A pdb=" N GLU G4090 " --> pdb=" O LYS G4086 " (cutoff:3.500A) Proline residue: G4091 - end of helix removed outlier: 4.121A pdb=" N ASP G4094 " --> pdb=" O GLU G4090 " (cutoff:3.500A) removed outlier: 4.432A pdb=" N ILE G4095 " --> pdb=" O PRO G4091 " (cutoff:3.500A) removed outlier: 4.405A pdb=" N ASN G4098 " --> pdb=" O ASP G4094 " (cutoff:3.500A) removed outlier: 4.176A pdb=" N VAL G4099 " --> pdb=" O ILE G4095 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N SER G4107 " --> pdb=" O LEU G4103 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N HIS G4109 " --> pdb=" O ASN G4105 " (cutoff:3.500A) Processing helix chain 'G' and resid 4113 through 4124 removed outlier: 3.635A pdb=" N GLN G4117 " --> pdb=" O ASP G4113 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N THR G4118 " --> pdb=" O THR G4114 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N PHE G4119 " --> pdb=" O ARG G4115 " (cutoff:3.500A) removed outlier: 3.960A pdb=" N LEU G4122 " --> pdb=" O THR G4118 " (cutoff:3.500A) removed outlier: 4.530A pdb=" N ALA G4123 " --> pdb=" O PHE G4119 " (cutoff:3.500A) removed outlier: 4.296A pdb=" N GLU G4124 " --> pdb=" O LEU G4120 " (cutoff:3.500A) Processing helix chain 'G' and resid 4125 through 4135 removed outlier: 3.626A pdb=" N TYR G4129 " --> pdb=" O SER G4125 " (cutoff:3.500A) Proline residue: G4132 - end of helix removed outlier: 6.098A pdb=" N GLY G4135 " --> pdb=" O GLN G4131 " (cutoff:3.500A) Processing helix chain 'G' and resid 4154 through 4163 removed outlier: 3.503A pdb=" N THR G4159 " --> pdb=" O GLU G4155 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N GLN G4160 " --> pdb=" O SER G4156 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N TRP G4161 " --> pdb=" O SER G4157 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N GLU G4162 " --> pdb=" O ARG G4158 " (cutoff:3.500A) removed outlier: 5.396A pdb=" N LYS G4163 " --> pdb=" O THR G4159 " (cutoff:3.500A) Processing helix chain 'G' and resid 4164 through 4180 removed outlier: 3.520A pdb=" N PHE G4175 " --> pdb=" O ARG G4171 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N VAL G4178 " --> pdb=" O ILE G4174 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N ASN G4179 " --> pdb=" O PHE G4175 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N GLU G4180 " --> pdb=" O ASP G4176 " (cutoff:3.500A) Processing helix chain 'G' and resid 4185 through 4207 removed outlier: 4.150A pdb=" N ASP G4196 " --> pdb=" O ASN G4192 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N PHE G4199 " --> pdb=" O GLU G4195 " (cutoff:3.500A) removed outlier: 3.873A pdb=" N ALA G4205 " --> pdb=" O MET G4201 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N GLN G4206 " --> pdb=" O GLN G4202 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N ILE G4207 " --> pdb=" O LEU G4203 " (cutoff:3.500A) Processing helix chain 'G' and resid 4487 through 4500 removed outlier: 4.216A pdb=" N LYS G4491 " --> pdb=" O ALA G4487 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N TYR G4495 " --> pdb=" O LYS G4491 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N ARG G4498 " --> pdb=" O ASN G4494 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N PHE G4500 " --> pdb=" O PHE G4496 " (cutoff:3.500A) Processing helix chain 'G' and resid 4501 through 4521 removed outlier: 3.658A pdb=" N MET G4505 " --> pdb=" O TYR G4501 " (cutoff:3.500A) removed outlier: 4.580A pdb=" N LEU G4506 " --> pdb=" O ASN G4502 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N LEU G4508 " --> pdb=" O ARG G4504 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N ALA G4511 " --> pdb=" O ALA G4507 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N ALA G4513 " --> pdb=" O PHE G4509 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N ILE G4517 " --> pdb=" O ALA G4513 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N LEU G4519 " --> pdb=" O ASN G4515 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N PHE G4520 " --> pdb=" O PHE G4516 " (cutoff:3.500A) removed outlier: 4.941A pdb=" N TYR G4521 " --> pdb=" O ILE G4517 " (cutoff:3.500A) Processing helix chain 'G' and resid 4569 through 4613 removed outlier: 3.615A pdb=" N ILE G4578 " --> pdb=" O ARG G4574 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N VAL G4582 " --> pdb=" O ILE G4578 " (cutoff:3.500A) removed outlier: 4.127A pdb=" N ILE G4588 " --> pdb=" O SER G4584 " (cutoff:3.500A) removed outlier: 4.047A pdb=" N GLY G4590 " --> pdb=" O PHE G4586 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N TYR G4591 " --> pdb=" O CYS G4587 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N CYS G4593 " --> pdb=" O ILE G4589 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N LEU G4594 " --> pdb=" O GLY G4590 " (cutoff:3.500A) removed outlier: 4.487A pdb=" N VAL G4596 " --> pdb=" O TYR G4592 " (cutoff:3.500A) Proline residue: G4597 - end of helix removed outlier: 3.700A pdb=" N GLU G4606 " --> pdb=" O LYS G4602 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N LYS G4610 " --> pdb=" O GLU G4606 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N GLU G4612 " --> pdb=" O ALA G4608 " (cutoff:3.500A) removed outlier: 4.323A pdb=" N PHE G4613 " --> pdb=" O ARG G4609 " (cutoff:3.500A) Processing helix chain 'G' and resid 4626 through 4639 removed outlier: 3.638A pdb=" N ASP G4632 " --> pdb=" O LYS G4628 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N ARG G4633 " --> pdb=" O GLY G4629 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N LEU G4634 " --> pdb=" O GLN G4630 " (cutoff:3.500A) removed outlier: 4.914A pdb=" N VAL G4635 " --> pdb=" O TRP G4631 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N ILE G4636 " --> pdb=" O ASP G4632 " (cutoff:3.500A) removed outlier: 4.914A pdb=" N ASN G4637 " --> pdb=" O ARG G4633 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N THR G4638 " --> pdb=" O LEU G4634 " (cutoff:3.500A) removed outlier: 5.583A pdb=" N GLN G4639 " --> pdb=" O VAL G4635 " (cutoff:3.500A) Processing helix chain 'G' and resid 4649 through 4658 removed outlier: 3.788A pdb=" N VAL G4654 " --> pdb=" O VAL G4650 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N MET G4655 " --> pdb=" O LYS G4651 " (cutoff:3.500A) Processing helix chain 'G' and resid 4663 through 4672 removed outlier: 3.514A pdb=" N ILE G4667 " --> pdb=" O GLY G4663 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N SER G4668 " --> pdb=" O ARG G4664 " (cutoff:3.500A) Processing helix chain 'G' and resid 4703 through 4718 removed outlier: 3.778A pdb=" N GLN G4707 " --> pdb=" O ASP G4703 " (cutoff:3.500A) removed outlier: 4.330A pdb=" N THR G4716 " --> pdb=" O GLY G4712 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ASP G4717 " --> pdb=" O VAL G4713 " (cutoff:3.500A) removed outlier: 5.307A pdb=" N ASN G4718 " --> pdb=" O VAL G4714 " (cutoff:3.500A) Processing helix chain 'G' and resid 4719 through 4736 removed outlier: 3.768A pdb=" N LEU G4723 " --> pdb=" O SER G4719 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N MET G4727 " --> pdb=" O LEU G4723 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N SER G4730 " --> pdb=" O TYR G4726 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N LEU G4732 " --> pdb=" O THR G4728 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N HIS G4734 " --> pdb=" O SER G4730 " (cutoff:3.500A) removed outlier: 4.258A pdb=" N TYR G4735 " --> pdb=" O VAL G4731 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N ASN G4736 " --> pdb=" O LEU G4732 " (cutoff:3.500A) Processing helix chain 'G' and resid 4737 through 4751 removed outlier: 4.861A pdb=" N ALA G4741 " --> pdb=" O ASN G4737 " (cutoff:3.500A) removed outlier: 4.350A pdb=" N ALA G4742 " --> pdb=" O PHE G4738 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N HIS G4743 " --> pdb=" O PHE G4739 " (cutoff:3.500A) removed outlier: 4.689A pdb=" N LEU G4744 " --> pdb=" O PHE G4740 " (cutoff:3.500A) removed outlier: 5.488A pdb=" N LEU G4745 " --> pdb=" O ALA G4741 " (cutoff:3.500A) removed outlier: 5.354A pdb=" N ASP G4746 " --> pdb=" O ALA G4742 " (cutoff:3.500A) removed outlier: 5.161A pdb=" N ILE G4747 " --> pdb=" O HIS G4743 " (cutoff:3.500A) removed outlier: 4.631A pdb=" N ALA G4748 " --> pdb=" O LEU G4744 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N MET G4749 " --> pdb=" O LEU G4745 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N PHE G4751 " --> pdb=" O ILE G4747 " (cutoff:3.500A) Processing helix chain 'G' and resid 4752 through 4763 removed outlier: 4.450A pdb=" N ILE G4757 " --> pdb=" O THR G4753 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N VAL G4761 " --> pdb=" O ILE G4757 " (cutoff:3.500A) removed outlier: 4.597A pdb=" N THR G4762 " --> pdb=" O LEU G4758 " (cutoff:3.500A) Processing helix chain 'G' and resid 4764 through 4790 removed outlier: 3.711A pdb=" N LEU G4768 " --> pdb=" O ASN G4764 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LEU G4770 " --> pdb=" O LYS G4766 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N VAL G4777 " --> pdb=" O GLY G4773 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N TYR G4780 " --> pdb=" O ALA G4776 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N VAL G4785 " --> pdb=" O LEU G4781 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N ALA G4786 " --> pdb=" O TYR G4782 " (cutoff:3.500A) Processing helix chain 'G' and resid 4809 through 4824 removed outlier: 4.597A pdb=" N VAL G4822 " --> pdb=" O MET G4818 " (cutoff:3.500A) removed outlier: 4.667A pdb=" N ARG G4823 " --> pdb=" O TYR G4819 " (cutoff:3.500A) removed outlier: 3.501A pdb=" N ALA G4824 " --> pdb=" O VAL G4820 " (cutoff:3.500A) Processing helix chain 'G' and resid 4828 through 4833 removed outlier: 3.891A pdb=" N ILE G4832 " --> pdb=" O ILE G4828 " (cutoff:3.500A) removed outlier: 6.311A pdb=" N GLU G4833 " --> pdb=" O GLY G4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4828 through 4833' Processing helix chain 'G' and resid 4840 through 4855 removed outlier: 4.153A pdb=" N PHE G4847 " --> pdb=" O TYR G4843 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N PHE G4851 " --> pdb=" O PHE G4847 " (cutoff:3.500A) Processing helix chain 'G' and resid 4859 through 4884 removed outlier: 3.656A pdb=" N ILE G4863 " --> pdb=" O LEU G4859 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N GLN G4864 " --> pdb=" O LEU G4860 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N LEU G4866 " --> pdb=" O ILE G4862 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ILE G4867 " --> pdb=" O ILE G4863 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N ALA G4870 " --> pdb=" O LEU G4866 " (cutoff:3.500A) removed outlier: 4.396A pdb=" N ASP G4876 " --> pdb=" O GLY G4872 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N GLN G4878 " --> pdb=" O LEU G4874 " (cutoff:3.500A) removed outlier: 3.960A pdb=" N GLU G4879 " --> pdb=" O ARG G4875 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N LYS G4882 " --> pdb=" O GLN G4878 " (cutoff:3.500A) Processing helix chain 'G' and resid 4895 through 4900 removed outlier: 3.817A pdb=" N PHE G4899 " --> pdb=" O GLY G4895 " (cutoff:3.500A) Processing helix chain 'G' and resid 4904 through 4912 removed outlier: 4.201A pdb=" N THR G4908 " --> pdb=" O HIS G4904 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N HIS G4909 " --> pdb=" O GLY G4905 " (cutoff:3.500A) Processing helix chain 'G' and resid 4915 through 4930 removed outlier: 4.195A pdb=" N TYR G4919 " --> pdb=" O ASN G4915 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N LEU G4920 " --> pdb=" O LEU G4916 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N LEU G4923 " --> pdb=" O TYR G4919 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N ILE G4927 " --> pdb=" O LEU G4923 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N ASN G4928 " --> pdb=" O MET G4924 " (cutoff:3.500A) removed outlier: 5.524A pdb=" N ASP G4930 " --> pdb=" O LEU G4926 " (cutoff:3.500A) Processing helix chain 'G' and resid 4935 through 4948 removed outlier: 3.579A pdb=" N SER G4939 " --> pdb=" O THR G4935 " (cutoff:3.500A) removed outlier: 3.644A pdb=" N TYR G4940 " --> pdb=" O GLY G4936 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N TRP G4942 " --> pdb=" O GLU G4938 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N LYS G4943 " --> pdb=" O SER G4939 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLN G4946 " --> pdb=" O TRP G4942 " (cutoff:3.500A) Processing helix chain 'G' and resid 4958 through 4963 removed outlier: 6.137A pdb=" N GLN G4962 " --> pdb=" O CYS G4958 " (cutoff:3.500A) Processing helix chain 'G' and resid 398 through 403 removed outlier: 4.012A pdb=" N ASP G 401 " --> pdb=" O HIS G 398 " (cutoff:3.500A) removed outlier: 5.057A pdb=" N GLY G 402 " --> pdb=" O MET G 399 " (cutoff:3.500A) removed outlier: 4.610A pdb=" N LEU G 403 " --> pdb=" O ASP G 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 398 through 403' Processing helix chain 'G' and resid 915 through 920 removed outlier: 3.894A pdb=" N LEU G 918 " --> pdb=" O HIS G 915 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N VAL G 919 " --> pdb=" O PRO G 916 " (cutoff:3.500A) removed outlier: 5.620A pdb=" N GLU G 920 " --> pdb=" O CYS G 917 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 915 through 920' Processing helix chain 'B' and resid 38 through 43 removed outlier: 5.785A pdb=" N ARG B 42 " --> pdb=" O SER B 38 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N ASN B 43 " --> pdb=" O SER B 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 38 through 43' Processing helix chain 'B' and resid 56 through 67 removed outlier: 3.886A pdb=" N MET B 66 " --> pdb=" O GLY B 62 " (cutoff:3.500A) removed outlier: 5.378A pdb=" N SER B 67 " --> pdb=" O ALA B 63 " (cutoff:3.500A) Processing helix chain 'B' and resid 77 through 82 removed outlier: 4.306A pdb=" N TYR B 82 " --> pdb=" O PRO B 78 " (cutoff:3.500A) Processing helix chain 'D' and resid 38 through 43 removed outlier: 5.785A pdb=" N ARG D 42 " --> pdb=" O SER D 38 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N ASN D 43 " --> pdb=" O SER D 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 38 through 43' Processing helix chain 'D' and resid 56 through 67 removed outlier: 3.886A pdb=" N MET D 66 " --> pdb=" O GLY D 62 " (cutoff:3.500A) removed outlier: 5.378A pdb=" N SER D 67 " --> pdb=" O ALA D 63 " (cutoff:3.500A) Processing helix chain 'D' and resid 77 through 82 removed outlier: 4.306A pdb=" N TYR D 82 " --> pdb=" O PRO D 78 " (cutoff:3.500A) Processing helix chain 'F' and resid 38 through 43 removed outlier: 5.786A pdb=" N ARG F 42 " --> pdb=" O SER F 38 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N ASN F 43 " --> pdb=" O SER F 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 38 through 43' Processing helix chain 'F' and resid 56 through 67 removed outlier: 3.886A pdb=" N MET F 66 " --> pdb=" O GLY F 62 " (cutoff:3.500A) removed outlier: 5.378A pdb=" N SER F 67 " --> pdb=" O ALA F 63 " (cutoff:3.500A) Processing helix chain 'F' and resid 77 through 82 removed outlier: 4.305A pdb=" N TYR F 82 " --> pdb=" O PRO F 78 " (cutoff:3.500A) Processing helix chain 'H' and resid 38 through 43 removed outlier: 5.786A pdb=" N ARG H 42 " --> pdb=" O SER H 38 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N ASN H 43 " --> pdb=" O SER H 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 38 through 43' Processing helix chain 'H' and resid 56 through 67 removed outlier: 3.886A pdb=" N MET H 66 " --> pdb=" O GLY H 62 " (cutoff:3.500A) removed outlier: 5.378A pdb=" N SER H 67 " --> pdb=" O ALA H 63 " (cutoff:3.500A) Processing helix chain 'H' and resid 77 through 82 removed outlier: 4.305A pdb=" N TYR H 82 " --> pdb=" O PRO H 78 " (cutoff:3.500A) Processing sheet with id= 1, first strand: chain 'A' and resid 47 through 52 removed outlier: 5.553A pdb=" N LEU A 22 " --> pdb=" O LEU A 37 " (cutoff:3.500A) removed outlier: 10.643A pdb=" N ALA A 39 " --> pdb=" O VAL A 20 " (cutoff:3.500A) removed outlier: 13.761A pdb=" N VAL A 20 " --> pdb=" O ALA A 39 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N ALA A 215 " --> pdb=" O VAL A 21 " (cutoff:3.500A) removed outlier: 5.573A pdb=" N THR A 25 " --> pdb=" O LEU A 211 " (cutoff:3.500A) removed outlier: 7.224A pdb=" N LEU A 211 " --> pdb=" O THR A 25 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N LEU A 181 " --> pdb=" O TRP A 212 " (cutoff:3.500A) removed outlier: 4.636A pdb=" N VAL A 214 " --> pdb=" O ASP A 179 " (cutoff:3.500A) removed outlier: 5.453A pdb=" N ASP A 179 " --> pdb=" O VAL A 214 " (cutoff:3.500A) Processing sheet with id= 2, first strand: chain 'A' and resid 67 through 70 removed outlier: 6.719A pdb=" N LEU A 120 " --> pdb=" O GLU A 70 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'A' and resid 193 through 196 Processing sheet with id= 4, first strand: chain 'A' and resid 233 through 237 removed outlier: 5.909A pdb=" N VAL A 233 " --> pdb=" O SER A 408 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N SER A 406 " --> pdb=" O ARG A 235 " (cutoff:3.500A) Processing sheet with id= 5, first strand: chain 'A' and resid 244 through 247 Processing sheet with id= 6, first strand: chain 'A' and resid 275 through 279 Processing sheet with id= 7, first strand: chain 'A' and resid 305 through 309 Processing sheet with id= 8, first strand: chain 'A' and resid 723 through 726 removed outlier: 3.884A pdb=" N HIS A 692 " --> pdb=" O SER A 795 " (cutoff:3.500A) removed outlier: 6.429A pdb=" N GLY A 696 " --> pdb=" O VAL A 791 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N VAL A 792 " --> pdb=" O MET A 655 " (cutoff:3.500A) removed outlier: 3.557A pdb=" N MET A 655 " --> pdb=" O VAL A 792 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N SER A 653 " --> pdb=" O PHE A 794 " (cutoff:3.500A) removed outlier: 3.926A pdb=" N GLN A 645 " --> pdb=" O HIS A1631 " (cutoff:3.500A) removed outlier: 4.392A pdb=" N VAL A 649 " --> pdb=" O PHE A1627 " (cutoff:3.500A) removed outlier: 6.338A pdb=" N LEU A1625 " --> pdb=" O HIS A 651 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N ARG A1637 " --> pdb=" O ILE A1632 " (cutoff:3.500A) Processing sheet with id= 9, first strand: chain 'A' and resid 765 through 769 removed outlier: 5.154A pdb=" N SER A 765 " --> pdb=" O ASP A 760 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N SER A 767 " --> pdb=" O CYS A 758 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N GLU A 676 " --> pdb=" O LEU A 803 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N ASP A 680 " --> pdb=" O LYS A 799 " (cutoff:3.500A) removed outlier: 6.682A pdb=" N LYS A 799 " --> pdb=" O ASP A 680 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N TRP A1617 " --> pdb=" O PHE A 802 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N LEU A1618 " --> pdb=" O GLU A1613 " (cutoff:3.500A) Processing sheet with id= 10, first strand: chain 'A' and resid 1147 through 1151 removed outlier: 3.736A pdb=" N GLN A1143 " --> pdb=" O ASP A1138 " (cutoff:3.500A) removed outlier: 6.569A pdb=" N MET A1113 " --> pdb=" O GLY A1139 " (cutoff:3.500A) removed outlier: 7.460A pdb=" N ASP A1112 " --> pdb=" O GLY A1208 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N GLY A1208 " --> pdb=" O ASP A1112 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N ALA A1090 " --> pdb=" O PRO A1203 " (cutoff:3.500A) removed outlier: 5.764A pdb=" N ILE A1087 " --> pdb=" O SER A1252 " (cutoff:3.500A) removed outlier: 7.469A pdb=" N THR A1248 " --> pdb=" O GLU A1091 " (cutoff:3.500A) removed outlier: 6.876A pdb=" N MET A1249 " --> pdb=" O PHE A1603 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N LEU A1251 " --> pdb=" O ASN A1601 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N LYS A1253 " --> pdb=" O MET A1599 " (cutoff:3.500A) removed outlier: 5.676A pdb=" N MET A1599 " --> pdb=" O LYS A1253 " (cutoff:3.500A) Processing sheet with id= 11, first strand: chain 'A' and resid 1171 through 1177 removed outlier: 3.898A pdb=" N THR A1172 " --> pdb=" O ASP A1167 " (cutoff:3.500A) removed outlier: 4.528A pdb=" N GLY A1163 " --> pdb=" O THR A1176 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N ASP A1160 " --> pdb=" O ALA A1107 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N ALA A1107 " --> pdb=" O ASP A1160 " (cutoff:3.500A) removed outlier: 5.812A pdb=" N PHE A1105 " --> pdb=" O VAL A1162 " (cutoff:3.500A) removed outlier: 5.950A pdb=" N GLY A1099 " --> pdb=" O MET A1168 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N GLU A1104 " --> pdb=" O ASN A1216 " (cutoff:3.500A) removed outlier: 3.533A pdb=" N VAL A1108 " --> pdb=" O VAL A1212 " (cutoff:3.500A) removed outlier: 6.568A pdb=" N VAL A1212 " --> pdb=" O VAL A1108 " (cutoff:3.500A) Processing sheet with id= 12, first strand: chain 'A' and resid 1256 through 1260 removed outlier: 6.929A pdb=" N LEU A1591 " --> pdb=" O SER A1305 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N SER A1305 " --> pdb=" O LEU A1591 " (cutoff:3.500A) removed outlier: 5.320A pdb=" N PHE A1301 " --> pdb=" O LEU A1595 " (cutoff:3.500A) removed outlier: 9.471A pdb=" N SER A1597 " --> pdb=" O ILE A1299 " (cutoff:3.500A) removed outlier: 14.486A pdb=" N ILE A1299 " --> pdb=" O SER A1597 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N ALA A1545 " --> pdb=" O MET A1300 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N PHE A1544 " --> pdb=" O TRP A1442 " (cutoff:3.500A) Processing sheet with id= 13, first strand: chain 'A' and resid 1268 through 1274 removed outlier: 3.697A pdb=" N TYR A1426 " --> pdb=" O VAL A1510 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N VAL A1510 " --> pdb=" O TYR A1426 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N TYR A1428 " --> pdb=" O GLY A1508 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N GLU A1506 " --> pdb=" O VAL A1430 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N ILE A1432 " --> pdb=" O GLY A1504 " (cutoff:3.500A) Processing sheet with id= 14, first strand: chain 'A' and resid 2788 through 2792 No H-bonds generated for sheet with id= 14 Processing sheet with id= 15, first strand: chain 'A' and resid 4136 through 4140 removed outlier: 3.500A pdb=" N VAL A4149 " --> pdb=" O ILE A4137 " (cutoff:3.500A) Processing sheet with id= 16, first strand: chain 'C' and resid 47 through 52 removed outlier: 5.553A pdb=" N LEU C 22 " --> pdb=" O LEU C 37 " (cutoff:3.500A) removed outlier: 10.644A pdb=" N ALA C 39 " --> pdb=" O VAL C 20 " (cutoff:3.500A) removed outlier: 13.762A pdb=" N VAL C 20 " --> pdb=" O ALA C 39 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N ALA C 215 " --> pdb=" O VAL C 21 " (cutoff:3.500A) removed outlier: 5.573A pdb=" N THR C 25 " --> pdb=" O LEU C 211 " (cutoff:3.500A) removed outlier: 7.224A pdb=" N LEU C 211 " --> pdb=" O THR C 25 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N LEU C 181 " --> pdb=" O TRP C 212 " (cutoff:3.500A) removed outlier: 4.636A pdb=" N VAL C 214 " --> pdb=" O ASP C 179 " (cutoff:3.500A) removed outlier: 5.453A pdb=" N ASP C 179 " --> pdb=" O VAL C 214 " (cutoff:3.500A) Processing sheet with id= 17, first strand: chain 'C' and resid 67 through 70 removed outlier: 6.719A pdb=" N LEU C 120 " --> pdb=" O GLU C 70 " (cutoff:3.500A) Processing sheet with id= 18, first strand: chain 'C' and resid 193 through 196 Processing sheet with id= 19, first strand: chain 'C' and resid 233 through 237 removed outlier: 5.910A pdb=" N VAL C 233 " --> pdb=" O SER C 408 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N SER C 406 " --> pdb=" O ARG C 235 " (cutoff:3.500A) Processing sheet with id= 20, first strand: chain 'C' and resid 244 through 247 Processing sheet with id= 21, first strand: chain 'C' and resid 275 through 279 Processing sheet with id= 22, first strand: chain 'C' and resid 305 through 309 Processing sheet with id= 23, first strand: chain 'C' and resid 723 through 726 removed outlier: 3.884A pdb=" N HIS C 692 " --> pdb=" O SER C 795 " (cutoff:3.500A) removed outlier: 6.429A pdb=" N GLY C 696 " --> pdb=" O VAL C 791 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N VAL C 792 " --> pdb=" O MET C 655 " (cutoff:3.500A) removed outlier: 3.557A pdb=" N MET C 655 " --> pdb=" O VAL C 792 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N SER C 653 " --> pdb=" O PHE C 794 " (cutoff:3.500A) removed outlier: 3.926A pdb=" N GLN C 645 " --> pdb=" O HIS C1631 " (cutoff:3.500A) removed outlier: 4.392A pdb=" N VAL C 649 " --> pdb=" O PHE C1627 " (cutoff:3.500A) removed outlier: 6.337A pdb=" N LEU C1625 " --> pdb=" O HIS C 651 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N ARG C1637 " --> pdb=" O ILE C1632 " (cutoff:3.500A) Processing sheet with id= 24, first strand: chain 'C' and resid 765 through 769 removed outlier: 5.154A pdb=" N SER C 765 " --> pdb=" O ASP C 760 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N SER C 767 " --> pdb=" O CYS C 758 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N GLU C 676 " --> pdb=" O LEU C 803 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N ASP C 680 " --> pdb=" O LYS C 799 " (cutoff:3.500A) removed outlier: 6.681A pdb=" N LYS C 799 " --> pdb=" O ASP C 680 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N TRP C1617 " --> pdb=" O PHE C 802 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N LEU C1618 " --> pdb=" O GLU C1613 " (cutoff:3.500A) Processing sheet with id= 25, first strand: chain 'C' and resid 1147 through 1151 removed outlier: 3.736A pdb=" N GLN C1143 " --> pdb=" O ASP C1138 " (cutoff:3.500A) removed outlier: 6.569A pdb=" N MET C1113 " --> pdb=" O GLY C1139 " (cutoff:3.500A) removed outlier: 7.460A pdb=" N ASP C1112 " --> pdb=" O GLY C1208 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N GLY C1208 " --> pdb=" O ASP C1112 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N ALA C1090 " --> pdb=" O PRO C1203 " (cutoff:3.500A) removed outlier: 5.764A pdb=" N ILE C1087 " --> pdb=" O SER C1252 " (cutoff:3.500A) removed outlier: 7.469A pdb=" N THR C1248 " --> pdb=" O GLU C1091 " (cutoff:3.500A) removed outlier: 6.876A pdb=" N MET C1249 " --> pdb=" O PHE C1603 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N LEU C1251 " --> pdb=" O ASN C1601 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N LYS C1253 " --> pdb=" O MET C1599 " (cutoff:3.500A) removed outlier: 5.676A pdb=" N MET C1599 " --> pdb=" O LYS C1253 " (cutoff:3.500A) Processing sheet with id= 26, first strand: chain 'C' and resid 1171 through 1177 removed outlier: 3.898A pdb=" N THR C1172 " --> pdb=" O ASP C1167 " (cutoff:3.500A) removed outlier: 4.528A pdb=" N GLY C1163 " --> pdb=" O THR C1176 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N ASP C1160 " --> pdb=" O ALA C1107 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N ALA C1107 " --> pdb=" O ASP C1160 " (cutoff:3.500A) removed outlier: 5.812A pdb=" N PHE C1105 " --> pdb=" O VAL C1162 " (cutoff:3.500A) removed outlier: 5.950A pdb=" N GLY C1099 " --> pdb=" O MET C1168 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N GLU C1104 " --> pdb=" O ASN C1216 " (cutoff:3.500A) removed outlier: 3.533A pdb=" N VAL C1108 " --> pdb=" O VAL C1212 " (cutoff:3.500A) removed outlier: 6.568A pdb=" N VAL C1212 " --> pdb=" O VAL C1108 " (cutoff:3.500A) Processing sheet with id= 27, first strand: chain 'C' and resid 1256 through 1260 removed outlier: 6.929A pdb=" N LEU C1591 " --> pdb=" O SER C1305 " (cutoff:3.500A) removed outlier: 3.864A pdb=" N SER C1305 " --> pdb=" O LEU C1591 " (cutoff:3.500A) removed outlier: 5.320A pdb=" N PHE C1301 " --> pdb=" O LEU C1595 " (cutoff:3.500A) removed outlier: 9.471A pdb=" N SER C1597 " --> pdb=" O ILE C1299 " (cutoff:3.500A) removed outlier: 14.486A pdb=" N ILE C1299 " --> pdb=" O SER C1597 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N ALA C1545 " --> pdb=" O MET C1300 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N PHE C1544 " --> pdb=" O TRP C1442 " (cutoff:3.500A) Processing sheet with id= 28, first strand: chain 'C' and resid 1268 through 1274 removed outlier: 3.697A pdb=" N TYR C1426 " --> pdb=" O VAL C1510 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N VAL C1510 " --> pdb=" O TYR C1426 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N TYR C1428 " --> pdb=" O GLY C1508 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N GLU C1506 " --> pdb=" O VAL C1430 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N ILE C1432 " --> pdb=" O GLY C1504 " (cutoff:3.500A) Processing sheet with id= 29, first strand: chain 'C' and resid 2788 through 2792 No H-bonds generated for sheet with id= 29 Processing sheet with id= 30, first strand: chain 'C' and resid 4136 through 4140 removed outlier: 3.500A pdb=" N VAL C4149 " --> pdb=" O ILE C4137 " (cutoff:3.500A) Processing sheet with id= 31, first strand: chain 'E' and resid 47 through 52 removed outlier: 5.553A pdb=" N LEU E 22 " --> pdb=" O LEU E 37 " (cutoff:3.500A) removed outlier: 10.643A pdb=" N ALA E 39 " --> pdb=" O VAL E 20 " (cutoff:3.500A) removed outlier: 13.761A pdb=" N VAL E 20 " --> pdb=" O ALA E 39 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N ALA E 215 " --> pdb=" O VAL E 21 " (cutoff:3.500A) removed outlier: 5.573A pdb=" N THR E 25 " --> pdb=" O LEU E 211 " (cutoff:3.500A) removed outlier: 7.224A pdb=" N LEU E 211 " --> pdb=" O THR E 25 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N LEU E 181 " --> pdb=" O TRP E 212 " (cutoff:3.500A) removed outlier: 4.637A pdb=" N VAL E 214 " --> pdb=" O ASP E 179 " (cutoff:3.500A) removed outlier: 5.453A pdb=" N ASP E 179 " --> pdb=" O VAL E 214 " (cutoff:3.500A) Processing sheet with id= 32, first strand: chain 'E' and resid 67 through 70 removed outlier: 6.720A pdb=" N LEU E 120 " --> pdb=" O GLU E 70 " (cutoff:3.500A) Processing sheet with id= 33, first strand: chain 'E' and resid 193 through 196 Processing sheet with id= 34, first strand: chain 'E' and resid 233 through 237 removed outlier: 5.909A pdb=" N VAL E 233 " --> pdb=" O SER E 408 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N SER E 406 " --> pdb=" O ARG E 235 " (cutoff:3.500A) Processing sheet with id= 35, first strand: chain 'E' and resid 244 through 247 Processing sheet with id= 36, first strand: chain 'E' and resid 275 through 279 Processing sheet with id= 37, first strand: chain 'E' and resid 305 through 309 Processing sheet with id= 38, first strand: chain 'E' and resid 723 through 726 removed outlier: 3.884A pdb=" N HIS E 692 " --> pdb=" O SER E 795 " (cutoff:3.500A) removed outlier: 6.429A pdb=" N GLY E 696 " --> pdb=" O VAL E 791 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N VAL E 792 " --> pdb=" O MET E 655 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N MET E 655 " --> pdb=" O VAL E 792 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N SER E 653 " --> pdb=" O PHE E 794 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N GLN E 645 " --> pdb=" O HIS E1631 " (cutoff:3.500A) removed outlier: 4.392A pdb=" N VAL E 649 " --> pdb=" O PHE E1627 " (cutoff:3.500A) removed outlier: 6.337A pdb=" N LEU E1625 " --> pdb=" O HIS E 651 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N ARG E1637 " --> pdb=" O ILE E1632 " (cutoff:3.500A) Processing sheet with id= 39, first strand: chain 'E' and resid 765 through 769 removed outlier: 5.154A pdb=" N SER E 765 " --> pdb=" O ASP E 760 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N SER E 767 " --> pdb=" O CYS E 758 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N GLU E 676 " --> pdb=" O LEU E 803 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N ASP E 680 " --> pdb=" O LYS E 799 " (cutoff:3.500A) removed outlier: 6.682A pdb=" N LYS E 799 " --> pdb=" O ASP E 680 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N TRP E1617 " --> pdb=" O PHE E 802 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N LEU E1618 " --> pdb=" O GLU E1613 " (cutoff:3.500A) Processing sheet with id= 40, first strand: chain 'E' and resid 1147 through 1151 removed outlier: 3.736A pdb=" N GLN E1143 " --> pdb=" O ASP E1138 " (cutoff:3.500A) removed outlier: 6.569A pdb=" N MET E1113 " --> pdb=" O GLY E1139 " (cutoff:3.500A) removed outlier: 7.461A pdb=" N ASP E1112 " --> pdb=" O GLY E1208 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N GLY E1208 " --> pdb=" O ASP E1112 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N ALA E1090 " --> pdb=" O PRO E1203 " (cutoff:3.500A) removed outlier: 5.764A pdb=" N ILE E1087 " --> pdb=" O SER E1252 " (cutoff:3.500A) removed outlier: 7.469A pdb=" N THR E1248 " --> pdb=" O GLU E1091 " (cutoff:3.500A) removed outlier: 6.876A pdb=" N MET E1249 " --> pdb=" O PHE E1603 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N LEU E1251 " --> pdb=" O ASN E1601 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N LYS E1253 " --> pdb=" O MET E1599 " (cutoff:3.500A) removed outlier: 5.676A pdb=" N MET E1599 " --> pdb=" O LYS E1253 " (cutoff:3.500A) Processing sheet with id= 41, first strand: chain 'E' and resid 1171 through 1177 removed outlier: 3.898A pdb=" N THR E1172 " --> pdb=" O ASP E1167 " (cutoff:3.500A) removed outlier: 4.529A pdb=" N GLY E1163 " --> pdb=" O THR E1176 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N ASP E1160 " --> pdb=" O ALA E1107 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N ALA E1107 " --> pdb=" O ASP E1160 " (cutoff:3.500A) removed outlier: 5.812A pdb=" N PHE E1105 " --> pdb=" O VAL E1162 " (cutoff:3.500A) removed outlier: 5.951A pdb=" N GLY E1099 " --> pdb=" O MET E1168 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N GLU E1104 " --> pdb=" O ASN E1216 " (cutoff:3.500A) removed outlier: 3.533A pdb=" N VAL E1108 " --> pdb=" O VAL E1212 " (cutoff:3.500A) removed outlier: 6.568A pdb=" N VAL E1212 " --> pdb=" O VAL E1108 " (cutoff:3.500A) Processing sheet with id= 42, first strand: chain 'E' and resid 1256 through 1260 removed outlier: 6.929A pdb=" N LEU E1591 " --> pdb=" O SER E1305 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N SER E1305 " --> pdb=" O LEU E1591 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N PHE E1301 " --> pdb=" O LEU E1595 " (cutoff:3.500A) removed outlier: 9.471A pdb=" N SER E1597 " --> pdb=" O ILE E1299 " (cutoff:3.500A) removed outlier: 14.486A pdb=" N ILE E1299 " --> pdb=" O SER E1597 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N ALA E1545 " --> pdb=" O MET E1300 " (cutoff:3.500A) removed outlier: 3.684A pdb=" N PHE E1544 " --> pdb=" O TRP E1442 " (cutoff:3.500A) Processing sheet with id= 43, first strand: chain 'E' and resid 1268 through 1274 removed outlier: 3.697A pdb=" N TYR E1426 " --> pdb=" O VAL E1510 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N VAL E1510 " --> pdb=" O TYR E1426 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N TYR E1428 " --> pdb=" O GLY E1508 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N GLU E1506 " --> pdb=" O VAL E1430 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N ILE E1432 " --> pdb=" O GLY E1504 " (cutoff:3.500A) Processing sheet with id= 44, first strand: chain 'E' and resid 2788 through 2792 No H-bonds generated for sheet with id= 44 Processing sheet with id= 45, first strand: chain 'E' and resid 4136 through 4140 removed outlier: 3.500A pdb=" N VAL E4149 " --> pdb=" O ILE E4137 " (cutoff:3.500A) Processing sheet with id= 46, first strand: chain 'G' and resid 47 through 52 removed outlier: 5.553A pdb=" N LEU G 22 " --> pdb=" O LEU G 37 " (cutoff:3.500A) removed outlier: 10.643A pdb=" N ALA G 39 " --> pdb=" O VAL G 20 " (cutoff:3.500A) removed outlier: 13.761A pdb=" N VAL G 20 " --> pdb=" O ALA G 39 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N ALA G 215 " --> pdb=" O VAL G 21 " (cutoff:3.500A) removed outlier: 5.573A pdb=" N THR G 25 " --> pdb=" O LEU G 211 " (cutoff:3.500A) removed outlier: 7.225A pdb=" N LEU G 211 " --> pdb=" O THR G 25 " (cutoff:3.500A) removed outlier: 3.601A pdb=" N LEU G 181 " --> pdb=" O TRP G 212 " (cutoff:3.500A) removed outlier: 4.636A pdb=" N VAL G 214 " --> pdb=" O ASP G 179 " (cutoff:3.500A) removed outlier: 5.453A pdb=" N ASP G 179 " --> pdb=" O VAL G 214 " (cutoff:3.500A) Processing sheet with id= 47, first strand: chain 'G' and resid 67 through 70 removed outlier: 6.719A pdb=" N LEU G 120 " --> pdb=" O GLU G 70 " (cutoff:3.500A) Processing sheet with id= 48, first strand: chain 'G' and resid 193 through 196 Processing sheet with id= 49, first strand: chain 'G' and resid 233 through 237 removed outlier: 5.910A pdb=" N VAL G 233 " --> pdb=" O SER G 408 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N SER G 406 " --> pdb=" O ARG G 235 " (cutoff:3.500A) Processing sheet with id= 50, first strand: chain 'G' and resid 244 through 247 Processing sheet with id= 51, first strand: chain 'G' and resid 275 through 279 Processing sheet with id= 52, first strand: chain 'G' and resid 305 through 309 Processing sheet with id= 53, first strand: chain 'G' and resid 723 through 726 removed outlier: 3.884A pdb=" N HIS G 692 " --> pdb=" O SER G 795 " (cutoff:3.500A) removed outlier: 6.429A pdb=" N GLY G 696 " --> pdb=" O VAL G 791 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N VAL G 792 " --> pdb=" O MET G 655 " (cutoff:3.500A) removed outlier: 3.557A pdb=" N MET G 655 " --> pdb=" O VAL G 792 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N SER G 653 " --> pdb=" O PHE G 794 " (cutoff:3.500A) removed outlier: 3.926A pdb=" N GLN G 645 " --> pdb=" O HIS G1631 " (cutoff:3.500A) removed outlier: 4.391A pdb=" N VAL G 649 " --> pdb=" O PHE G1627 " (cutoff:3.500A) removed outlier: 6.337A pdb=" N LEU G1625 " --> pdb=" O HIS G 651 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N ARG G1637 " --> pdb=" O ILE G1632 " (cutoff:3.500A) Processing sheet with id= 54, first strand: chain 'G' and resid 765 through 769 removed outlier: 5.154A pdb=" N SER G 765 " --> pdb=" O ASP G 760 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N SER G 767 " --> pdb=" O CYS G 758 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N GLU G 676 " --> pdb=" O LEU G 803 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N ASP G 680 " --> pdb=" O LYS G 799 " (cutoff:3.500A) removed outlier: 6.681A pdb=" N LYS G 799 " --> pdb=" O ASP G 680 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N TRP G1617 " --> pdb=" O PHE G 802 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N LEU G1618 " --> pdb=" O GLU G1613 " (cutoff:3.500A) Processing sheet with id= 55, first strand: chain 'G' and resid 1147 through 1151 removed outlier: 3.737A pdb=" N GLN G1143 " --> pdb=" O ASP G1138 " (cutoff:3.500A) removed outlier: 6.569A pdb=" N MET G1113 " --> pdb=" O GLY G1139 " (cutoff:3.500A) removed outlier: 7.459A pdb=" N ASP G1112 " --> pdb=" O GLY G1208 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N GLY G1208 " --> pdb=" O ASP G1112 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N ALA G1090 " --> pdb=" O PRO G1203 " (cutoff:3.500A) removed outlier: 5.764A pdb=" N ILE G1087 " --> pdb=" O SER G1252 " (cutoff:3.500A) removed outlier: 7.469A pdb=" N THR G1248 " --> pdb=" O GLU G1091 " (cutoff:3.500A) removed outlier: 6.877A pdb=" N MET G1249 " --> pdb=" O PHE G1603 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N LEU G1251 " --> pdb=" O ASN G1601 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N LYS G1253 " --> pdb=" O MET G1599 " (cutoff:3.500A) removed outlier: 5.676A pdb=" N MET G1599 " --> pdb=" O LYS G1253 " (cutoff:3.500A) Processing sheet with id= 56, first strand: chain 'G' and resid 1171 through 1177 removed outlier: 3.898A pdb=" N THR G1172 " --> pdb=" O ASP G1167 " (cutoff:3.500A) removed outlier: 4.528A pdb=" N GLY G1163 " --> pdb=" O THR G1176 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N ASP G1160 " --> pdb=" O ALA G1107 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N ALA G1107 " --> pdb=" O ASP G1160 " (cutoff:3.500A) removed outlier: 5.813A pdb=" N PHE G1105 " --> pdb=" O VAL G1162 " (cutoff:3.500A) removed outlier: 5.951A pdb=" N GLY G1099 " --> pdb=" O MET G1168 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N GLU G1104 " --> pdb=" O ASN G1216 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N VAL G1108 " --> pdb=" O VAL G1212 " (cutoff:3.500A) removed outlier: 6.567A pdb=" N VAL G1212 " --> pdb=" O VAL G1108 " (cutoff:3.500A) Processing sheet with id= 57, first strand: chain 'G' and resid 1256 through 1260 removed outlier: 6.929A pdb=" N LEU G1591 " --> pdb=" O SER G1305 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N SER G1305 " --> pdb=" O LEU G1591 " (cutoff:3.500A) removed outlier: 5.320A pdb=" N PHE G1301 " --> pdb=" O LEU G1595 " (cutoff:3.500A) removed outlier: 9.471A pdb=" N SER G1597 " --> pdb=" O ILE G1299 " (cutoff:3.500A) removed outlier: 14.486A pdb=" N ILE G1299 " --> pdb=" O SER G1597 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N ALA G1545 " --> pdb=" O MET G1300 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N PHE G1544 " --> pdb=" O TRP G1442 " (cutoff:3.500A) Processing sheet with id= 58, first strand: chain 'G' and resid 1268 through 1274 removed outlier: 3.697A pdb=" N TYR G1426 " --> pdb=" O VAL G1510 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N VAL G1510 " --> pdb=" O TYR G1426 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N TYR G1428 " --> pdb=" O GLY G1508 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N GLU G1506 " --> pdb=" O VAL G1430 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N ILE G1432 " --> pdb=" O GLY G1504 " (cutoff:3.500A) Processing sheet with id= 59, first strand: chain 'G' and resid 2788 through 2792 No H-bonds generated for sheet with id= 59 Processing sheet with id= 60, first strand: chain 'G' and resid 4136 through 4140 removed outlier: 3.500A pdb=" N VAL G4149 " --> pdb=" O ILE G4137 " (cutoff:3.500A) Processing sheet with id= 61, first strand: chain 'B' and resid 2 through 7 removed outlier: 3.773A pdb=" N GLU B 3 " --> pdb=" O THR B 75 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N GLU B 5 " --> pdb=" O LYS B 73 " (cutoff:3.500A) removed outlier: 6.818A pdb=" N ARG B 71 " --> pdb=" O ILE B 7 " (cutoff:3.500A) removed outlier: 6.666A pdb=" N VAL B 23 " --> pdb=" O LEU B 104 " (cutoff:3.500A) Processing sheet with id= 62, first strand: chain 'D' and resid 2 through 7 removed outlier: 3.774A pdb=" N GLU D 3 " --> pdb=" O THR D 75 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N GLU D 5 " --> pdb=" O LYS D 73 " (cutoff:3.500A) removed outlier: 6.818A pdb=" N ARG D 71 " --> pdb=" O ILE D 7 " (cutoff:3.500A) removed outlier: 6.666A pdb=" N VAL D 23 " --> pdb=" O LEU D 104 " (cutoff:3.500A) Processing sheet with id= 63, first strand: chain 'F' and resid 2 through 7 removed outlier: 3.774A pdb=" N GLU F 3 " --> pdb=" O THR F 75 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N GLU F 5 " --> pdb=" O LYS F 73 " (cutoff:3.500A) removed outlier: 6.818A pdb=" N ARG F 71 " --> pdb=" O ILE F 7 " (cutoff:3.500A) removed outlier: 6.666A pdb=" N VAL F 23 " --> pdb=" O LEU F 104 " (cutoff:3.500A) Processing sheet with id= 64, first strand: chain 'H' and resid 2 through 7 removed outlier: 3.773A pdb=" N GLU H 3 " --> pdb=" O THR H 75 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N GLU H 5 " --> pdb=" O LYS H 73 " (cutoff:3.500A) removed outlier: 6.818A pdb=" N ARG H 71 " --> pdb=" O ILE H 7 " (cutoff:3.500A) removed outlier: 6.665A pdb=" N VAL H 23 " --> pdb=" O LEU H 104 " (cutoff:3.500A) 4256 hydrogen bonds defined for protein. 12648 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 0 hydrogen bonds 0 hydrogen bond angles 0 basepair planarities 0 basepair parallelities 0 stacking parallelities Total time for adding SS restraints: 64.68 Time building geometry restraints manager: 33.28 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.18 - 1.31: 18360 1.31 - 1.44: 29272 1.44 - 1.57: 62504 1.57 - 1.70: 24 1.70 - 1.82: 1024 Bond restraints: 111184 Sorted by residual: bond pdb=" C5 ATP E6002 " pdb=" N7 ATP E6002 " ideal model delta sigma weight residual 1.387 1.314 0.073 1.00e-02 1.00e+04 5.26e+01 bond pdb=" C5 ATP A6002 " pdb=" N7 ATP A6002 " ideal model delta sigma weight residual 1.387 1.314 0.073 1.00e-02 1.00e+04 5.26e+01 bond pdb=" C5 ATP G6002 " pdb=" N7 ATP G6002 " ideal model delta sigma weight residual 1.387 1.314 0.073 1.00e-02 1.00e+04 5.26e+01 bond pdb=" C5 ATP C6002 " pdb=" N7 ATP C6002 " ideal model delta sigma weight residual 1.387 1.314 0.073 1.00e-02 1.00e+04 5.26e+01 bond pdb=" C4 ATP A6002 " pdb=" C5 ATP A6002 " ideal model delta sigma weight residual 1.388 1.448 -0.060 1.00e-02 1.00e+04 3.63e+01 ... (remaining 111179 not shown) Histogram of bond angle deviations from ideal: 96.88 - 105.58: 1981 105.58 - 114.28: 64811 114.28 - 122.97: 75915 122.97 - 131.67: 7425 131.67 - 140.37: 248 Bond angle restraints: 150380 Sorted by residual: angle pdb=" PA ATP E6002 " pdb=" O3A ATP E6002 " pdb=" PB ATP E6002 " ideal model delta sigma weight residual 136.83 116.07 20.76 1.00e+00 1.00e+00 4.31e+02 angle pdb=" PA ATP A6002 " pdb=" O3A ATP A6002 " pdb=" PB ATP A6002 " ideal model delta sigma weight residual 136.83 116.12 20.71 1.00e+00 1.00e+00 4.29e+02 angle pdb=" PA ATP C6002 " pdb=" O3A ATP C6002 " pdb=" PB ATP C6002 " ideal model delta sigma weight residual 136.83 116.12 20.71 1.00e+00 1.00e+00 4.29e+02 angle pdb=" PA ATP G6002 " pdb=" O3A ATP G6002 " pdb=" PB ATP G6002 " ideal model delta sigma weight residual 136.83 116.15 20.68 1.00e+00 1.00e+00 4.28e+02 angle pdb=" PB ATP G6002 " pdb=" O3B ATP G6002 " pdb=" PG ATP G6002 " ideal model delta sigma weight residual 139.87 123.35 16.52 1.00e+00 1.00e+00 2.73e+02 ... (remaining 150375 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 17.84: 57952 17.84 - 35.69: 6696 35.69 - 53.53: 1330 53.53 - 71.37: 204 71.37 - 89.21: 92 Dihedral angle restraints: 66274 sinusoidal: 25030 harmonic: 41244 Sorted by residual: dihedral pdb=" CA GLU A1847 " pdb=" C GLU A1847 " pdb=" N PRO A1848 " pdb=" CA PRO A1848 " ideal model delta harmonic sigma weight residual 180.00 -115.10 -64.90 0 5.00e+00 4.00e-02 1.68e+02 dihedral pdb=" CA GLU G1847 " pdb=" C GLU G1847 " pdb=" N PRO G1848 " pdb=" CA PRO G1848 " ideal model delta harmonic sigma weight residual -180.00 -115.10 -64.90 0 5.00e+00 4.00e-02 1.68e+02 dihedral pdb=" CA GLU C1847 " pdb=" C GLU C1847 " pdb=" N PRO C1848 " pdb=" CA PRO C1848 " ideal model delta harmonic sigma weight residual -180.00 -115.10 -64.90 0 5.00e+00 4.00e-02 1.68e+02 ... (remaining 66271 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.099: 15489 0.099 - 0.198: 1362 0.198 - 0.297: 81 0.297 - 0.396: 10 0.396 - 0.495: 6 Chirality restraints: 16948 Sorted by residual: chirality pdb=" CA LEU C4770 " pdb=" N LEU C4770 " pdb=" C LEU C4770 " pdb=" CB LEU C4770 " both_signs ideal model delta sigma weight residual False 2.51 2.02 0.50 2.00e-01 2.50e+01 6.13e+00 chirality pdb=" CA LEU E4770 " pdb=" N LEU E4770 " pdb=" C LEU E4770 " pdb=" CB LEU E4770 " both_signs ideal model delta sigma weight residual False 2.51 2.02 0.49 2.00e-01 2.50e+01 6.09e+00 chirality pdb=" CA LEU G4770 " pdb=" N LEU G4770 " pdb=" C LEU G4770 " pdb=" CB LEU G4770 " both_signs ideal model delta sigma weight residual False 2.51 2.08 0.43 2.00e-01 2.50e+01 4.66e+00 ... (remaining 16945 not shown) Planarity restraints: 19312 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" C ARG C2328 " 0.072 5.00e-02 4.00e+02 1.10e-01 1.94e+01 pdb=" N PRO C2329 " -0.191 5.00e-02 4.00e+02 pdb=" CA PRO C2329 " 0.061 5.00e-02 4.00e+02 pdb=" CD PRO C2329 " 0.058 5.00e-02 4.00e+02 delta sigma weight rms_deltas residual plane pdb=" C ARG E2328 " 0.066 5.00e-02 4.00e+02 1.01e-01 1.64e+01 pdb=" N PRO E2329 " -0.175 5.00e-02 4.00e+02 pdb=" CA PRO E2329 " 0.055 5.00e-02 4.00e+02 pdb=" CD PRO E2329 " 0.053 5.00e-02 4.00e+02 delta sigma weight rms_deltas residual plane pdb=" C LEU E2526 " 0.065 5.00e-02 4.00e+02 9.80e-02 1.54e+01 pdb=" N PRO E2527 " -0.170 5.00e-02 4.00e+02 pdb=" CA PRO E2527 " 0.050 5.00e-02 4.00e+02 pdb=" CD PRO E2527 " 0.054 5.00e-02 4.00e+02 ... (remaining 19309 not shown) Histogram of nonbonded interaction distances: 1.83 - 2.44: 533 2.44 - 3.06: 63760 3.06 - 3.67: 166356 3.67 - 4.29: 229447 4.29 - 4.90: 369618 Nonbonded interactions: 829714 Sorted by model distance: nonbonded pdb=" O ARG A2327 " pdb=" CG ARG A2328 " model vdw 1.827 3.440 nonbonded pdb=" O ARG G2327 " pdb=" CG ARG G2328 " model vdw 1.829 3.440 nonbonded pdb=" CD1 ILE C4845 " pdb=" CD1 TYR E4819 " model vdw 2.200 3.760 nonbonded pdb=" CD1 ILE E4845 " pdb=" CD1 TYR G4819 " model vdw 2.205 3.760 nonbonded pdb=" CD1 TYR A4819 " pdb=" CD1 ILE G4845 " model vdw 2.218 3.760 ... (remaining 829709 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model Found NCS groups: ncs_group { reference = chain 'A' selection = chain 'C' selection = chain 'E' selection = chain 'G' } ncs_group { reference = chain 'B' selection = chain 'D' selection = chain 'F' selection = chain 'H' } Set up NCS constraints No NCS constraints will be used in refinement. Set refine NCS operators Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=0.99 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as group one per residue Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 2.280 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.000 Assert all atoms have isotropic ADPs: 0.000 Construct map_model_manager: 0.060 Extract box with map and model: 17.270 Check model and map are aligned: 1.150 Set scattering table: 0.720 Process input model: 277.330 Find NCS groups from input model: 5.420 Set up NCS constraints: 0.630 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.000 Extract rigid body selections: 0.000 Check and reset occupancies: 0.010 Load rotamer database and sin/cos tables:2.720 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 307.590 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.8058 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.010 0.092 111184 Z= 0.619 Angle : 1.136 20.762 150380 Z= 0.648 Chirality : 0.060 0.495 16948 Planarity : 0.007 0.110 19312 Dihedral : 15.943 89.214 39514 Min Nonbonded Distance : 1.827 Molprobity Statistics. All-atom Clashscore : 8.44 Ramachandran Plot: Outliers : 0.25 % Allowed : 10.22 % Favored : 89.53 % Rotamer: Outliers : 0.80 % Allowed : 12.41 % Favored : 86.78 % Cbeta Deviations : 0.03 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 4.17 % Twisted General : 0.30 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -5.20 (0.05), residues: 13764 helix: -3.49 (0.04), residues: 6268 sheet: -2.81 (0.13), residues: 1384 loop : -3.47 (0.07), residues: 6112 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.019 0.002 TRP C 371 HIS 0.010 0.002 HIS C3733 PHE 0.034 0.003 PHE C1768 TYR 0.048 0.003 TYR G4645 ARG 0.010 0.001 ARG G1718 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 27528 Ramachandran restraints generated. 13764 Oldfield, 0 Emsley, 13764 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 27528 Ramachandran restraints generated. 13764 Oldfield, 0 Emsley, 13764 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 1392 residues out of total 12536 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 92 poor density : 1300 time to evaluate : 9.514 Fit side-chains revert: symmetry clash revert: symmetry clash Traceback (most recent call last): File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/build/../modules/phenix/phenix/command_line/real_space_refine.py", line 8, in run_program(real_space_refine.Program) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/iotbx/cli_parser.py", line 931, in run_program task.run() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/programs/real_space_refine.py", line 191, in run log = self.logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/rsr/wrappers.py", line 58, in __init__ log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 294, in __init__ self.caller(self.optimize_sidechains) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 312, in caller func() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 600, in optimize_sidechains log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 83, in __init__ rotatable_hd = self.rotatable_hd) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 180, in run_one pdb_hierarchy = self.run_one_one(args=args) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 131, in run_one_one log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 99, in __init__ self.loop(function = self.one_residue_iteration) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 209, in loop function(residue = residue) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 196, in one_residue_iteration log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 172, in __init__ self.fit_proline() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 217, in fit_proline for rotamer, sites_cart in rotamer_iterator: TypeError: 'NoneType' object is not iterable