Starting phenix.real_space_refine on Fri Dec 8 21:04:24 2023 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrs_9880/12_2023/6jrs_9880_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrs_9880/12_2023/6jrs_9880.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=3.7 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrs_9880/12_2023/6jrs_9880.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrs_9880/12_2023/6jrs_9880.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrs_9880/12_2023/6jrs_9880_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6jrs_9880/12_2023/6jrs_9880_updated.pdb" } resolution = 3.7 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= 0.001 sd= 0.007 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 7 Type Number sf(0) Gaussians Ca 12 9.91 5 Zn 4 6.06 5 P 12 5.49 5 S 672 5.16 5 C 71360 2.51 5 N 19224 2.21 5 O 20884 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "A PHE 42": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 61": "OD1" <-> "OD2" Residue "A PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 76": "NH1" <-> "NH2" Residue "A GLU 80": "OE1" <-> "OE2" Residue "A ARG 111": "NH1" <-> "NH2" Residue "A TYR 115": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 122": "NH1" <-> "NH2" Residue "A ARG 190": "NH1" <-> "NH2" Residue "A TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 227": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 257": "NH1" <-> "NH2" Residue "A PHE 362": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 414": "NH1" <-> "NH2" Residue "A PHE 463": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 473": "OE1" <-> "OE2" Residue "A ARG 478": "NH1" <-> "NH2" Residue "A GLU 535": "OE1" <-> "OE2" Residue "A GLU 566": "OE1" <-> "OE2" Residue "A GLU 573": "OE1" <-> "OE2" Residue "A GLU 584": "OE1" <-> "OE2" Residue "A GLU 591": "OE1" <-> "OE2" Residue "A ARG 626": "NH1" <-> "NH2" Residue "A PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 711": "OE1" <-> "OE2" Residue "A PHE 788": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 830": "OE1" <-> "OE2" Residue "A ASP 849": "OD1" <-> "OD2" Residue "A PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 904": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 982": "OD1" <-> "OD2" Residue "A GLU 1052": "OE1" <-> "OE2" Residue "A PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 1309": "OE1" <-> "OE2" Residue "A TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 1453": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 1471": "OD1" <-> "OD2" Residue "A PHE 1520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 1526": "OD1" <-> "OD2" Residue "A PHE 1555": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 1623": "OE1" <-> "OE2" Residue "A PHE 1627": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 1690": "OE1" <-> "OE2" Residue "A PHE 1768": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 1807": "NH1" <-> "NH2" Residue "A GLU 1815": "OE1" <-> "OE2" Residue "A GLU 2035": "OE1" <-> "OE2" Residue "A ASP 2078": "OD1" <-> "OD2" Residue "A GLU 2174": "OE1" <-> "OE2" Residue "A TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 2260": "OE1" <-> "OE2" Residue "A GLU 2264": "OE1" <-> "OE2" Residue "A GLU 2315": "OE1" <-> "OE2" Residue "A ARG 2323": "NH1" <-> "NH2" Residue "A ARG 2327": "NH1" <-> "NH2" Residue "A PHE 2461": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 2519": "NH1" <-> "NH2" Residue "A TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 2708": "OD1" <-> "OD2" Residue "A GLU 2719": "OE1" <-> "OE2" Residue "A TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 2727": "OE1" <-> "OE2" Residue "A ASP 2731": "OD1" <-> "OD2" Residue "A ASP 2750": "OD1" <-> "OD2" Residue "A GLU 2843": "OE1" <-> "OE2" Residue "A GLU 2862": "OE1" <-> "OE2" Residue "A PHE 3637": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 3639": "OD1" <-> "OD2" Residue "A ASP 3663": "OD1" <-> "OD2" Residue "A GLU 3684": "OE1" <-> "OE2" Residue "A TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 3791": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 3877": "OD1" <-> "OD2" Residue "A PHE 3889": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 3962": "OD1" <-> "OD2" Residue "A GLU 4063": "OE1" <-> "OE2" Residue "A GLU 4108": "OE1" <-> "OE2" Residue "A ASP 4113": "OD1" <-> "OD2" Residue "A ARG 4148": "NH1" <-> "NH2" Residue "A TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4158": "NH1" <-> "NH2" Residue "A GLU 4183": "OE1" <-> "OE2" Residue "A GLU 4195": "OE1" <-> "OE2" Residue "A ARG 4498": "NH1" <-> "NH2" Residue "A TYR 4501": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4504": "NH1" <-> "NH2" Residue "A TYR 4521": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 4560": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4606": "OE1" <-> "OE2" Residue "A PHE 4661": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4669": "OE1" <-> "OE2" Residue "A PHE 4751": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4791": "NH1" <-> "NH2" Residue "A TYR 4794": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4823": "NH1" <-> "NH2" Residue "A GLU 4831": "OE1" <-> "OE2" Residue "A TYR 4843": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4853": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 4869": "OD1" <-> "OD2" Residue "A GLU 4886": "OE1" <-> "OE2" Residue "A TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B ARG 13": "NH1" <-> "NH2" Residue "B PHE 59": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 20": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 66": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 69": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 42": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 61": "OD1" <-> "OD2" Residue "D PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 76": "NH1" <-> "NH2" Residue "D GLU 80": "OE1" <-> "OE2" Residue "D ARG 111": "NH1" <-> "NH2" Residue "D TYR 115": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 122": "NH1" <-> "NH2" Residue "D ARG 190": "NH1" <-> "NH2" Residue "D TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 227": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 257": "NH1" <-> "NH2" Residue "D PHE 362": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 414": "NH1" <-> "NH2" Residue "D PHE 463": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 473": "OE1" <-> "OE2" Residue "D ARG 478": "NH1" <-> "NH2" Residue "D GLU 535": "OE1" <-> "OE2" Residue "D GLU 566": "OE1" <-> "OE2" Residue "D GLU 573": "OE1" <-> "OE2" Residue "D GLU 584": "OE1" <-> "OE2" Residue "D GLU 591": "OE1" <-> "OE2" Residue "D ARG 626": "NH1" <-> "NH2" Residue "D PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 711": "OE1" <-> "OE2" Residue "D PHE 788": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 830": "OE1" <-> "OE2" Residue "D ASP 849": "OD1" <-> "OD2" Residue "D PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 904": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 982": "OD1" <-> "OD2" Residue "D GLU 1052": "OE1" <-> "OE2" Residue "D PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 1309": "OE1" <-> "OE2" Residue "D TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 1453": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 1471": "OD1" <-> "OD2" Residue "D PHE 1520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 1526": "OD1" <-> "OD2" Residue "D PHE 1555": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 1623": "OE1" <-> "OE2" Residue "D PHE 1627": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 1690": "OE1" <-> "OE2" Residue "D PHE 1768": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 1807": "NH1" <-> "NH2" Residue "D GLU 1815": "OE1" <-> "OE2" Residue "D GLU 2035": "OE1" <-> "OE2" Residue "D ASP 2078": "OD1" <-> "OD2" Residue "D GLU 2174": "OE1" <-> "OE2" Residue "D TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 2260": "OE1" <-> "OE2" Residue "D GLU 2264": "OE1" <-> "OE2" Residue "D GLU 2315": "OE1" <-> "OE2" Residue "D ARG 2323": "NH1" <-> "NH2" Residue "D ARG 2327": "NH1" <-> "NH2" Residue "D PHE 2461": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 2519": "NH1" <-> "NH2" Residue "D TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 2708": "OD1" <-> "OD2" Residue "D GLU 2719": "OE1" <-> "OE2" Residue "D TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 2727": "OE1" <-> "OE2" Residue "D ASP 2731": "OD1" <-> "OD2" Residue "D ASP 2750": "OD1" <-> "OD2" Residue "D GLU 2843": "OE1" <-> "OE2" Residue "D GLU 2862": "OE1" <-> "OE2" Residue "D PHE 3637": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 3639": "OD1" <-> "OD2" Residue "D ASP 3663": "OD1" <-> "OD2" Residue "D GLU 3684": "OE1" <-> "OE2" Residue "D TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 3791": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 3877": "OD1" <-> "OD2" Residue "D PHE 3889": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 3962": "OD1" <-> "OD2" Residue "D GLU 4063": "OE1" <-> "OE2" Residue "D GLU 4108": "OE1" <-> "OE2" Residue "D ASP 4113": "OD1" <-> "OD2" Residue "D ARG 4148": "NH1" <-> "NH2" Residue "D TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 4158": "NH1" <-> "NH2" Residue "D GLU 4183": "OE1" <-> "OE2" Residue "D GLU 4195": "OE1" <-> "OE2" Residue "D ARG 4498": "NH1" <-> "NH2" Residue "D TYR 4501": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 4504": "NH1" <-> "NH2" Residue "D TYR 4521": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 4560": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 4606": "OE1" <-> "OE2" Residue "D PHE 4661": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 4669": "OE1" <-> "OE2" Residue "D PHE 4751": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 4791": "NH1" <-> "NH2" Residue "D TYR 4794": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 4823": "NH1" <-> "NH2" Residue "D GLU 4831": "OE1" <-> "OE2" Residue "D TYR 4843": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 4853": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ASP 4869": "OD1" <-> "OD2" Residue "D GLU 4886": "OE1" <-> "OE2" Residue "D TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 13": "NH1" <-> "NH2" Residue "E PHE 59": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F PHE 20": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F PHE 66": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F PHE 69": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 42": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 61": "OD1" <-> "OD2" Residue "G PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 76": "NH1" <-> "NH2" Residue "G GLU 80": "OE1" <-> "OE2" Residue "G ARG 111": "NH1" <-> "NH2" Residue "G TYR 115": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 122": "NH1" <-> "NH2" Residue "G ARG 190": "NH1" <-> "NH2" Residue "G TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 227": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 257": "NH1" <-> "NH2" Residue "G PHE 362": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 414": "NH1" <-> "NH2" Residue "G PHE 463": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 473": "OE1" <-> "OE2" Residue "G ARG 478": "NH1" <-> "NH2" Residue "G GLU 535": "OE1" <-> "OE2" Residue "G GLU 566": "OE1" <-> "OE2" Residue "G GLU 573": "OE1" <-> "OE2" Residue "G GLU 584": "OE1" <-> "OE2" Residue "G GLU 591": "OE1" <-> "OE2" Residue "G ARG 626": "NH1" <-> "NH2" Residue "G PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 711": "OE1" <-> "OE2" Residue "G PHE 788": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 830": "OE1" <-> "OE2" Residue "G ASP 849": "OD1" <-> "OD2" Residue "G PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 904": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 982": "OD1" <-> "OD2" Residue "G GLU 1052": "OE1" <-> "OE2" Residue "G PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 1309": "OE1" <-> "OE2" Residue "G TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 1453": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 1471": "OD1" <-> "OD2" Residue "G PHE 1520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 1526": "OD1" <-> "OD2" Residue "G PHE 1555": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 1623": "OE1" <-> "OE2" Residue "G PHE 1627": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 1690": "OE1" <-> "OE2" Residue "G PHE 1768": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 1807": "NH1" <-> "NH2" Residue "G GLU 1815": "OE1" <-> "OE2" Residue "G GLU 2035": "OE1" <-> "OE2" Residue "G ASP 2078": "OD1" <-> "OD2" Residue "G GLU 2174": "OE1" <-> "OE2" Residue "G TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 2260": "OE1" <-> "OE2" Residue "G GLU 2264": "OE1" <-> "OE2" Residue "G GLU 2315": "OE1" <-> "OE2" Residue "G ARG 2323": "NH1" <-> "NH2" Residue "G ARG 2327": "NH1" <-> "NH2" Residue "G PHE 2461": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 2519": "NH1" <-> "NH2" Residue "G TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 2708": "OD1" <-> "OD2" Residue "G GLU 2719": "OE1" <-> "OE2" Residue "G TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 2727": "OE1" <-> "OE2" Residue "G ASP 2731": "OD1" <-> "OD2" Residue "G ASP 2750": "OD1" <-> "OD2" Residue "G GLU 2843": "OE1" <-> "OE2" Residue "G GLU 2862": "OE1" <-> "OE2" Residue "G PHE 3637": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 3639": "OD1" <-> "OD2" Residue "G ASP 3663": "OD1" <-> "OD2" Residue "G GLU 3684": "OE1" <-> "OE2" Residue "G TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 3791": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 3877": "OD1" <-> "OD2" Residue "G PHE 3889": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 3962": "OD1" <-> "OD2" Residue "G GLU 4063": "OE1" <-> "OE2" Residue "G GLU 4108": "OE1" <-> "OE2" Residue "G ASP 4113": "OD1" <-> "OD2" Residue "G ARG 4148": "NH1" <-> "NH2" Residue "G TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4158": "NH1" <-> "NH2" Residue "G GLU 4183": "OE1" <-> "OE2" Residue "G GLU 4195": "OE1" <-> "OE2" Residue "G ARG 4498": "NH1" <-> "NH2" Residue "G TYR 4501": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4504": "NH1" <-> "NH2" Residue "G TYR 4521": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 4560": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 4606": "OE1" <-> "OE2" Residue "G PHE 4661": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 4669": "OE1" <-> "OE2" Residue "G PHE 4751": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4791": "NH1" <-> "NH2" Residue "G TYR 4794": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4823": "NH1" <-> "NH2" Residue "G GLU 4831": "OE1" <-> "OE2" Residue "G TYR 4843": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4853": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 4869": "OD1" <-> "OD2" Residue "G GLU 4886": "OE1" <-> "OE2" Residue "G TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H ARG 13": "NH1" <-> "NH2" Residue "H PHE 59": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "I PHE 20": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "I PHE 66": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "I PHE 69": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 42": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 61": "OD1" <-> "OD2" Residue "J PHE 67": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 76": "NH1" <-> "NH2" Residue "J GLU 80": "OE1" <-> "OE2" Residue "J ARG 111": "NH1" <-> "NH2" Residue "J TYR 115": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 122": "NH1" <-> "NH2" Residue "J ARG 190": "NH1" <-> "NH2" Residue "J TYR 196": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 227": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 257": "NH1" <-> "NH2" Residue "J PHE 362": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 414": "NH1" <-> "NH2" Residue "J PHE 463": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 473": "OE1" <-> "OE2" Residue "J ARG 478": "NH1" <-> "NH2" Residue "J GLU 535": "OE1" <-> "OE2" Residue "J GLU 566": "OE1" <-> "OE2" Residue "J GLU 573": "OE1" <-> "OE2" Residue "J GLU 584": "OE1" <-> "OE2" Residue "J GLU 591": "OE1" <-> "OE2" Residue "J ARG 626": "NH1" <-> "NH2" Residue "J PHE 660": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 711": "OE1" <-> "OE2" Residue "J PHE 788": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 830": "OE1" <-> "OE2" Residue "J ASP 849": "OD1" <-> "OD2" Residue "J PHE 862": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 904": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 982": "OD1" <-> "OD2" Residue "J GLU 1052": "OE1" <-> "OE2" Residue "J PHE 1088": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 1135": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 1192": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 1195": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 1309": "OE1" <-> "OE2" Residue "J TYR 1427": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 1453": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 1471": "OD1" <-> "OD2" Residue "J PHE 1520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 1526": "OD1" <-> "OD2" Residue "J PHE 1555": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 1623": "OE1" <-> "OE2" Residue "J PHE 1627": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 1690": "OE1" <-> "OE2" Residue "J PHE 1768": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 1807": "NH1" <-> "NH2" Residue "J GLU 1815": "OE1" <-> "OE2" Residue "J GLU 2035": "OE1" <-> "OE2" Residue "J ASP 2078": "OD1" <-> "OD2" Residue "J GLU 2174": "OE1" <-> "OE2" Residue "J TYR 2203": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 2260": "OE1" <-> "OE2" Residue "J GLU 2264": "OE1" <-> "OE2" Residue "J GLU 2315": "OE1" <-> "OE2" Residue "J ARG 2323": "NH1" <-> "NH2" Residue "J ARG 2327": "NH1" <-> "NH2" Residue "J PHE 2461": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 2519": "NH1" <-> "NH2" Residue "J TYR 2520": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 2708": "OD1" <-> "OD2" Residue "J GLU 2719": "OE1" <-> "OE2" Residue "J TYR 2720": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 2727": "OE1" <-> "OE2" Residue "J ASP 2731": "OD1" <-> "OD2" Residue "J ASP 2750": "OD1" <-> "OD2" Residue "J GLU 2843": "OE1" <-> "OE2" Residue "J GLU 2862": "OE1" <-> "OE2" Residue "J PHE 3637": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 3639": "OD1" <-> "OD2" Residue "J ASP 3663": "OD1" <-> "OD2" Residue "J GLU 3684": "OE1" <-> "OE2" Residue "J TYR 3689": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 3692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 3791": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 3877": "OD1" <-> "OD2" Residue "J PHE 3889": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 3962": "OD1" <-> "OD2" Residue "J GLU 4063": "OE1" <-> "OE2" Residue "J GLU 4108": "OE1" <-> "OE2" Residue "J ASP 4113": "OD1" <-> "OD2" Residue "J ARG 4148": "NH1" <-> "NH2" Residue "J TYR 4150": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 4158": "NH1" <-> "NH2" Residue "J GLU 4183": "OE1" <-> "OE2" Residue "J GLU 4195": "OE1" <-> "OE2" Residue "J ARG 4498": "NH1" <-> "NH2" Residue "J TYR 4501": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 4504": "NH1" <-> "NH2" Residue "J TYR 4521": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 4560": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J TYR 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 4606": "OE1" <-> "OE2" Residue "J PHE 4661": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J GLU 4669": "OE1" <-> "OE2" Residue "J PHE 4751": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 4791": "NH1" <-> "NH2" Residue "J TYR 4794": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ARG 4823": "NH1" <-> "NH2" Residue "J GLU 4831": "OE1" <-> "OE2" Residue "J TYR 4843": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J PHE 4853": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "J ASP 4869": "OD1" <-> "OD2" Residue "J GLU 4886": "OE1" <-> "OE2" Residue "J TYR 4919": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K ARG 13": "NH1" <-> "NH2" Residue "K PHE 59": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K TYR 82": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "L PHE 20": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "L PHE 66": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "L PHE 69": "CD1" <-> "CD2" "CE1" <-> "CE2" Time to flip residues: 0.27s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/chem_data/mon_lib" Total number of atoms: 112168 Number of models: 1 Model: "" Number of chains: 20 Chain: "A" Number of atoms: 26650 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3488, 26650 Classifications: {'peptide': 3488} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 349} Link IDs: {'PTRANS': 120, 'TRANS': 3367} Chain breaks: 60 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1426 Unresolved non-hydrogen angles: 1819 Unresolved non-hydrogen dihedrals: 1179 Unresolved non-hydrogen chiralities: 127 Planarities with less than four sites: {'GLN:plan1': 19, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 18, 'TRP:plan': 2, 'ASP:plan': 25, 'PHE:plan': 18, 'GLU:plan': 36, 'ARG:plan': 27} Unresolved non-hydrogen planarities: 787 Chain: "B" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "C" Number of atoms: 524 Number of conformers: 1 Conformer: "" Number of residues, atoms: 68, 524 Classifications: {'peptide': 68} Link IDs: {'PTRANS': 2, 'TRANS': 65} Chain: "D" Number of atoms: 26650 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3488, 26650 Classifications: {'peptide': 3488} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 349} Link IDs: {'PTRANS': 120, 'TRANS': 3367} Chain breaks: 60 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1426 Unresolved non-hydrogen angles: 1819 Unresolved non-hydrogen dihedrals: 1178 Unresolved non-hydrogen chiralities: 127 Planarities with less than four sites: {'GLN:plan1': 19, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 18, 'TRP:plan': 2, 'ASP:plan': 25, 'PHE:plan': 18, 'GLU:plan': 36, 'ARG:plan': 27} Unresolved non-hydrogen planarities: 787 Chain: "E" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "F" Number of atoms: 524 Number of conformers: 1 Conformer: "" Number of residues, atoms: 68, 524 Classifications: {'peptide': 68} Link IDs: {'PTRANS': 2, 'TRANS': 65} Chain: "G" Number of atoms: 26650 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3488, 26650 Classifications: {'peptide': 3488} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 349} Link IDs: {'PTRANS': 120, 'TRANS': 3367} Chain breaks: 60 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1426 Unresolved non-hydrogen angles: 1819 Unresolved non-hydrogen dihedrals: 1179 Unresolved non-hydrogen chiralities: 127 Planarities with less than four sites: {'GLN:plan1': 19, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 18, 'TRP:plan': 2, 'ASP:plan': 25, 'PHE:plan': 18, 'GLU:plan': 36, 'ARG:plan': 27} Unresolved non-hydrogen planarities: 787 Chain: "H" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "I" Number of atoms: 524 Number of conformers: 1 Conformer: "" Number of residues, atoms: 68, 524 Classifications: {'peptide': 68} Link IDs: {'PTRANS': 2, 'TRANS': 65} Chain: "J" Number of atoms: 26650 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3488, 26650 Classifications: {'peptide': 3488} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 349} Link IDs: {'PTRANS': 120, 'TRANS': 3367} Chain breaks: 60 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 1426 Unresolved non-hydrogen angles: 1819 Unresolved non-hydrogen dihedrals: 1178 Unresolved non-hydrogen chiralities: 127 Planarities with less than four sites: {'GLN:plan1': 19, 'HIS:plan': 20, 'TYR:plan': 14, 'ASN:plan1': 18, 'TRP:plan': 2, 'ASP:plan': 25, 'PHE:plan': 18, 'GLU:plan': 36, 'ARG:plan': 27} Unresolved non-hydrogen planarities: 787 Chain: "K" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 819 Classifications: {'peptide': 107} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 99} Chain: "L" Number of atoms: 524 Number of conformers: 1 Conformer: "" Number of residues, atoms: 68, 524 Classifications: {'peptide': 68} Link IDs: {'PTRANS': 2, 'TRANS': 65} Chain: "A" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "C" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' CA': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "D" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "F" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' CA': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "G" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "I" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' CA': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "J" Number of atoms: 47 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 47 Unusual residues: {' CA': 1, ' ZN': 1, 'ATP': 1, 'CFF': 1} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "L" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' CA': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} List of CYS excluded from plausible disulfide bonds: (reason: may participate in coordination) ATOM 26009 SG CYS A4889 204.589 205.127 84.583 1.00 34.58 S ATOM 26034 SG CYS A4892 204.881 203.634 88.673 1.00 30.91 S ATOM 54002 SG CYS D4889 205.141 175.072 84.592 1.00 34.58 S ATOM 54027 SG CYS D4892 203.648 174.780 88.681 1.00 30.91 S ATOM 81995 SG CYS G4889 175.091 174.550 84.584 1.00 34.58 S ATOM 82020 SG CYS G4892 174.799 176.043 88.674 1.00 30.91 S ATOM A07PG SG CYS J4889 174.545 204.593 84.586 1.00 34.58 S ATOM A07Q5 SG CYS J4892 176.038 204.885 88.676 1.00 30.91 S Residues with excluded nonbonded symmetry interactions: 4 residue: pdb=" N HIS B 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS B 87 " occ=0.99 residue: pdb=" N HIS E 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS E 87 " occ=0.99 residue: pdb=" N HIS H 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS H 87 " occ=0.99 residue: pdb=" N HIS K 87 " occ=0.99 ... (8 atoms not shown) pdb=" NE2 HIS K 87 " occ=0.99 Time building chain proxies: 41.31, per 1000 atoms: 0.37 Number of scatterers: 112168 At special positions: 0 Unit cell: (380.759, 380.759, 204.017, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 7 Type Number sf(0) Zn 4 29.99 Ca 12 19.99 S 672 16.00 P 12 15.00 O 20884 8.00 N 19224 7.00 C 71360 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=0, symmetry=0 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=0, symmetry=0 Time building additional restraints: 30.64 Conformation dependent library (CDL) restraints added in 14.8 seconds Dynamic metal coordination Zn2+ tetrahedral coordination pdb=" ZN A6000 " pdb="ZN ZN A6000 " - pdb=" NE2 HIS A4909 " pdb="ZN ZN A6000 " - pdb=" SG CYS A4892 " pdb="ZN ZN A6000 " - pdb=" SG CYS A4889 " pdb="ZN ZN A6000 " - pdb=" NE2 HIS A4914 " pdb=" ZN D6000 " pdb="ZN ZN D6000 " - pdb=" NE2 HIS D4909 " pdb="ZN ZN D6000 " - pdb=" SG CYS D4892 " pdb="ZN ZN D6000 " - pdb=" SG CYS D4889 " pdb="ZN ZN D6000 " - pdb=" NE2 HIS D4914 " pdb=" ZN G6000 " pdb="ZN ZN G6000 " - pdb=" NE2 HIS G4909 " pdb="ZN ZN G6000 " - pdb=" SG CYS G4892 " pdb="ZN ZN G6000 " - pdb=" SG CYS G4889 " pdb="ZN ZN G6000 " - pdb=" NE2 HIS G4914 " pdb=" ZN J6000 " pdb="ZN ZN J6000 " - pdb=" NE2 HIS J4909 " pdb="ZN ZN J6000 " - pdb=" SG CYS J4892 " pdb="ZN ZN J6000 " - pdb=" SG CYS J4889 " pdb="ZN ZN J6000 " - pdb=" NE2 HIS J4914 " Number of angles added : 8 28296 Ramachandran restraints generated. 14148 Oldfield, 0 Emsley, 14148 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 27472 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 552 helices and 96 sheets defined 57.8% alpha, 8.8% beta 0 base pairs and 0 stacking pairs defined. Time for finding SS restraints: 29.78 Creating SS restraints... Processing helix chain 'A' and resid 51 through 56 removed outlier: 5.703A pdb=" N SER A 55 " --> pdb=" O SER A 51 " (cutoff:3.500A) removed outlier: 5.956A pdb=" N LYS A 56 " --> pdb=" O THR A 52 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 51 through 56' Processing helix chain 'A' and resid 61 through 66 removed outlier: 5.303A pdb=" N CYS A 65 " --> pdb=" O ASP A 61 " (cutoff:3.500A) Processing helix chain 'A' and resid 74 through 84 Processing helix chain 'A' and resid 265 through 271 removed outlier: 4.495A pdb=" N VAL A 269 " --> pdb=" O GLY A 265 " (cutoff:3.500A) removed outlier: 4.944A pdb=" N ALA A 271 " --> pdb=" O VAL A 267 " (cutoff:3.500A) Processing helix chain 'A' and resid 409 through 438 removed outlier: 3.804A pdb=" N ARG A 420 " --> pdb=" O ALA A 416 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N THR A 422 " --> pdb=" O VAL A 418 " (cutoff:3.500A) removed outlier: 4.042A pdb=" N LEU A 425 " --> pdb=" O SER A 421 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N ARG A 428 " --> pdb=" O PHE A 424 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N GLY A 432 " --> pdb=" O ARG A 428 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N LEU A 433 " --> pdb=" O PHE A 429 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N LEU A 436 " --> pdb=" O GLY A 432 " (cutoff:3.500A) removed outlier: 4.306A pdb=" N LYS A 438 " --> pdb=" O ASP A 434 " (cutoff:3.500A) Processing helix chain 'A' and resid 448 through 464 removed outlier: 4.190A pdb=" N VAL A 452 " --> pdb=" O PRO A 448 " (cutoff:3.500A) removed outlier: 3.650A pdb=" N LEU A 454 " --> pdb=" O GLU A 450 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N SER A 455 " --> pdb=" O SER A 451 " (cutoff:3.500A) removed outlier: 4.436A pdb=" N GLN A 457 " --> pdb=" O SER A 453 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N ASP A 458 " --> pdb=" O LEU A 454 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N LEU A 459 " --> pdb=" O SER A 455 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N PHE A 463 " --> pdb=" O LEU A 459 " (cutoff:3.500A) Processing helix chain 'A' and resid 471 through 493 removed outlier: 3.859A pdb=" N GLN A 476 " --> pdb=" O HIS A 472 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N ASN A 477 " --> pdb=" O GLU A 473 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE A 489 " --> pdb=" O ARG A 485 " (cutoff:3.500A) removed outlier: 4.577A pdb=" N GLU A 492 " --> pdb=" O LEU A 488 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N GLY A 493 " --> pdb=" O PHE A 489 " (cutoff:3.500A) Processing helix chain 'A' and resid 494 through 507 removed outlier: 3.655A pdb=" N LEU A 499 " --> pdb=" O ILE A 495 " (cutoff:3.500A) removed outlier: 3.888A pdb=" N CYS A 501 " --> pdb=" O LEU A 497 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N VAL A 507 " --> pdb=" O ASP A 503 " (cutoff:3.500A) Processing helix chain 'A' and resid 519 through 542 removed outlier: 3.846A pdb=" N GLY A 523 " --> pdb=" O GLY A 519 " (cutoff:3.500A) removed outlier: 4.470A pdb=" N GLU A 524 " --> pdb=" O ARG A 520 " (cutoff:3.500A) removed outlier: 6.151A pdb=" N SER A 525 " --> pdb=" O GLU A 521 " (cutoff:3.500A) removed outlier: 5.999A pdb=" N TRP A 526 " --> pdb=" O ALA A 522 " (cutoff:3.500A) removed outlier: 5.936A pdb=" N LYS A 527 " --> pdb=" O GLY A 523 " (cutoff:3.500A) removed outlier: 5.837A pdb=" N SER A 528 " --> pdb=" O GLU A 524 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N ILE A 541 " --> pdb=" O LEU A 537 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N ARG A 542 " --> pdb=" O ALA A 538 " (cutoff:3.500A) Processing helix chain 'A' and resid 544 through 552 removed outlier: 4.165A pdb=" N SER A 552 " --> pdb=" O CYS A 548 " (cutoff:3.500A) Processing helix chain 'A' and resid 554 through 563 removed outlier: 3.554A pdb=" N LEU A 558 " --> pdb=" O SER A 554 " (cutoff:3.500A) removed outlier: 4.978A pdb=" N GLU A 563 " --> pdb=" O ILE A 559 " (cutoff:3.500A) Processing helix chain 'A' and resid 564 through 582 removed outlier: 6.129A pdb=" N SER A 568 " --> pdb=" O ARG A 564 " (cutoff:3.500A) removed outlier: 6.872A pdb=" N SER A 569 " --> pdb=" O LEU A 565 " (cutoff:3.500A) removed outlier: 6.061A pdb=" N GLY A 570 " --> pdb=" O GLU A 566 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N ILE A 571 " --> pdb=" O ALA A 567 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N GLU A 573 " --> pdb=" O SER A 569 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N VAL A 580 " --> pdb=" O HIS A 576 " (cutoff:3.500A) removed outlier: 5.591A pdb=" N GLU A 581 " --> pdb=" O CYS A 577 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N SER A 582 " --> pdb=" O VAL A 578 " (cutoff:3.500A) Processing helix chain 'A' and resid 583 through 589 removed outlier: 3.811A pdb=" N ASN A 587 " --> pdb=" O PRO A 583 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N ILE A 588 " --> pdb=" O GLU A 584 " (cutoff:3.500A) removed outlier: 4.307A pdb=" N ILE A 589 " --> pdb=" O ALA A 585 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 583 through 589' Processing helix chain 'A' and resid 590 through 605 removed outlier: 3.503A pdb=" N LYS A 595 " --> pdb=" O GLU A 591 " (cutoff:3.500A) removed outlier: 3.557A pdb=" N SER A 596 " --> pdb=" O GLY A 592 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ILE A 597 " --> pdb=" O HIS A 593 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N LEU A 601 " --> pdb=" O ILE A 597 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N LYS A 603 " --> pdb=" O SER A 599 " (cutoff:3.500A) Processing helix chain 'A' and resid 607 through 620 removed outlier: 4.076A pdb=" N LEU A 611 " --> pdb=" O ASN A 607 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N VAL A 613 " --> pdb=" O LYS A 609 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N CYS A 618 " --> pdb=" O LEU A 614 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N VAL A 619 " --> pdb=" O CYS A 615 " (cutoff:3.500A) removed outlier: 5.309A pdb=" N CYS A 620 " --> pdb=" O SER A 616 " (cutoff:3.500A) Processing helix chain 'A' and resid 625 through 636 removed outlier: 3.507A pdb=" N GLN A 629 " --> pdb=" O VAL A 625 " (cutoff:3.500A) removed outlier: 3.919A pdb=" N HIS A 630 " --> pdb=" O ARG A 626 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N LEU A 631 " --> pdb=" O SER A 627 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N CYS A 633 " --> pdb=" O GLN A 629 " (cutoff:3.500A) Processing helix chain 'A' and resid 821 through 828 removed outlier: 4.599A pdb=" N ALA A 825 " --> pdb=" O PRO A 821 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N VAL A 826 " --> pdb=" O CYS A 822 " (cutoff:3.500A) removed outlier: 4.358A pdb=" N LEU A 827 " --> pdb=" O TYR A 823 " (cutoff:3.500A) Proline residue: A 828 - end of helix No H-bonds generated for 'chain 'A' and resid 821 through 828' Processing helix chain 'A' and resid 875 through 901 removed outlier: 4.112A pdb=" N ARG A 880 " --> pdb=" O PRO A 876 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ASN A 888 " --> pdb=" O LYS A 884 " (cutoff:3.500A) removed outlier: 4.408A pdb=" N GLU A 891 " --> pdb=" O GLU A 887 " (cutoff:3.500A) removed outlier: 5.116A pdb=" N LEU A 892 " --> pdb=" O ASN A 888 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N TRP A 893 " --> pdb=" O ILE A 889 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N LYS A 897 " --> pdb=" O TRP A 893 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N GLU A 899 " --> pdb=" O MET A 895 " (cutoff:3.500A) removed outlier: 4.717A pdb=" N LEU A 900 " --> pdb=" O ASN A 896 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N GLY A 901 " --> pdb=" O LYS A 897 " (cutoff:3.500A) Processing helix chain 'A' and resid 929 through 946 removed outlier: 4.819A pdb=" N MET A 935 " --> pdb=" O TYR A 931 " (cutoff:3.500A) removed outlier: 5.005A pdb=" N SER A 936 " --> pdb=" O ASN A 932 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU A 937 " --> pdb=" O LEU A 933 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLU A 938 " --> pdb=" O GLN A 934 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N THR A 939 " --> pdb=" O MET A 935 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N LEU A 940 " --> pdb=" O SER A 936 " (cutoff:3.500A) removed outlier: 3.740A pdb=" N THR A 942 " --> pdb=" O GLU A 938 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N LEU A 943 " --> pdb=" O THR A 939 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N LEU A 944 " --> pdb=" O LEU A 940 " (cutoff:3.500A) Processing helix chain 'A' and resid 989 through 1012 removed outlier: 3.624A pdb=" N ALA A 994 " --> pdb=" O PRO A 990 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N MET A 995 " --> pdb=" O SER A 991 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N VAL A 996 " --> pdb=" O GLN A 992 " (cutoff:3.500A) removed outlier: 4.755A pdb=" N ASP A 997 " --> pdb=" O GLU A 993 " (cutoff:3.500A) removed outlier: 4.284A pdb=" N LYS A 998 " --> pdb=" O ALA A 994 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N GLU A1001 " --> pdb=" O ASP A 997 " (cutoff:3.500A) removed outlier: 4.265A pdb=" N HIS A1004 " --> pdb=" O ALA A1000 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N ASP A1010 " --> pdb=" O VAL A1006 " (cutoff:3.500A) Processing helix chain 'A' and resid 1042 through 1061 removed outlier: 4.516A pdb=" N ASN A1046 " --> pdb=" O THR A1042 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N LEU A1050 " --> pdb=" O ASN A1046 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N VAL A1054 " --> pdb=" O LEU A1050 " (cutoff:3.500A) removed outlier: 4.578A pdb=" N ARG A1055 " --> pdb=" O ARG A1051 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N THR A1056 " --> pdb=" O GLU A1052 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N LEU A1057 " --> pdb=" O ALA A1053 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N GLY A1059 " --> pdb=" O ARG A1055 " (cutoff:3.500A) removed outlier: 4.066A pdb=" N TYR A1060 " --> pdb=" O THR A1056 " (cutoff:3.500A) Processing helix chain 'A' and resid 1220 through 1225 removed outlier: 5.699A pdb=" N LYS A1225 " --> pdb=" O VAL A1221 " (cutoff:3.500A) Processing helix chain 'A' and resid 1572 through 1577 removed outlier: 4.630A pdb=" N LYS A1576 " --> pdb=" O LYS A1572 " (cutoff:3.500A) removed outlier: 5.411A pdb=" N ASN A1577 " --> pdb=" O SER A1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1572 through 1577' Processing helix chain 'A' and resid 1640 through 1648 removed outlier: 4.232A pdb=" N LEU A1644 " --> pdb=" O ASP A1640 " (cutoff:3.500A) removed outlier: 4.735A pdb=" N THR A1645 " --> pdb=" O ILE A1641 " (cutoff:3.500A) removed outlier: 5.427A pdb=" N GLU A1646 " --> pdb=" O LEU A1642 " (cutoff:3.500A) removed outlier: 4.529A pdb=" N GLN A1647 " --> pdb=" O GLU A1643 " (cutoff:3.500A) removed outlier: 5.136A pdb=" N GLU A1648 " --> pdb=" O LEU A1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1640 through 1648' Processing helix chain 'A' and resid 1649 through 1666 removed outlier: 3.864A pdb=" N HIS A1654 " --> pdb=" O LEU A1650 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N LEU A1660 " --> pdb=" O HIS A1656 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N SER A1662 " --> pdb=" O LEU A1658 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N CYS A1665 " --> pdb=" O TYR A1661 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N ALA A1666 " --> pdb=" O SER A1662 " (cutoff:3.500A) Processing helix chain 'A' and resid 1669 through 1680 removed outlier: 3.631A pdb=" N HIS A1674 " --> pdb=" O HIS A1670 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N CYS A1677 " --> pdb=" O ALA A1673 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N SER A1678 " --> pdb=" O HIS A1674 " (cutoff:3.500A) removed outlier: 4.112A pdb=" N HIS A1679 " --> pdb=" O ALA A1675 " (cutoff:3.500A) Processing helix chain 'A' and resid 1681 through 1691 removed outlier: 4.275A pdb=" N LEU A1685 " --> pdb=" O ASP A1681 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N TYR A1687 " --> pdb=" O PRO A1683 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N GLU A1690 " --> pdb=" O LEU A1686 " (cutoff:3.500A) Processing helix chain 'A' and resid 1695 through 1710 removed outlier: 3.931A pdb=" N ALA A1700 " --> pdb=" O GLY A1696 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ASP A1708 " --> pdb=" O ASP A1704 " (cutoff:3.500A) Processing helix chain 'A' and resid 1711 through 1723 removed outlier: 4.662A pdb=" N THR A1716 " --> pdb=" O SER A1712 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N ALA A1717 " --> pdb=" O SER A1713 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N LEU A1719 " --> pdb=" O ALA A1715 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N MET A1721 " --> pdb=" O ALA A1717 " (cutoff:3.500A) removed outlier: 4.649A pdb=" N ASN A1722 " --> pdb=" O ARG A1718 " (cutoff:3.500A) removed outlier: 5.815A pdb=" N ASN A1723 " --> pdb=" O LEU A1719 " (cutoff:3.500A) Processing helix chain 'A' and resid 1730 through 1736 removed outlier: 3.943A pdb=" N LYS A1734 " --> pdb=" O THR A1730 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N SER A1735 " --> pdb=" O GLU A1731 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N ILE A1736 " --> pdb=" O GLU A1732 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1730 through 1736' Processing helix chain 'A' and resid 1771 through 1777 removed outlier: 4.807A pdb=" N GLN A1777 " --> pdb=" O ASN A1773 " (cutoff:3.500A) Processing helix chain 'A' and resid 1783 through 1804 removed outlier: 3.502A pdb=" N LEU A1787 " --> pdb=" O PRO A1783 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ALA A1789 " --> pdb=" O ASP A1785 " (cutoff:3.500A) removed outlier: 4.518A pdb=" N ILE A1792 " --> pdb=" O LYS A1788 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N GLN A1793 " --> pdb=" O ALA A1789 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N GLU A1801 " --> pdb=" O GLU A1797 " (cutoff:3.500A) removed outlier: 5.911A pdb=" N LEU A1804 " --> pdb=" O GLN A1800 " (cutoff:3.500A) Processing helix chain 'A' and resid 1813 through 1832 removed outlier: 4.191A pdb=" N LEU A1817 " --> pdb=" O THR A1813 " (cutoff:3.500A) Proline residue: A1820 - end of helix removed outlier: 4.037A pdb=" N LEU A1824 " --> pdb=" O PRO A1820 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N MET A1831 " --> pdb=" O THR A1827 " (cutoff:3.500A) removed outlier: 4.845A pdb=" N GLY A1832 " --> pdb=" O LEU A1828 " (cutoff:3.500A) Processing helix chain 'A' and resid 1835 through 1847 removed outlier: 3.863A pdb=" N HIS A1841 " --> pdb=" O GLU A1837 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N GLN A1844 " --> pdb=" O LYS A1840 " (cutoff:3.500A) removed outlier: 4.930A pdb=" N LEU A1845 " --> pdb=" O HIS A1841 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N ILE A1846 " --> pdb=" O ILE A1842 " (cutoff:3.500A) Processing helix chain 'A' and resid 1901 through 1952 removed outlier: 4.452A pdb=" N GLN A1906 " --> pdb=" O PRO A1902 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N LEU A1909 " --> pdb=" O LEU A1905 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N TYR A1913 " --> pdb=" O LEU A1909 " (cutoff:3.500A) removed outlier: 4.009A pdb=" N ASP A1916 " --> pdb=" O GLN A1912 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N GLN A1918 " --> pdb=" O LEU A1914 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N ARG A1920 " --> pdb=" O ASP A1916 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N ALA A1928 " --> pdb=" O GLU A1924 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N ASP A1931 " --> pdb=" O VAL A1927 " (cutoff:3.500A) removed outlier: 5.150A pdb=" N ASP A1932 " --> pdb=" O ALA A1928 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N PHE A1933 " --> pdb=" O PHE A1929 " (cutoff:3.500A) removed outlier: 4.389A pdb=" N VAL A1934 " --> pdb=" O SER A1930 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N LEU A1937 " --> pdb=" O PHE A1933 " (cutoff:3.500A) removed outlier: 4.089A pdb=" N ASP A1939 " --> pdb=" O ALA A1935 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N ASN A1940 " --> pdb=" O LYS A1936 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N GLN A1941 " --> pdb=" O LEU A1937 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ARG A1942 " --> pdb=" O GLN A1938 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N ARG A1944 " --> pdb=" O ASN A1940 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N VAL A1948 " --> pdb=" O ARG A1944 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N MET A1949 " --> pdb=" O TYR A1945 " (cutoff:3.500A) Processing helix chain 'A' and resid 1990 through 1997 removed outlier: 5.326A pdb=" N ARG A1994 " --> pdb=" O PRO A1990 " (cutoff:3.500A) removed outlier: 5.586A pdb=" N GLN A1996 " --> pdb=" O GLU A1992 " (cutoff:3.500A) Processing helix chain 'A' and resid 1999 through 2011 removed outlier: 4.081A pdb=" N ILE A2010 " --> pdb=" O THR A2006 " (cutoff:3.500A) removed outlier: 5.095A pdb=" N GLU A2011 " --> pdb=" O HIS A2007 " (cutoff:3.500A) Processing helix chain 'A' and resid 2024 through 2038 removed outlier: 4.691A pdb=" N GLY A2028 " --> pdb=" O LEU A2024 " (cutoff:3.500A) removed outlier: 4.640A pdb=" N ARG A2029 " --> pdb=" O THR A2025 " (cutoff:3.500A) removed outlier: 4.186A pdb=" N LEU A2030 " --> pdb=" O ILE A2026 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N LEU A2031 " --> pdb=" O ARG A2027 " (cutoff:3.500A) removed outlier: 5.181A pdb=" N SER A2032 " --> pdb=" O GLY A2028 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N THR A2038 " --> pdb=" O VAL A2034 " (cutoff:3.500A) Processing helix chain 'A' and resid 2058 through 2074 removed outlier: 3.971A pdb=" N LEU A2062 " --> pdb=" O THR A2058 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N SER A2064 " --> pdb=" O GLN A2060 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N VAL A2068 " --> pdb=" O SER A2064 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N ALA A2071 " --> pdb=" O MET A2067 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N SER A2074 " --> pdb=" O TRP A2070 " (cutoff:3.500A) Processing helix chain 'A' and resid 2078 through 2095 removed outlier: 3.790A pdb=" N VAL A2082 " --> pdb=" O ASP A2078 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ARG A2083 " --> pdb=" O PRO A2079 " (cutoff:3.500A) removed outlier: 4.051A pdb=" N LEU A2088 " --> pdb=" O ALA A2084 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N GLN A2092 " --> pdb=" O LEU A2088 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N TYR A2093 " --> pdb=" O LEU A2089 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N GLY A2095 " --> pdb=" O ARG A2091 " (cutoff:3.500A) Processing helix chain 'A' and resid 2096 through 2106 removed outlier: 3.537A pdb=" N ALA A2102 " --> pdb=" O GLY A2098 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N LEU A2103 " --> pdb=" O LEU A2099 " (cutoff:3.500A) Proline residue: A2104 - end of helix Processing helix chain 'A' and resid 2110 through 2132 removed outlier: 3.655A pdb=" N VAL A2114 " --> pdb=" O ASN A2110 " (cutoff:3.500A) removed outlier: 4.753A pdb=" N GLU A2115 " --> pdb=" O GLY A2111 " (cutoff:3.500A) removed outlier: 5.187A pdb=" N ASP A2116 " --> pdb=" O VAL A2112 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N ILE A2118 " --> pdb=" O VAL A2114 " (cutoff:3.500A) removed outlier: 4.856A pdb=" N ASN A2119 " --> pdb=" O GLU A2115 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N GLN A2126 " --> pdb=" O ALA A2122 " (cutoff:3.500A) removed outlier: 3.899A pdb=" N ILE A2127 " --> pdb=" O SER A2123 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N LEU A2131 " --> pdb=" O ILE A2127 " (cutoff:3.500A) removed outlier: 5.004A pdb=" N SER A2132 " --> pdb=" O ARG A2128 " (cutoff:3.500A) Processing helix chain 'A' and resid 2140 through 2153 removed outlier: 3.856A pdb=" N ARG A2145 " --> pdb=" O LYS A2141 " (cutoff:3.500A) Processing helix chain 'A' and resid 2159 through 2167 removed outlier: 3.621A pdb=" N ARG A2164 " --> pdb=" O PRO A2160 " (cutoff:3.500A) removed outlier: 4.242A pdb=" N GLY A2167 " --> pdb=" O MET A2163 " (cutoff:3.500A) Processing helix chain 'A' and resid 2168 through 2181 removed outlier: 3.966A pdb=" N VAL A2172 " --> pdb=" O MET A2168 " (cutoff:3.500A) removed outlier: 3.887A pdb=" N MET A2173 " --> pdb=" O HIS A2169 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N ASN A2178 " --> pdb=" O GLU A2174 " (cutoff:3.500A) removed outlier: 3.540A pdb=" N VAL A2179 " --> pdb=" O VAL A2175 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N GLY A2181 " --> pdb=" O VAL A2177 " (cutoff:3.500A) Processing helix chain 'A' and resid 2191 through 2209 removed outlier: 4.225A pdb=" N ALA A2195 " --> pdb=" O PRO A2191 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N ASN A2196 " --> pdb=" O LYS A2192 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N ARG A2199 " --> pdb=" O ALA A2195 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N PHE A2200 " --> pdb=" O ASN A2196 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N LEU A2201 " --> pdb=" O CYS A2197 " (cutoff:3.500A) removed outlier: 4.122A pdb=" N ARG A2206 " --> pdb=" O CYS A2202 " (cutoff:3.500A) removed outlier: 4.274A pdb=" N ILE A2207 " --> pdb=" O TYR A2203 " (cutoff:3.500A) removed outlier: 4.684A pdb=" N SER A2208 " --> pdb=" O PHE A2204 " (cutoff:3.500A) removed outlier: 5.283A pdb=" N ARG A2209 " --> pdb=" O CYS A2205 " (cutoff:3.500A) Processing helix chain 'A' and resid 2210 through 2220 removed outlier: 4.340A pdb=" N ASP A2217 " --> pdb=" O LYS A2213 " (cutoff:3.500A) removed outlier: 5.023A pdb=" N HIS A2218 " --> pdb=" O ALA A2214 " (cutoff:3.500A) removed outlier: 4.521A pdb=" N LEU A2219 " --> pdb=" O MET A2215 " (cutoff:3.500A) removed outlier: 4.966A pdb=" N SER A2220 " --> pdb=" O PHE A2216 " (cutoff:3.500A) Processing helix chain 'A' and resid 2221 through 2226 removed outlier: 4.249A pdb=" N ASN A2225 " --> pdb=" O TYR A2221 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N SER A2226 " --> pdb=" O LEU A2222 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 2221 through 2226' Processing helix chain 'A' and resid 2239 through 2249 removed outlier: 4.476A pdb=" N VAL A2243 " --> pdb=" O THR A2239 " (cutoff:3.500A) removed outlier: 4.998A pdb=" N ALA A2244 " --> pdb=" O PRO A2240 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N VAL A2248 " --> pdb=" O ALA A2244 " (cutoff:3.500A) Processing helix chain 'A' and resid 2251 through 2258 removed outlier: 4.060A pdb=" N ALA A2255 " --> pdb=" O ASN A2251 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N LEU A2258 " --> pdb=" O LEU A2254 " (cutoff:3.500A) Processing helix chain 'A' and resid 2259 through 2275 removed outlier: 3.864A pdb=" N LEU A2263 " --> pdb=" O ARG A2259 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N LYS A2265 " --> pdb=" O PRO A2261 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N VAL A2266 " --> pdb=" O ASP A2262 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N VAL A2267 " --> pdb=" O LEU A2263 " (cutoff:3.500A) removed outlier: 3.648A pdb=" N ALA A2271 " --> pdb=" O VAL A2267 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N GLY A2274 " --> pdb=" O LEU A2270 " (cutoff:3.500A) removed outlier: 5.819A pdb=" N LEU A2275 " --> pdb=" O ALA A2271 " (cutoff:3.500A) Processing helix chain 'A' and resid 2293 through 2308 removed outlier: 5.676A pdb=" N GLU A2297 " --> pdb=" O PRO A2293 " (cutoff:3.500A) removed outlier: 4.484A pdb=" N ARG A2298 " --> pdb=" O VAL A2294 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N TYR A2299 " --> pdb=" O GLU A2295 " (cutoff:3.500A) removed outlier: 3.766A pdb=" N ASP A2301 " --> pdb=" O GLU A2297 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N PHE A2302 " --> pdb=" O ARG A2298 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N LEU A2303 " --> pdb=" O TYR A2299 " (cutoff:3.500A) removed outlier: 4.295A pdb=" N PHE A2305 " --> pdb=" O ASP A2301 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N VAL A2307 " --> pdb=" O LEU A2303 " (cutoff:3.500A) Processing helix chain 'A' and resid 2314 through 2329 removed outlier: 4.516A pdb=" N VAL A2321 " --> pdb=" O ASN A2317 " (cutoff:3.500A) removed outlier: 4.597A pdb=" N VAL A2322 " --> pdb=" O ALA A2318 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N ARG A2323 " --> pdb=" O ASN A2319 " (cutoff:3.500A) removed outlier: 5.479A pdb=" N LEU A2324 " --> pdb=" O VAL A2320 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N ILE A2326 " --> pdb=" O VAL A2322 " (cutoff:3.500A) removed outlier: 5.140A pdb=" N ARG A2327 " --> pdb=" O ARG A2323 " (cutoff:3.500A) removed outlier: 3.774A pdb=" N ARG A2328 " --> pdb=" O LEU A2324 " (cutoff:3.500A) Proline residue: A2329 - end of helix Processing helix chain 'A' and resid 2343 through 2354 removed outlier: 3.863A pdb=" N ALA A2347 " --> pdb=" O GLY A2343 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N MET A2348 " --> pdb=" O LEU A2344 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N GLU A2349 " --> pdb=" O LEU A2345 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N GLU A2350 " --> pdb=" O ALA A2346 " (cutoff:3.500A) removed outlier: 4.843A pdb=" N ILE A2352 " --> pdb=" O MET A2348 " (cutoff:3.500A) removed outlier: 4.295A pdb=" N LYS A2353 " --> pdb=" O GLU A2349 " (cutoff:3.500A) Processing helix chain 'A' and resid 2387 through 2404 removed outlier: 4.168A pdb=" N THR A2391 " --> pdb=" O ASN A2387 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N TYR A2393 " --> pdb=" O ILE A2389 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ALA A2394 " --> pdb=" O MET A2390 " (cutoff:3.500A) removed outlier: 4.800A pdb=" N ASP A2398 " --> pdb=" O ALA A2394 " (cutoff:3.500A) removed outlier: 4.233A pdb=" N ALA A2404 " --> pdb=" O LEU A2400 " (cutoff:3.500A) Processing helix chain 'A' and resid 2408 through 2413 removed outlier: 4.023A pdb=" N ALA A2412 " --> pdb=" O HIS A2408 " (cutoff:3.500A) Processing helix chain 'A' and resid 2416 through 2427 removed outlier: 3.885A pdb=" N ILE A2420 " --> pdb=" O GLU A2416 " (cutoff:3.500A) removed outlier: 3.645A pdb=" N ARG A2421 " --> pdb=" O ALA A2417 " (cutoff:3.500A) removed outlier: 4.112A pdb=" N ARG A2425 " --> pdb=" O ARG A2421 " (cutoff:3.500A) Processing helix chain 'A' and resid 2432 through 2437 removed outlier: 4.447A pdb=" N ILE A2437 " --> pdb=" O LEU A2433 " (cutoff:3.500A) Processing helix chain 'A' and resid 2462 through 2476 removed outlier: 4.637A pdb=" N LYS A2466 " --> pdb=" O CYS A2462 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N LEU A2471 " --> pdb=" O ALA A2467 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N PHE A2472 " --> pdb=" O ALA A2468 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N VAL A2476 " --> pdb=" O PHE A2472 " (cutoff:3.500A) Processing helix chain 'A' and resid 2481 through 2489 removed outlier: 5.243A pdb=" N LEU A2485 " --> pdb=" O VAL A2481 " (cutoff:3.500A) removed outlier: 4.088A pdb=" N LEU A2486 " --> pdb=" O GLN A2482 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N LEU A2488 " --> pdb=" O PHE A2484 " (cutoff:3.500A) removed outlier: 3.958A pdb=" N LEU A2489 " --> pdb=" O LEU A2485 " (cutoff:3.500A) Processing helix chain 'A' and resid 2492 through 2499 removed outlier: 3.943A pdb=" N ASP A2496 " --> pdb=" O GLY A2492 " (cutoff:3.500A) removed outlier: 4.539A pdb=" N LEU A2497 " --> pdb=" O PHE A2493 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N ARG A2498 " --> pdb=" O LEU A2494 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N ALA A2499 " --> pdb=" O PRO A2495 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 2492 through 2499' Processing helix chain 'A' and resid 2511 through 2529 removed outlier: 5.137A pdb=" N ALA A2516 " --> pdb=" O ASP A2512 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LEU A2517 " --> pdb=" O MET A2513 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N ASN A2518 " --> pdb=" O ALA A2514 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N ARG A2519 " --> pdb=" O LEU A2515 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N LEU A2521 " --> pdb=" O LEU A2517 " (cutoff:3.500A) removed outlier: 5.253A pdb=" N CYS A2522 " --> pdb=" O ASN A2518 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N THR A2523 " --> pdb=" O ARG A2519 " (cutoff:3.500A) removed outlier: 5.292A pdb=" N VAL A2525 " --> pdb=" O LEU A2521 " (cutoff:3.500A) Proline residue: A2527 - end of helix Processing helix chain 'A' and resid 2538 through 2552 removed outlier: 4.070A pdb=" N HIS A2542 " --> pdb=" O GLY A2538 " (cutoff:3.500A) removed outlier: 4.693A pdb=" N ILE A2546 " --> pdb=" O HIS A2542 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N ASP A2547 " --> pdb=" O ALA A2543 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N LEU A2549 " --> pdb=" O LEU A2545 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N LEU A2550 " --> pdb=" O ILE A2546 " (cutoff:3.500A) removed outlier: 4.090A pdb=" N THR A2552 " --> pdb=" O SER A2548 " (cutoff:3.500A) Processing helix chain 'A' and resid 2561 through 2576 removed outlier: 4.238A pdb=" N ALA A2565 " --> pdb=" O SER A2561 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N GLN A2566 " --> pdb=" O LEU A2562 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ARG A2567 " --> pdb=" O THR A2563 " (cutoff:3.500A) removed outlier: 4.006A pdb=" N GLU A2571 " --> pdb=" O ARG A2567 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N VAL A2572 " --> pdb=" O ASP A2568 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N LEU A2574 " --> pdb=" O ILE A2570 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N LEU A2575 " --> pdb=" O GLU A2571 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N SER A2576 " --> pdb=" O VAL A2572 " (cutoff:3.500A) Processing helix chain 'A' and resid 2584 through 2601 removed outlier: 3.950A pdb=" N HIS A2588 " --> pdb=" O SER A2584 " (cutoff:3.500A) removed outlier: 4.973A pdb=" N ARG A2591 " --> pdb=" O GLN A2587 " (cutoff:3.500A) removed outlier: 4.733A pdb=" N ARG A2592 " --> pdb=" O HIS A2588 " (cutoff:3.500A) removed outlier: 5.299A pdb=" N LEU A2593 " --> pdb=" O LEU A2589 " (cutoff:3.500A) removed outlier: 6.367A pdb=" N VAL A2594 " --> pdb=" O LEU A2590 " (cutoff:3.500A) removed outlier: 4.635A pdb=" N PHE A2595 " --> pdb=" O ARG A2591 " (cutoff:3.500A) removed outlier: 5.153A pdb=" N ASP A2596 " --> pdb=" O ARG A2592 " (cutoff:3.500A) Proline residue: A2598 - end of helix removed outlier: 5.244A pdb=" N ASN A2601 " --> pdb=" O VAL A2597 " (cutoff:3.500A) Processing helix chain 'A' and resid 2605 through 2627 removed outlier: 4.663A pdb=" N THR A2612 " --> pdb=" O LEU A2608 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N HIS A2614 " --> pdb=" O LEU A2610 " (cutoff:3.500A) removed outlier: 5.009A pdb=" N TYR A2615 " --> pdb=" O LEU A2611 " (cutoff:3.500A) removed outlier: 4.699A pdb=" N ARG A2617 " --> pdb=" O ASN A2613 " (cutoff:3.500A) removed outlier: 4.921A pdb=" N CYS A2618 " --> pdb=" O HIS A2614 " (cutoff:3.500A) removed outlier: 4.155A pdb=" N LYS A2620 " --> pdb=" O GLU A2616 " (cutoff:3.500A) removed outlier: 4.784A pdb=" N TYR A2621 " --> pdb=" O ARG A2617 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N TYR A2622 " --> pdb=" O CYS A2618 " (cutoff:3.500A) removed outlier: 4.522A pdb=" N CYS A2623 " --> pdb=" O TRP A2619 " (cutoff:3.500A) Proline residue: A2625 - end of helix Processing helix chain 'A' and resid 2635 through 2653 removed outlier: 3.606A pdb=" N LEU A2639 " --> pdb=" O SER A2635 " (cutoff:3.500A) removed outlier: 4.582A pdb=" N HIS A2640 " --> pdb=" O GLU A2636 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N LEU A2641 " --> pdb=" O GLU A2637 " (cutoff:3.500A) removed outlier: 4.550A pdb=" N SER A2642 " --> pdb=" O GLU A2638 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ARG A2643 " --> pdb=" O LEU A2639 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N LEU A2645 " --> pdb=" O LEU A2641 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N PHE A2646 " --> pdb=" O SER A2642 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N TRP A2647 " --> pdb=" O ARG A2643 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N GLY A2648 " --> pdb=" O LYS A2644 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N ASP A2651 " --> pdb=" O TRP A2647 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N ALA A2652 " --> pdb=" O GLY A2648 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N LEU A2653 " --> pdb=" O ILE A2649 " (cutoff:3.500A) Processing helix chain 'A' and resid 2660 through 2678 removed outlier: 4.807A pdb=" N LEU A2665 " --> pdb=" O GLU A2661 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N ALA A2666 " --> pdb=" O LEU A2662 " (cutoff:3.500A) Proline residue: A2668 - end of helix removed outlier: 3.595A pdb=" N SER A2671 " --> pdb=" O LEU A2667 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N LEU A2677 " --> pdb=" O VAL A2673 " (cutoff:3.500A) Proline residue: A2678 - end of helix Processing helix chain 'A' and resid 2716 through 2738 removed outlier: 4.232A pdb=" N TYR A2720 " --> pdb=" O GLU A2716 " (cutoff:3.500A) removed outlier: 4.113A pdb=" N PHE A2721 " --> pdb=" O LYS A2717 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N ASN A2723 " --> pdb=" O GLU A2719 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N LYS A2724 " --> pdb=" O TYR A2720 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ALA A2726 " --> pdb=" O ILE A2722 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N HIS A2730 " --> pdb=" O ALA A2726 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ASP A2731 " --> pdb=" O GLU A2727 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N ASP A2736 " --> pdb=" O LYS A2732 " (cutoff:3.500A) removed outlier: 4.585A pdb=" N LYS A2737 " --> pdb=" O TRP A2733 " (cutoff:3.500A) Processing helix chain 'A' and resid 2769 through 2786 Proline residue: A2775 - end of helix removed outlier: 3.590A pdb=" N SER A2779 " --> pdb=" O PRO A2775 " (cutoff:3.500A) removed outlier: 5.016A pdb=" N THR A2782 " --> pdb=" O GLU A2778 " (cutoff:3.500A) removed outlier: 5.180A pdb=" N MET A2783 " --> pdb=" O SER A2779 " (cutoff:3.500A) removed outlier: 4.468A pdb=" N LEU A2784 " --> pdb=" O LEU A2780 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N ALA A2785 " --> pdb=" O LYS A2781 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N TRP A2786 " --> pdb=" O THR A2782 " (cutoff:3.500A) Processing helix chain 'A' and resid 2836 through 2862 removed outlier: 4.735A pdb=" N ALA A2840 " --> pdb=" O ARG A2836 " (cutoff:3.500A) removed outlier: 4.165A pdb=" N MET A2841 " --> pdb=" O ASP A2837 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N MET A2844 " --> pdb=" O ALA A2840 " (cutoff:3.500A) removed outlier: 4.525A pdb=" N ALA A2854 " --> pdb=" O HIS A2850 " (cutoff:3.500A) removed outlier: 4.634A pdb=" N LYS A2855 " --> pdb=" O ASN A2851 " (cutoff:3.500A) removed outlier: 4.856A pdb=" N LYS A2858 " --> pdb=" O ALA A2854 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N LEU A2859 " --> pdb=" O LYS A2855 " (cutoff:3.500A) removed outlier: 4.226A pdb=" N GLU A2860 " --> pdb=" O LYS A2856 " (cutoff:3.500A) removed outlier: 4.756A pdb=" N LEU A2861 " --> pdb=" O LYS A2857 " (cutoff:3.500A) removed outlier: 5.056A pdb=" N GLU A2862 " --> pdb=" O LYS A2858 " (cutoff:3.500A) Processing helix chain 'A' and resid 2881 through 2901 removed outlier: 4.684A pdb=" N LYS A2885 " --> pdb=" O LYS A2881 " (cutoff:3.500A) removed outlier: 4.150A pdb=" N ASP A2886 " --> pdb=" O GLU A2882 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N GLU A2888 " --> pdb=" O ALA A2884 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N LYS A2889 " --> pdb=" O LYS A2885 " (cutoff:3.500A) removed outlier: 3.930A pdb=" N ALA A2890 " --> pdb=" O ASP A2886 " (cutoff:3.500A) removed outlier: 4.385A pdb=" N GLN A2891 " --> pdb=" O ARG A2887 " (cutoff:3.500A) removed outlier: 4.393A pdb=" N ASP A2892 " --> pdb=" O GLU A2888 " (cutoff:3.500A) removed outlier: 4.261A pdb=" N ILE A2893 " --> pdb=" O LYS A2889 " (cutoff:3.500A) removed outlier: 5.103A pdb=" N LEU A2894 " --> pdb=" O ALA A2890 " (cutoff:3.500A) removed outlier: 4.114A pdb=" N LEU A2897 " --> pdb=" O ILE A2893 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N GLN A2898 " --> pdb=" O LEU A2894 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N ILE A2899 " --> pdb=" O LYS A2895 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N ASN A2900 " --> pdb=" O PHE A2896 " (cutoff:3.500A) Processing helix chain 'A' and resid 2982 through 3004 removed outlier: 3.972A pdb=" N ARG A2989 " --> pdb=" O SER A2985 " (cutoff:3.500A) Proline residue: A2990 - end of helix removed outlier: 3.536A pdb=" N SER A2998 " --> pdb=" O GLY A2994 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N GLU A3001 " --> pdb=" O ALA A2997 " (cutoff:3.500A) removed outlier: 4.755A pdb=" N LYS A3002 " --> pdb=" O SER A2998 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N GLU A3003 " --> pdb=" O ASN A2999 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N MET A3004 " --> pdb=" O LYS A3000 " (cutoff:3.500A) Processing helix chain 'A' and resid 3009 through 3028 removed outlier: 3.894A pdb=" N GLY A3013 " --> pdb=" O PHE A3009 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N LEU A3015 " --> pdb=" O LYS A3011 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N HIS A3018 " --> pdb=" O VAL A3014 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ARG A3019 " --> pdb=" O LEU A3015 " (cutoff:3.500A) removed outlier: 4.655A pdb=" N ILE A3020 " --> pdb=" O VAL A3016 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N SER A3021 " --> pdb=" O ARG A3017 " (cutoff:3.500A) removed outlier: 4.444A pdb=" N LEU A3022 " --> pdb=" O HIS A3018 " (cutoff:3.500A) removed outlier: 5.499A pdb=" N PHE A3023 " --> pdb=" O ARG A3019 " (cutoff:3.500A) removed outlier: 4.273A pdb=" N GLY A3024 " --> pdb=" O ILE A3020 " (cutoff:3.500A) Processing helix chain 'A' and resid 3035 through 3052 removed outlier: 4.496A pdb=" N GLN A3039 " --> pdb=" O HIS A3035 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N ASP A3042 " --> pdb=" O GLY A3038 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N ARG A3044 " --> pdb=" O THR A3040 " (cutoff:3.500A) removed outlier: 4.697A pdb=" N THR A3045 " --> pdb=" O LEU A3041 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N VAL A3046 " --> pdb=" O ASP A3042 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N MET A3047 " --> pdb=" O ALA A3043 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N THR A3049 " --> pdb=" O THR A3045 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N GLU A3052 " --> pdb=" O LYS A3048 " (cutoff:3.500A) Processing helix chain 'A' and resid 3062 through 3082 removed outlier: 4.743A pdb=" N ALA A3066 " --> pdb=" O LEU A3062 " (cutoff:3.500A) removed outlier: 5.788A pdb=" N ASP A3068 " --> pdb=" O ASN A3064 " (cutoff:3.500A) removed outlier: 7.554A pdb=" N LEU A3069 " --> pdb=" O ALA A3065 " (cutoff:3.500A) removed outlier: 5.715A pdb=" N GLU A3070 " --> pdb=" O ALA A3066 " (cutoff:3.500A) removed outlier: 3.861A pdb=" N THR A3072 " --> pdb=" O ASP A3068 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N MET A3073 " --> pdb=" O LEU A3069 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N GLU A3074 " --> pdb=" O GLU A3070 " (cutoff:3.500A) removed outlier: 3.681A pdb=" N ASN A3075 " --> pdb=" O LYS A3071 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N LYS A3077 " --> pdb=" O MET A3073 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N PHE A3081 " --> pdb=" O LYS A3077 " (cutoff:3.500A) removed outlier: 4.904A pdb=" N THR A3082 " --> pdb=" O GLN A3078 " (cutoff:3.500A) Processing helix chain 'A' and resid 3102 through 3114 removed outlier: 5.216A pdb=" N LEU A3106 " --> pdb=" O LEU A3102 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N SER A3107 " --> pdb=" O LEU A3103 " (cutoff:3.500A) removed outlier: 4.394A pdb=" N SER A3108 " --> pdb=" O PRO A3104 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N LEU A3109 " --> pdb=" O MET A3105 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N PHE A3110 " --> pdb=" O LEU A3106 " (cutoff:3.500A) Processing helix chain 'A' and resid 3124 through 3142 removed outlier: 3.850A pdb=" N GLN A3128 " --> pdb=" O LEU A3124 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N SER A3130 " --> pdb=" O ASP A3126 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N ARG A3133 " --> pdb=" O VAL A3129 " (cutoff:3.500A) removed outlier: 4.616A pdb=" N LEU A3138 " --> pdb=" O ILE A3134 " (cutoff:3.500A) removed outlier: 4.990A pdb=" N TYR A3139 " --> pdb=" O LEU A3135 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N ALA A3140 " --> pdb=" O THR A3136 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N LEU A3141 " --> pdb=" O SER A3137 " (cutoff:3.500A) Processing helix chain 'A' and resid 3150 through 3166 removed outlier: 4.645A pdb=" N SER A3154 " --> pdb=" O GLU A3150 " (cutoff:3.500A) removed outlier: 4.578A pdb=" N ALA A3155 " --> pdb=" O ARG A3151 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N LEU A3156 " --> pdb=" O GLN A3152 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N GLU A3158 " --> pdb=" O SER A3154 " (cutoff:3.500A) removed outlier: 6.419A pdb=" N GLY A3165 " --> pdb=" O ALA A3161 " (cutoff:3.500A) removed outlier: 4.576A pdb=" N ALA A3166 " --> pdb=" O ALA A3162 " (cutoff:3.500A) Processing helix chain 'A' and resid 3170 through 3182 removed outlier: 3.990A pdb=" N THR A3174 " --> pdb=" O ALA A3170 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N LEU A3176 " --> pdb=" O LEU A3172 " (cutoff:3.500A) removed outlier: 4.682A pdb=" N ASP A3177 " --> pdb=" O GLU A3173 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N LYS A3178 " --> pdb=" O THR A3174 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ASN A3180 " --> pdb=" O LEU A3176 " (cutoff:3.500A) removed outlier: 5.043A pdb=" N ILE A3181 " --> pdb=" O ASP A3177 " (cutoff:3.500A) removed outlier: 4.663A pdb=" N TYR A3182 " --> pdb=" O LYS A3178 " (cutoff:3.500A) Processing helix chain 'A' and resid 3591 through 3606 removed outlier: 3.802A pdb=" N GLN A3595 " --> pdb=" O LEU A3591 " (cutoff:3.500A) removed outlier: 4.438A pdb=" N ARG A3596 " --> pdb=" O LEU A3592 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N LYS A3597 " --> pdb=" O SER A3593 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N ALA A3599 " --> pdb=" O GLN A3595 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N ALA A3602 " --> pdb=" O ARG A3598 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N ARG A3605 " --> pdb=" O VAL A3601 " (cutoff:3.500A) Processing helix chain 'A' and resid 3613 through 3632 removed outlier: 3.949A pdb=" N ALA A3617 " --> pdb=" O PRO A3613 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N LYS A3627 " --> pdb=" O GLN A3623 " (cutoff:3.500A) removed outlier: 4.947A pdb=" N ILE A3630 " --> pdb=" O GLU A3626 " (cutoff:3.500A) removed outlier: 5.579A pdb=" N GLU A3631 " --> pdb=" O LYS A3627 " (cutoff:3.500A) removed outlier: 5.521A pdb=" N THR A3632 " --> pdb=" O SER A3628 " (cutoff:3.500A) Processing helix chain 'A' and resid 3637 through 3647 removed outlier: 4.188A pdb=" N ILE A3642 " --> pdb=" O GLU A3638 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N ALA A3646 " --> pdb=" O ILE A3642 " (cutoff:3.500A) removed outlier: 4.535A pdb=" N LYS A3647 " --> pdb=" O GLU A3643 " (cutoff:3.500A) Processing helix chain 'A' and resid 3663 through 3678 removed outlier: 3.701A pdb=" N LEU A3668 " --> pdb=" O PRO A3664 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N THR A3678 " --> pdb=" O ARG A3674 " (cutoff:3.500A) Processing helix chain 'A' and resid 3686 through 3700 removed outlier: 3.621A pdb=" N MET A3690 " --> pdb=" O ASP A3686 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N ALA A3691 " --> pdb=" O PHE A3687 " (cutoff:3.500A) removed outlier: 5.277A pdb=" N ASP A3694 " --> pdb=" O MET A3690 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ILE A3695 " --> pdb=" O ALA A3691 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N MET A3696 " --> pdb=" O TYR A3692 " (cutoff:3.500A) removed outlier: 4.941A pdb=" N ALA A3697 " --> pdb=" O ALA A3693 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N SER A3699 " --> pdb=" O ILE A3695 " (cutoff:3.500A) removed outlier: 5.590A pdb=" N CYS A3700 " --> pdb=" O MET A3696 " (cutoff:3.500A) Processing helix chain 'A' and resid 3714 through 3734 removed outlier: 4.858A pdb=" N LYS A3718 " --> pdb=" O SER A3714 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N LYS A3722 " --> pdb=" O LYS A3718 " (cutoff:3.500A) removed outlier: 4.195A pdb=" N LEU A3725 " --> pdb=" O GLU A3721 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N TYR A3727 " --> pdb=" O GLN A3723 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N ALA A3730 " --> pdb=" O LEU A3726 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N LEU A3732 " --> pdb=" O GLN A3728 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N ASP A3734 " --> pdb=" O ALA A3730 " (cutoff:3.500A) Processing helix chain 'A' and resid 3736 through 3749 removed outlier: 3.508A pdb=" N MET A3740 " --> pdb=" O GLY A3736 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N VAL A3741 " --> pdb=" O ALA A3737 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N LEU A3742 " --> pdb=" O ALA A3738 " (cutoff:3.500A) removed outlier: 4.100A pdb=" N THR A3744 " --> pdb=" O MET A3740 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N ILE A3745 " --> pdb=" O VAL A3741 " (cutoff:3.500A) removed outlier: 4.213A pdb=" N SER A3746 " --> pdb=" O LEU A3742 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N SER A3748 " --> pdb=" O THR A3744 " (cutoff:3.500A) removed outlier: 4.842A pdb=" N LYS A3749 " --> pdb=" O ILE A3745 " (cutoff:3.500A) Processing helix chain 'A' and resid 3753 through 3768 removed outlier: 3.687A pdb=" N ALA A3758 " --> pdb=" O PRO A3754 " (cutoff:3.500A) removed outlier: 5.443A pdb=" N LYS A3761 " --> pdb=" O ALA A3757 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N LEU A3762 " --> pdb=" O ALA A3758 " (cutoff:3.500A) removed outlier: 4.098A pdb=" N GLY A3763 " --> pdb=" O THR A3759 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N ILE A3766 " --> pdb=" O LEU A3762 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N LEU A3767 " --> pdb=" O GLY A3763 " (cutoff:3.500A) Processing helix chain 'A' and resid 3771 through 3786 removed outlier: 3.754A pdb=" N GLN A3775 " --> pdb=" O ASN A3771 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N GLN A3776 " --> pdb=" O SER A3772 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N LEU A3779 " --> pdb=" O GLN A3775 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU A3782 " --> pdb=" O MET A3778 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N LYS A3785 " --> pdb=" O TYR A3781 " (cutoff:3.500A) removed outlier: 5.011A pdb=" N LYS A3786 " --> pdb=" O LEU A3782 " (cutoff:3.500A) Processing helix chain 'A' and resid 3787 through 3801 removed outlier: 4.770A pdb=" N PHE A3791 " --> pdb=" O ASP A3787 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N SER A3800 " --> pdb=" O GLY A3796 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N CYS A3801 " --> pdb=" O LEU A3797 " (cutoff:3.500A) Processing helix chain 'A' and resid 3805 through 3819 removed outlier: 3.837A pdb=" N PHE A3809 " --> pdb=" O ASP A3805 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N ARG A3811 " --> pdb=" O ASN A3807 " (cutoff:3.500A) removed outlier: 3.533A pdb=" N GLU A3816 " --> pdb=" O GLN A3812 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N GLY A3817 " --> pdb=" O ASN A3813 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N LEU A3818 " --> pdb=" O LYS A3814 " (cutoff:3.500A) Processing helix chain 'A' and resid 3829 through 3849 removed outlier: 4.304A pdb=" N ASP A3833 " --> pdb=" O LYS A3829 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N ASP A3834 " --> pdb=" O VAL A3830 " (cutoff:3.500A) removed outlier: 6.992A pdb=" N GLU A3835 " --> pdb=" O LEU A3831 " (cutoff:3.500A) removed outlier: 6.652A pdb=" N PHE A3836 " --> pdb=" O GLN A3832 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N THR A3837 " --> pdb=" O ASP A3833 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N ASP A3839 " --> pdb=" O GLU A3835 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N PHE A3841 " --> pdb=" O THR A3837 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N LEU A3847 " --> pdb=" O PHE A3843 " (cutoff:3.500A) removed outlier: 4.191A pdb=" N CYS A3848 " --> pdb=" O LEU A3844 " (cutoff:3.500A) Processing helix chain 'A' and resid 3852 through 3861 removed outlier: 4.171A pdb=" N ASN A3857 " --> pdb=" O SER A3853 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N LEU A3859 " --> pdb=" O PHE A3855 " (cutoff:3.500A) removed outlier: 4.738A pdb=" N ARG A3860 " --> pdb=" O GLN A3856 " (cutoff:3.500A) Processing helix chain 'A' and resid 3870 through 3894 removed outlier: 3.806A pdb=" N LEU A3879 " --> pdb=" O THR A3875 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ARG A3881 " --> pdb=" O ASP A3877 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N SER A3885 " --> pdb=" O ARG A3881 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N TYR A3890 " --> pdb=" O ILE A3886 " (cutoff:3.500A) Processing helix chain 'A' and resid 3900 through 3926 removed outlier: 3.928A pdb=" N ASN A3906 " --> pdb=" O GLN A3902 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N PHE A3907 " --> pdb=" O GLY A3903 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N LYS A3909 " --> pdb=" O ARG A3905 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N ALA A3910 " --> pdb=" O ASN A3906 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N VAL A3913 " --> pdb=" O LYS A3909 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N ALA A3914 " --> pdb=" O ALA A3910 " (cutoff:3.500A) removed outlier: 4.207A pdb=" N TYR A3924 " --> pdb=" O THR A3920 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N ILE A3925 " --> pdb=" O LEU A3921 " (cutoff:3.500A) Processing helix chain 'A' and resid 3929 through 3940 removed outlier: 3.587A pdb=" N GLN A3933 " --> pdb=" O CYS A3929 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N LEU A3936 " --> pdb=" O ASN A3932 " (cutoff:3.500A) removed outlier: 4.323A pdb=" N SER A3939 " --> pdb=" O SER A3935 " (cutoff:3.500A) removed outlier: 5.252A pdb=" N ARG A3940 " --> pdb=" O LEU A3936 " (cutoff:3.500A) Processing helix chain 'A' and resid 3941 through 3959 removed outlier: 3.562A pdb=" N HIS A3950 " --> pdb=" O VAL A3946 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N HIS A3954 " --> pdb=" O HIS A3950 " (cutoff:3.500A) removed outlier: 4.407A pdb=" N MET A3957 " --> pdb=" O ALA A3953 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N LYS A3958 " --> pdb=" O HIS A3954 " (cutoff:3.500A) Processing helix chain 'A' and resid 3964 through 3989 removed outlier: 4.602A pdb=" N LEU A3968 " --> pdb=" O SER A3964 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N LYS A3970 " --> pdb=" O ILE A3966 " (cutoff:3.500A) removed outlier: 4.254A pdb=" N GLU A3971 " --> pdb=" O GLU A3967 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N VAL A3980 " --> pdb=" O GLN A3976 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N MET A3982 " --> pdb=" O ASP A3978 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N LEU A3983 " --> pdb=" O MET A3979 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N LEU A3987 " --> pdb=" O LEU A3983 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N GLU A3988 " --> pdb=" O LEU A3984 " (cutoff:3.500A) removed outlier: 5.908A pdb=" N GLY A3989 " --> pdb=" O SER A3985 " (cutoff:3.500A) Processing helix chain 'A' and resid 3994 through 4008 removed outlier: 3.565A pdb=" N VAL A4001 " --> pdb=" O GLY A3997 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N SER A4007 " --> pdb=" O MET A4003 " (cutoff:3.500A) Processing helix chain 'A' and resid 4009 through 4030 removed outlier: 4.562A pdb=" N MET A4013 " --> pdb=" O ASN A4009 " (cutoff:3.500A) removed outlier: 4.315A pdb=" N ILE A4014 " --> pdb=" O ASN A4010 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N LEU A4015 " --> pdb=" O VAL A4011 " (cutoff:3.500A) removed outlier: 4.124A pdb=" N MET A4020 " --> pdb=" O LYS A4016 " (cutoff:3.500A) removed outlier: 4.090A pdb=" N PHE A4021 " --> pdb=" O PHE A4017 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N LYS A4023 " --> pdb=" O ASP A4019 " (cutoff:3.500A) removed outlier: 3.987A pdb=" N LEU A4024 " --> pdb=" O MET A4020 " (cutoff:3.500A) removed outlier: 4.560A pdb=" N LYS A4025 " --> pdb=" O PHE A4021 " (cutoff:3.500A) removed outlier: 5.001A pdb=" N ASP A4026 " --> pdb=" O LEU A4022 " (cutoff:3.500A) Processing helix chain 'A' and resid 4031 through 4036 removed outlier: 4.262A pdb=" N TYR A4036 " --> pdb=" O THR A4032 " (cutoff:3.500A) Processing helix chain 'A' and resid 4045 through 4057 removed outlier: 4.418A pdb=" N PHE A4049 " --> pdb=" O SER A4045 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N HIS A4056 " --> pdb=" O ALA A4052 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N LYS A4057 " --> pdb=" O MET A4053 " (cutoff:3.500A) Processing helix chain 'A' and resid 4060 through 4069 removed outlier: 4.065A pdb=" N GLU A4065 " --> pdb=" O GLN A4061 " (cutoff:3.500A) removed outlier: 4.597A pdb=" N PHE A4066 " --> pdb=" O SER A4062 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N LEU A4068 " --> pdb=" O THR A4064 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N SER A4069 " --> pdb=" O GLU A4065 " (cutoff:3.500A) Processing helix chain 'A' and resid 4081 through 4110 removed outlier: 4.025A pdb=" N VAL A4085 " --> pdb=" O TYR A4081 " (cutoff:3.500A) removed outlier: 5.018A pdb=" N GLU A4090 " --> pdb=" O LYS A4086 " (cutoff:3.500A) Proline residue: A4091 - end of helix removed outlier: 4.316A pdb=" N ASP A4094 " --> pdb=" O GLU A4090 " (cutoff:3.500A) removed outlier: 5.664A pdb=" N ILE A4095 " --> pdb=" O PRO A4091 " (cutoff:3.500A) removed outlier: 5.251A pdb=" N GLY A4096 " --> pdb=" O ALA A4092 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N PHE A4097 " --> pdb=" O LYS A4093 " (cutoff:3.500A) removed outlier: 4.229A pdb=" N ASN A4098 " --> pdb=" O ASP A4094 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N VAL A4099 " --> pdb=" O ILE A4095 " (cutoff:3.500A) Processing helix chain 'A' and resid 4113 through 4124 removed outlier: 3.840A pdb=" N GLN A4117 " --> pdb=" O ASP A4113 " (cutoff:3.500A) removed outlier: 4.203A pdb=" N THR A4118 " --> pdb=" O THR A4114 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N PHE A4119 " --> pdb=" O ARG A4115 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N LEU A4122 " --> pdb=" O THR A4118 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLU A4124 " --> pdb=" O LEU A4120 " (cutoff:3.500A) Processing helix chain 'A' and resid 4125 through 4132 removed outlier: 4.389A pdb=" N TYR A4129 " --> pdb=" O SER A4125 " (cutoff:3.500A) removed outlier: 4.076A pdb=" N GLN A4131 " --> pdb=" O LEU A4127 " (cutoff:3.500A) Proline residue: A4132 - end of helix Processing helix chain 'A' and resid 4154 through 4163 removed outlier: 3.770A pdb=" N ARG A4158 " --> pdb=" O SER A4154 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N THR A4159 " --> pdb=" O GLU A4155 " (cutoff:3.500A) removed outlier: 4.978A pdb=" N GLN A4160 " --> pdb=" O SER A4156 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N TRP A4161 " --> pdb=" O SER A4157 " (cutoff:3.500A) removed outlier: 4.686A pdb=" N GLU A4162 " --> pdb=" O ARG A4158 " (cutoff:3.500A) removed outlier: 5.062A pdb=" N LYS A4163 " --> pdb=" O THR A4159 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4154 through 4163' Processing helix chain 'A' and resid 4164 through 4180 removed outlier: 3.989A pdb=" N SER A4169 " --> pdb=" O GLN A4165 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N PHE A4173 " --> pdb=" O SER A4169 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N PHE A4175 " --> pdb=" O ARG A4171 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N ASP A4176 " --> pdb=" O GLN A4172 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ASN A4179 " --> pdb=" O PHE A4175 " (cutoff:3.500A) Processing helix chain 'A' and resid 4185 through 4207 removed outlier: 3.958A pdb=" N ASP A4196 " --> pdb=" O ASN A4192 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N PHE A4199 " --> pdb=" O GLU A4195 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N ALA A4205 " --> pdb=" O MET A4201 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N GLN A4206 " --> pdb=" O GLN A4202 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N ILE A4207 " --> pdb=" O LEU A4203 " (cutoff:3.500A) Processing helix chain 'A' and resid 4486 through 4500 removed outlier: 4.009A pdb=" N LYS A4491 " --> pdb=" O ALA A4487 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N ALA A4497 " --> pdb=" O LEU A4493 " (cutoff:3.500A) removed outlier: 4.149A pdb=" N ARG A4498 " --> pdb=" O ASN A4494 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N PHE A4500 " --> pdb=" O PHE A4496 " (cutoff:3.500A) Processing helix chain 'A' and resid 4501 through 4521 removed outlier: 4.131A pdb=" N MET A4505 " --> pdb=" O TYR A4501 " (cutoff:3.500A) removed outlier: 4.910A pdb=" N LEU A4506 " --> pdb=" O ASN A4502 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N LEU A4508 " --> pdb=" O ARG A4504 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N PHE A4509 " --> pdb=" O MET A4505 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N ALA A4511 " --> pdb=" O ALA A4507 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N ALA A4513 " --> pdb=" O PHE A4509 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N ASN A4515 " --> pdb=" O ALA A4511 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N ILE A4517 " --> pdb=" O ALA A4513 " (cutoff:3.500A) removed outlier: 4.495A pdb=" N LEU A4519 " --> pdb=" O ASN A4515 " (cutoff:3.500A) removed outlier: 4.399A pdb=" N PHE A4520 " --> pdb=" O PHE A4516 " (cutoff:3.500A) removed outlier: 4.598A pdb=" N TYR A4521 " --> pdb=" O ILE A4517 " (cutoff:3.500A) Processing helix chain 'A' and resid 4568 through 4613 removed outlier: 4.980A pdb=" N THR A4572 " --> pdb=" O TYR A4568 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N LEU A4573 " --> pdb=" O MET A4569 " (cutoff:3.500A) removed outlier: 3.966A pdb=" N LEU A4576 " --> pdb=" O THR A4572 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N ILE A4578 " --> pdb=" O ARG A4574 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N THR A4581 " --> pdb=" O ALA A4577 " (cutoff:3.500A) removed outlier: 4.415A pdb=" N ILE A4588 " --> pdb=" O SER A4584 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N TYR A4591 " --> pdb=" O CYS A4587 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU A4594 " --> pdb=" O GLY A4590 " (cutoff:3.500A) removed outlier: 5.209A pdb=" N VAL A4596 " --> pdb=" O TYR A4592 " (cutoff:3.500A) Proline residue: A4597 - end of helix removed outlier: 3.535A pdb=" N ARG A4603 " --> pdb=" O VAL A4599 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N GLU A4606 " --> pdb=" O LYS A4602 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N GLU A4612 " --> pdb=" O ALA A4608 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N PHE A4613 " --> pdb=" O ARG A4609 " (cutoff:3.500A) Processing helix chain 'A' and resid 4626 through 4638 removed outlier: 3.758A pdb=" N ARG A4633 " --> pdb=" O GLY A4629 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N LEU A4634 " --> pdb=" O GLN A4630 " (cutoff:3.500A) removed outlier: 4.666A pdb=" N VAL A4635 " --> pdb=" O TRP A4631 " (cutoff:3.500A) removed outlier: 4.217A pdb=" N ILE A4636 " --> pdb=" O ASP A4632 " (cutoff:3.500A) removed outlier: 4.672A pdb=" N ASN A4637 " --> pdb=" O ARG A4633 " (cutoff:3.500A) removed outlier: 5.070A pdb=" N THR A4638 " --> pdb=" O LEU A4634 " (cutoff:3.500A) Processing helix chain 'A' and resid 4649 through 4658 removed outlier: 3.692A pdb=" N LYS A4653 " --> pdb=" O PHE A4649 " (cutoff:3.500A) removed outlier: 4.472A pdb=" N MET A4655 " --> pdb=" O LYS A4651 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N ASP A4656 " --> pdb=" O ARG A4652 " (cutoff:3.500A) Processing helix chain 'A' and resid 4663 through 4672 removed outlier: 3.540A pdb=" N ILE A4667 " --> pdb=" O GLY A4663 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N SER A4668 " --> pdb=" O ARG A4664 " (cutoff:3.500A) Processing helix chain 'A' and resid 4703 through 4717 removed outlier: 3.507A pdb=" N TRP A4709 " --> pdb=" O LYS A4705 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N GLY A4712 " --> pdb=" O MET A4708 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N VAL A4713 " --> pdb=" O TRP A4709 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N THR A4716 " --> pdb=" O GLY A4712 " (cutoff:3.500A) Processing helix chain 'A' and resid 4718 through 4736 removed outlier: 3.783A pdb=" N TYR A4722 " --> pdb=" O ASN A4718 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N MET A4727 " --> pdb=" O LEU A4723 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N MET A4729 " --> pdb=" O TRP A4725 " (cutoff:3.500A) removed outlier: 4.133A pdb=" N SER A4730 " --> pdb=" O TYR A4726 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LEU A4732 " --> pdb=" O THR A4728 " (cutoff:3.500A) removed outlier: 4.351A pdb=" N HIS A4734 " --> pdb=" O SER A4730 " (cutoff:3.500A) removed outlier: 4.139A pdb=" N TYR A4735 " --> pdb=" O VAL A4731 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N ASN A4736 " --> pdb=" O LEU A4732 " (cutoff:3.500A) Processing helix chain 'A' and resid 4738 through 4751 removed outlier: 4.878A pdb=" N ALA A4742 " --> pdb=" O PHE A4738 " (cutoff:3.500A) removed outlier: 4.827A pdb=" N HIS A4743 " --> pdb=" O PHE A4739 " (cutoff:3.500A) removed outlier: 4.676A pdb=" N LEU A4744 " --> pdb=" O PHE A4740 " (cutoff:3.500A) removed outlier: 5.237A pdb=" N LEU A4745 " --> pdb=" O ALA A4741 " (cutoff:3.500A) removed outlier: 5.543A pdb=" N ASP A4746 " --> pdb=" O ALA A4742 " (cutoff:3.500A) removed outlier: 4.952A pdb=" N ILE A4747 " --> pdb=" O HIS A4743 " (cutoff:3.500A) removed outlier: 4.571A pdb=" N ALA A4748 " --> pdb=" O LEU A4744 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N MET A4749 " --> pdb=" O LEU A4745 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N GLY A4750 " --> pdb=" O ASP A4746 " (cutoff:3.500A) Processing helix chain 'A' and resid 4752 through 4763 removed outlier: 4.548A pdb=" N ILE A4757 " --> pdb=" O THR A4753 " (cutoff:3.500A) removed outlier: 4.853A pdb=" N THR A4762 " --> pdb=" O LEU A4758 " (cutoff:3.500A) Processing helix chain 'A' and resid 4764 through 4789 removed outlier: 3.597A pdb=" N LEU A4768 " --> pdb=" O ASN A4764 " (cutoff:3.500A) removed outlier: 4.580A pdb=" N LEU A4770 " --> pdb=" O LYS A4766 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N LEU A4774 " --> pdb=" O LEU A4770 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N VAL A4777 " --> pdb=" O GLY A4773 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N TYR A4780 " --> pdb=" O ALA A4776 " (cutoff:3.500A) removed outlier: 3.830A pdb=" N VAL A4785 " --> pdb=" O LEU A4781 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N ALA A4786 " --> pdb=" O TYR A4782 " (cutoff:3.500A) Processing helix chain 'A' and resid 4809 through 4824 removed outlier: 3.544A pdb=" N MET A4815 " --> pdb=" O LEU A4811 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N PHE A4816 " --> pdb=" O THR A4812 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N VAL A4822 " --> pdb=" O MET A4818 " (cutoff:3.500A) removed outlier: 4.574A pdb=" N ARG A4823 " --> pdb=" O TYR A4819 " (cutoff:3.500A) Processing helix chain 'A' and resid 4828 through 4833 removed outlier: 4.188A pdb=" N ILE A4832 " --> pdb=" O ILE A4828 " (cutoff:3.500A) removed outlier: 6.805A pdb=" N GLU A4833 " --> pdb=" O GLY A4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4828 through 4833' Processing helix chain 'A' and resid 4840 through 4855 removed outlier: 3.934A pdb=" N PHE A4847 " --> pdb=" O TYR A4843 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N THR A4850 " --> pdb=" O ILE A4846 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N PHE A4851 " --> pdb=" O PHE A4847 " (cutoff:3.500A) Processing helix chain 'A' and resid 4859 through 4888 removed outlier: 3.808A pdb=" N ILE A4863 " --> pdb=" O LEU A4859 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N GLN A4864 " --> pdb=" O LEU A4860 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N LEU A4866 " --> pdb=" O ILE A4862 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N ILE A4867 " --> pdb=" O ILE A4863 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N ALA A4870 " --> pdb=" O LEU A4866 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N PHE A4871 " --> pdb=" O ILE A4867 " (cutoff:3.500A) removed outlier: 4.037A pdb=" N GLU A4873 " --> pdb=" O ASP A4869 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N ARG A4875 " --> pdb=" O PHE A4871 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N GLN A4878 " --> pdb=" O LEU A4874 " (cutoff:3.500A) Processing helix chain 'A' and resid 4895 through 4900 removed outlier: 4.096A pdb=" N PHE A4899 " --> pdb=" O GLY A4895 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ASP A4900 " --> pdb=" O ASN A4896 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4895 through 4900' Processing helix chain 'A' and resid 4904 through 4912 removed outlier: 3.520A pdb=" N HIS A4909 " --> pdb=" O GLY A4905 " (cutoff:3.500A) Processing helix chain 'A' and resid 4915 through 4929 removed outlier: 4.000A pdb=" N TYR A4919 " --> pdb=" O ASN A4915 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N LEU A4920 " --> pdb=" O LEU A4916 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N LEU A4923 " --> pdb=" O TYR A4919 " (cutoff:3.500A) removed outlier: 3.967A pdb=" N ILE A4927 " --> pdb=" O LEU A4923 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N ASN A4928 " --> pdb=" O MET A4924 " (cutoff:3.500A) Processing helix chain 'A' and resid 4935 through 4948 removed outlier: 3.706A pdb=" N SER A4939 " --> pdb=" O THR A4935 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N TYR A4940 " --> pdb=" O GLY A4936 " (cutoff:3.500A) removed outlier: 4.227A pdb=" N TRP A4942 " --> pdb=" O GLU A4938 " (cutoff:3.500A) Processing helix chain 'A' and resid 4958 through 4963 removed outlier: 6.019A pdb=" N GLN A4962 " --> pdb=" O CYS A4958 " (cutoff:3.500A) Processing helix chain 'A' and resid 398 through 403 removed outlier: 4.201A pdb=" N ASP A 401 " --> pdb=" O HIS A 398 " (cutoff:3.500A) removed outlier: 4.448A pdb=" N GLY A 402 " --> pdb=" O MET A 399 " (cutoff:3.500A) removed outlier: 4.764A pdb=" N LEU A 403 " --> pdb=" O ASP A 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 398 through 403' Processing helix chain 'A' and resid 2708 through 2713 removed outlier: 4.582A pdb=" N ASN A2711 " --> pdb=" O ASP A2708 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ILE A2712 " --> pdb=" O THR A2709 " (cutoff:3.500A) removed outlier: 5.337A pdb=" N THR A2713 " --> pdb=" O SER A2710 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 2708 through 2713' Processing helix chain 'D' and resid 51 through 56 removed outlier: 5.703A pdb=" N SER D 55 " --> pdb=" O SER D 51 " (cutoff:3.500A) removed outlier: 5.957A pdb=" N LYS D 56 " --> pdb=" O THR D 52 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 51 through 56' Processing helix chain 'D' and resid 61 through 66 removed outlier: 5.302A pdb=" N CYS D 65 " --> pdb=" O ASP D 61 " (cutoff:3.500A) Processing helix chain 'D' and resid 74 through 84 Processing helix chain 'D' and resid 265 through 271 removed outlier: 4.495A pdb=" N VAL D 269 " --> pdb=" O GLY D 265 " (cutoff:3.500A) removed outlier: 4.944A pdb=" N ALA D 271 " --> pdb=" O VAL D 267 " (cutoff:3.500A) Processing helix chain 'D' and resid 409 through 438 removed outlier: 3.804A pdb=" N ARG D 420 " --> pdb=" O ALA D 416 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N THR D 422 " --> pdb=" O VAL D 418 " (cutoff:3.500A) removed outlier: 4.042A pdb=" N LEU D 425 " --> pdb=" O SER D 421 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N ARG D 428 " --> pdb=" O PHE D 424 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N GLY D 432 " --> pdb=" O ARG D 428 " (cutoff:3.500A) removed outlier: 3.613A pdb=" N LEU D 433 " --> pdb=" O PHE D 429 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N LEU D 436 " --> pdb=" O GLY D 432 " (cutoff:3.500A) removed outlier: 4.306A pdb=" N LYS D 438 " --> pdb=" O ASP D 434 " (cutoff:3.500A) Processing helix chain 'D' and resid 448 through 464 removed outlier: 4.190A pdb=" N VAL D 452 " --> pdb=" O PRO D 448 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N LEU D 454 " --> pdb=" O GLU D 450 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N SER D 455 " --> pdb=" O SER D 451 " (cutoff:3.500A) removed outlier: 4.436A pdb=" N GLN D 457 " --> pdb=" O SER D 453 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N ASP D 458 " --> pdb=" O LEU D 454 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N LEU D 459 " --> pdb=" O SER D 455 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N PHE D 463 " --> pdb=" O LEU D 459 " (cutoff:3.500A) Processing helix chain 'D' and resid 471 through 493 removed outlier: 3.859A pdb=" N GLN D 476 " --> pdb=" O HIS D 472 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N ASN D 477 " --> pdb=" O GLU D 473 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE D 489 " --> pdb=" O ARG D 485 " (cutoff:3.500A) removed outlier: 4.577A pdb=" N GLU D 492 " --> pdb=" O LEU D 488 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N GLY D 493 " --> pdb=" O PHE D 489 " (cutoff:3.500A) Processing helix chain 'D' and resid 494 through 507 removed outlier: 3.654A pdb=" N LEU D 499 " --> pdb=" O ILE D 495 " (cutoff:3.500A) removed outlier: 3.889A pdb=" N CYS D 501 " --> pdb=" O LEU D 497 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N VAL D 507 " --> pdb=" O ASP D 503 " (cutoff:3.500A) Processing helix chain 'D' and resid 519 through 542 removed outlier: 3.847A pdb=" N GLY D 523 " --> pdb=" O GLY D 519 " (cutoff:3.500A) removed outlier: 4.470A pdb=" N GLU D 524 " --> pdb=" O ARG D 520 " (cutoff:3.500A) removed outlier: 6.150A pdb=" N SER D 525 " --> pdb=" O GLU D 521 " (cutoff:3.500A) removed outlier: 5.999A pdb=" N TRP D 526 " --> pdb=" O ALA D 522 " (cutoff:3.500A) removed outlier: 5.937A pdb=" N LYS D 527 " --> pdb=" O GLY D 523 " (cutoff:3.500A) removed outlier: 5.838A pdb=" N SER D 528 " --> pdb=" O GLU D 524 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N ILE D 541 " --> pdb=" O LEU D 537 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N ARG D 542 " --> pdb=" O ALA D 538 " (cutoff:3.500A) Processing helix chain 'D' and resid 544 through 552 removed outlier: 4.165A pdb=" N SER D 552 " --> pdb=" O CYS D 548 " (cutoff:3.500A) Processing helix chain 'D' and resid 554 through 563 removed outlier: 3.554A pdb=" N LEU D 558 " --> pdb=" O SER D 554 " (cutoff:3.500A) removed outlier: 4.978A pdb=" N GLU D 563 " --> pdb=" O ILE D 559 " (cutoff:3.500A) Processing helix chain 'D' and resid 564 through 582 removed outlier: 6.129A pdb=" N SER D 568 " --> pdb=" O ARG D 564 " (cutoff:3.500A) removed outlier: 6.872A pdb=" N SER D 569 " --> pdb=" O LEU D 565 " (cutoff:3.500A) removed outlier: 6.061A pdb=" N GLY D 570 " --> pdb=" O GLU D 566 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N ILE D 571 " --> pdb=" O ALA D 567 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N GLU D 573 " --> pdb=" O SER D 569 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N VAL D 580 " --> pdb=" O HIS D 576 " (cutoff:3.500A) removed outlier: 5.590A pdb=" N GLU D 581 " --> pdb=" O CYS D 577 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N SER D 582 " --> pdb=" O VAL D 578 " (cutoff:3.500A) Processing helix chain 'D' and resid 583 through 589 removed outlier: 3.811A pdb=" N ASN D 587 " --> pdb=" O PRO D 583 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N ILE D 588 " --> pdb=" O GLU D 584 " (cutoff:3.500A) removed outlier: 4.306A pdb=" N ILE D 589 " --> pdb=" O ALA D 585 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 583 through 589' Processing helix chain 'D' and resid 590 through 605 removed outlier: 3.503A pdb=" N LYS D 595 " --> pdb=" O GLU D 591 " (cutoff:3.500A) removed outlier: 3.557A pdb=" N SER D 596 " --> pdb=" O GLY D 592 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ILE D 597 " --> pdb=" O HIS D 593 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N LEU D 601 " --> pdb=" O ILE D 597 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N LYS D 603 " --> pdb=" O SER D 599 " (cutoff:3.500A) Processing helix chain 'D' and resid 607 through 620 removed outlier: 4.075A pdb=" N LEU D 611 " --> pdb=" O ASN D 607 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N VAL D 613 " --> pdb=" O LYS D 609 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N CYS D 618 " --> pdb=" O LEU D 614 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N VAL D 619 " --> pdb=" O CYS D 615 " (cutoff:3.500A) removed outlier: 5.310A pdb=" N CYS D 620 " --> pdb=" O SER D 616 " (cutoff:3.500A) Processing helix chain 'D' and resid 625 through 636 removed outlier: 3.507A pdb=" N GLN D 629 " --> pdb=" O VAL D 625 " (cutoff:3.500A) removed outlier: 3.919A pdb=" N HIS D 630 " --> pdb=" O ARG D 626 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N LEU D 631 " --> pdb=" O SER D 627 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N CYS D 633 " --> pdb=" O GLN D 629 " (cutoff:3.500A) Processing helix chain 'D' and resid 821 through 828 removed outlier: 4.599A pdb=" N ALA D 825 " --> pdb=" O PRO D 821 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N VAL D 826 " --> pdb=" O CYS D 822 " (cutoff:3.500A) removed outlier: 4.358A pdb=" N LEU D 827 " --> pdb=" O TYR D 823 " (cutoff:3.500A) Proline residue: D 828 - end of helix No H-bonds generated for 'chain 'D' and resid 821 through 828' Processing helix chain 'D' and resid 875 through 901 removed outlier: 4.112A pdb=" N ARG D 880 " --> pdb=" O PRO D 876 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N ASN D 888 " --> pdb=" O LYS D 884 " (cutoff:3.500A) removed outlier: 4.408A pdb=" N GLU D 891 " --> pdb=" O GLU D 887 " (cutoff:3.500A) removed outlier: 5.116A pdb=" N LEU D 892 " --> pdb=" O ASN D 888 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N TRP D 893 " --> pdb=" O ILE D 889 " (cutoff:3.500A) removed outlier: 4.007A pdb=" N LYS D 897 " --> pdb=" O TRP D 893 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N GLU D 899 " --> pdb=" O MET D 895 " (cutoff:3.500A) removed outlier: 4.717A pdb=" N LEU D 900 " --> pdb=" O ASN D 896 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N GLY D 901 " --> pdb=" O LYS D 897 " (cutoff:3.500A) Processing helix chain 'D' and resid 929 through 946 removed outlier: 4.819A pdb=" N MET D 935 " --> pdb=" O TYR D 931 " (cutoff:3.500A) removed outlier: 5.005A pdb=" N SER D 936 " --> pdb=" O ASN D 932 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU D 937 " --> pdb=" O LEU D 933 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLU D 938 " --> pdb=" O GLN D 934 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N THR D 939 " --> pdb=" O MET D 935 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N LEU D 940 " --> pdb=" O SER D 936 " (cutoff:3.500A) removed outlier: 3.740A pdb=" N THR D 942 " --> pdb=" O GLU D 938 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N LEU D 943 " --> pdb=" O THR D 939 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N LEU D 944 " --> pdb=" O LEU D 940 " (cutoff:3.500A) Processing helix chain 'D' and resid 989 through 1012 removed outlier: 3.623A pdb=" N ALA D 994 " --> pdb=" O PRO D 990 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N MET D 995 " --> pdb=" O SER D 991 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N VAL D 996 " --> pdb=" O GLN D 992 " (cutoff:3.500A) removed outlier: 4.755A pdb=" N ASP D 997 " --> pdb=" O GLU D 993 " (cutoff:3.500A) removed outlier: 4.285A pdb=" N LYS D 998 " --> pdb=" O ALA D 994 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N GLU D1001 " --> pdb=" O ASP D 997 " (cutoff:3.500A) removed outlier: 4.266A pdb=" N HIS D1004 " --> pdb=" O ALA D1000 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N ASP D1010 " --> pdb=" O VAL D1006 " (cutoff:3.500A) Processing helix chain 'D' and resid 1042 through 1061 removed outlier: 4.516A pdb=" N ASN D1046 " --> pdb=" O THR D1042 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N LEU D1050 " --> pdb=" O ASN D1046 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N VAL D1054 " --> pdb=" O LEU D1050 " (cutoff:3.500A) removed outlier: 4.578A pdb=" N ARG D1055 " --> pdb=" O ARG D1051 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N THR D1056 " --> pdb=" O GLU D1052 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N LEU D1057 " --> pdb=" O ALA D1053 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N GLY D1059 " --> pdb=" O ARG D1055 " (cutoff:3.500A) removed outlier: 4.066A pdb=" N TYR D1060 " --> pdb=" O THR D1056 " (cutoff:3.500A) Processing helix chain 'D' and resid 1220 through 1225 removed outlier: 5.699A pdb=" N LYS D1225 " --> pdb=" O VAL D1221 " (cutoff:3.500A) Processing helix chain 'D' and resid 1572 through 1577 removed outlier: 4.630A pdb=" N LYS D1576 " --> pdb=" O LYS D1572 " (cutoff:3.500A) removed outlier: 5.412A pdb=" N ASN D1577 " --> pdb=" O SER D1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1572 through 1577' Processing helix chain 'D' and resid 1640 through 1648 removed outlier: 4.231A pdb=" N LEU D1644 " --> pdb=" O ASP D1640 " (cutoff:3.500A) removed outlier: 4.735A pdb=" N THR D1645 " --> pdb=" O ILE D1641 " (cutoff:3.500A) removed outlier: 5.427A pdb=" N GLU D1646 " --> pdb=" O LEU D1642 " (cutoff:3.500A) removed outlier: 4.529A pdb=" N GLN D1647 " --> pdb=" O GLU D1643 " (cutoff:3.500A) removed outlier: 5.137A pdb=" N GLU D1648 " --> pdb=" O LEU D1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1640 through 1648' Processing helix chain 'D' and resid 1649 through 1666 removed outlier: 3.864A pdb=" N HIS D1654 " --> pdb=" O LEU D1650 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N LEU D1660 " --> pdb=" O HIS D1656 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N SER D1662 " --> pdb=" O LEU D1658 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N CYS D1665 " --> pdb=" O TYR D1661 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N ALA D1666 " --> pdb=" O SER D1662 " (cutoff:3.500A) Processing helix chain 'D' and resid 1669 through 1680 removed outlier: 3.631A pdb=" N HIS D1674 " --> pdb=" O HIS D1670 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N CYS D1677 " --> pdb=" O ALA D1673 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N SER D1678 " --> pdb=" O HIS D1674 " (cutoff:3.500A) removed outlier: 4.113A pdb=" N HIS D1679 " --> pdb=" O ALA D1675 " (cutoff:3.500A) Processing helix chain 'D' and resid 1681 through 1691 removed outlier: 4.276A pdb=" N LEU D1685 " --> pdb=" O ASP D1681 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N TYR D1687 " --> pdb=" O PRO D1683 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N GLU D1690 " --> pdb=" O LEU D1686 " (cutoff:3.500A) Processing helix chain 'D' and resid 1695 through 1710 removed outlier: 3.931A pdb=" N ALA D1700 " --> pdb=" O GLY D1696 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ASP D1708 " --> pdb=" O ASP D1704 " (cutoff:3.500A) Processing helix chain 'D' and resid 1711 through 1723 removed outlier: 4.663A pdb=" N THR D1716 " --> pdb=" O SER D1712 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N ALA D1717 " --> pdb=" O SER D1713 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N LEU D1719 " --> pdb=" O ALA D1715 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N MET D1721 " --> pdb=" O ALA D1717 " (cutoff:3.500A) removed outlier: 4.649A pdb=" N ASN D1722 " --> pdb=" O ARG D1718 " (cutoff:3.500A) removed outlier: 5.815A pdb=" N ASN D1723 " --> pdb=" O LEU D1719 " (cutoff:3.500A) Processing helix chain 'D' and resid 1730 through 1736 removed outlier: 3.943A pdb=" N LYS D1734 " --> pdb=" O THR D1730 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N SER D1735 " --> pdb=" O GLU D1731 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N ILE D1736 " --> pdb=" O GLU D1732 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1730 through 1736' Processing helix chain 'D' and resid 1771 through 1777 removed outlier: 4.807A pdb=" N GLN D1777 " --> pdb=" O ASN D1773 " (cutoff:3.500A) Processing helix chain 'D' and resid 1783 through 1804 removed outlier: 3.502A pdb=" N LEU D1787 " --> pdb=" O PRO D1783 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ALA D1789 " --> pdb=" O ASP D1785 " (cutoff:3.500A) removed outlier: 4.518A pdb=" N ILE D1792 " --> pdb=" O LYS D1788 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLN D1793 " --> pdb=" O ALA D1789 " (cutoff:3.500A) removed outlier: 4.055A pdb=" N GLU D1801 " --> pdb=" O GLU D1797 " (cutoff:3.500A) removed outlier: 5.911A pdb=" N LEU D1804 " --> pdb=" O GLN D1800 " (cutoff:3.500A) Processing helix chain 'D' and resid 1813 through 1832 removed outlier: 4.190A pdb=" N LEU D1817 " --> pdb=" O THR D1813 " (cutoff:3.500A) Proline residue: D1820 - end of helix removed outlier: 4.037A pdb=" N LEU D1824 " --> pdb=" O PRO D1820 " (cutoff:3.500A) removed outlier: 4.629A pdb=" N MET D1831 " --> pdb=" O THR D1827 " (cutoff:3.500A) removed outlier: 4.845A pdb=" N GLY D1832 " --> pdb=" O LEU D1828 " (cutoff:3.500A) Processing helix chain 'D' and resid 1835 through 1847 removed outlier: 3.863A pdb=" N HIS D1841 " --> pdb=" O GLU D1837 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N GLN D1844 " --> pdb=" O LYS D1840 " (cutoff:3.500A) removed outlier: 4.930A pdb=" N LEU D1845 " --> pdb=" O HIS D1841 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N ILE D1846 " --> pdb=" O ILE D1842 " (cutoff:3.500A) Processing helix chain 'D' and resid 1901 through 1952 removed outlier: 4.453A pdb=" N GLN D1906 " --> pdb=" O PRO D1902 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N LEU D1909 " --> pdb=" O LEU D1905 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N TYR D1913 " --> pdb=" O LEU D1909 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ASP D1916 " --> pdb=" O GLN D1912 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N GLN D1918 " --> pdb=" O LEU D1914 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N ARG D1920 " --> pdb=" O ASP D1916 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N ALA D1928 " --> pdb=" O GLU D1924 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N ASP D1931 " --> pdb=" O VAL D1927 " (cutoff:3.500A) removed outlier: 5.150A pdb=" N ASP D1932 " --> pdb=" O ALA D1928 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N PHE D1933 " --> pdb=" O PHE D1929 " (cutoff:3.500A) removed outlier: 4.388A pdb=" N VAL D1934 " --> pdb=" O SER D1930 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N LEU D1937 " --> pdb=" O PHE D1933 " (cutoff:3.500A) removed outlier: 4.089A pdb=" N ASP D1939 " --> pdb=" O ALA D1935 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N ASN D1940 " --> pdb=" O LYS D1936 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N GLN D1941 " --> pdb=" O LEU D1937 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ARG D1942 " --> pdb=" O GLN D1938 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N ARG D1944 " --> pdb=" O ASN D1940 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N VAL D1948 " --> pdb=" O ARG D1944 " (cutoff:3.500A) removed outlier: 4.022A pdb=" N MET D1949 " --> pdb=" O TYR D1945 " (cutoff:3.500A) Processing helix chain 'D' and resid 1990 through 1997 removed outlier: 5.326A pdb=" N ARG D1994 " --> pdb=" O PRO D1990 " (cutoff:3.500A) removed outlier: 5.585A pdb=" N GLN D1996 " --> pdb=" O GLU D1992 " (cutoff:3.500A) Processing helix chain 'D' and resid 1999 through 2011 removed outlier: 4.081A pdb=" N ILE D2010 " --> pdb=" O THR D2006 " (cutoff:3.500A) removed outlier: 5.094A pdb=" N GLU D2011 " --> pdb=" O HIS D2007 " (cutoff:3.500A) Processing helix chain 'D' and resid 2024 through 2038 removed outlier: 4.692A pdb=" N GLY D2028 " --> pdb=" O LEU D2024 " (cutoff:3.500A) removed outlier: 4.641A pdb=" N ARG D2029 " --> pdb=" O THR D2025 " (cutoff:3.500A) removed outlier: 4.186A pdb=" N LEU D2030 " --> pdb=" O ILE D2026 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N LEU D2031 " --> pdb=" O ARG D2027 " (cutoff:3.500A) removed outlier: 5.181A pdb=" N SER D2032 " --> pdb=" O GLY D2028 " (cutoff:3.500A) removed outlier: 4.105A pdb=" N THR D2038 " --> pdb=" O VAL D2034 " (cutoff:3.500A) Processing helix chain 'D' and resid 2058 through 2074 removed outlier: 3.971A pdb=" N LEU D2062 " --> pdb=" O THR D2058 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N SER D2064 " --> pdb=" O GLN D2060 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N VAL D2068 " --> pdb=" O SER D2064 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N ALA D2071 " --> pdb=" O MET D2067 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N SER D2074 " --> pdb=" O TRP D2070 " (cutoff:3.500A) Processing helix chain 'D' and resid 2078 through 2095 removed outlier: 3.790A pdb=" N VAL D2082 " --> pdb=" O ASP D2078 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N ARG D2083 " --> pdb=" O PRO D2079 " (cutoff:3.500A) removed outlier: 4.051A pdb=" N LEU D2088 " --> pdb=" O ALA D2084 " (cutoff:3.500A) removed outlier: 3.967A pdb=" N GLN D2092 " --> pdb=" O LEU D2088 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N TYR D2093 " --> pdb=" O LEU D2089 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N GLY D2095 " --> pdb=" O ARG D2091 " (cutoff:3.500A) Processing helix chain 'D' and resid 2096 through 2106 removed outlier: 3.537A pdb=" N ALA D2102 " --> pdb=" O GLY D2098 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N LEU D2103 " --> pdb=" O LEU D2099 " (cutoff:3.500A) Proline residue: D2104 - end of helix Processing helix chain 'D' and resid 2110 through 2132 removed outlier: 3.655A pdb=" N VAL D2114 " --> pdb=" O ASN D2110 " (cutoff:3.500A) removed outlier: 4.752A pdb=" N GLU D2115 " --> pdb=" O GLY D2111 " (cutoff:3.500A) removed outlier: 5.186A pdb=" N ASP D2116 " --> pdb=" O VAL D2112 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N ILE D2118 " --> pdb=" O VAL D2114 " (cutoff:3.500A) removed outlier: 4.856A pdb=" N ASN D2119 " --> pdb=" O GLU D2115 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N GLN D2126 " --> pdb=" O ALA D2122 " (cutoff:3.500A) removed outlier: 3.900A pdb=" N ILE D2127 " --> pdb=" O SER D2123 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N LEU D2131 " --> pdb=" O ILE D2127 " (cutoff:3.500A) removed outlier: 5.004A pdb=" N SER D2132 " --> pdb=" O ARG D2128 " (cutoff:3.500A) Processing helix chain 'D' and resid 2140 through 2153 removed outlier: 3.857A pdb=" N ARG D2145 " --> pdb=" O LYS D2141 " (cutoff:3.500A) Processing helix chain 'D' and resid 2159 through 2167 removed outlier: 3.621A pdb=" N ARG D2164 " --> pdb=" O PRO D2160 " (cutoff:3.500A) removed outlier: 4.242A pdb=" N GLY D2167 " --> pdb=" O MET D2163 " (cutoff:3.500A) Processing helix chain 'D' and resid 2168 through 2181 removed outlier: 3.967A pdb=" N VAL D2172 " --> pdb=" O MET D2168 " (cutoff:3.500A) removed outlier: 3.888A pdb=" N MET D2173 " --> pdb=" O HIS D2169 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N ASN D2178 " --> pdb=" O GLU D2174 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N VAL D2179 " --> pdb=" O VAL D2175 " (cutoff:3.500A) removed outlier: 4.055A pdb=" N GLY D2181 " --> pdb=" O VAL D2177 " (cutoff:3.500A) Processing helix chain 'D' and resid 2191 through 2209 removed outlier: 4.225A pdb=" N ALA D2195 " --> pdb=" O PRO D2191 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N ASN D2196 " --> pdb=" O LYS D2192 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N ARG D2199 " --> pdb=" O ALA D2195 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N PHE D2200 " --> pdb=" O ASN D2196 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N LEU D2201 " --> pdb=" O CYS D2197 " (cutoff:3.500A) removed outlier: 4.121A pdb=" N ARG D2206 " --> pdb=" O CYS D2202 " (cutoff:3.500A) removed outlier: 4.274A pdb=" N ILE D2207 " --> pdb=" O TYR D2203 " (cutoff:3.500A) removed outlier: 4.684A pdb=" N SER D2208 " --> pdb=" O PHE D2204 " (cutoff:3.500A) removed outlier: 5.283A pdb=" N ARG D2209 " --> pdb=" O CYS D2205 " (cutoff:3.500A) Processing helix chain 'D' and resid 2210 through 2220 removed outlier: 4.339A pdb=" N ASP D2217 " --> pdb=" O LYS D2213 " (cutoff:3.500A) removed outlier: 5.022A pdb=" N HIS D2218 " --> pdb=" O ALA D2214 " (cutoff:3.500A) removed outlier: 4.521A pdb=" N LEU D2219 " --> pdb=" O MET D2215 " (cutoff:3.500A) removed outlier: 4.967A pdb=" N SER D2220 " --> pdb=" O PHE D2216 " (cutoff:3.500A) Processing helix chain 'D' and resid 2221 through 2226 removed outlier: 4.250A pdb=" N ASN D2225 " --> pdb=" O TYR D2221 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N SER D2226 " --> pdb=" O LEU D2222 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 2221 through 2226' Processing helix chain 'D' and resid 2239 through 2249 removed outlier: 4.476A pdb=" N VAL D2243 " --> pdb=" O THR D2239 " (cutoff:3.500A) removed outlier: 4.998A pdb=" N ALA D2244 " --> pdb=" O PRO D2240 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N VAL D2248 " --> pdb=" O ALA D2244 " (cutoff:3.500A) Processing helix chain 'D' and resid 2251 through 2258 removed outlier: 4.060A pdb=" N ALA D2255 " --> pdb=" O ASN D2251 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N LEU D2258 " --> pdb=" O LEU D2254 " (cutoff:3.500A) Processing helix chain 'D' and resid 2259 through 2275 removed outlier: 3.864A pdb=" N LEU D2263 " --> pdb=" O ARG D2259 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N LYS D2265 " --> pdb=" O PRO D2261 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N VAL D2266 " --> pdb=" O ASP D2262 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N VAL D2267 " --> pdb=" O LEU D2263 " (cutoff:3.500A) removed outlier: 3.648A pdb=" N ALA D2271 " --> pdb=" O VAL D2267 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N GLY D2274 " --> pdb=" O LEU D2270 " (cutoff:3.500A) removed outlier: 5.819A pdb=" N LEU D2275 " --> pdb=" O ALA D2271 " (cutoff:3.500A) Processing helix chain 'D' and resid 2293 through 2308 removed outlier: 5.676A pdb=" N GLU D2297 " --> pdb=" O PRO D2293 " (cutoff:3.500A) removed outlier: 4.484A pdb=" N ARG D2298 " --> pdb=" O VAL D2294 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N TYR D2299 " --> pdb=" O GLU D2295 " (cutoff:3.500A) removed outlier: 3.766A pdb=" N ASP D2301 " --> pdb=" O GLU D2297 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N PHE D2302 " --> pdb=" O ARG D2298 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N LEU D2303 " --> pdb=" O TYR D2299 " (cutoff:3.500A) removed outlier: 4.295A pdb=" N PHE D2305 " --> pdb=" O ASP D2301 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N VAL D2307 " --> pdb=" O LEU D2303 " (cutoff:3.500A) Processing helix chain 'D' and resid 2314 through 2329 removed outlier: 4.517A pdb=" N VAL D2321 " --> pdb=" O ASN D2317 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N VAL D2322 " --> pdb=" O ALA D2318 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N ARG D2323 " --> pdb=" O ASN D2319 " (cutoff:3.500A) removed outlier: 5.479A pdb=" N LEU D2324 " --> pdb=" O VAL D2320 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ILE D2326 " --> pdb=" O VAL D2322 " (cutoff:3.500A) removed outlier: 5.140A pdb=" N ARG D2327 " --> pdb=" O ARG D2323 " (cutoff:3.500A) removed outlier: 3.774A pdb=" N ARG D2328 " --> pdb=" O LEU D2324 " (cutoff:3.500A) Proline residue: D2329 - end of helix Processing helix chain 'D' and resid 2343 through 2354 removed outlier: 3.863A pdb=" N ALA D2347 " --> pdb=" O GLY D2343 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N MET D2348 " --> pdb=" O LEU D2344 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N GLU D2349 " --> pdb=" O LEU D2345 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N GLU D2350 " --> pdb=" O ALA D2346 " (cutoff:3.500A) removed outlier: 4.842A pdb=" N ILE D2352 " --> pdb=" O MET D2348 " (cutoff:3.500A) removed outlier: 4.295A pdb=" N LYS D2353 " --> pdb=" O GLU D2349 " (cutoff:3.500A) Processing helix chain 'D' and resid 2387 through 2404 removed outlier: 4.168A pdb=" N THR D2391 " --> pdb=" O ASN D2387 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N TYR D2393 " --> pdb=" O ILE D2389 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ALA D2394 " --> pdb=" O MET D2390 " (cutoff:3.500A) removed outlier: 4.800A pdb=" N ASP D2398 " --> pdb=" O ALA D2394 " (cutoff:3.500A) removed outlier: 4.233A pdb=" N ALA D2404 " --> pdb=" O LEU D2400 " (cutoff:3.500A) Processing helix chain 'D' and resid 2408 through 2413 removed outlier: 4.022A pdb=" N ALA D2412 " --> pdb=" O HIS D2408 " (cutoff:3.500A) Processing helix chain 'D' and resid 2416 through 2427 removed outlier: 3.884A pdb=" N ILE D2420 " --> pdb=" O GLU D2416 " (cutoff:3.500A) removed outlier: 3.645A pdb=" N ARG D2421 " --> pdb=" O ALA D2417 " (cutoff:3.500A) removed outlier: 4.112A pdb=" N ARG D2425 " --> pdb=" O ARG D2421 " (cutoff:3.500A) Processing helix chain 'D' and resid 2432 through 2437 removed outlier: 4.447A pdb=" N ILE D2437 " --> pdb=" O LEU D2433 " (cutoff:3.500A) Processing helix chain 'D' and resid 2462 through 2476 removed outlier: 4.637A pdb=" N LYS D2466 " --> pdb=" O CYS D2462 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N LEU D2471 " --> pdb=" O ALA D2467 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N PHE D2472 " --> pdb=" O ALA D2468 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N VAL D2476 " --> pdb=" O PHE D2472 " (cutoff:3.500A) Processing helix chain 'D' and resid 2481 through 2489 removed outlier: 5.243A pdb=" N LEU D2485 " --> pdb=" O VAL D2481 " (cutoff:3.500A) removed outlier: 4.089A pdb=" N LEU D2486 " --> pdb=" O GLN D2482 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N LEU D2488 " --> pdb=" O PHE D2484 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N LEU D2489 " --> pdb=" O LEU D2485 " (cutoff:3.500A) Processing helix chain 'D' and resid 2492 through 2499 removed outlier: 3.943A pdb=" N ASP D2496 " --> pdb=" O GLY D2492 " (cutoff:3.500A) removed outlier: 4.539A pdb=" N LEU D2497 " --> pdb=" O PHE D2493 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N ARG D2498 " --> pdb=" O LEU D2494 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA D2499 " --> pdb=" O PRO D2495 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 2492 through 2499' Processing helix chain 'D' and resid 2511 through 2529 removed outlier: 5.137A pdb=" N ALA D2516 " --> pdb=" O ASP D2512 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LEU D2517 " --> pdb=" O MET D2513 " (cutoff:3.500A) removed outlier: 4.590A pdb=" N ASN D2518 " --> pdb=" O ALA D2514 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N ARG D2519 " --> pdb=" O LEU D2515 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N LEU D2521 " --> pdb=" O LEU D2517 " (cutoff:3.500A) removed outlier: 5.253A pdb=" N CYS D2522 " --> pdb=" O ASN D2518 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N THR D2523 " --> pdb=" O ARG D2519 " (cutoff:3.500A) removed outlier: 5.292A pdb=" N VAL D2525 " --> pdb=" O LEU D2521 " (cutoff:3.500A) Proline residue: D2527 - end of helix Processing helix chain 'D' and resid 2538 through 2552 removed outlier: 4.070A pdb=" N HIS D2542 " --> pdb=" O GLY D2538 " (cutoff:3.500A) removed outlier: 4.693A pdb=" N ILE D2546 " --> pdb=" O HIS D2542 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N ASP D2547 " --> pdb=" O ALA D2543 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N LEU D2549 " --> pdb=" O LEU D2545 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N LEU D2550 " --> pdb=" O ILE D2546 " (cutoff:3.500A) removed outlier: 4.090A pdb=" N THR D2552 " --> pdb=" O SER D2548 " (cutoff:3.500A) Processing helix chain 'D' and resid 2561 through 2576 removed outlier: 4.238A pdb=" N ALA D2565 " --> pdb=" O SER D2561 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N GLN D2566 " --> pdb=" O LEU D2562 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ARG D2567 " --> pdb=" O THR D2563 " (cutoff:3.500A) removed outlier: 4.006A pdb=" N GLU D2571 " --> pdb=" O ARG D2567 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N VAL D2572 " --> pdb=" O ASP D2568 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N LEU D2574 " --> pdb=" O ILE D2570 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N LEU D2575 " --> pdb=" O GLU D2571 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N SER D2576 " --> pdb=" O VAL D2572 " (cutoff:3.500A) Processing helix chain 'D' and resid 2584 through 2601 removed outlier: 3.950A pdb=" N HIS D2588 " --> pdb=" O SER D2584 " (cutoff:3.500A) removed outlier: 4.973A pdb=" N ARG D2591 " --> pdb=" O GLN D2587 " (cutoff:3.500A) removed outlier: 4.733A pdb=" N ARG D2592 " --> pdb=" O HIS D2588 " (cutoff:3.500A) removed outlier: 5.299A pdb=" N LEU D2593 " --> pdb=" O LEU D2589 " (cutoff:3.500A) removed outlier: 6.366A pdb=" N VAL D2594 " --> pdb=" O LEU D2590 " (cutoff:3.500A) removed outlier: 4.635A pdb=" N PHE D2595 " --> pdb=" O ARG D2591 " (cutoff:3.500A) removed outlier: 5.154A pdb=" N ASP D2596 " --> pdb=" O ARG D2592 " (cutoff:3.500A) Proline residue: D2598 - end of helix removed outlier: 5.244A pdb=" N ASN D2601 " --> pdb=" O VAL D2597 " (cutoff:3.500A) Processing helix chain 'D' and resid 2605 through 2627 removed outlier: 4.663A pdb=" N THR D2612 " --> pdb=" O LEU D2608 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N HIS D2614 " --> pdb=" O LEU D2610 " (cutoff:3.500A) removed outlier: 5.009A pdb=" N TYR D2615 " --> pdb=" O LEU D2611 " (cutoff:3.500A) removed outlier: 4.699A pdb=" N ARG D2617 " --> pdb=" O ASN D2613 " (cutoff:3.500A) removed outlier: 4.921A pdb=" N CYS D2618 " --> pdb=" O HIS D2614 " (cutoff:3.500A) removed outlier: 4.155A pdb=" N LYS D2620 " --> pdb=" O GLU D2616 " (cutoff:3.500A) removed outlier: 4.784A pdb=" N TYR D2621 " --> pdb=" O ARG D2617 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N TYR D2622 " --> pdb=" O CYS D2618 " (cutoff:3.500A) removed outlier: 4.522A pdb=" N CYS D2623 " --> pdb=" O TRP D2619 " (cutoff:3.500A) Proline residue: D2625 - end of helix Processing helix chain 'D' and resid 2635 through 2653 removed outlier: 3.606A pdb=" N LEU D2639 " --> pdb=" O SER D2635 " (cutoff:3.500A) removed outlier: 4.582A pdb=" N HIS D2640 " --> pdb=" O GLU D2636 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N LEU D2641 " --> pdb=" O GLU D2637 " (cutoff:3.500A) removed outlier: 4.549A pdb=" N SER D2642 " --> pdb=" O GLU D2638 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ARG D2643 " --> pdb=" O LEU D2639 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N LEU D2645 " --> pdb=" O LEU D2641 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N PHE D2646 " --> pdb=" O SER D2642 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N TRP D2647 " --> pdb=" O ARG D2643 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N GLY D2648 " --> pdb=" O LYS D2644 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N ASP D2651 " --> pdb=" O TRP D2647 " (cutoff:3.500A) removed outlier: 4.243A pdb=" N ALA D2652 " --> pdb=" O GLY D2648 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N LEU D2653 " --> pdb=" O ILE D2649 " (cutoff:3.500A) Processing helix chain 'D' and resid 2660 through 2678 removed outlier: 4.807A pdb=" N LEU D2665 " --> pdb=" O GLU D2661 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N ALA D2666 " --> pdb=" O LEU D2662 " (cutoff:3.500A) Proline residue: D2668 - end of helix removed outlier: 3.595A pdb=" N SER D2671 " --> pdb=" O LEU D2667 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N LEU D2677 " --> pdb=" O VAL D2673 " (cutoff:3.500A) Proline residue: D2678 - end of helix Processing helix chain 'D' and resid 2716 through 2738 removed outlier: 4.232A pdb=" N TYR D2720 " --> pdb=" O GLU D2716 " (cutoff:3.500A) removed outlier: 4.113A pdb=" N PHE D2721 " --> pdb=" O LYS D2717 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N ASN D2723 " --> pdb=" O GLU D2719 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N LYS D2724 " --> pdb=" O TYR D2720 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ALA D2726 " --> pdb=" O ILE D2722 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N HIS D2730 " --> pdb=" O ALA D2726 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ASP D2731 " --> pdb=" O GLU D2727 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N ASP D2736 " --> pdb=" O LYS D2732 " (cutoff:3.500A) removed outlier: 4.585A pdb=" N LYS D2737 " --> pdb=" O TRP D2733 " (cutoff:3.500A) Processing helix chain 'D' and resid 2769 through 2786 Proline residue: D2775 - end of helix removed outlier: 3.589A pdb=" N SER D2779 " --> pdb=" O PRO D2775 " (cutoff:3.500A) removed outlier: 5.015A pdb=" N THR D2782 " --> pdb=" O GLU D2778 " (cutoff:3.500A) removed outlier: 5.180A pdb=" N MET D2783 " --> pdb=" O SER D2779 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N LEU D2784 " --> pdb=" O LEU D2780 " (cutoff:3.500A) removed outlier: 4.223A pdb=" N ALA D2785 " --> pdb=" O LYS D2781 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N TRP D2786 " --> pdb=" O THR D2782 " (cutoff:3.500A) Processing helix chain 'D' and resid 2836 through 2862 removed outlier: 4.735A pdb=" N ALA D2840 " --> pdb=" O ARG D2836 " (cutoff:3.500A) removed outlier: 4.165A pdb=" N MET D2841 " --> pdb=" O ASP D2837 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N MET D2844 " --> pdb=" O ALA D2840 " (cutoff:3.500A) removed outlier: 4.525A pdb=" N ALA D2854 " --> pdb=" O HIS D2850 " (cutoff:3.500A) removed outlier: 4.634A pdb=" N LYS D2855 " --> pdb=" O ASN D2851 " (cutoff:3.500A) removed outlier: 4.856A pdb=" N LYS D2858 " --> pdb=" O ALA D2854 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N LEU D2859 " --> pdb=" O LYS D2855 " (cutoff:3.500A) removed outlier: 4.226A pdb=" N GLU D2860 " --> pdb=" O LYS D2856 " (cutoff:3.500A) removed outlier: 4.756A pdb=" N LEU D2861 " --> pdb=" O LYS D2857 " (cutoff:3.500A) removed outlier: 5.057A pdb=" N GLU D2862 " --> pdb=" O LYS D2858 " (cutoff:3.500A) Processing helix chain 'D' and resid 2881 through 2901 removed outlier: 4.684A pdb=" N LYS D2885 " --> pdb=" O LYS D2881 " (cutoff:3.500A) removed outlier: 4.150A pdb=" N ASP D2886 " --> pdb=" O GLU D2882 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N GLU D2888 " --> pdb=" O ALA D2884 " (cutoff:3.500A) removed outlier: 4.618A pdb=" N LYS D2889 " --> pdb=" O LYS D2885 " (cutoff:3.500A) removed outlier: 3.930A pdb=" N ALA D2890 " --> pdb=" O ASP D2886 " (cutoff:3.500A) removed outlier: 4.385A pdb=" N GLN D2891 " --> pdb=" O ARG D2887 " (cutoff:3.500A) removed outlier: 4.393A pdb=" N ASP D2892 " --> pdb=" O GLU D2888 " (cutoff:3.500A) removed outlier: 4.261A pdb=" N ILE D2893 " --> pdb=" O LYS D2889 " (cutoff:3.500A) removed outlier: 5.102A pdb=" N LEU D2894 " --> pdb=" O ALA D2890 " (cutoff:3.500A) removed outlier: 4.114A pdb=" N LEU D2897 " --> pdb=" O ILE D2893 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N GLN D2898 " --> pdb=" O LEU D2894 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N ILE D2899 " --> pdb=" O LYS D2895 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N ASN D2900 " --> pdb=" O PHE D2896 " (cutoff:3.500A) Processing helix chain 'D' and resid 2982 through 3004 removed outlier: 3.972A pdb=" N ARG D2989 " --> pdb=" O SER D2985 " (cutoff:3.500A) Proline residue: D2990 - end of helix removed outlier: 3.536A pdb=" N SER D2998 " --> pdb=" O GLY D2994 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N GLU D3001 " --> pdb=" O ALA D2997 " (cutoff:3.500A) removed outlier: 4.755A pdb=" N LYS D3002 " --> pdb=" O SER D2998 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N GLU D3003 " --> pdb=" O ASN D2999 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N MET D3004 " --> pdb=" O LYS D3000 " (cutoff:3.500A) Processing helix chain 'D' and resid 3009 through 3028 removed outlier: 3.894A pdb=" N GLY D3013 " --> pdb=" O PHE D3009 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N LEU D3015 " --> pdb=" O LYS D3011 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N HIS D3018 " --> pdb=" O VAL D3014 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ARG D3019 " --> pdb=" O LEU D3015 " (cutoff:3.500A) removed outlier: 4.654A pdb=" N ILE D3020 " --> pdb=" O VAL D3016 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N SER D3021 " --> pdb=" O ARG D3017 " (cutoff:3.500A) removed outlier: 4.444A pdb=" N LEU D3022 " --> pdb=" O HIS D3018 " (cutoff:3.500A) removed outlier: 5.499A pdb=" N PHE D3023 " --> pdb=" O ARG D3019 " (cutoff:3.500A) removed outlier: 4.273A pdb=" N GLY D3024 " --> pdb=" O ILE D3020 " (cutoff:3.500A) Processing helix chain 'D' and resid 3035 through 3052 removed outlier: 4.497A pdb=" N GLN D3039 " --> pdb=" O HIS D3035 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N ASP D3042 " --> pdb=" O GLY D3038 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N ARG D3044 " --> pdb=" O THR D3040 " (cutoff:3.500A) removed outlier: 4.697A pdb=" N THR D3045 " --> pdb=" O LEU D3041 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N VAL D3046 " --> pdb=" O ASP D3042 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N MET D3047 " --> pdb=" O ALA D3043 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N THR D3049 " --> pdb=" O THR D3045 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N GLU D3052 " --> pdb=" O LYS D3048 " (cutoff:3.500A) Processing helix chain 'D' and resid 3062 through 3082 removed outlier: 4.744A pdb=" N ALA D3066 " --> pdb=" O LEU D3062 " (cutoff:3.500A) removed outlier: 5.789A pdb=" N ASP D3068 " --> pdb=" O ASN D3064 " (cutoff:3.500A) removed outlier: 7.554A pdb=" N LEU D3069 " --> pdb=" O ALA D3065 " (cutoff:3.500A) removed outlier: 5.715A pdb=" N GLU D3070 " --> pdb=" O ALA D3066 " (cutoff:3.500A) removed outlier: 3.861A pdb=" N THR D3072 " --> pdb=" O ASP D3068 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N MET D3073 " --> pdb=" O LEU D3069 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N GLU D3074 " --> pdb=" O GLU D3070 " (cutoff:3.500A) removed outlier: 3.681A pdb=" N ASN D3075 " --> pdb=" O LYS D3071 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N LYS D3077 " --> pdb=" O MET D3073 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N PHE D3081 " --> pdb=" O LYS D3077 " (cutoff:3.500A) removed outlier: 4.904A pdb=" N THR D3082 " --> pdb=" O GLN D3078 " (cutoff:3.500A) Processing helix chain 'D' and resid 3102 through 3114 removed outlier: 5.216A pdb=" N LEU D3106 " --> pdb=" O LEU D3102 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N SER D3107 " --> pdb=" O LEU D3103 " (cutoff:3.500A) removed outlier: 4.394A pdb=" N SER D3108 " --> pdb=" O PRO D3104 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N LEU D3109 " --> pdb=" O MET D3105 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N PHE D3110 " --> pdb=" O LEU D3106 " (cutoff:3.500A) Processing helix chain 'D' and resid 3124 through 3142 removed outlier: 3.850A pdb=" N GLN D3128 " --> pdb=" O LEU D3124 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N SER D3130 " --> pdb=" O ASP D3126 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N ARG D3133 " --> pdb=" O VAL D3129 " (cutoff:3.500A) removed outlier: 4.616A pdb=" N LEU D3138 " --> pdb=" O ILE D3134 " (cutoff:3.500A) removed outlier: 4.990A pdb=" N TYR D3139 " --> pdb=" O LEU D3135 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N ALA D3140 " --> pdb=" O THR D3136 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N LEU D3141 " --> pdb=" O SER D3137 " (cutoff:3.500A) Processing helix chain 'D' and resid 3150 through 3166 removed outlier: 4.645A pdb=" N SER D3154 " --> pdb=" O GLU D3150 " (cutoff:3.500A) removed outlier: 4.643A pdb=" N ALA D3155 " --> pdb=" O ARG D3151 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N LEU D3156 " --> pdb=" O GLN D3152 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N GLU D3158 " --> pdb=" O SER D3154 " (cutoff:3.500A) removed outlier: 6.419A pdb=" N GLY D3165 " --> pdb=" O ALA D3161 " (cutoff:3.500A) removed outlier: 4.576A pdb=" N ALA D3166 " --> pdb=" O ALA D3162 " (cutoff:3.500A) Processing helix chain 'D' and resid 3170 through 3182 removed outlier: 3.990A pdb=" N THR D3174 " --> pdb=" O ALA D3170 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N LEU D3176 " --> pdb=" O LEU D3172 " (cutoff:3.500A) removed outlier: 4.681A pdb=" N ASP D3177 " --> pdb=" O GLU D3173 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N LYS D3178 " --> pdb=" O THR D3174 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N ASN D3180 " --> pdb=" O LEU D3176 " (cutoff:3.500A) removed outlier: 5.043A pdb=" N ILE D3181 " --> pdb=" O ASP D3177 " (cutoff:3.500A) removed outlier: 4.663A pdb=" N TYR D3182 " --> pdb=" O LYS D3178 " (cutoff:3.500A) Processing helix chain 'D' and resid 3591 through 3606 removed outlier: 3.802A pdb=" N GLN D3595 " --> pdb=" O LEU D3591 " (cutoff:3.500A) removed outlier: 4.438A pdb=" N ARG D3596 " --> pdb=" O LEU D3592 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N LYS D3597 " --> pdb=" O SER D3593 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N ALA D3599 " --> pdb=" O GLN D3595 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N ALA D3602 " --> pdb=" O ARG D3598 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N ARG D3605 " --> pdb=" O VAL D3601 " (cutoff:3.500A) Processing helix chain 'D' and resid 3613 through 3632 removed outlier: 3.949A pdb=" N ALA D3617 " --> pdb=" O PRO D3613 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N LYS D3627 " --> pdb=" O GLN D3623 " (cutoff:3.500A) removed outlier: 4.947A pdb=" N ILE D3630 " --> pdb=" O GLU D3626 " (cutoff:3.500A) removed outlier: 5.579A pdb=" N GLU D3631 " --> pdb=" O LYS D3627 " (cutoff:3.500A) removed outlier: 5.521A pdb=" N THR D3632 " --> pdb=" O SER D3628 " (cutoff:3.500A) Processing helix chain 'D' and resid 3637 through 3647 removed outlier: 4.188A pdb=" N ILE D3642 " --> pdb=" O GLU D3638 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N ALA D3646 " --> pdb=" O ILE D3642 " (cutoff:3.500A) removed outlier: 4.536A pdb=" N LYS D3647 " --> pdb=" O GLU D3643 " (cutoff:3.500A) Processing helix chain 'D' and resid 3663 through 3678 removed outlier: 3.701A pdb=" N LEU D3668 " --> pdb=" O PRO D3664 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N THR D3678 " --> pdb=" O ARG D3674 " (cutoff:3.500A) Processing helix chain 'D' and resid 3686 through 3700 removed outlier: 3.621A pdb=" N MET D3690 " --> pdb=" O ASP D3686 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N ALA D3691 " --> pdb=" O PHE D3687 " (cutoff:3.500A) removed outlier: 5.277A pdb=" N ASP D3694 " --> pdb=" O MET D3690 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ILE D3695 " --> pdb=" O ALA D3691 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N MET D3696 " --> pdb=" O TYR D3692 " (cutoff:3.500A) removed outlier: 4.941A pdb=" N ALA D3697 " --> pdb=" O ALA D3693 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N SER D3699 " --> pdb=" O ILE D3695 " (cutoff:3.500A) removed outlier: 5.590A pdb=" N CYS D3700 " --> pdb=" O MET D3696 " (cutoff:3.500A) Processing helix chain 'D' and resid 3714 through 3734 removed outlier: 4.858A pdb=" N LYS D3718 " --> pdb=" O SER D3714 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N LYS D3722 " --> pdb=" O LYS D3718 " (cutoff:3.500A) removed outlier: 4.194A pdb=" N LEU D3725 " --> pdb=" O GLU D3721 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N TYR D3727 " --> pdb=" O GLN D3723 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N ALA D3730 " --> pdb=" O LEU D3726 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N LEU D3732 " --> pdb=" O GLN D3728 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N ASP D3734 " --> pdb=" O ALA D3730 " (cutoff:3.500A) Processing helix chain 'D' and resid 3736 through 3749 removed outlier: 3.508A pdb=" N MET D3740 " --> pdb=" O GLY D3736 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N VAL D3741 " --> pdb=" O ALA D3737 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N LEU D3742 " --> pdb=" O ALA D3738 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N THR D3744 " --> pdb=" O MET D3740 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N ILE D3745 " --> pdb=" O VAL D3741 " (cutoff:3.500A) removed outlier: 4.213A pdb=" N SER D3746 " --> pdb=" O LEU D3742 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N SER D3748 " --> pdb=" O THR D3744 " (cutoff:3.500A) removed outlier: 4.842A pdb=" N LYS D3749 " --> pdb=" O ILE D3745 " (cutoff:3.500A) Processing helix chain 'D' and resid 3753 through 3768 removed outlier: 3.686A pdb=" N ALA D3758 " --> pdb=" O PRO D3754 " (cutoff:3.500A) removed outlier: 5.444A pdb=" N LYS D3761 " --> pdb=" O ALA D3757 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N LEU D3762 " --> pdb=" O ALA D3758 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N GLY D3763 " --> pdb=" O THR D3759 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ILE D3766 " --> pdb=" O LEU D3762 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N LEU D3767 " --> pdb=" O GLY D3763 " (cutoff:3.500A) Processing helix chain 'D' and resid 3771 through 3786 removed outlier: 3.755A pdb=" N GLN D3775 " --> pdb=" O ASN D3771 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N GLN D3776 " --> pdb=" O SER D3772 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N LEU D3779 " --> pdb=" O GLN D3775 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU D3782 " --> pdb=" O MET D3778 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N LYS D3785 " --> pdb=" O TYR D3781 " (cutoff:3.500A) removed outlier: 5.011A pdb=" N LYS D3786 " --> pdb=" O LEU D3782 " (cutoff:3.500A) Processing helix chain 'D' and resid 3787 through 3801 removed outlier: 4.770A pdb=" N PHE D3791 " --> pdb=" O ASP D3787 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N SER D3800 " --> pdb=" O GLY D3796 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N CYS D3801 " --> pdb=" O LEU D3797 " (cutoff:3.500A) Processing helix chain 'D' and resid 3805 through 3819 removed outlier: 3.836A pdb=" N PHE D3809 " --> pdb=" O ASP D3805 " (cutoff:3.500A) removed outlier: 3.875A pdb=" N ARG D3811 " --> pdb=" O ASN D3807 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N GLU D3816 " --> pdb=" O GLN D3812 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N GLY D3817 " --> pdb=" O ASN D3813 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N LEU D3818 " --> pdb=" O LYS D3814 " (cutoff:3.500A) Processing helix chain 'D' and resid 3829 through 3849 removed outlier: 4.304A pdb=" N ASP D3833 " --> pdb=" O LYS D3829 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N ASP D3834 " --> pdb=" O VAL D3830 " (cutoff:3.500A) removed outlier: 6.991A pdb=" N GLU D3835 " --> pdb=" O LEU D3831 " (cutoff:3.500A) removed outlier: 6.652A pdb=" N PHE D3836 " --> pdb=" O GLN D3832 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N THR D3837 " --> pdb=" O ASP D3833 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N ASP D3839 " --> pdb=" O GLU D3835 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N PHE D3841 " --> pdb=" O THR D3837 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N LEU D3847 " --> pdb=" O PHE D3843 " (cutoff:3.500A) removed outlier: 4.191A pdb=" N CYS D3848 " --> pdb=" O LEU D3844 " (cutoff:3.500A) Processing helix chain 'D' and resid 3852 through 3861 removed outlier: 4.172A pdb=" N ASN D3857 " --> pdb=" O SER D3853 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N LEU D3859 " --> pdb=" O PHE D3855 " (cutoff:3.500A) removed outlier: 4.738A pdb=" N ARG D3860 " --> pdb=" O GLN D3856 " (cutoff:3.500A) Processing helix chain 'D' and resid 3870 through 3894 removed outlier: 3.806A pdb=" N LEU D3879 " --> pdb=" O THR D3875 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ARG D3881 " --> pdb=" O ASP D3877 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N SER D3885 " --> pdb=" O ARG D3881 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N TYR D3890 " --> pdb=" O ILE D3886 " (cutoff:3.500A) Processing helix chain 'D' and resid 3900 through 3926 removed outlier: 3.928A pdb=" N ASN D3906 " --> pdb=" O GLN D3902 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N PHE D3907 " --> pdb=" O GLY D3903 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N LYS D3909 " --> pdb=" O ARG D3905 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N ALA D3910 " --> pdb=" O ASN D3906 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N VAL D3913 " --> pdb=" O LYS D3909 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N ALA D3914 " --> pdb=" O ALA D3910 " (cutoff:3.500A) removed outlier: 4.207A pdb=" N TYR D3924 " --> pdb=" O THR D3920 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ILE D3925 " --> pdb=" O LEU D3921 " (cutoff:3.500A) Processing helix chain 'D' and resid 3929 through 3940 removed outlier: 3.588A pdb=" N GLN D3933 " --> pdb=" O CYS D3929 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N LEU D3936 " --> pdb=" O ASN D3932 " (cutoff:3.500A) removed outlier: 4.323A pdb=" N SER D3939 " --> pdb=" O SER D3935 " (cutoff:3.500A) removed outlier: 5.252A pdb=" N ARG D3940 " --> pdb=" O LEU D3936 " (cutoff:3.500A) Processing helix chain 'D' and resid 3941 through 3959 removed outlier: 3.562A pdb=" N HIS D3950 " --> pdb=" O VAL D3946 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N HIS D3954 " --> pdb=" O HIS D3950 " (cutoff:3.500A) removed outlier: 4.407A pdb=" N MET D3957 " --> pdb=" O ALA D3953 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N LYS D3958 " --> pdb=" O HIS D3954 " (cutoff:3.500A) Processing helix chain 'D' and resid 3964 through 3989 removed outlier: 4.602A pdb=" N LEU D3968 " --> pdb=" O SER D3964 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N LYS D3970 " --> pdb=" O ILE D3966 " (cutoff:3.500A) removed outlier: 4.254A pdb=" N GLU D3971 " --> pdb=" O GLU D3967 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N VAL D3980 " --> pdb=" O GLN D3976 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N MET D3982 " --> pdb=" O ASP D3978 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N LEU D3983 " --> pdb=" O MET D3979 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N LEU D3987 " --> pdb=" O LEU D3983 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N GLU D3988 " --> pdb=" O LEU D3984 " (cutoff:3.500A) removed outlier: 5.908A pdb=" N GLY D3989 " --> pdb=" O SER D3985 " (cutoff:3.500A) Processing helix chain 'D' and resid 3994 through 4008 removed outlier: 3.566A pdb=" N VAL D4001 " --> pdb=" O GLY D3997 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N SER D4007 " --> pdb=" O MET D4003 " (cutoff:3.500A) Processing helix chain 'D' and resid 4009 through 4030 removed outlier: 4.562A pdb=" N MET D4013 " --> pdb=" O ASN D4009 " (cutoff:3.500A) removed outlier: 4.315A pdb=" N ILE D4014 " --> pdb=" O ASN D4010 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N LEU D4015 " --> pdb=" O VAL D4011 " (cutoff:3.500A) removed outlier: 4.124A pdb=" N MET D4020 " --> pdb=" O LYS D4016 " (cutoff:3.500A) removed outlier: 4.090A pdb=" N PHE D4021 " --> pdb=" O PHE D4017 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N LYS D4023 " --> pdb=" O ASP D4019 " (cutoff:3.500A) removed outlier: 3.987A pdb=" N LEU D4024 " --> pdb=" O MET D4020 " (cutoff:3.500A) removed outlier: 4.559A pdb=" N LYS D4025 " --> pdb=" O PHE D4021 " (cutoff:3.500A) removed outlier: 5.001A pdb=" N ASP D4026 " --> pdb=" O LEU D4022 " (cutoff:3.500A) Processing helix chain 'D' and resid 4031 through 4036 removed outlier: 4.262A pdb=" N TYR D4036 " --> pdb=" O THR D4032 " (cutoff:3.500A) Processing helix chain 'D' and resid 4045 through 4057 removed outlier: 4.418A pdb=" N PHE D4049 " --> pdb=" O SER D4045 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N HIS D4056 " --> pdb=" O ALA D4052 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N LYS D4057 " --> pdb=" O MET D4053 " (cutoff:3.500A) Processing helix chain 'D' and resid 4060 through 4069 removed outlier: 4.064A pdb=" N GLU D4065 " --> pdb=" O GLN D4061 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N PHE D4066 " --> pdb=" O SER D4062 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N LEU D4068 " --> pdb=" O THR D4064 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N SER D4069 " --> pdb=" O GLU D4065 " (cutoff:3.500A) Processing helix chain 'D' and resid 4081 through 4110 removed outlier: 4.025A pdb=" N VAL D4085 " --> pdb=" O TYR D4081 " (cutoff:3.500A) removed outlier: 5.018A pdb=" N GLU D4090 " --> pdb=" O LYS D4086 " (cutoff:3.500A) Proline residue: D4091 - end of helix removed outlier: 4.315A pdb=" N ASP D4094 " --> pdb=" O GLU D4090 " (cutoff:3.500A) removed outlier: 5.664A pdb=" N ILE D4095 " --> pdb=" O PRO D4091 " (cutoff:3.500A) removed outlier: 5.252A pdb=" N GLY D4096 " --> pdb=" O ALA D4092 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N PHE D4097 " --> pdb=" O LYS D4093 " (cutoff:3.500A) removed outlier: 4.228A pdb=" N ASN D4098 " --> pdb=" O ASP D4094 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N VAL D4099 " --> pdb=" O ILE D4095 " (cutoff:3.500A) Processing helix chain 'D' and resid 4113 through 4124 removed outlier: 3.841A pdb=" N GLN D4117 " --> pdb=" O ASP D4113 " (cutoff:3.500A) removed outlier: 4.203A pdb=" N THR D4118 " --> pdb=" O THR D4114 " (cutoff:3.500A) removed outlier: 4.411A pdb=" N PHE D4119 " --> pdb=" O ARG D4115 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N LEU D4122 " --> pdb=" O THR D4118 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLU D4124 " --> pdb=" O LEU D4120 " (cutoff:3.500A) Processing helix chain 'D' and resid 4125 through 4132 removed outlier: 4.388A pdb=" N TYR D4129 " --> pdb=" O SER D4125 " (cutoff:3.500A) removed outlier: 4.076A pdb=" N GLN D4131 " --> pdb=" O LEU D4127 " (cutoff:3.500A) Proline residue: D4132 - end of helix Processing helix chain 'D' and resid 4154 through 4163 removed outlier: 3.770A pdb=" N ARG D4158 " --> pdb=" O SER D4154 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N THR D4159 " --> pdb=" O GLU D4155 " (cutoff:3.500A) removed outlier: 4.977A pdb=" N GLN D4160 " --> pdb=" O SER D4156 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N TRP D4161 " --> pdb=" O SER D4157 " (cutoff:3.500A) removed outlier: 4.686A pdb=" N GLU D4162 " --> pdb=" O ARG D4158 " (cutoff:3.500A) removed outlier: 5.062A pdb=" N LYS D4163 " --> pdb=" O THR D4159 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4154 through 4163' Processing helix chain 'D' and resid 4164 through 4180 removed outlier: 3.989A pdb=" N SER D4169 " --> pdb=" O GLN D4165 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N PHE D4173 " --> pdb=" O SER D4169 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N PHE D4175 " --> pdb=" O ARG D4171 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N ASP D4176 " --> pdb=" O GLN D4172 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ASN D4179 " --> pdb=" O PHE D4175 " (cutoff:3.500A) Processing helix chain 'D' and resid 4185 through 4207 removed outlier: 3.958A pdb=" N ASP D4196 " --> pdb=" O ASN D4192 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N PHE D4199 " --> pdb=" O GLU D4195 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N ALA D4205 " --> pdb=" O MET D4201 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N GLN D4206 " --> pdb=" O GLN D4202 " (cutoff:3.500A) removed outlier: 3.926A pdb=" N ILE D4207 " --> pdb=" O LEU D4203 " (cutoff:3.500A) Processing helix chain 'D' and resid 4486 through 4500 removed outlier: 4.009A pdb=" N LYS D4491 " --> pdb=" O ALA D4487 " (cutoff:3.500A) removed outlier: 3.836A pdb=" N ALA D4497 " --> pdb=" O LEU D4493 " (cutoff:3.500A) removed outlier: 4.149A pdb=" N ARG D4498 " --> pdb=" O ASN D4494 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N PHE D4500 " --> pdb=" O PHE D4496 " (cutoff:3.500A) Processing helix chain 'D' and resid 4501 through 4521 removed outlier: 4.131A pdb=" N MET D4505 " --> pdb=" O TYR D4501 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N LEU D4506 " --> pdb=" O ASN D4502 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N LEU D4508 " --> pdb=" O ARG D4504 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N PHE D4509 " --> pdb=" O MET D4505 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N ALA D4511 " --> pdb=" O ALA D4507 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N ALA D4513 " --> pdb=" O PHE D4509 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N ASN D4515 " --> pdb=" O ALA D4511 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N ILE D4517 " --> pdb=" O ALA D4513 " (cutoff:3.500A) removed outlier: 4.495A pdb=" N LEU D4519 " --> pdb=" O ASN D4515 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N PHE D4520 " --> pdb=" O PHE D4516 " (cutoff:3.500A) removed outlier: 4.598A pdb=" N TYR D4521 " --> pdb=" O ILE D4517 " (cutoff:3.500A) Processing helix chain 'D' and resid 4568 through 4613 removed outlier: 4.980A pdb=" N THR D4572 " --> pdb=" O TYR D4568 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N LEU D4573 " --> pdb=" O MET D4569 " (cutoff:3.500A) removed outlier: 3.966A pdb=" N LEU D4576 " --> pdb=" O THR D4572 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N ILE D4578 " --> pdb=" O ARG D4574 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N THR D4581 " --> pdb=" O ALA D4577 " (cutoff:3.500A) removed outlier: 4.416A pdb=" N ILE D4588 " --> pdb=" O SER D4584 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N TYR D4591 " --> pdb=" O CYS D4587 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU D4594 " --> pdb=" O GLY D4590 " (cutoff:3.500A) removed outlier: 5.209A pdb=" N VAL D4596 " --> pdb=" O TYR D4592 " (cutoff:3.500A) Proline residue: D4597 - end of helix removed outlier: 3.534A pdb=" N ARG D4603 " --> pdb=" O VAL D4599 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N GLU D4606 " --> pdb=" O LYS D4602 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N GLU D4612 " --> pdb=" O ALA D4608 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N PHE D4613 " --> pdb=" O ARG D4609 " (cutoff:3.500A) Processing helix chain 'D' and resid 4626 through 4638 removed outlier: 3.758A pdb=" N ARG D4633 " --> pdb=" O GLY D4629 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N LEU D4634 " --> pdb=" O GLN D4630 " (cutoff:3.500A) removed outlier: 4.666A pdb=" N VAL D4635 " --> pdb=" O TRP D4631 " (cutoff:3.500A) removed outlier: 4.218A pdb=" N ILE D4636 " --> pdb=" O ASP D4632 " (cutoff:3.500A) removed outlier: 4.672A pdb=" N ASN D4637 " --> pdb=" O ARG D4633 " (cutoff:3.500A) removed outlier: 5.071A pdb=" N THR D4638 " --> pdb=" O LEU D4634 " (cutoff:3.500A) Processing helix chain 'D' and resid 4649 through 4658 removed outlier: 3.692A pdb=" N LYS D4653 " --> pdb=" O PHE D4649 " (cutoff:3.500A) removed outlier: 4.472A pdb=" N MET D4655 " --> pdb=" O LYS D4651 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N ASP D4656 " --> pdb=" O ARG D4652 " (cutoff:3.500A) Processing helix chain 'D' and resid 4663 through 4672 removed outlier: 3.540A pdb=" N ILE D4667 " --> pdb=" O GLY D4663 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N SER D4668 " --> pdb=" O ARG D4664 " (cutoff:3.500A) Processing helix chain 'D' and resid 4703 through 4717 removed outlier: 3.508A pdb=" N TRP D4709 " --> pdb=" O LYS D4705 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N GLY D4712 " --> pdb=" O MET D4708 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N VAL D4713 " --> pdb=" O TRP D4709 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N THR D4716 " --> pdb=" O GLY D4712 " (cutoff:3.500A) Processing helix chain 'D' and resid 4718 through 4736 removed outlier: 3.783A pdb=" N TYR D4722 " --> pdb=" O ASN D4718 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N MET D4727 " --> pdb=" O LEU D4723 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N MET D4729 " --> pdb=" O TRP D4725 " (cutoff:3.500A) removed outlier: 4.133A pdb=" N SER D4730 " --> pdb=" O TYR D4726 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LEU D4732 " --> pdb=" O THR D4728 " (cutoff:3.500A) removed outlier: 4.351A pdb=" N HIS D4734 " --> pdb=" O SER D4730 " (cutoff:3.500A) removed outlier: 4.139A pdb=" N TYR D4735 " --> pdb=" O VAL D4731 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N ASN D4736 " --> pdb=" O LEU D4732 " (cutoff:3.500A) Processing helix chain 'D' and resid 4738 through 4751 removed outlier: 4.880A pdb=" N ALA D4742 " --> pdb=" O PHE D4738 " (cutoff:3.500A) removed outlier: 4.827A pdb=" N HIS D4743 " --> pdb=" O PHE D4739 " (cutoff:3.500A) removed outlier: 4.677A pdb=" N LEU D4744 " --> pdb=" O PHE D4740 " (cutoff:3.500A) removed outlier: 5.237A pdb=" N LEU D4745 " --> pdb=" O ALA D4741 " (cutoff:3.500A) removed outlier: 5.543A pdb=" N ASP D4746 " --> pdb=" O ALA D4742 " (cutoff:3.500A) removed outlier: 4.952A pdb=" N ILE D4747 " --> pdb=" O HIS D4743 " (cutoff:3.500A) removed outlier: 4.572A pdb=" N ALA D4748 " --> pdb=" O LEU D4744 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N MET D4749 " --> pdb=" O LEU D4745 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N GLY D4750 " --> pdb=" O ASP D4746 " (cutoff:3.500A) Processing helix chain 'D' and resid 4752 through 4763 removed outlier: 4.549A pdb=" N ILE D4757 " --> pdb=" O THR D4753 " (cutoff:3.500A) removed outlier: 4.853A pdb=" N THR D4762 " --> pdb=" O LEU D4758 " (cutoff:3.500A) Processing helix chain 'D' and resid 4764 through 4789 removed outlier: 3.597A pdb=" N LEU D4768 " --> pdb=" O ASN D4764 " (cutoff:3.500A) removed outlier: 4.580A pdb=" N LEU D4770 " --> pdb=" O LYS D4766 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N LEU D4774 " --> pdb=" O LEU D4770 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N VAL D4777 " --> pdb=" O GLY D4773 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N TYR D4780 " --> pdb=" O ALA D4776 " (cutoff:3.500A) removed outlier: 3.830A pdb=" N VAL D4785 " --> pdb=" O LEU D4781 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N ALA D4786 " --> pdb=" O TYR D4782 " (cutoff:3.500A) Processing helix chain 'D' and resid 4809 through 4824 removed outlier: 3.545A pdb=" N MET D4815 " --> pdb=" O LEU D4811 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N PHE D4816 " --> pdb=" O THR D4812 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N VAL D4822 " --> pdb=" O MET D4818 " (cutoff:3.500A) removed outlier: 4.574A pdb=" N ARG D4823 " --> pdb=" O TYR D4819 " (cutoff:3.500A) Processing helix chain 'D' and resid 4828 through 4833 removed outlier: 4.188A pdb=" N ILE D4832 " --> pdb=" O ILE D4828 " (cutoff:3.500A) removed outlier: 6.805A pdb=" N GLU D4833 " --> pdb=" O GLY D4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4828 through 4833' Processing helix chain 'D' and resid 4840 through 4855 removed outlier: 3.934A pdb=" N PHE D4847 " --> pdb=" O TYR D4843 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N THR D4850 " --> pdb=" O ILE D4846 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N PHE D4851 " --> pdb=" O PHE D4847 " (cutoff:3.500A) Processing helix chain 'D' and resid 4859 through 4888 removed outlier: 3.809A pdb=" N ILE D4863 " --> pdb=" O LEU D4859 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N GLN D4864 " --> pdb=" O LEU D4860 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N LEU D4866 " --> pdb=" O ILE D4862 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N ILE D4867 " --> pdb=" O ILE D4863 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N ALA D4870 " --> pdb=" O LEU D4866 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N PHE D4871 " --> pdb=" O ILE D4867 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N GLU D4873 " --> pdb=" O ASP D4869 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ARG D4875 " --> pdb=" O PHE D4871 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N GLN D4878 " --> pdb=" O LEU D4874 " (cutoff:3.500A) Processing helix chain 'D' and resid 4895 through 4900 removed outlier: 4.096A pdb=" N PHE D4899 " --> pdb=" O GLY D4895 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ASP D4900 " --> pdb=" O ASN D4896 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 4895 through 4900' Processing helix chain 'D' and resid 4904 through 4912 removed outlier: 3.520A pdb=" N HIS D4909 " --> pdb=" O GLY D4905 " (cutoff:3.500A) Processing helix chain 'D' and resid 4915 through 4929 removed outlier: 4.000A pdb=" N TYR D4919 " --> pdb=" O ASN D4915 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N LEU D4920 " --> pdb=" O LEU D4916 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N LEU D4923 " --> pdb=" O TYR D4919 " (cutoff:3.500A) removed outlier: 3.967A pdb=" N ILE D4927 " --> pdb=" O LEU D4923 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N ASN D4928 " --> pdb=" O MET D4924 " (cutoff:3.500A) Processing helix chain 'D' and resid 4935 through 4948 removed outlier: 3.706A pdb=" N SER D4939 " --> pdb=" O THR D4935 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N TYR D4940 " --> pdb=" O GLY D4936 " (cutoff:3.500A) removed outlier: 4.226A pdb=" N TRP D4942 " --> pdb=" O GLU D4938 " (cutoff:3.500A) Processing helix chain 'D' and resid 4958 through 4963 removed outlier: 6.019A pdb=" N GLN D4962 " --> pdb=" O CYS D4958 " (cutoff:3.500A) Processing helix chain 'D' and resid 398 through 403 removed outlier: 4.201A pdb=" N ASP D 401 " --> pdb=" O HIS D 398 " (cutoff:3.500A) removed outlier: 4.448A pdb=" N GLY D 402 " --> pdb=" O MET D 399 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N LEU D 403 " --> pdb=" O ASP D 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 398 through 403' Processing helix chain 'D' and resid 2708 through 2713 removed outlier: 4.582A pdb=" N ASN D2711 " --> pdb=" O ASP D2708 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ILE D2712 " --> pdb=" O THR D2709 " (cutoff:3.500A) removed outlier: 5.337A pdb=" N THR D2713 " --> pdb=" O SER D2710 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 2708 through 2713' Processing helix chain 'G' and resid 51 through 56 removed outlier: 5.703A pdb=" N SER G 55 " --> pdb=" O SER G 51 " (cutoff:3.500A) removed outlier: 5.956A pdb=" N LYS G 56 " --> pdb=" O THR G 52 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 51 through 56' Processing helix chain 'G' and resid 61 through 66 removed outlier: 5.303A pdb=" N CYS G 65 " --> pdb=" O ASP G 61 " (cutoff:3.500A) Processing helix chain 'G' and resid 74 through 84 Processing helix chain 'G' and resid 265 through 271 removed outlier: 4.494A pdb=" N VAL G 269 " --> pdb=" O GLY G 265 " (cutoff:3.500A) removed outlier: 4.943A pdb=" N ALA G 271 " --> pdb=" O VAL G 267 " (cutoff:3.500A) Processing helix chain 'G' and resid 409 through 438 removed outlier: 3.804A pdb=" N ARG G 420 " --> pdb=" O ALA G 416 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N THR G 422 " --> pdb=" O VAL G 418 " (cutoff:3.500A) removed outlier: 4.042A pdb=" N LEU G 425 " --> pdb=" O SER G 421 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N ARG G 428 " --> pdb=" O PHE G 424 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N GLY G 432 " --> pdb=" O ARG G 428 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N LEU G 433 " --> pdb=" O PHE G 429 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N LEU G 436 " --> pdb=" O GLY G 432 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N LYS G 438 " --> pdb=" O ASP G 434 " (cutoff:3.500A) Processing helix chain 'G' and resid 448 through 464 removed outlier: 4.190A pdb=" N VAL G 452 " --> pdb=" O PRO G 448 " (cutoff:3.500A) removed outlier: 3.650A pdb=" N LEU G 454 " --> pdb=" O GLU G 450 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N SER G 455 " --> pdb=" O SER G 451 " (cutoff:3.500A) removed outlier: 4.436A pdb=" N GLN G 457 " --> pdb=" O SER G 453 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N ASP G 458 " --> pdb=" O LEU G 454 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N LEU G 459 " --> pdb=" O SER G 455 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N PHE G 463 " --> pdb=" O LEU G 459 " (cutoff:3.500A) Processing helix chain 'G' and resid 471 through 493 removed outlier: 3.859A pdb=" N GLN G 476 " --> pdb=" O HIS G 472 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N ASN G 477 " --> pdb=" O GLU G 473 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE G 489 " --> pdb=" O ARG G 485 " (cutoff:3.500A) removed outlier: 4.577A pdb=" N GLU G 492 " --> pdb=" O LEU G 488 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N GLY G 493 " --> pdb=" O PHE G 489 " (cutoff:3.500A) Processing helix chain 'G' and resid 494 through 507 removed outlier: 3.655A pdb=" N LEU G 499 " --> pdb=" O ILE G 495 " (cutoff:3.500A) removed outlier: 3.888A pdb=" N CYS G 501 " --> pdb=" O LEU G 497 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N VAL G 507 " --> pdb=" O ASP G 503 " (cutoff:3.500A) Processing helix chain 'G' and resid 519 through 542 removed outlier: 3.846A pdb=" N GLY G 523 " --> pdb=" O GLY G 519 " (cutoff:3.500A) removed outlier: 4.470A pdb=" N GLU G 524 " --> pdb=" O ARG G 520 " (cutoff:3.500A) removed outlier: 6.151A pdb=" N SER G 525 " --> pdb=" O GLU G 521 " (cutoff:3.500A) removed outlier: 5.999A pdb=" N TRP G 526 " --> pdb=" O ALA G 522 " (cutoff:3.500A) removed outlier: 5.936A pdb=" N LYS G 527 " --> pdb=" O GLY G 523 " (cutoff:3.500A) removed outlier: 5.837A pdb=" N SER G 528 " --> pdb=" O GLU G 524 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N ILE G 541 " --> pdb=" O LEU G 537 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N ARG G 542 " --> pdb=" O ALA G 538 " (cutoff:3.500A) Processing helix chain 'G' and resid 544 through 552 removed outlier: 4.165A pdb=" N SER G 552 " --> pdb=" O CYS G 548 " (cutoff:3.500A) Processing helix chain 'G' and resid 554 through 563 removed outlier: 3.554A pdb=" N LEU G 558 " --> pdb=" O SER G 554 " (cutoff:3.500A) removed outlier: 4.978A pdb=" N GLU G 563 " --> pdb=" O ILE G 559 " (cutoff:3.500A) Processing helix chain 'G' and resid 564 through 582 removed outlier: 6.129A pdb=" N SER G 568 " --> pdb=" O ARG G 564 " (cutoff:3.500A) removed outlier: 6.872A pdb=" N SER G 569 " --> pdb=" O LEU G 565 " (cutoff:3.500A) removed outlier: 6.062A pdb=" N GLY G 570 " --> pdb=" O GLU G 566 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N ILE G 571 " --> pdb=" O ALA G 567 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N GLU G 573 " --> pdb=" O SER G 569 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N VAL G 580 " --> pdb=" O HIS G 576 " (cutoff:3.500A) removed outlier: 5.591A pdb=" N GLU G 581 " --> pdb=" O CYS G 577 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N SER G 582 " --> pdb=" O VAL G 578 " (cutoff:3.500A) Processing helix chain 'G' and resid 583 through 589 removed outlier: 3.811A pdb=" N ASN G 587 " --> pdb=" O PRO G 583 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N ILE G 588 " --> pdb=" O GLU G 584 " (cutoff:3.500A) removed outlier: 4.307A pdb=" N ILE G 589 " --> pdb=" O ALA G 585 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 583 through 589' Processing helix chain 'G' and resid 590 through 605 removed outlier: 3.503A pdb=" N LYS G 595 " --> pdb=" O GLU G 591 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N SER G 596 " --> pdb=" O GLY G 592 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ILE G 597 " --> pdb=" O HIS G 593 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N LEU G 601 " --> pdb=" O ILE G 597 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N LYS G 603 " --> pdb=" O SER G 599 " (cutoff:3.500A) Processing helix chain 'G' and resid 607 through 620 removed outlier: 4.076A pdb=" N LEU G 611 " --> pdb=" O ASN G 607 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N VAL G 613 " --> pdb=" O LYS G 609 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N CYS G 618 " --> pdb=" O LEU G 614 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N VAL G 619 " --> pdb=" O CYS G 615 " (cutoff:3.500A) removed outlier: 5.308A pdb=" N CYS G 620 " --> pdb=" O SER G 616 " (cutoff:3.500A) Processing helix chain 'G' and resid 625 through 636 removed outlier: 3.507A pdb=" N GLN G 629 " --> pdb=" O VAL G 625 " (cutoff:3.500A) removed outlier: 3.920A pdb=" N HIS G 630 " --> pdb=" O ARG G 626 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N LEU G 631 " --> pdb=" O SER G 627 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N CYS G 633 " --> pdb=" O GLN G 629 " (cutoff:3.500A) Processing helix chain 'G' and resid 821 through 828 removed outlier: 4.599A pdb=" N ALA G 825 " --> pdb=" O PRO G 821 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N VAL G 826 " --> pdb=" O CYS G 822 " (cutoff:3.500A) removed outlier: 4.358A pdb=" N LEU G 827 " --> pdb=" O TYR G 823 " (cutoff:3.500A) Proline residue: G 828 - end of helix No H-bonds generated for 'chain 'G' and resid 821 through 828' Processing helix chain 'G' and resid 875 through 901 removed outlier: 4.112A pdb=" N ARG G 880 " --> pdb=" O PRO G 876 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N ASN G 888 " --> pdb=" O LYS G 884 " (cutoff:3.500A) removed outlier: 4.408A pdb=" N GLU G 891 " --> pdb=" O GLU G 887 " (cutoff:3.500A) removed outlier: 5.116A pdb=" N LEU G 892 " --> pdb=" O ASN G 888 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N TRP G 893 " --> pdb=" O ILE G 889 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N LYS G 897 " --> pdb=" O TRP G 893 " (cutoff:3.500A) removed outlier: 4.510A pdb=" N GLU G 899 " --> pdb=" O MET G 895 " (cutoff:3.500A) removed outlier: 4.717A pdb=" N LEU G 900 " --> pdb=" O ASN G 896 " (cutoff:3.500A) removed outlier: 3.803A pdb=" N GLY G 901 " --> pdb=" O LYS G 897 " (cutoff:3.500A) Processing helix chain 'G' and resid 929 through 946 removed outlier: 4.819A pdb=" N MET G 935 " --> pdb=" O TYR G 931 " (cutoff:3.500A) removed outlier: 5.005A pdb=" N SER G 936 " --> pdb=" O ASN G 932 " (cutoff:3.500A) removed outlier: 4.531A pdb=" N LEU G 937 " --> pdb=" O LEU G 933 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLU G 938 " --> pdb=" O GLN G 934 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N THR G 939 " --> pdb=" O MET G 935 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N LEU G 940 " --> pdb=" O SER G 936 " (cutoff:3.500A) removed outlier: 3.740A pdb=" N THR G 942 " --> pdb=" O GLU G 938 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N LEU G 943 " --> pdb=" O THR G 939 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N LEU G 944 " --> pdb=" O LEU G 940 " (cutoff:3.500A) Processing helix chain 'G' and resid 989 through 1012 removed outlier: 3.624A pdb=" N ALA G 994 " --> pdb=" O PRO G 990 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N MET G 995 " --> pdb=" O SER G 991 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N VAL G 996 " --> pdb=" O GLN G 992 " (cutoff:3.500A) removed outlier: 4.755A pdb=" N ASP G 997 " --> pdb=" O GLU G 993 " (cutoff:3.500A) removed outlier: 4.284A pdb=" N LYS G 998 " --> pdb=" O ALA G 994 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N GLU G1001 " --> pdb=" O ASP G 997 " (cutoff:3.500A) removed outlier: 4.265A pdb=" N HIS G1004 " --> pdb=" O ALA G1000 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N ASP G1010 " --> pdb=" O VAL G1006 " (cutoff:3.500A) Processing helix chain 'G' and resid 1042 through 1061 removed outlier: 4.516A pdb=" N ASN G1046 " --> pdb=" O THR G1042 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N LEU G1050 " --> pdb=" O ASN G1046 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N VAL G1054 " --> pdb=" O LEU G1050 " (cutoff:3.500A) removed outlier: 4.578A pdb=" N ARG G1055 " --> pdb=" O ARG G1051 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N THR G1056 " --> pdb=" O GLU G1052 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N LEU G1057 " --> pdb=" O ALA G1053 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N GLY G1059 " --> pdb=" O ARG G1055 " (cutoff:3.500A) removed outlier: 4.066A pdb=" N TYR G1060 " --> pdb=" O THR G1056 " (cutoff:3.500A) Processing helix chain 'G' and resid 1220 through 1225 removed outlier: 5.699A pdb=" N LYS G1225 " --> pdb=" O VAL G1221 " (cutoff:3.500A) Processing helix chain 'G' and resid 1572 through 1577 removed outlier: 4.630A pdb=" N LYS G1576 " --> pdb=" O LYS G1572 " (cutoff:3.500A) removed outlier: 5.411A pdb=" N ASN G1577 " --> pdb=" O SER G1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1572 through 1577' Processing helix chain 'G' and resid 1640 through 1648 removed outlier: 4.232A pdb=" N LEU G1644 " --> pdb=" O ASP G1640 " (cutoff:3.500A) removed outlier: 4.735A pdb=" N THR G1645 " --> pdb=" O ILE G1641 " (cutoff:3.500A) removed outlier: 5.428A pdb=" N GLU G1646 " --> pdb=" O LEU G1642 " (cutoff:3.500A) removed outlier: 4.529A pdb=" N GLN G1647 " --> pdb=" O GLU G1643 " (cutoff:3.500A) removed outlier: 5.136A pdb=" N GLU G1648 " --> pdb=" O LEU G1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1640 through 1648' Processing helix chain 'G' and resid 1649 through 1666 removed outlier: 3.865A pdb=" N HIS G1654 " --> pdb=" O LEU G1650 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N LEU G1660 " --> pdb=" O HIS G1656 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N SER G1662 " --> pdb=" O LEU G1658 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N CYS G1665 " --> pdb=" O TYR G1661 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N ALA G1666 " --> pdb=" O SER G1662 " (cutoff:3.500A) Processing helix chain 'G' and resid 1669 through 1680 removed outlier: 3.631A pdb=" N HIS G1674 " --> pdb=" O HIS G1670 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N CYS G1677 " --> pdb=" O ALA G1673 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N SER G1678 " --> pdb=" O HIS G1674 " (cutoff:3.500A) removed outlier: 4.112A pdb=" N HIS G1679 " --> pdb=" O ALA G1675 " (cutoff:3.500A) Processing helix chain 'G' and resid 1681 through 1691 removed outlier: 4.275A pdb=" N LEU G1685 " --> pdb=" O ASP G1681 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N TYR G1687 " --> pdb=" O PRO G1683 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N GLU G1690 " --> pdb=" O LEU G1686 " (cutoff:3.500A) Processing helix chain 'G' and resid 1695 through 1710 removed outlier: 3.931A pdb=" N ALA G1700 " --> pdb=" O GLY G1696 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ASP G1708 " --> pdb=" O ASP G1704 " (cutoff:3.500A) Processing helix chain 'G' and resid 1711 through 1723 removed outlier: 4.662A pdb=" N THR G1716 " --> pdb=" O SER G1712 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N ALA G1717 " --> pdb=" O SER G1713 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N LEU G1719 " --> pdb=" O ALA G1715 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N MET G1721 " --> pdb=" O ALA G1717 " (cutoff:3.500A) removed outlier: 4.649A pdb=" N ASN G1722 " --> pdb=" O ARG G1718 " (cutoff:3.500A) removed outlier: 5.815A pdb=" N ASN G1723 " --> pdb=" O LEU G1719 " (cutoff:3.500A) Processing helix chain 'G' and resid 1730 through 1736 removed outlier: 3.943A pdb=" N LYS G1734 " --> pdb=" O THR G1730 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N SER G1735 " --> pdb=" O GLU G1731 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N ILE G1736 " --> pdb=" O GLU G1732 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1730 through 1736' Processing helix chain 'G' and resid 1771 through 1777 removed outlier: 4.808A pdb=" N GLN G1777 " --> pdb=" O ASN G1773 " (cutoff:3.500A) Processing helix chain 'G' and resid 1783 through 1804 removed outlier: 3.502A pdb=" N LEU G1787 " --> pdb=" O PRO G1783 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ALA G1789 " --> pdb=" O ASP G1785 " (cutoff:3.500A) removed outlier: 4.518A pdb=" N ILE G1792 " --> pdb=" O LYS G1788 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N GLN G1793 " --> pdb=" O ALA G1789 " (cutoff:3.500A) removed outlier: 4.055A pdb=" N GLU G1801 " --> pdb=" O GLU G1797 " (cutoff:3.500A) removed outlier: 5.911A pdb=" N LEU G1804 " --> pdb=" O GLN G1800 " (cutoff:3.500A) Processing helix chain 'G' and resid 1813 through 1832 removed outlier: 4.191A pdb=" N LEU G1817 " --> pdb=" O THR G1813 " (cutoff:3.500A) Proline residue: G1820 - end of helix removed outlier: 4.037A pdb=" N LEU G1824 " --> pdb=" O PRO G1820 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N MET G1831 " --> pdb=" O THR G1827 " (cutoff:3.500A) removed outlier: 4.845A pdb=" N GLY G1832 " --> pdb=" O LEU G1828 " (cutoff:3.500A) Processing helix chain 'G' and resid 1835 through 1847 removed outlier: 3.862A pdb=" N HIS G1841 " --> pdb=" O GLU G1837 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N GLN G1844 " --> pdb=" O LYS G1840 " (cutoff:3.500A) removed outlier: 4.930A pdb=" N LEU G1845 " --> pdb=" O HIS G1841 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N ILE G1846 " --> pdb=" O ILE G1842 " (cutoff:3.500A) Processing helix chain 'G' and resid 1901 through 1952 removed outlier: 4.452A pdb=" N GLN G1906 " --> pdb=" O PRO G1902 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N LEU G1909 " --> pdb=" O LEU G1905 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N TYR G1913 " --> pdb=" O LEU G1909 " (cutoff:3.500A) removed outlier: 4.009A pdb=" N ASP G1916 " --> pdb=" O GLN G1912 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N GLN G1918 " --> pdb=" O LEU G1914 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N ARG G1920 " --> pdb=" O ASP G1916 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N ALA G1928 " --> pdb=" O GLU G1924 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N ASP G1931 " --> pdb=" O VAL G1927 " (cutoff:3.500A) removed outlier: 5.150A pdb=" N ASP G1932 " --> pdb=" O ALA G1928 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N PHE G1933 " --> pdb=" O PHE G1929 " (cutoff:3.500A) removed outlier: 4.389A pdb=" N VAL G1934 " --> pdb=" O SER G1930 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N LEU G1937 " --> pdb=" O PHE G1933 " (cutoff:3.500A) removed outlier: 4.089A pdb=" N ASP G1939 " --> pdb=" O ALA G1935 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N ASN G1940 " --> pdb=" O LYS G1936 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N GLN G1941 " --> pdb=" O LEU G1937 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ARG G1942 " --> pdb=" O GLN G1938 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N ARG G1944 " --> pdb=" O ASN G1940 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N VAL G1948 " --> pdb=" O ARG G1944 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N MET G1949 " --> pdb=" O TYR G1945 " (cutoff:3.500A) Processing helix chain 'G' and resid 1990 through 1997 removed outlier: 5.326A pdb=" N ARG G1994 " --> pdb=" O PRO G1990 " (cutoff:3.500A) removed outlier: 5.586A pdb=" N GLN G1996 " --> pdb=" O GLU G1992 " (cutoff:3.500A) Processing helix chain 'G' and resid 1999 through 2011 removed outlier: 4.081A pdb=" N ILE G2010 " --> pdb=" O THR G2006 " (cutoff:3.500A) removed outlier: 5.095A pdb=" N GLU G2011 " --> pdb=" O HIS G2007 " (cutoff:3.500A) Processing helix chain 'G' and resid 2024 through 2038 removed outlier: 4.691A pdb=" N GLY G2028 " --> pdb=" O LEU G2024 " (cutoff:3.500A) removed outlier: 4.640A pdb=" N ARG G2029 " --> pdb=" O THR G2025 " (cutoff:3.500A) removed outlier: 4.186A pdb=" N LEU G2030 " --> pdb=" O ILE G2026 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N LEU G2031 " --> pdb=" O ARG G2027 " (cutoff:3.500A) removed outlier: 5.180A pdb=" N SER G2032 " --> pdb=" O GLY G2028 " (cutoff:3.500A) removed outlier: 4.105A pdb=" N THR G2038 " --> pdb=" O VAL G2034 " (cutoff:3.500A) Processing helix chain 'G' and resid 2058 through 2074 removed outlier: 3.971A pdb=" N LEU G2062 " --> pdb=" O THR G2058 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N SER G2064 " --> pdb=" O GLN G2060 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N VAL G2068 " --> pdb=" O SER G2064 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N ALA G2071 " --> pdb=" O MET G2067 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N SER G2074 " --> pdb=" O TRP G2070 " (cutoff:3.500A) Processing helix chain 'G' and resid 2078 through 2095 removed outlier: 3.790A pdb=" N VAL G2082 " --> pdb=" O ASP G2078 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ARG G2083 " --> pdb=" O PRO G2079 " (cutoff:3.500A) removed outlier: 4.051A pdb=" N LEU G2088 " --> pdb=" O ALA G2084 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N GLN G2092 " --> pdb=" O LEU G2088 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N TYR G2093 " --> pdb=" O LEU G2089 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N GLY G2095 " --> pdb=" O ARG G2091 " (cutoff:3.500A) Processing helix chain 'G' and resid 2096 through 2106 removed outlier: 3.537A pdb=" N ALA G2102 " --> pdb=" O GLY G2098 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N LEU G2103 " --> pdb=" O LEU G2099 " (cutoff:3.500A) Proline residue: G2104 - end of helix Processing helix chain 'G' and resid 2110 through 2132 removed outlier: 3.655A pdb=" N VAL G2114 " --> pdb=" O ASN G2110 " (cutoff:3.500A) removed outlier: 4.753A pdb=" N GLU G2115 " --> pdb=" O GLY G2111 " (cutoff:3.500A) removed outlier: 5.187A pdb=" N ASP G2116 " --> pdb=" O VAL G2112 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N ILE G2118 " --> pdb=" O VAL G2114 " (cutoff:3.500A) removed outlier: 4.855A pdb=" N ASN G2119 " --> pdb=" O GLU G2115 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N GLN G2126 " --> pdb=" O ALA G2122 " (cutoff:3.500A) removed outlier: 3.899A pdb=" N ILE G2127 " --> pdb=" O SER G2123 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N LEU G2131 " --> pdb=" O ILE G2127 " (cutoff:3.500A) removed outlier: 5.005A pdb=" N SER G2132 " --> pdb=" O ARG G2128 " (cutoff:3.500A) Processing helix chain 'G' and resid 2140 through 2153 removed outlier: 3.856A pdb=" N ARG G2145 " --> pdb=" O LYS G2141 " (cutoff:3.500A) Processing helix chain 'G' and resid 2159 through 2167 removed outlier: 3.621A pdb=" N ARG G2164 " --> pdb=" O PRO G2160 " (cutoff:3.500A) removed outlier: 4.242A pdb=" N GLY G2167 " --> pdb=" O MET G2163 " (cutoff:3.500A) Processing helix chain 'G' and resid 2168 through 2181 removed outlier: 3.966A pdb=" N VAL G2172 " --> pdb=" O MET G2168 " (cutoff:3.500A) removed outlier: 3.887A pdb=" N MET G2173 " --> pdb=" O HIS G2169 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N ASN G2178 " --> pdb=" O GLU G2174 " (cutoff:3.500A) removed outlier: 3.540A pdb=" N VAL G2179 " --> pdb=" O VAL G2175 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N GLY G2181 " --> pdb=" O VAL G2177 " (cutoff:3.500A) Processing helix chain 'G' and resid 2191 through 2209 removed outlier: 4.225A pdb=" N ALA G2195 " --> pdb=" O PRO G2191 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N ASN G2196 " --> pdb=" O LYS G2192 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N ARG G2199 " --> pdb=" O ALA G2195 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N PHE G2200 " --> pdb=" O ASN G2196 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N LEU G2201 " --> pdb=" O CYS G2197 " (cutoff:3.500A) removed outlier: 4.122A pdb=" N ARG G2206 " --> pdb=" O CYS G2202 " (cutoff:3.500A) removed outlier: 4.274A pdb=" N ILE G2207 " --> pdb=" O TYR G2203 " (cutoff:3.500A) removed outlier: 4.684A pdb=" N SER G2208 " --> pdb=" O PHE G2204 " (cutoff:3.500A) removed outlier: 5.283A pdb=" N ARG G2209 " --> pdb=" O CYS G2205 " (cutoff:3.500A) Processing helix chain 'G' and resid 2210 through 2220 removed outlier: 4.340A pdb=" N ASP G2217 " --> pdb=" O LYS G2213 " (cutoff:3.500A) removed outlier: 5.023A pdb=" N HIS G2218 " --> pdb=" O ALA G2214 " (cutoff:3.500A) removed outlier: 4.521A pdb=" N LEU G2219 " --> pdb=" O MET G2215 " (cutoff:3.500A) removed outlier: 4.967A pdb=" N SER G2220 " --> pdb=" O PHE G2216 " (cutoff:3.500A) Processing helix chain 'G' and resid 2221 through 2226 removed outlier: 4.249A pdb=" N ASN G2225 " --> pdb=" O TYR G2221 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N SER G2226 " --> pdb=" O LEU G2222 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 2221 through 2226' Processing helix chain 'G' and resid 2239 through 2249 removed outlier: 4.476A pdb=" N VAL G2243 " --> pdb=" O THR G2239 " (cutoff:3.500A) removed outlier: 4.998A pdb=" N ALA G2244 " --> pdb=" O PRO G2240 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N VAL G2248 " --> pdb=" O ALA G2244 " (cutoff:3.500A) Processing helix chain 'G' and resid 2251 through 2258 removed outlier: 4.060A pdb=" N ALA G2255 " --> pdb=" O ASN G2251 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N LEU G2258 " --> pdb=" O LEU G2254 " (cutoff:3.500A) Processing helix chain 'G' and resid 2259 through 2275 removed outlier: 3.864A pdb=" N LEU G2263 " --> pdb=" O ARG G2259 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N LYS G2265 " --> pdb=" O PRO G2261 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N VAL G2266 " --> pdb=" O ASP G2262 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N VAL G2267 " --> pdb=" O LEU G2263 " (cutoff:3.500A) removed outlier: 3.648A pdb=" N ALA G2271 " --> pdb=" O VAL G2267 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N GLY G2274 " --> pdb=" O LEU G2270 " (cutoff:3.500A) removed outlier: 5.819A pdb=" N LEU G2275 " --> pdb=" O ALA G2271 " (cutoff:3.500A) Processing helix chain 'G' and resid 2293 through 2308 removed outlier: 5.676A pdb=" N GLU G2297 " --> pdb=" O PRO G2293 " (cutoff:3.500A) removed outlier: 4.484A pdb=" N ARG G2298 " --> pdb=" O VAL G2294 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N TYR G2299 " --> pdb=" O GLU G2295 " (cutoff:3.500A) removed outlier: 3.766A pdb=" N ASP G2301 " --> pdb=" O GLU G2297 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N PHE G2302 " --> pdb=" O ARG G2298 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N LEU G2303 " --> pdb=" O TYR G2299 " (cutoff:3.500A) removed outlier: 4.295A pdb=" N PHE G2305 " --> pdb=" O ASP G2301 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N VAL G2307 " --> pdb=" O LEU G2303 " (cutoff:3.500A) Processing helix chain 'G' and resid 2314 through 2329 removed outlier: 4.516A pdb=" N VAL G2321 " --> pdb=" O ASN G2317 " (cutoff:3.500A) removed outlier: 4.598A pdb=" N VAL G2322 " --> pdb=" O ALA G2318 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N ARG G2323 " --> pdb=" O ASN G2319 " (cutoff:3.500A) removed outlier: 5.480A pdb=" N LEU G2324 " --> pdb=" O VAL G2320 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N ILE G2326 " --> pdb=" O VAL G2322 " (cutoff:3.500A) removed outlier: 5.140A pdb=" N ARG G2327 " --> pdb=" O ARG G2323 " (cutoff:3.500A) removed outlier: 3.774A pdb=" N ARG G2328 " --> pdb=" O LEU G2324 " (cutoff:3.500A) Proline residue: G2329 - end of helix Processing helix chain 'G' and resid 2343 through 2354 removed outlier: 3.863A pdb=" N ALA G2347 " --> pdb=" O GLY G2343 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N MET G2348 " --> pdb=" O LEU G2344 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N GLU G2349 " --> pdb=" O LEU G2345 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N GLU G2350 " --> pdb=" O ALA G2346 " (cutoff:3.500A) removed outlier: 4.843A pdb=" N ILE G2352 " --> pdb=" O MET G2348 " (cutoff:3.500A) removed outlier: 4.295A pdb=" N LYS G2353 " --> pdb=" O GLU G2349 " (cutoff:3.500A) Processing helix chain 'G' and resid 2387 through 2404 removed outlier: 4.168A pdb=" N THR G2391 " --> pdb=" O ASN G2387 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N TYR G2393 " --> pdb=" O ILE G2389 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ALA G2394 " --> pdb=" O MET G2390 " (cutoff:3.500A) removed outlier: 4.800A pdb=" N ASP G2398 " --> pdb=" O ALA G2394 " (cutoff:3.500A) removed outlier: 4.233A pdb=" N ALA G2404 " --> pdb=" O LEU G2400 " (cutoff:3.500A) Processing helix chain 'G' and resid 2408 through 2413 removed outlier: 4.023A pdb=" N ALA G2412 " --> pdb=" O HIS G2408 " (cutoff:3.500A) Processing helix chain 'G' and resid 2416 through 2427 removed outlier: 3.885A pdb=" N ILE G2420 " --> pdb=" O GLU G2416 " (cutoff:3.500A) removed outlier: 3.645A pdb=" N ARG G2421 " --> pdb=" O ALA G2417 " (cutoff:3.500A) removed outlier: 4.112A pdb=" N ARG G2425 " --> pdb=" O ARG G2421 " (cutoff:3.500A) Processing helix chain 'G' and resid 2432 through 2437 removed outlier: 4.447A pdb=" N ILE G2437 " --> pdb=" O LEU G2433 " (cutoff:3.500A) Processing helix chain 'G' and resid 2462 through 2476 removed outlier: 4.637A pdb=" N LYS G2466 " --> pdb=" O CYS G2462 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N LEU G2471 " --> pdb=" O ALA G2467 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N PHE G2472 " --> pdb=" O ALA G2468 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N VAL G2476 " --> pdb=" O PHE G2472 " (cutoff:3.500A) Processing helix chain 'G' and resid 2481 through 2489 removed outlier: 5.243A pdb=" N LEU G2485 " --> pdb=" O VAL G2481 " (cutoff:3.500A) removed outlier: 4.088A pdb=" N LEU G2486 " --> pdb=" O GLN G2482 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N LEU G2488 " --> pdb=" O PHE G2484 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N LEU G2489 " --> pdb=" O LEU G2485 " (cutoff:3.500A) Processing helix chain 'G' and resid 2492 through 2499 removed outlier: 3.943A pdb=" N ASP G2496 " --> pdb=" O GLY G2492 " (cutoff:3.500A) removed outlier: 4.539A pdb=" N LEU G2497 " --> pdb=" O PHE G2493 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N ARG G2498 " --> pdb=" O LEU G2494 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA G2499 " --> pdb=" O PRO G2495 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 2492 through 2499' Processing helix chain 'G' and resid 2511 through 2529 removed outlier: 5.137A pdb=" N ALA G2516 " --> pdb=" O ASP G2512 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LEU G2517 " --> pdb=" O MET G2513 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N ASN G2518 " --> pdb=" O ALA G2514 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N ARG G2519 " --> pdb=" O LEU G2515 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N LEU G2521 " --> pdb=" O LEU G2517 " (cutoff:3.500A) removed outlier: 5.253A pdb=" N CYS G2522 " --> pdb=" O ASN G2518 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N THR G2523 " --> pdb=" O ARG G2519 " (cutoff:3.500A) removed outlier: 5.292A pdb=" N VAL G2525 " --> pdb=" O LEU G2521 " (cutoff:3.500A) Proline residue: G2527 - end of helix Processing helix chain 'G' and resid 2538 through 2552 removed outlier: 4.070A pdb=" N HIS G2542 " --> pdb=" O GLY G2538 " (cutoff:3.500A) removed outlier: 4.694A pdb=" N ILE G2546 " --> pdb=" O HIS G2542 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N ASP G2547 " --> pdb=" O ALA G2543 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N LEU G2549 " --> pdb=" O LEU G2545 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N LEU G2550 " --> pdb=" O ILE G2546 " (cutoff:3.500A) removed outlier: 4.090A pdb=" N THR G2552 " --> pdb=" O SER G2548 " (cutoff:3.500A) Processing helix chain 'G' and resid 2561 through 2576 removed outlier: 4.238A pdb=" N ALA G2565 " --> pdb=" O SER G2561 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N GLN G2566 " --> pdb=" O LEU G2562 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ARG G2567 " --> pdb=" O THR G2563 " (cutoff:3.500A) removed outlier: 4.006A pdb=" N GLU G2571 " --> pdb=" O ARG G2567 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N VAL G2572 " --> pdb=" O ASP G2568 " (cutoff:3.500A) removed outlier: 4.830A pdb=" N LEU G2574 " --> pdb=" O ILE G2570 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N LEU G2575 " --> pdb=" O GLU G2571 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N SER G2576 " --> pdb=" O VAL G2572 " (cutoff:3.500A) Processing helix chain 'G' and resid 2584 through 2601 removed outlier: 3.950A pdb=" N HIS G2588 " --> pdb=" O SER G2584 " (cutoff:3.500A) removed outlier: 4.973A pdb=" N ARG G2591 " --> pdb=" O GLN G2587 " (cutoff:3.500A) removed outlier: 4.733A pdb=" N ARG G2592 " --> pdb=" O HIS G2588 " (cutoff:3.500A) removed outlier: 5.299A pdb=" N LEU G2593 " --> pdb=" O LEU G2589 " (cutoff:3.500A) removed outlier: 6.367A pdb=" N VAL G2594 " --> pdb=" O LEU G2590 " (cutoff:3.500A) removed outlier: 4.635A pdb=" N PHE G2595 " --> pdb=" O ARG G2591 " (cutoff:3.500A) removed outlier: 5.154A pdb=" N ASP G2596 " --> pdb=" O ARG G2592 " (cutoff:3.500A) Proline residue: G2598 - end of helix removed outlier: 5.244A pdb=" N ASN G2601 " --> pdb=" O VAL G2597 " (cutoff:3.500A) Processing helix chain 'G' and resid 2605 through 2627 removed outlier: 4.663A pdb=" N THR G2612 " --> pdb=" O LEU G2608 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N HIS G2614 " --> pdb=" O LEU G2610 " (cutoff:3.500A) removed outlier: 5.009A pdb=" N TYR G2615 " --> pdb=" O LEU G2611 " (cutoff:3.500A) removed outlier: 4.699A pdb=" N ARG G2617 " --> pdb=" O ASN G2613 " (cutoff:3.500A) removed outlier: 4.921A pdb=" N CYS G2618 " --> pdb=" O HIS G2614 " (cutoff:3.500A) removed outlier: 4.155A pdb=" N LYS G2620 " --> pdb=" O GLU G2616 " (cutoff:3.500A) removed outlier: 4.784A pdb=" N TYR G2621 " --> pdb=" O ARG G2617 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N TYR G2622 " --> pdb=" O CYS G2618 " (cutoff:3.500A) removed outlier: 4.523A pdb=" N CYS G2623 " --> pdb=" O TRP G2619 " (cutoff:3.500A) Proline residue: G2625 - end of helix Processing helix chain 'G' and resid 2635 through 2653 removed outlier: 3.606A pdb=" N LEU G2639 " --> pdb=" O SER G2635 " (cutoff:3.500A) removed outlier: 4.582A pdb=" N HIS G2640 " --> pdb=" O GLU G2636 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N LEU G2641 " --> pdb=" O GLU G2637 " (cutoff:3.500A) removed outlier: 4.550A pdb=" N SER G2642 " --> pdb=" O GLU G2638 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ARG G2643 " --> pdb=" O LEU G2639 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N LEU G2645 " --> pdb=" O LEU G2641 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N PHE G2646 " --> pdb=" O SER G2642 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N TRP G2647 " --> pdb=" O ARG G2643 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N GLY G2648 " --> pdb=" O LYS G2644 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N ASP G2651 " --> pdb=" O TRP G2647 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N ALA G2652 " --> pdb=" O GLY G2648 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N LEU G2653 " --> pdb=" O ILE G2649 " (cutoff:3.500A) Processing helix chain 'G' and resid 2660 through 2678 removed outlier: 4.807A pdb=" N LEU G2665 " --> pdb=" O GLU G2661 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N ALA G2666 " --> pdb=" O LEU G2662 " (cutoff:3.500A) Proline residue: G2668 - end of helix removed outlier: 3.595A pdb=" N SER G2671 " --> pdb=" O LEU G2667 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N LEU G2677 " --> pdb=" O VAL G2673 " (cutoff:3.500A) Proline residue: G2678 - end of helix Processing helix chain 'G' and resid 2716 through 2738 removed outlier: 4.232A pdb=" N TYR G2720 " --> pdb=" O GLU G2716 " (cutoff:3.500A) removed outlier: 4.114A pdb=" N PHE G2721 " --> pdb=" O LYS G2717 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N ASN G2723 " --> pdb=" O GLU G2719 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N LYS G2724 " --> pdb=" O TYR G2720 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ALA G2726 " --> pdb=" O ILE G2722 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N HIS G2730 " --> pdb=" O ALA G2726 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ASP G2731 " --> pdb=" O GLU G2727 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N ASP G2736 " --> pdb=" O LYS G2732 " (cutoff:3.500A) removed outlier: 4.586A pdb=" N LYS G2737 " --> pdb=" O TRP G2733 " (cutoff:3.500A) Processing helix chain 'G' and resid 2769 through 2786 Proline residue: G2775 - end of helix removed outlier: 3.590A pdb=" N SER G2779 " --> pdb=" O PRO G2775 " (cutoff:3.500A) removed outlier: 5.015A pdb=" N THR G2782 " --> pdb=" O GLU G2778 " (cutoff:3.500A) removed outlier: 5.180A pdb=" N MET G2783 " --> pdb=" O SER G2779 " (cutoff:3.500A) removed outlier: 4.468A pdb=" N LEU G2784 " --> pdb=" O LEU G2780 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N ALA G2785 " --> pdb=" O LYS G2781 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N TRP G2786 " --> pdb=" O THR G2782 " (cutoff:3.500A) Processing helix chain 'G' and resid 2836 through 2862 removed outlier: 4.735A pdb=" N ALA G2840 " --> pdb=" O ARG G2836 " (cutoff:3.500A) removed outlier: 4.165A pdb=" N MET G2841 " --> pdb=" O ASP G2837 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N MET G2844 " --> pdb=" O ALA G2840 " (cutoff:3.500A) removed outlier: 4.524A pdb=" N ALA G2854 " --> pdb=" O HIS G2850 " (cutoff:3.500A) removed outlier: 4.634A pdb=" N LYS G2855 " --> pdb=" O ASN G2851 " (cutoff:3.500A) removed outlier: 4.856A pdb=" N LYS G2858 " --> pdb=" O ALA G2854 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N LEU G2859 " --> pdb=" O LYS G2855 " (cutoff:3.500A) removed outlier: 4.226A pdb=" N GLU G2860 " --> pdb=" O LYS G2856 " (cutoff:3.500A) removed outlier: 4.757A pdb=" N LEU G2861 " --> pdb=" O LYS G2857 " (cutoff:3.500A) removed outlier: 5.056A pdb=" N GLU G2862 " --> pdb=" O LYS G2858 " (cutoff:3.500A) Processing helix chain 'G' and resid 2881 through 2901 removed outlier: 4.684A pdb=" N LYS G2885 " --> pdb=" O LYS G2881 " (cutoff:3.500A) removed outlier: 4.150A pdb=" N ASP G2886 " --> pdb=" O GLU G2882 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N GLU G2888 " --> pdb=" O ALA G2884 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N LYS G2889 " --> pdb=" O LYS G2885 " (cutoff:3.500A) removed outlier: 3.930A pdb=" N ALA G2890 " --> pdb=" O ASP G2886 " (cutoff:3.500A) removed outlier: 4.385A pdb=" N GLN G2891 " --> pdb=" O ARG G2887 " (cutoff:3.500A) removed outlier: 4.393A pdb=" N ASP G2892 " --> pdb=" O GLU G2888 " (cutoff:3.500A) removed outlier: 4.261A pdb=" N ILE G2893 " --> pdb=" O LYS G2889 " (cutoff:3.500A) removed outlier: 5.104A pdb=" N LEU G2894 " --> pdb=" O ALA G2890 " (cutoff:3.500A) removed outlier: 4.114A pdb=" N LEU G2897 " --> pdb=" O ILE G2893 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N GLN G2898 " --> pdb=" O LEU G2894 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N ILE G2899 " --> pdb=" O LYS G2895 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N ASN G2900 " --> pdb=" O PHE G2896 " (cutoff:3.500A) Processing helix chain 'G' and resid 2982 through 3004 removed outlier: 3.972A pdb=" N ARG G2989 " --> pdb=" O SER G2985 " (cutoff:3.500A) Proline residue: G2990 - end of helix removed outlier: 3.537A pdb=" N SER G2998 " --> pdb=" O GLY G2994 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N GLU G3001 " --> pdb=" O ALA G2997 " (cutoff:3.500A) removed outlier: 4.755A pdb=" N LYS G3002 " --> pdb=" O SER G2998 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N GLU G3003 " --> pdb=" O ASN G2999 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N MET G3004 " --> pdb=" O LYS G3000 " (cutoff:3.500A) Processing helix chain 'G' and resid 3009 through 3028 removed outlier: 3.894A pdb=" N GLY G3013 " --> pdb=" O PHE G3009 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N LEU G3015 " --> pdb=" O LYS G3011 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N HIS G3018 " --> pdb=" O VAL G3014 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ARG G3019 " --> pdb=" O LEU G3015 " (cutoff:3.500A) removed outlier: 4.655A pdb=" N ILE G3020 " --> pdb=" O VAL G3016 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N SER G3021 " --> pdb=" O ARG G3017 " (cutoff:3.500A) removed outlier: 4.444A pdb=" N LEU G3022 " --> pdb=" O HIS G3018 " (cutoff:3.500A) removed outlier: 5.499A pdb=" N PHE G3023 " --> pdb=" O ARG G3019 " (cutoff:3.500A) removed outlier: 4.272A pdb=" N GLY G3024 " --> pdb=" O ILE G3020 " (cutoff:3.500A) Processing helix chain 'G' and resid 3035 through 3052 removed outlier: 4.496A pdb=" N GLN G3039 " --> pdb=" O HIS G3035 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N ASP G3042 " --> pdb=" O GLY G3038 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N ARG G3044 " --> pdb=" O THR G3040 " (cutoff:3.500A) removed outlier: 4.696A pdb=" N THR G3045 " --> pdb=" O LEU G3041 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N VAL G3046 " --> pdb=" O ASP G3042 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N MET G3047 " --> pdb=" O ALA G3043 " (cutoff:3.500A) removed outlier: 3.608A pdb=" N THR G3049 " --> pdb=" O THR G3045 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N GLU G3052 " --> pdb=" O LYS G3048 " (cutoff:3.500A) Processing helix chain 'G' and resid 3062 through 3082 removed outlier: 4.743A pdb=" N ALA G3066 " --> pdb=" O LEU G3062 " (cutoff:3.500A) removed outlier: 5.788A pdb=" N ASP G3068 " --> pdb=" O ASN G3064 " (cutoff:3.500A) removed outlier: 7.554A pdb=" N LEU G3069 " --> pdb=" O ALA G3065 " (cutoff:3.500A) removed outlier: 5.715A pdb=" N GLU G3070 " --> pdb=" O ALA G3066 " (cutoff:3.500A) removed outlier: 3.861A pdb=" N THR G3072 " --> pdb=" O ASP G3068 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N MET G3073 " --> pdb=" O LEU G3069 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N GLU G3074 " --> pdb=" O GLU G3070 " (cutoff:3.500A) removed outlier: 3.681A pdb=" N ASN G3075 " --> pdb=" O LYS G3071 " (cutoff:3.500A) removed outlier: 3.958A pdb=" N LYS G3077 " --> pdb=" O MET G3073 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N PHE G3081 " --> pdb=" O LYS G3077 " (cutoff:3.500A) removed outlier: 4.904A pdb=" N THR G3082 " --> pdb=" O GLN G3078 " (cutoff:3.500A) Processing helix chain 'G' and resid 3102 through 3114 removed outlier: 5.215A pdb=" N LEU G3106 " --> pdb=" O LEU G3102 " (cutoff:3.500A) removed outlier: 4.137A pdb=" N SER G3107 " --> pdb=" O LEU G3103 " (cutoff:3.500A) removed outlier: 4.393A pdb=" N SER G3108 " --> pdb=" O PRO G3104 " (cutoff:3.500A) removed outlier: 4.288A pdb=" N LEU G3109 " --> pdb=" O MET G3105 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N PHE G3110 " --> pdb=" O LEU G3106 " (cutoff:3.500A) Processing helix chain 'G' and resid 3124 through 3142 removed outlier: 3.850A pdb=" N GLN G3128 " --> pdb=" O LEU G3124 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N SER G3130 " --> pdb=" O ASP G3126 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N ARG G3133 " --> pdb=" O VAL G3129 " (cutoff:3.500A) removed outlier: 4.615A pdb=" N LEU G3138 " --> pdb=" O ILE G3134 " (cutoff:3.500A) removed outlier: 4.990A pdb=" N TYR G3139 " --> pdb=" O LEU G3135 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N ALA G3140 " --> pdb=" O THR G3136 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N LEU G3141 " --> pdb=" O SER G3137 " (cutoff:3.500A) Processing helix chain 'G' and resid 3150 through 3166 removed outlier: 4.645A pdb=" N SER G3154 " --> pdb=" O GLU G3150 " (cutoff:3.500A) removed outlier: 4.582A pdb=" N ALA G3155 " --> pdb=" O ARG G3151 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N LEU G3156 " --> pdb=" O GLN G3152 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N GLU G3158 " --> pdb=" O SER G3154 " (cutoff:3.500A) removed outlier: 6.419A pdb=" N GLY G3165 " --> pdb=" O ALA G3161 " (cutoff:3.500A) removed outlier: 4.576A pdb=" N ALA G3166 " --> pdb=" O ALA G3162 " (cutoff:3.500A) Processing helix chain 'G' and resid 3170 through 3182 removed outlier: 3.990A pdb=" N THR G3174 " --> pdb=" O ALA G3170 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N LEU G3176 " --> pdb=" O LEU G3172 " (cutoff:3.500A) removed outlier: 4.682A pdb=" N ASP G3177 " --> pdb=" O GLU G3173 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N LYS G3178 " --> pdb=" O THR G3174 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ASN G3180 " --> pdb=" O LEU G3176 " (cutoff:3.500A) removed outlier: 5.042A pdb=" N ILE G3181 " --> pdb=" O ASP G3177 " (cutoff:3.500A) removed outlier: 4.663A pdb=" N TYR G3182 " --> pdb=" O LYS G3178 " (cutoff:3.500A) Processing helix chain 'G' and resid 3591 through 3606 removed outlier: 3.802A pdb=" N GLN G3595 " --> pdb=" O LEU G3591 " (cutoff:3.500A) removed outlier: 4.438A pdb=" N ARG G3596 " --> pdb=" O LEU G3592 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N LYS G3597 " --> pdb=" O SER G3593 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N ALA G3599 " --> pdb=" O GLN G3595 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N ALA G3602 " --> pdb=" O ARG G3598 " (cutoff:3.500A) removed outlier: 4.225A pdb=" N ARG G3605 " --> pdb=" O VAL G3601 " (cutoff:3.500A) Processing helix chain 'G' and resid 3613 through 3632 removed outlier: 3.949A pdb=" N ALA G3617 " --> pdb=" O PRO G3613 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N LYS G3627 " --> pdb=" O GLN G3623 " (cutoff:3.500A) removed outlier: 4.947A pdb=" N ILE G3630 " --> pdb=" O GLU G3626 " (cutoff:3.500A) removed outlier: 5.579A pdb=" N GLU G3631 " --> pdb=" O LYS G3627 " (cutoff:3.500A) removed outlier: 5.520A pdb=" N THR G3632 " --> pdb=" O SER G3628 " (cutoff:3.500A) Processing helix chain 'G' and resid 3637 through 3647 removed outlier: 4.187A pdb=" N ILE G3642 " --> pdb=" O GLU G3638 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N ALA G3646 " --> pdb=" O ILE G3642 " (cutoff:3.500A) removed outlier: 4.535A pdb=" N LYS G3647 " --> pdb=" O GLU G3643 " (cutoff:3.500A) Processing helix chain 'G' and resid 3663 through 3678 removed outlier: 3.701A pdb=" N LEU G3668 " --> pdb=" O PRO G3664 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N THR G3678 " --> pdb=" O ARG G3674 " (cutoff:3.500A) Processing helix chain 'G' and resid 3686 through 3700 removed outlier: 3.621A pdb=" N MET G3690 " --> pdb=" O ASP G3686 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N ALA G3691 " --> pdb=" O PHE G3687 " (cutoff:3.500A) removed outlier: 5.277A pdb=" N ASP G3694 " --> pdb=" O MET G3690 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ILE G3695 " --> pdb=" O ALA G3691 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N MET G3696 " --> pdb=" O TYR G3692 " (cutoff:3.500A) removed outlier: 4.941A pdb=" N ALA G3697 " --> pdb=" O ALA G3693 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N SER G3699 " --> pdb=" O ILE G3695 " (cutoff:3.500A) removed outlier: 5.590A pdb=" N CYS G3700 " --> pdb=" O MET G3696 " (cutoff:3.500A) Processing helix chain 'G' and resid 3714 through 3734 removed outlier: 4.858A pdb=" N LYS G3718 " --> pdb=" O SER G3714 " (cutoff:3.500A) removed outlier: 4.396A pdb=" N LYS G3722 " --> pdb=" O LYS G3718 " (cutoff:3.500A) removed outlier: 4.194A pdb=" N LEU G3725 " --> pdb=" O GLU G3721 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N TYR G3727 " --> pdb=" O GLN G3723 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N ALA G3730 " --> pdb=" O LEU G3726 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N LEU G3732 " --> pdb=" O GLN G3728 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N ASP G3734 " --> pdb=" O ALA G3730 " (cutoff:3.500A) Processing helix chain 'G' and resid 3736 through 3749 removed outlier: 3.507A pdb=" N MET G3740 " --> pdb=" O GLY G3736 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N VAL G3741 " --> pdb=" O ALA G3737 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N LEU G3742 " --> pdb=" O ALA G3738 " (cutoff:3.500A) removed outlier: 4.100A pdb=" N THR G3744 " --> pdb=" O MET G3740 " (cutoff:3.500A) removed outlier: 4.327A pdb=" N ILE G3745 " --> pdb=" O VAL G3741 " (cutoff:3.500A) removed outlier: 4.213A pdb=" N SER G3746 " --> pdb=" O LEU G3742 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N SER G3748 " --> pdb=" O THR G3744 " (cutoff:3.500A) removed outlier: 4.842A pdb=" N LYS G3749 " --> pdb=" O ILE G3745 " (cutoff:3.500A) Processing helix chain 'G' and resid 3753 through 3768 removed outlier: 3.686A pdb=" N ALA G3758 " --> pdb=" O PRO G3754 " (cutoff:3.500A) removed outlier: 5.443A pdb=" N LYS G3761 " --> pdb=" O ALA G3757 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N LEU G3762 " --> pdb=" O ALA G3758 " (cutoff:3.500A) removed outlier: 4.098A pdb=" N GLY G3763 " --> pdb=" O THR G3759 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N ILE G3766 " --> pdb=" O LEU G3762 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N LEU G3767 " --> pdb=" O GLY G3763 " (cutoff:3.500A) Processing helix chain 'G' and resid 3771 through 3786 removed outlier: 3.754A pdb=" N GLN G3775 " --> pdb=" O ASN G3771 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N GLN G3776 " --> pdb=" O SER G3772 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N LEU G3779 " --> pdb=" O GLN G3775 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU G3782 " --> pdb=" O MET G3778 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N LYS G3785 " --> pdb=" O TYR G3781 " (cutoff:3.500A) removed outlier: 5.011A pdb=" N LYS G3786 " --> pdb=" O LEU G3782 " (cutoff:3.500A) Processing helix chain 'G' and resid 3787 through 3801 removed outlier: 4.771A pdb=" N PHE G3791 " --> pdb=" O ASP G3787 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N SER G3800 " --> pdb=" O GLY G3796 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N CYS G3801 " --> pdb=" O LEU G3797 " (cutoff:3.500A) Processing helix chain 'G' and resid 3805 through 3819 removed outlier: 3.837A pdb=" N PHE G3809 " --> pdb=" O ASP G3805 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N ARG G3811 " --> pdb=" O ASN G3807 " (cutoff:3.500A) removed outlier: 3.533A pdb=" N GLU G3816 " --> pdb=" O GLN G3812 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N GLY G3817 " --> pdb=" O ASN G3813 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N LEU G3818 " --> pdb=" O LYS G3814 " (cutoff:3.500A) Processing helix chain 'G' and resid 3829 through 3849 removed outlier: 4.304A pdb=" N ASP G3833 " --> pdb=" O LYS G3829 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N ASP G3834 " --> pdb=" O VAL G3830 " (cutoff:3.500A) removed outlier: 6.992A pdb=" N GLU G3835 " --> pdb=" O LEU G3831 " (cutoff:3.500A) removed outlier: 6.652A pdb=" N PHE G3836 " --> pdb=" O GLN G3832 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N THR G3837 " --> pdb=" O ASP G3833 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N ASP G3839 " --> pdb=" O GLU G3835 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N PHE G3841 " --> pdb=" O THR G3837 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N LEU G3847 " --> pdb=" O PHE G3843 " (cutoff:3.500A) removed outlier: 4.191A pdb=" N CYS G3848 " --> pdb=" O LEU G3844 " (cutoff:3.500A) Processing helix chain 'G' and resid 3852 through 3861 removed outlier: 4.170A pdb=" N ASN G3857 " --> pdb=" O SER G3853 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N LEU G3859 " --> pdb=" O PHE G3855 " (cutoff:3.500A) removed outlier: 4.738A pdb=" N ARG G3860 " --> pdb=" O GLN G3856 " (cutoff:3.500A) Processing helix chain 'G' and resid 3870 through 3894 removed outlier: 3.806A pdb=" N LEU G3879 " --> pdb=" O THR G3875 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ARG G3881 " --> pdb=" O ASP G3877 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N SER G3885 " --> pdb=" O ARG G3881 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N TYR G3890 " --> pdb=" O ILE G3886 " (cutoff:3.500A) Processing helix chain 'G' and resid 3900 through 3926 removed outlier: 3.928A pdb=" N ASN G3906 " --> pdb=" O GLN G3902 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N PHE G3907 " --> pdb=" O GLY G3903 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N LYS G3909 " --> pdb=" O ARG G3905 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N ALA G3910 " --> pdb=" O ASN G3906 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N VAL G3913 " --> pdb=" O LYS G3909 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N ALA G3914 " --> pdb=" O ALA G3910 " (cutoff:3.500A) removed outlier: 4.207A pdb=" N TYR G3924 " --> pdb=" O THR G3920 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N ILE G3925 " --> pdb=" O LEU G3921 " (cutoff:3.500A) Processing helix chain 'G' and resid 3929 through 3940 removed outlier: 3.587A pdb=" N GLN G3933 " --> pdb=" O CYS G3929 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N LEU G3936 " --> pdb=" O ASN G3932 " (cutoff:3.500A) removed outlier: 4.323A pdb=" N SER G3939 " --> pdb=" O SER G3935 " (cutoff:3.500A) removed outlier: 5.252A pdb=" N ARG G3940 " --> pdb=" O LEU G3936 " (cutoff:3.500A) Processing helix chain 'G' and resid 3941 through 3959 removed outlier: 3.562A pdb=" N HIS G3950 " --> pdb=" O VAL G3946 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N HIS G3954 " --> pdb=" O HIS G3950 " (cutoff:3.500A) removed outlier: 4.407A pdb=" N MET G3957 " --> pdb=" O ALA G3953 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N LYS G3958 " --> pdb=" O HIS G3954 " (cutoff:3.500A) Processing helix chain 'G' and resid 3964 through 3989 removed outlier: 4.602A pdb=" N LEU G3968 " --> pdb=" O SER G3964 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N LYS G3970 " --> pdb=" O ILE G3966 " (cutoff:3.500A) removed outlier: 4.254A pdb=" N GLU G3971 " --> pdb=" O GLU G3967 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N VAL G3980 " --> pdb=" O GLN G3976 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N MET G3982 " --> pdb=" O ASP G3978 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N LEU G3983 " --> pdb=" O MET G3979 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N LEU G3987 " --> pdb=" O LEU G3983 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N GLU G3988 " --> pdb=" O LEU G3984 " (cutoff:3.500A) removed outlier: 5.908A pdb=" N GLY G3989 " --> pdb=" O SER G3985 " (cutoff:3.500A) Processing helix chain 'G' and resid 3994 through 4008 removed outlier: 3.565A pdb=" N VAL G4001 " --> pdb=" O GLY G3997 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N SER G4007 " --> pdb=" O MET G4003 " (cutoff:3.500A) Processing helix chain 'G' and resid 4009 through 4030 removed outlier: 4.562A pdb=" N MET G4013 " --> pdb=" O ASN G4009 " (cutoff:3.500A) removed outlier: 4.315A pdb=" N ILE G4014 " --> pdb=" O ASN G4010 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N LEU G4015 " --> pdb=" O VAL G4011 " (cutoff:3.500A) removed outlier: 4.124A pdb=" N MET G4020 " --> pdb=" O LYS G4016 " (cutoff:3.500A) removed outlier: 4.090A pdb=" N PHE G4021 " --> pdb=" O PHE G4017 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N LYS G4023 " --> pdb=" O ASP G4019 " (cutoff:3.500A) removed outlier: 3.987A pdb=" N LEU G4024 " --> pdb=" O MET G4020 " (cutoff:3.500A) removed outlier: 4.560A pdb=" N LYS G4025 " --> pdb=" O PHE G4021 " (cutoff:3.500A) removed outlier: 5.001A pdb=" N ASP G4026 " --> pdb=" O LEU G4022 " (cutoff:3.500A) Processing helix chain 'G' and resid 4031 through 4036 removed outlier: 4.262A pdb=" N TYR G4036 " --> pdb=" O THR G4032 " (cutoff:3.500A) Processing helix chain 'G' and resid 4045 through 4057 removed outlier: 4.418A pdb=" N PHE G4049 " --> pdb=" O SER G4045 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N HIS G4056 " --> pdb=" O ALA G4052 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N LYS G4057 " --> pdb=" O MET G4053 " (cutoff:3.500A) Processing helix chain 'G' and resid 4060 through 4069 removed outlier: 4.065A pdb=" N GLU G4065 " --> pdb=" O GLN G4061 " (cutoff:3.500A) removed outlier: 4.597A pdb=" N PHE G4066 " --> pdb=" O SER G4062 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N LEU G4068 " --> pdb=" O THR G4064 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N SER G4069 " --> pdb=" O GLU G4065 " (cutoff:3.500A) Processing helix chain 'G' and resid 4081 through 4110 removed outlier: 4.025A pdb=" N VAL G4085 " --> pdb=" O TYR G4081 " (cutoff:3.500A) removed outlier: 5.019A pdb=" N GLU G4090 " --> pdb=" O LYS G4086 " (cutoff:3.500A) Proline residue: G4091 - end of helix removed outlier: 4.316A pdb=" N ASP G4094 " --> pdb=" O GLU G4090 " (cutoff:3.500A) removed outlier: 5.664A pdb=" N ILE G4095 " --> pdb=" O PRO G4091 " (cutoff:3.500A) removed outlier: 5.251A pdb=" N GLY G4096 " --> pdb=" O ALA G4092 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N PHE G4097 " --> pdb=" O LYS G4093 " (cutoff:3.500A) removed outlier: 4.229A pdb=" N ASN G4098 " --> pdb=" O ASP G4094 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N VAL G4099 " --> pdb=" O ILE G4095 " (cutoff:3.500A) Processing helix chain 'G' and resid 4113 through 4124 removed outlier: 3.840A pdb=" N GLN G4117 " --> pdb=" O ASP G4113 " (cutoff:3.500A) removed outlier: 4.203A pdb=" N THR G4118 " --> pdb=" O THR G4114 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N PHE G4119 " --> pdb=" O ARG G4115 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N LEU G4122 " --> pdb=" O THR G4118 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLU G4124 " --> pdb=" O LEU G4120 " (cutoff:3.500A) Processing helix chain 'G' and resid 4125 through 4132 removed outlier: 4.389A pdb=" N TYR G4129 " --> pdb=" O SER G4125 " (cutoff:3.500A) removed outlier: 4.076A pdb=" N GLN G4131 " --> pdb=" O LEU G4127 " (cutoff:3.500A) Proline residue: G4132 - end of helix Processing helix chain 'G' and resid 4154 through 4163 removed outlier: 3.770A pdb=" N ARG G4158 " --> pdb=" O SER G4154 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N THR G4159 " --> pdb=" O GLU G4155 " (cutoff:3.500A) removed outlier: 4.978A pdb=" N GLN G4160 " --> pdb=" O SER G4156 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N TRP G4161 " --> pdb=" O SER G4157 " (cutoff:3.500A) removed outlier: 4.686A pdb=" N GLU G4162 " --> pdb=" O ARG G4158 " (cutoff:3.500A) removed outlier: 5.062A pdb=" N LYS G4163 " --> pdb=" O THR G4159 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4154 through 4163' Processing helix chain 'G' and resid 4164 through 4180 removed outlier: 3.989A pdb=" N SER G4169 " --> pdb=" O GLN G4165 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N PHE G4173 " --> pdb=" O SER G4169 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N PHE G4175 " --> pdb=" O ARG G4171 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N ASP G4176 " --> pdb=" O GLN G4172 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ASN G4179 " --> pdb=" O PHE G4175 " (cutoff:3.500A) Processing helix chain 'G' and resid 4185 through 4207 removed outlier: 3.958A pdb=" N ASP G4196 " --> pdb=" O ASN G4192 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N PHE G4199 " --> pdb=" O GLU G4195 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N ALA G4205 " --> pdb=" O MET G4201 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N GLN G4206 " --> pdb=" O GLN G4202 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N ILE G4207 " --> pdb=" O LEU G4203 " (cutoff:3.500A) Processing helix chain 'G' and resid 4486 through 4500 removed outlier: 4.009A pdb=" N LYS G4491 " --> pdb=" O ALA G4487 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N ALA G4497 " --> pdb=" O LEU G4493 " (cutoff:3.500A) removed outlier: 4.149A pdb=" N ARG G4498 " --> pdb=" O ASN G4494 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N PHE G4500 " --> pdb=" O PHE G4496 " (cutoff:3.500A) Processing helix chain 'G' and resid 4501 through 4521 removed outlier: 4.131A pdb=" N MET G4505 " --> pdb=" O TYR G4501 " (cutoff:3.500A) removed outlier: 4.910A pdb=" N LEU G4506 " --> pdb=" O ASN G4502 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N LEU G4508 " --> pdb=" O ARG G4504 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N PHE G4509 " --> pdb=" O MET G4505 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N ALA G4511 " --> pdb=" O ALA G4507 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N ALA G4513 " --> pdb=" O PHE G4509 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N ASN G4515 " --> pdb=" O ALA G4511 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N ILE G4517 " --> pdb=" O ALA G4513 " (cutoff:3.500A) removed outlier: 4.495A pdb=" N LEU G4519 " --> pdb=" O ASN G4515 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N PHE G4520 " --> pdb=" O PHE G4516 " (cutoff:3.500A) removed outlier: 4.598A pdb=" N TYR G4521 " --> pdb=" O ILE G4517 " (cutoff:3.500A) Processing helix chain 'G' and resid 4568 through 4613 removed outlier: 4.980A pdb=" N THR G4572 " --> pdb=" O TYR G4568 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N LEU G4573 " --> pdb=" O MET G4569 " (cutoff:3.500A) removed outlier: 3.966A pdb=" N LEU G4576 " --> pdb=" O THR G4572 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N ILE G4578 " --> pdb=" O ARG G4574 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N THR G4581 " --> pdb=" O ALA G4577 " (cutoff:3.500A) removed outlier: 4.415A pdb=" N ILE G4588 " --> pdb=" O SER G4584 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N TYR G4591 " --> pdb=" O CYS G4587 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU G4594 " --> pdb=" O GLY G4590 " (cutoff:3.500A) removed outlier: 5.209A pdb=" N VAL G4596 " --> pdb=" O TYR G4592 " (cutoff:3.500A) Proline residue: G4597 - end of helix removed outlier: 3.535A pdb=" N ARG G4603 " --> pdb=" O VAL G4599 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N GLU G4606 " --> pdb=" O LYS G4602 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N GLU G4612 " --> pdb=" O ALA G4608 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N PHE G4613 " --> pdb=" O ARG G4609 " (cutoff:3.500A) Processing helix chain 'G' and resid 4626 through 4638 removed outlier: 3.758A pdb=" N ARG G4633 " --> pdb=" O GLY G4629 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N LEU G4634 " --> pdb=" O GLN G4630 " (cutoff:3.500A) removed outlier: 4.666A pdb=" N VAL G4635 " --> pdb=" O TRP G4631 " (cutoff:3.500A) removed outlier: 4.217A pdb=" N ILE G4636 " --> pdb=" O ASP G4632 " (cutoff:3.500A) removed outlier: 4.672A pdb=" N ASN G4637 " --> pdb=" O ARG G4633 " (cutoff:3.500A) removed outlier: 5.070A pdb=" N THR G4638 " --> pdb=" O LEU G4634 " (cutoff:3.500A) Processing helix chain 'G' and resid 4649 through 4658 removed outlier: 3.692A pdb=" N LYS G4653 " --> pdb=" O PHE G4649 " (cutoff:3.500A) removed outlier: 4.472A pdb=" N MET G4655 " --> pdb=" O LYS G4651 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N ASP G4656 " --> pdb=" O ARG G4652 " (cutoff:3.500A) Processing helix chain 'G' and resid 4663 through 4672 removed outlier: 3.540A pdb=" N ILE G4667 " --> pdb=" O GLY G4663 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N SER G4668 " --> pdb=" O ARG G4664 " (cutoff:3.500A) Processing helix chain 'G' and resid 4703 through 4717 removed outlier: 3.507A pdb=" N TRP G4709 " --> pdb=" O LYS G4705 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N GLY G4712 " --> pdb=" O MET G4708 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N VAL G4713 " --> pdb=" O TRP G4709 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N THR G4716 " --> pdb=" O GLY G4712 " (cutoff:3.500A) Processing helix chain 'G' and resid 4718 through 4736 removed outlier: 3.783A pdb=" N TYR G4722 " --> pdb=" O ASN G4718 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N MET G4727 " --> pdb=" O LEU G4723 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N MET G4729 " --> pdb=" O TRP G4725 " (cutoff:3.500A) removed outlier: 4.133A pdb=" N SER G4730 " --> pdb=" O TYR G4726 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LEU G4732 " --> pdb=" O THR G4728 " (cutoff:3.500A) removed outlier: 4.351A pdb=" N HIS G4734 " --> pdb=" O SER G4730 " (cutoff:3.500A) removed outlier: 4.139A pdb=" N TYR G4735 " --> pdb=" O VAL G4731 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N ASN G4736 " --> pdb=" O LEU G4732 " (cutoff:3.500A) Processing helix chain 'G' and resid 4738 through 4751 removed outlier: 4.878A pdb=" N ALA G4742 " --> pdb=" O PHE G4738 " (cutoff:3.500A) removed outlier: 4.827A pdb=" N HIS G4743 " --> pdb=" O PHE G4739 " (cutoff:3.500A) removed outlier: 4.676A pdb=" N LEU G4744 " --> pdb=" O PHE G4740 " (cutoff:3.500A) removed outlier: 5.237A pdb=" N LEU G4745 " --> pdb=" O ALA G4741 " (cutoff:3.500A) removed outlier: 5.543A pdb=" N ASP G4746 " --> pdb=" O ALA G4742 " (cutoff:3.500A) removed outlier: 4.952A pdb=" N ILE G4747 " --> pdb=" O HIS G4743 " (cutoff:3.500A) removed outlier: 4.571A pdb=" N ALA G4748 " --> pdb=" O LEU G4744 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N MET G4749 " --> pdb=" O LEU G4745 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N GLY G4750 " --> pdb=" O ASP G4746 " (cutoff:3.500A) Processing helix chain 'G' and resid 4752 through 4763 removed outlier: 4.549A pdb=" N ILE G4757 " --> pdb=" O THR G4753 " (cutoff:3.500A) removed outlier: 4.854A pdb=" N THR G4762 " --> pdb=" O LEU G4758 " (cutoff:3.500A) Processing helix chain 'G' and resid 4764 through 4789 removed outlier: 3.597A pdb=" N LEU G4768 " --> pdb=" O ASN G4764 " (cutoff:3.500A) removed outlier: 4.579A pdb=" N LEU G4770 " --> pdb=" O LYS G4766 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N LEU G4774 " --> pdb=" O LEU G4770 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N VAL G4777 " --> pdb=" O GLY G4773 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N TYR G4780 " --> pdb=" O ALA G4776 " (cutoff:3.500A) removed outlier: 3.830A pdb=" N VAL G4785 " --> pdb=" O LEU G4781 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N ALA G4786 " --> pdb=" O TYR G4782 " (cutoff:3.500A) Processing helix chain 'G' and resid 4809 through 4824 removed outlier: 3.544A pdb=" N MET G4815 " --> pdb=" O LEU G4811 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N PHE G4816 " --> pdb=" O THR G4812 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N VAL G4822 " --> pdb=" O MET G4818 " (cutoff:3.500A) removed outlier: 4.574A pdb=" N ARG G4823 " --> pdb=" O TYR G4819 " (cutoff:3.500A) Processing helix chain 'G' and resid 4828 through 4833 removed outlier: 4.188A pdb=" N ILE G4832 " --> pdb=" O ILE G4828 " (cutoff:3.500A) removed outlier: 6.805A pdb=" N GLU G4833 " --> pdb=" O GLY G4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4828 through 4833' Processing helix chain 'G' and resid 4840 through 4855 removed outlier: 3.934A pdb=" N PHE G4847 " --> pdb=" O TYR G4843 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N THR G4850 " --> pdb=" O ILE G4846 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N PHE G4851 " --> pdb=" O PHE G4847 " (cutoff:3.500A) Processing helix chain 'G' and resid 4859 through 4888 removed outlier: 3.808A pdb=" N ILE G4863 " --> pdb=" O LEU G4859 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N GLN G4864 " --> pdb=" O LEU G4860 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N LEU G4866 " --> pdb=" O ILE G4862 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N ILE G4867 " --> pdb=" O ILE G4863 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N ALA G4870 " --> pdb=" O LEU G4866 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N PHE G4871 " --> pdb=" O ILE G4867 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N GLU G4873 " --> pdb=" O ASP G4869 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N ARG G4875 " --> pdb=" O PHE G4871 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N GLN G4878 " --> pdb=" O LEU G4874 " (cutoff:3.500A) Processing helix chain 'G' and resid 4895 through 4900 removed outlier: 4.096A pdb=" N PHE G4899 " --> pdb=" O GLY G4895 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ASP G4900 " --> pdb=" O ASN G4896 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4895 through 4900' Processing helix chain 'G' and resid 4904 through 4912 removed outlier: 3.521A pdb=" N HIS G4909 " --> pdb=" O GLY G4905 " (cutoff:3.500A) Processing helix chain 'G' and resid 4915 through 4929 removed outlier: 4.000A pdb=" N TYR G4919 " --> pdb=" O ASN G4915 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N LEU G4920 " --> pdb=" O LEU G4916 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N LEU G4923 " --> pdb=" O TYR G4919 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N ILE G4927 " --> pdb=" O LEU G4923 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N ASN G4928 " --> pdb=" O MET G4924 " (cutoff:3.500A) Processing helix chain 'G' and resid 4935 through 4948 removed outlier: 3.706A pdb=" N SER G4939 " --> pdb=" O THR G4935 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N TYR G4940 " --> pdb=" O GLY G4936 " (cutoff:3.500A) removed outlier: 4.227A pdb=" N TRP G4942 " --> pdb=" O GLU G4938 " (cutoff:3.500A) Processing helix chain 'G' and resid 4958 through 4963 removed outlier: 6.019A pdb=" N GLN G4962 " --> pdb=" O CYS G4958 " (cutoff:3.500A) Processing helix chain 'G' and resid 398 through 403 removed outlier: 4.200A pdb=" N ASP G 401 " --> pdb=" O HIS G 398 " (cutoff:3.500A) removed outlier: 4.448A pdb=" N GLY G 402 " --> pdb=" O MET G 399 " (cutoff:3.500A) removed outlier: 4.764A pdb=" N LEU G 403 " --> pdb=" O ASP G 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 398 through 403' Processing helix chain 'G' and resid 2708 through 2713 removed outlier: 4.582A pdb=" N ASN G2711 " --> pdb=" O ASP G2708 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ILE G2712 " --> pdb=" O THR G2709 " (cutoff:3.500A) removed outlier: 5.337A pdb=" N THR G2713 " --> pdb=" O SER G2710 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 2708 through 2713' Processing helix chain 'J' and resid 51 through 56 removed outlier: 5.703A pdb=" N SER J 55 " --> pdb=" O SER J 51 " (cutoff:3.500A) removed outlier: 5.956A pdb=" N LYS J 56 " --> pdb=" O THR J 52 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 51 through 56' Processing helix chain 'J' and resid 61 through 66 removed outlier: 5.303A pdb=" N CYS J 65 " --> pdb=" O ASP J 61 " (cutoff:3.500A) Processing helix chain 'J' and resid 74 through 84 Processing helix chain 'J' and resid 265 through 271 removed outlier: 4.495A pdb=" N VAL J 269 " --> pdb=" O GLY J 265 " (cutoff:3.500A) removed outlier: 4.944A pdb=" N ALA J 271 " --> pdb=" O VAL J 267 " (cutoff:3.500A) Processing helix chain 'J' and resid 409 through 438 removed outlier: 3.804A pdb=" N ARG J 420 " --> pdb=" O ALA J 416 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N THR J 422 " --> pdb=" O VAL J 418 " (cutoff:3.500A) removed outlier: 4.042A pdb=" N LEU J 425 " --> pdb=" O SER J 421 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N ARG J 428 " --> pdb=" O PHE J 424 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N GLY J 432 " --> pdb=" O ARG J 428 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N LEU J 433 " --> pdb=" O PHE J 429 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N LEU J 436 " --> pdb=" O GLY J 432 " (cutoff:3.500A) removed outlier: 4.306A pdb=" N LYS J 438 " --> pdb=" O ASP J 434 " (cutoff:3.500A) Processing helix chain 'J' and resid 448 through 464 removed outlier: 4.190A pdb=" N VAL J 452 " --> pdb=" O PRO J 448 " (cutoff:3.500A) removed outlier: 3.650A pdb=" N LEU J 454 " --> pdb=" O GLU J 450 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N SER J 455 " --> pdb=" O SER J 451 " (cutoff:3.500A) removed outlier: 4.435A pdb=" N GLN J 457 " --> pdb=" O SER J 453 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N ASP J 458 " --> pdb=" O LEU J 454 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N LEU J 459 " --> pdb=" O SER J 455 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N PHE J 463 " --> pdb=" O LEU J 459 " (cutoff:3.500A) Processing helix chain 'J' and resid 471 through 493 removed outlier: 3.859A pdb=" N GLN J 476 " --> pdb=" O HIS J 472 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N ASN J 477 " --> pdb=" O GLU J 473 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N PHE J 489 " --> pdb=" O ARG J 485 " (cutoff:3.500A) removed outlier: 4.577A pdb=" N GLU J 492 " --> pdb=" O LEU J 488 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N GLY J 493 " --> pdb=" O PHE J 489 " (cutoff:3.500A) Processing helix chain 'J' and resid 494 through 507 removed outlier: 3.655A pdb=" N LEU J 499 " --> pdb=" O ILE J 495 " (cutoff:3.500A) removed outlier: 3.888A pdb=" N CYS J 501 " --> pdb=" O LEU J 497 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N VAL J 507 " --> pdb=" O ASP J 503 " (cutoff:3.500A) Processing helix chain 'J' and resid 519 through 542 removed outlier: 3.847A pdb=" N GLY J 523 " --> pdb=" O GLY J 519 " (cutoff:3.500A) removed outlier: 4.470A pdb=" N GLU J 524 " --> pdb=" O ARG J 520 " (cutoff:3.500A) removed outlier: 6.151A pdb=" N SER J 525 " --> pdb=" O GLU J 521 " (cutoff:3.500A) removed outlier: 5.999A pdb=" N TRP J 526 " --> pdb=" O ALA J 522 " (cutoff:3.500A) removed outlier: 5.936A pdb=" N LYS J 527 " --> pdb=" O GLY J 523 " (cutoff:3.500A) removed outlier: 5.837A pdb=" N SER J 528 " --> pdb=" O GLU J 524 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N ILE J 541 " --> pdb=" O LEU J 537 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N ARG J 542 " --> pdb=" O ALA J 538 " (cutoff:3.500A) Processing helix chain 'J' and resid 544 through 552 removed outlier: 4.165A pdb=" N SER J 552 " --> pdb=" O CYS J 548 " (cutoff:3.500A) Processing helix chain 'J' and resid 554 through 563 removed outlier: 3.554A pdb=" N LEU J 558 " --> pdb=" O SER J 554 " (cutoff:3.500A) removed outlier: 4.978A pdb=" N GLU J 563 " --> pdb=" O ILE J 559 " (cutoff:3.500A) Processing helix chain 'J' and resid 564 through 582 removed outlier: 6.129A pdb=" N SER J 568 " --> pdb=" O ARG J 564 " (cutoff:3.500A) removed outlier: 6.872A pdb=" N SER J 569 " --> pdb=" O LEU J 565 " (cutoff:3.500A) removed outlier: 6.062A pdb=" N GLY J 570 " --> pdb=" O GLU J 566 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N ILE J 571 " --> pdb=" O ALA J 567 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N GLU J 573 " --> pdb=" O SER J 569 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N VAL J 580 " --> pdb=" O HIS J 576 " (cutoff:3.500A) removed outlier: 5.591A pdb=" N GLU J 581 " --> pdb=" O CYS J 577 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N SER J 582 " --> pdb=" O VAL J 578 " (cutoff:3.500A) Processing helix chain 'J' and resid 583 through 589 removed outlier: 3.811A pdb=" N ASN J 587 " --> pdb=" O PRO J 583 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N ILE J 588 " --> pdb=" O GLU J 584 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N ILE J 589 " --> pdb=" O ALA J 585 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 583 through 589' Processing helix chain 'J' and resid 590 through 605 removed outlier: 3.503A pdb=" N LYS J 595 " --> pdb=" O GLU J 591 " (cutoff:3.500A) removed outlier: 3.557A pdb=" N SER J 596 " --> pdb=" O GLY J 592 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ILE J 597 " --> pdb=" O HIS J 593 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N LEU J 601 " --> pdb=" O ILE J 597 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N LYS J 603 " --> pdb=" O SER J 599 " (cutoff:3.500A) Processing helix chain 'J' and resid 607 through 620 removed outlier: 4.076A pdb=" N LEU J 611 " --> pdb=" O ASN J 607 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N VAL J 613 " --> pdb=" O LYS J 609 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N CYS J 618 " --> pdb=" O LEU J 614 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N VAL J 619 " --> pdb=" O CYS J 615 " (cutoff:3.500A) removed outlier: 5.310A pdb=" N CYS J 620 " --> pdb=" O SER J 616 " (cutoff:3.500A) Processing helix chain 'J' and resid 625 through 636 removed outlier: 3.507A pdb=" N GLN J 629 " --> pdb=" O VAL J 625 " (cutoff:3.500A) removed outlier: 3.919A pdb=" N HIS J 630 " --> pdb=" O ARG J 626 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N LEU J 631 " --> pdb=" O SER J 627 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N CYS J 633 " --> pdb=" O GLN J 629 " (cutoff:3.500A) Processing helix chain 'J' and resid 821 through 828 removed outlier: 4.598A pdb=" N ALA J 825 " --> pdb=" O PRO J 821 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N VAL J 826 " --> pdb=" O CYS J 822 " (cutoff:3.500A) removed outlier: 4.358A pdb=" N LEU J 827 " --> pdb=" O TYR J 823 " (cutoff:3.500A) Proline residue: J 828 - end of helix No H-bonds generated for 'chain 'J' and resid 821 through 828' Processing helix chain 'J' and resid 875 through 901 removed outlier: 4.112A pdb=" N ARG J 880 " --> pdb=" O PRO J 876 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ASN J 888 " --> pdb=" O LYS J 884 " (cutoff:3.500A) removed outlier: 4.408A pdb=" N GLU J 891 " --> pdb=" O GLU J 887 " (cutoff:3.500A) removed outlier: 5.116A pdb=" N LEU J 892 " --> pdb=" O ASN J 888 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N TRP J 893 " --> pdb=" O ILE J 889 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N LYS J 897 " --> pdb=" O TRP J 893 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N GLU J 899 " --> pdb=" O MET J 895 " (cutoff:3.500A) removed outlier: 4.717A pdb=" N LEU J 900 " --> pdb=" O ASN J 896 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N GLY J 901 " --> pdb=" O LYS J 897 " (cutoff:3.500A) Processing helix chain 'J' and resid 929 through 946 removed outlier: 4.819A pdb=" N MET J 935 " --> pdb=" O TYR J 931 " (cutoff:3.500A) removed outlier: 5.005A pdb=" N SER J 936 " --> pdb=" O ASN J 932 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU J 937 " --> pdb=" O LEU J 933 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLU J 938 " --> pdb=" O GLN J 934 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N THR J 939 " --> pdb=" O MET J 935 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N LEU J 940 " --> pdb=" O SER J 936 " (cutoff:3.500A) removed outlier: 3.740A pdb=" N THR J 942 " --> pdb=" O GLU J 938 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N LEU J 943 " --> pdb=" O THR J 939 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N LEU J 944 " --> pdb=" O LEU J 940 " (cutoff:3.500A) Processing helix chain 'J' and resid 989 through 1012 removed outlier: 3.624A pdb=" N ALA J 994 " --> pdb=" O PRO J 990 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N MET J 995 " --> pdb=" O SER J 991 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N VAL J 996 " --> pdb=" O GLN J 992 " (cutoff:3.500A) removed outlier: 4.755A pdb=" N ASP J 997 " --> pdb=" O GLU J 993 " (cutoff:3.500A) removed outlier: 4.284A pdb=" N LYS J 998 " --> pdb=" O ALA J 994 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N GLU J1001 " --> pdb=" O ASP J 997 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N HIS J1004 " --> pdb=" O ALA J1000 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N ASP J1010 " --> pdb=" O VAL J1006 " (cutoff:3.500A) Processing helix chain 'J' and resid 1042 through 1061 removed outlier: 4.516A pdb=" N ASN J1046 " --> pdb=" O THR J1042 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N LEU J1050 " --> pdb=" O ASN J1046 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N VAL J1054 " --> pdb=" O LEU J1050 " (cutoff:3.500A) removed outlier: 4.578A pdb=" N ARG J1055 " --> pdb=" O ARG J1051 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N THR J1056 " --> pdb=" O GLU J1052 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N LEU J1057 " --> pdb=" O ALA J1053 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N GLY J1059 " --> pdb=" O ARG J1055 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N TYR J1060 " --> pdb=" O THR J1056 " (cutoff:3.500A) Processing helix chain 'J' and resid 1220 through 1225 removed outlier: 5.699A pdb=" N LYS J1225 " --> pdb=" O VAL J1221 " (cutoff:3.500A) Processing helix chain 'J' and resid 1572 through 1577 removed outlier: 4.630A pdb=" N LYS J1576 " --> pdb=" O LYS J1572 " (cutoff:3.500A) removed outlier: 5.411A pdb=" N ASN J1577 " --> pdb=" O SER J1573 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1572 through 1577' Processing helix chain 'J' and resid 1640 through 1648 removed outlier: 4.232A pdb=" N LEU J1644 " --> pdb=" O ASP J1640 " (cutoff:3.500A) removed outlier: 4.735A pdb=" N THR J1645 " --> pdb=" O ILE J1641 " (cutoff:3.500A) removed outlier: 5.427A pdb=" N GLU J1646 " --> pdb=" O LEU J1642 " (cutoff:3.500A) removed outlier: 4.529A pdb=" N GLN J1647 " --> pdb=" O GLU J1643 " (cutoff:3.500A) removed outlier: 5.136A pdb=" N GLU J1648 " --> pdb=" O LEU J1644 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1640 through 1648' Processing helix chain 'J' and resid 1649 through 1666 removed outlier: 3.864A pdb=" N HIS J1654 " --> pdb=" O LEU J1650 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N LEU J1660 " --> pdb=" O HIS J1656 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N SER J1662 " --> pdb=" O LEU J1658 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N CYS J1665 " --> pdb=" O TYR J1661 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N ALA J1666 " --> pdb=" O SER J1662 " (cutoff:3.500A) Processing helix chain 'J' and resid 1669 through 1680 removed outlier: 3.631A pdb=" N HIS J1674 " --> pdb=" O HIS J1670 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N CYS J1677 " --> pdb=" O ALA J1673 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N SER J1678 " --> pdb=" O HIS J1674 " (cutoff:3.500A) removed outlier: 4.112A pdb=" N HIS J1679 " --> pdb=" O ALA J1675 " (cutoff:3.500A) Processing helix chain 'J' and resid 1681 through 1691 removed outlier: 4.276A pdb=" N LEU J1685 " --> pdb=" O ASP J1681 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N TYR J1687 " --> pdb=" O PRO J1683 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N GLU J1690 " --> pdb=" O LEU J1686 " (cutoff:3.500A) Processing helix chain 'J' and resid 1695 through 1710 removed outlier: 3.930A pdb=" N ALA J1700 " --> pdb=" O GLY J1696 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ASP J1708 " --> pdb=" O ASP J1704 " (cutoff:3.500A) Processing helix chain 'J' and resid 1711 through 1723 removed outlier: 4.663A pdb=" N THR J1716 " --> pdb=" O SER J1712 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N ALA J1717 " --> pdb=" O SER J1713 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N LEU J1719 " --> pdb=" O ALA J1715 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N MET J1721 " --> pdb=" O ALA J1717 " (cutoff:3.500A) removed outlier: 4.649A pdb=" N ASN J1722 " --> pdb=" O ARG J1718 " (cutoff:3.500A) removed outlier: 5.815A pdb=" N ASN J1723 " --> pdb=" O LEU J1719 " (cutoff:3.500A) Processing helix chain 'J' and resid 1730 through 1736 removed outlier: 3.944A pdb=" N LYS J1734 " --> pdb=" O THR J1730 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N SER J1735 " --> pdb=" O GLU J1731 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N ILE J1736 " --> pdb=" O GLU J1732 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 1730 through 1736' Processing helix chain 'J' and resid 1771 through 1777 removed outlier: 4.806A pdb=" N GLN J1777 " --> pdb=" O ASN J1773 " (cutoff:3.500A) Processing helix chain 'J' and resid 1783 through 1804 removed outlier: 3.502A pdb=" N LEU J1787 " --> pdb=" O PRO J1783 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ALA J1789 " --> pdb=" O ASP J1785 " (cutoff:3.500A) removed outlier: 4.518A pdb=" N ILE J1792 " --> pdb=" O LYS J1788 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N GLN J1793 " --> pdb=" O ALA J1789 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N GLU J1801 " --> pdb=" O GLU J1797 " (cutoff:3.500A) removed outlier: 5.911A pdb=" N LEU J1804 " --> pdb=" O GLN J1800 " (cutoff:3.500A) Processing helix chain 'J' and resid 1813 through 1832 removed outlier: 4.191A pdb=" N LEU J1817 " --> pdb=" O THR J1813 " (cutoff:3.500A) Proline residue: J1820 - end of helix removed outlier: 4.037A pdb=" N LEU J1824 " --> pdb=" O PRO J1820 " (cutoff:3.500A) removed outlier: 4.629A pdb=" N MET J1831 " --> pdb=" O THR J1827 " (cutoff:3.500A) removed outlier: 4.845A pdb=" N GLY J1832 " --> pdb=" O LEU J1828 " (cutoff:3.500A) Processing helix chain 'J' and resid 1835 through 1847 removed outlier: 3.863A pdb=" N HIS J1841 " --> pdb=" O GLU J1837 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N GLN J1844 " --> pdb=" O LYS J1840 " (cutoff:3.500A) removed outlier: 4.930A pdb=" N LEU J1845 " --> pdb=" O HIS J1841 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N ILE J1846 " --> pdb=" O ILE J1842 " (cutoff:3.500A) Processing helix chain 'J' and resid 1901 through 1952 removed outlier: 4.452A pdb=" N GLN J1906 " --> pdb=" O PRO J1902 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N LEU J1909 " --> pdb=" O LEU J1905 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N TYR J1913 " --> pdb=" O LEU J1909 " (cutoff:3.500A) removed outlier: 4.009A pdb=" N ASP J1916 " --> pdb=" O GLN J1912 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N GLN J1918 " --> pdb=" O LEU J1914 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N ARG J1920 " --> pdb=" O ASP J1916 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N ALA J1928 " --> pdb=" O GLU J1924 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N ASP J1931 " --> pdb=" O VAL J1927 " (cutoff:3.500A) removed outlier: 5.150A pdb=" N ASP J1932 " --> pdb=" O ALA J1928 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N PHE J1933 " --> pdb=" O PHE J1929 " (cutoff:3.500A) removed outlier: 4.389A pdb=" N VAL J1934 " --> pdb=" O SER J1930 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N LEU J1937 " --> pdb=" O PHE J1933 " (cutoff:3.500A) removed outlier: 4.089A pdb=" N ASP J1939 " --> pdb=" O ALA J1935 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N ASN J1940 " --> pdb=" O LYS J1936 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N GLN J1941 " --> pdb=" O LEU J1937 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N ARG J1942 " --> pdb=" O GLN J1938 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N ARG J1944 " --> pdb=" O ASN J1940 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N VAL J1948 " --> pdb=" O ARG J1944 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N MET J1949 " --> pdb=" O TYR J1945 " (cutoff:3.500A) Processing helix chain 'J' and resid 1990 through 1997 removed outlier: 5.327A pdb=" N ARG J1994 " --> pdb=" O PRO J1990 " (cutoff:3.500A) removed outlier: 5.586A pdb=" N GLN J1996 " --> pdb=" O GLU J1992 " (cutoff:3.500A) Processing helix chain 'J' and resid 1999 through 2011 removed outlier: 4.082A pdb=" N ILE J2010 " --> pdb=" O THR J2006 " (cutoff:3.500A) removed outlier: 5.095A pdb=" N GLU J2011 " --> pdb=" O HIS J2007 " (cutoff:3.500A) Processing helix chain 'J' and resid 2024 through 2038 removed outlier: 4.692A pdb=" N GLY J2028 " --> pdb=" O LEU J2024 " (cutoff:3.500A) removed outlier: 4.640A pdb=" N ARG J2029 " --> pdb=" O THR J2025 " (cutoff:3.500A) removed outlier: 4.186A pdb=" N LEU J2030 " --> pdb=" O ILE J2026 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N LEU J2031 " --> pdb=" O ARG J2027 " (cutoff:3.500A) removed outlier: 5.180A pdb=" N SER J2032 " --> pdb=" O GLY J2028 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N THR J2038 " --> pdb=" O VAL J2034 " (cutoff:3.500A) Processing helix chain 'J' and resid 2058 through 2074 removed outlier: 3.971A pdb=" N LEU J2062 " --> pdb=" O THR J2058 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N SER J2064 " --> pdb=" O GLN J2060 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N VAL J2068 " --> pdb=" O SER J2064 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N ALA J2071 " --> pdb=" O MET J2067 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N SER J2074 " --> pdb=" O TRP J2070 " (cutoff:3.500A) Processing helix chain 'J' and resid 2078 through 2095 removed outlier: 3.790A pdb=" N VAL J2082 " --> pdb=" O ASP J2078 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N ARG J2083 " --> pdb=" O PRO J2079 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N LEU J2088 " --> pdb=" O ALA J2084 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N GLN J2092 " --> pdb=" O LEU J2088 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N TYR J2093 " --> pdb=" O LEU J2089 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N GLY J2095 " --> pdb=" O ARG J2091 " (cutoff:3.500A) Processing helix chain 'J' and resid 2096 through 2106 removed outlier: 3.537A pdb=" N ALA J2102 " --> pdb=" O GLY J2098 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N LEU J2103 " --> pdb=" O LEU J2099 " (cutoff:3.500A) Proline residue: J2104 - end of helix Processing helix chain 'J' and resid 2110 through 2132 removed outlier: 3.655A pdb=" N VAL J2114 " --> pdb=" O ASN J2110 " (cutoff:3.500A) removed outlier: 4.753A pdb=" N GLU J2115 " --> pdb=" O GLY J2111 " (cutoff:3.500A) removed outlier: 5.187A pdb=" N ASP J2116 " --> pdb=" O VAL J2112 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N ILE J2118 " --> pdb=" O VAL J2114 " (cutoff:3.500A) removed outlier: 4.856A pdb=" N ASN J2119 " --> pdb=" O GLU J2115 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N GLN J2126 " --> pdb=" O ALA J2122 " (cutoff:3.500A) removed outlier: 3.899A pdb=" N ILE J2127 " --> pdb=" O SER J2123 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N LEU J2131 " --> pdb=" O ILE J2127 " (cutoff:3.500A) removed outlier: 5.004A pdb=" N SER J2132 " --> pdb=" O ARG J2128 " (cutoff:3.500A) Processing helix chain 'J' and resid 2140 through 2153 removed outlier: 3.856A pdb=" N ARG J2145 " --> pdb=" O LYS J2141 " (cutoff:3.500A) Processing helix chain 'J' and resid 2159 through 2167 removed outlier: 3.621A pdb=" N ARG J2164 " --> pdb=" O PRO J2160 " (cutoff:3.500A) removed outlier: 4.242A pdb=" N GLY J2167 " --> pdb=" O MET J2163 " (cutoff:3.500A) Processing helix chain 'J' and resid 2168 through 2181 removed outlier: 3.966A pdb=" N VAL J2172 " --> pdb=" O MET J2168 " (cutoff:3.500A) removed outlier: 3.887A pdb=" N MET J2173 " --> pdb=" O HIS J2169 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N ASN J2178 " --> pdb=" O GLU J2174 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N VAL J2179 " --> pdb=" O VAL J2175 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N GLY J2181 " --> pdb=" O VAL J2177 " (cutoff:3.500A) Processing helix chain 'J' and resid 2191 through 2209 removed outlier: 4.224A pdb=" N ALA J2195 " --> pdb=" O PRO J2191 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N ASN J2196 " --> pdb=" O LYS J2192 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N ARG J2199 " --> pdb=" O ALA J2195 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N PHE J2200 " --> pdb=" O ASN J2196 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N LEU J2201 " --> pdb=" O CYS J2197 " (cutoff:3.500A) removed outlier: 4.122A pdb=" N ARG J2206 " --> pdb=" O CYS J2202 " (cutoff:3.500A) removed outlier: 4.274A pdb=" N ILE J2207 " --> pdb=" O TYR J2203 " (cutoff:3.500A) removed outlier: 4.685A pdb=" N SER J2208 " --> pdb=" O PHE J2204 " (cutoff:3.500A) removed outlier: 5.282A pdb=" N ARG J2209 " --> pdb=" O CYS J2205 " (cutoff:3.500A) Processing helix chain 'J' and resid 2210 through 2220 removed outlier: 4.341A pdb=" N ASP J2217 " --> pdb=" O LYS J2213 " (cutoff:3.500A) removed outlier: 5.023A pdb=" N HIS J2218 " --> pdb=" O ALA J2214 " (cutoff:3.500A) removed outlier: 4.521A pdb=" N LEU J2219 " --> pdb=" O MET J2215 " (cutoff:3.500A) removed outlier: 4.966A pdb=" N SER J2220 " --> pdb=" O PHE J2216 " (cutoff:3.500A) Processing helix chain 'J' and resid 2221 through 2226 removed outlier: 4.250A pdb=" N ASN J2225 " --> pdb=" O TYR J2221 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N SER J2226 " --> pdb=" O LEU J2222 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 2221 through 2226' Processing helix chain 'J' and resid 2239 through 2249 removed outlier: 4.476A pdb=" N VAL J2243 " --> pdb=" O THR J2239 " (cutoff:3.500A) removed outlier: 4.999A pdb=" N ALA J2244 " --> pdb=" O PRO J2240 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N VAL J2248 " --> pdb=" O ALA J2244 " (cutoff:3.500A) Processing helix chain 'J' and resid 2251 through 2258 removed outlier: 4.060A pdb=" N ALA J2255 " --> pdb=" O ASN J2251 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N LEU J2258 " --> pdb=" O LEU J2254 " (cutoff:3.500A) Processing helix chain 'J' and resid 2259 through 2275 removed outlier: 3.864A pdb=" N LEU J2263 " --> pdb=" O ARG J2259 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N LYS J2265 " --> pdb=" O PRO J2261 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N VAL J2266 " --> pdb=" O ASP J2262 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N VAL J2267 " --> pdb=" O LEU J2263 " (cutoff:3.500A) removed outlier: 3.648A pdb=" N ALA J2271 " --> pdb=" O VAL J2267 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N GLY J2274 " --> pdb=" O LEU J2270 " (cutoff:3.500A) removed outlier: 5.819A pdb=" N LEU J2275 " --> pdb=" O ALA J2271 " (cutoff:3.500A) Processing helix chain 'J' and resid 2293 through 2308 removed outlier: 5.676A pdb=" N GLU J2297 " --> pdb=" O PRO J2293 " (cutoff:3.500A) removed outlier: 4.484A pdb=" N ARG J2298 " --> pdb=" O VAL J2294 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N TYR J2299 " --> pdb=" O GLU J2295 " (cutoff:3.500A) removed outlier: 3.766A pdb=" N ASP J2301 " --> pdb=" O GLU J2297 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N PHE J2302 " --> pdb=" O ARG J2298 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N LEU J2303 " --> pdb=" O TYR J2299 " (cutoff:3.500A) removed outlier: 4.296A pdb=" N PHE J2305 " --> pdb=" O ASP J2301 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N VAL J2307 " --> pdb=" O LEU J2303 " (cutoff:3.500A) Processing helix chain 'J' and resid 2314 through 2329 removed outlier: 4.516A pdb=" N VAL J2321 " --> pdb=" O ASN J2317 " (cutoff:3.500A) removed outlier: 4.597A pdb=" N VAL J2322 " --> pdb=" O ALA J2318 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N ARG J2323 " --> pdb=" O ASN J2319 " (cutoff:3.500A) removed outlier: 5.479A pdb=" N LEU J2324 " --> pdb=" O VAL J2320 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N ILE J2326 " --> pdb=" O VAL J2322 " (cutoff:3.500A) removed outlier: 5.140A pdb=" N ARG J2327 " --> pdb=" O ARG J2323 " (cutoff:3.500A) removed outlier: 3.774A pdb=" N ARG J2328 " --> pdb=" O LEU J2324 " (cutoff:3.500A) Proline residue: J2329 - end of helix Processing helix chain 'J' and resid 2343 through 2354 removed outlier: 3.863A pdb=" N ALA J2347 " --> pdb=" O GLY J2343 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N MET J2348 " --> pdb=" O LEU J2344 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N GLU J2349 " --> pdb=" O LEU J2345 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N GLU J2350 " --> pdb=" O ALA J2346 " (cutoff:3.500A) removed outlier: 4.843A pdb=" N ILE J2352 " --> pdb=" O MET J2348 " (cutoff:3.500A) removed outlier: 4.295A pdb=" N LYS J2353 " --> pdb=" O GLU J2349 " (cutoff:3.500A) Processing helix chain 'J' and resid 2387 through 2404 removed outlier: 4.168A pdb=" N THR J2391 " --> pdb=" O ASN J2387 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N TYR J2393 " --> pdb=" O ILE J2389 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ALA J2394 " --> pdb=" O MET J2390 " (cutoff:3.500A) removed outlier: 4.799A pdb=" N ASP J2398 " --> pdb=" O ALA J2394 " (cutoff:3.500A) removed outlier: 4.233A pdb=" N ALA J2404 " --> pdb=" O LEU J2400 " (cutoff:3.500A) Processing helix chain 'J' and resid 2408 through 2413 removed outlier: 4.023A pdb=" N ALA J2412 " --> pdb=" O HIS J2408 " (cutoff:3.500A) Processing helix chain 'J' and resid 2416 through 2427 removed outlier: 3.885A pdb=" N ILE J2420 " --> pdb=" O GLU J2416 " (cutoff:3.500A) removed outlier: 3.645A pdb=" N ARG J2421 " --> pdb=" O ALA J2417 " (cutoff:3.500A) removed outlier: 4.112A pdb=" N ARG J2425 " --> pdb=" O ARG J2421 " (cutoff:3.500A) Processing helix chain 'J' and resid 2432 through 2437 removed outlier: 4.447A pdb=" N ILE J2437 " --> pdb=" O LEU J2433 " (cutoff:3.500A) Processing helix chain 'J' and resid 2462 through 2476 removed outlier: 4.637A pdb=" N LYS J2466 " --> pdb=" O CYS J2462 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N LEU J2471 " --> pdb=" O ALA J2467 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N PHE J2472 " --> pdb=" O ALA J2468 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N VAL J2476 " --> pdb=" O PHE J2472 " (cutoff:3.500A) Processing helix chain 'J' and resid 2481 through 2489 removed outlier: 5.243A pdb=" N LEU J2485 " --> pdb=" O VAL J2481 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N LEU J2486 " --> pdb=" O GLN J2482 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N LEU J2488 " --> pdb=" O PHE J2484 " (cutoff:3.500A) removed outlier: 3.958A pdb=" N LEU J2489 " --> pdb=" O LEU J2485 " (cutoff:3.500A) Processing helix chain 'J' and resid 2492 through 2499 removed outlier: 3.943A pdb=" N ASP J2496 " --> pdb=" O GLY J2492 " (cutoff:3.500A) removed outlier: 4.539A pdb=" N LEU J2497 " --> pdb=" O PHE J2493 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N ARG J2498 " --> pdb=" O LEU J2494 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N ALA J2499 " --> pdb=" O PRO J2495 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 2492 through 2499' Processing helix chain 'J' and resid 2511 through 2529 removed outlier: 5.138A pdb=" N ALA J2516 " --> pdb=" O ASP J2512 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N LEU J2517 " --> pdb=" O MET J2513 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N ASN J2518 " --> pdb=" O ALA J2514 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N ARG J2519 " --> pdb=" O LEU J2515 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N LEU J2521 " --> pdb=" O LEU J2517 " (cutoff:3.500A) removed outlier: 5.252A pdb=" N CYS J2522 " --> pdb=" O ASN J2518 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N THR J2523 " --> pdb=" O ARG J2519 " (cutoff:3.500A) removed outlier: 5.292A pdb=" N VAL J2525 " --> pdb=" O LEU J2521 " (cutoff:3.500A) Proline residue: J2527 - end of helix Processing helix chain 'J' and resid 2538 through 2552 removed outlier: 4.070A pdb=" N HIS J2542 " --> pdb=" O GLY J2538 " (cutoff:3.500A) removed outlier: 4.693A pdb=" N ILE J2546 " --> pdb=" O HIS J2542 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N ASP J2547 " --> pdb=" O ALA J2543 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N LEU J2549 " --> pdb=" O LEU J2545 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N LEU J2550 " --> pdb=" O ILE J2546 " (cutoff:3.500A) removed outlier: 4.090A pdb=" N THR J2552 " --> pdb=" O SER J2548 " (cutoff:3.500A) Processing helix chain 'J' and resid 2561 through 2576 removed outlier: 4.238A pdb=" N ALA J2565 " --> pdb=" O SER J2561 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N GLN J2566 " --> pdb=" O LEU J2562 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ARG J2567 " --> pdb=" O THR J2563 " (cutoff:3.500A) removed outlier: 4.006A pdb=" N GLU J2571 " --> pdb=" O ARG J2567 " (cutoff:3.500A) removed outlier: 4.380A pdb=" N VAL J2572 " --> pdb=" O ASP J2568 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N LEU J2574 " --> pdb=" O ILE J2570 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N LEU J2575 " --> pdb=" O GLU J2571 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N SER J2576 " --> pdb=" O VAL J2572 " (cutoff:3.500A) Processing helix chain 'J' and resid 2584 through 2601 removed outlier: 3.950A pdb=" N HIS J2588 " --> pdb=" O SER J2584 " (cutoff:3.500A) removed outlier: 4.973A pdb=" N ARG J2591 " --> pdb=" O GLN J2587 " (cutoff:3.500A) removed outlier: 4.733A pdb=" N ARG J2592 " --> pdb=" O HIS J2588 " (cutoff:3.500A) removed outlier: 5.299A pdb=" N LEU J2593 " --> pdb=" O LEU J2589 " (cutoff:3.500A) removed outlier: 6.367A pdb=" N VAL J2594 " --> pdb=" O LEU J2590 " (cutoff:3.500A) removed outlier: 4.635A pdb=" N PHE J2595 " --> pdb=" O ARG J2591 " (cutoff:3.500A) removed outlier: 5.153A pdb=" N ASP J2596 " --> pdb=" O ARG J2592 " (cutoff:3.500A) Proline residue: J2598 - end of helix removed outlier: 5.244A pdb=" N ASN J2601 " --> pdb=" O VAL J2597 " (cutoff:3.500A) Processing helix chain 'J' and resid 2605 through 2627 removed outlier: 4.663A pdb=" N THR J2612 " --> pdb=" O LEU J2608 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N HIS J2614 " --> pdb=" O LEU J2610 " (cutoff:3.500A) removed outlier: 5.009A pdb=" N TYR J2615 " --> pdb=" O LEU J2611 " (cutoff:3.500A) removed outlier: 4.699A pdb=" N ARG J2617 " --> pdb=" O ASN J2613 " (cutoff:3.500A) removed outlier: 4.921A pdb=" N CYS J2618 " --> pdb=" O HIS J2614 " (cutoff:3.500A) removed outlier: 4.155A pdb=" N LYS J2620 " --> pdb=" O GLU J2616 " (cutoff:3.500A) removed outlier: 4.784A pdb=" N TYR J2621 " --> pdb=" O ARG J2617 " (cutoff:3.500A) removed outlier: 4.489A pdb=" N TYR J2622 " --> pdb=" O CYS J2618 " (cutoff:3.500A) removed outlier: 4.522A pdb=" N CYS J2623 " --> pdb=" O TRP J2619 " (cutoff:3.500A) Proline residue: J2625 - end of helix Processing helix chain 'J' and resid 2635 through 2653 removed outlier: 3.606A pdb=" N LEU J2639 " --> pdb=" O SER J2635 " (cutoff:3.500A) removed outlier: 4.582A pdb=" N HIS J2640 " --> pdb=" O GLU J2636 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N LEU J2641 " --> pdb=" O GLU J2637 " (cutoff:3.500A) removed outlier: 4.550A pdb=" N SER J2642 " --> pdb=" O GLU J2638 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ARG J2643 " --> pdb=" O LEU J2639 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N LEU J2645 " --> pdb=" O LEU J2641 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N PHE J2646 " --> pdb=" O SER J2642 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N TRP J2647 " --> pdb=" O ARG J2643 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N GLY J2648 " --> pdb=" O LYS J2644 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N ASP J2651 " --> pdb=" O TRP J2647 " (cutoff:3.500A) removed outlier: 4.243A pdb=" N ALA J2652 " --> pdb=" O GLY J2648 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N LEU J2653 " --> pdb=" O ILE J2649 " (cutoff:3.500A) Processing helix chain 'J' and resid 2660 through 2678 removed outlier: 4.807A pdb=" N LEU J2665 " --> pdb=" O GLU J2661 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N ALA J2666 " --> pdb=" O LEU J2662 " (cutoff:3.500A) Proline residue: J2668 - end of helix removed outlier: 3.595A pdb=" N SER J2671 " --> pdb=" O LEU J2667 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N LEU J2677 " --> pdb=" O VAL J2673 " (cutoff:3.500A) Proline residue: J2678 - end of helix Processing helix chain 'J' and resid 2716 through 2738 removed outlier: 4.232A pdb=" N TYR J2720 " --> pdb=" O GLU J2716 " (cutoff:3.500A) removed outlier: 4.113A pdb=" N PHE J2721 " --> pdb=" O LYS J2717 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N ASN J2723 " --> pdb=" O GLU J2719 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N LYS J2724 " --> pdb=" O TYR J2720 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ALA J2726 " --> pdb=" O ILE J2722 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N HIS J2730 " --> pdb=" O ALA J2726 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ASP J2731 " --> pdb=" O GLU J2727 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N ASP J2736 " --> pdb=" O LYS J2732 " (cutoff:3.500A) removed outlier: 4.585A pdb=" N LYS J2737 " --> pdb=" O TRP J2733 " (cutoff:3.500A) Processing helix chain 'J' and resid 2769 through 2786 Proline residue: J2775 - end of helix removed outlier: 3.589A pdb=" N SER J2779 " --> pdb=" O PRO J2775 " (cutoff:3.500A) removed outlier: 5.015A pdb=" N THR J2782 " --> pdb=" O GLU J2778 " (cutoff:3.500A) removed outlier: 5.180A pdb=" N MET J2783 " --> pdb=" O SER J2779 " (cutoff:3.500A) removed outlier: 4.468A pdb=" N LEU J2784 " --> pdb=" O LEU J2780 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N ALA J2785 " --> pdb=" O LYS J2781 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N TRP J2786 " --> pdb=" O THR J2782 " (cutoff:3.500A) Processing helix chain 'J' and resid 2836 through 2862 removed outlier: 4.735A pdb=" N ALA J2840 " --> pdb=" O ARG J2836 " (cutoff:3.500A) removed outlier: 4.165A pdb=" N MET J2841 " --> pdb=" O ASP J2837 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N MET J2844 " --> pdb=" O ALA J2840 " (cutoff:3.500A) removed outlier: 4.524A pdb=" N ALA J2854 " --> pdb=" O HIS J2850 " (cutoff:3.500A) removed outlier: 4.634A pdb=" N LYS J2855 " --> pdb=" O ASN J2851 " (cutoff:3.500A) removed outlier: 4.857A pdb=" N LYS J2858 " --> pdb=" O ALA J2854 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N LEU J2859 " --> pdb=" O LYS J2855 " (cutoff:3.500A) removed outlier: 4.226A pdb=" N GLU J2860 " --> pdb=" O LYS J2856 " (cutoff:3.500A) removed outlier: 4.756A pdb=" N LEU J2861 " --> pdb=" O LYS J2857 " (cutoff:3.500A) removed outlier: 5.056A pdb=" N GLU J2862 " --> pdb=" O LYS J2858 " (cutoff:3.500A) Processing helix chain 'J' and resid 2881 through 2901 removed outlier: 4.683A pdb=" N LYS J2885 " --> pdb=" O LYS J2881 " (cutoff:3.500A) removed outlier: 4.150A pdb=" N ASP J2886 " --> pdb=" O GLU J2882 " (cutoff:3.500A) removed outlier: 3.607A pdb=" N GLU J2888 " --> pdb=" O ALA J2884 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N LYS J2889 " --> pdb=" O LYS J2885 " (cutoff:3.500A) removed outlier: 3.929A pdb=" N ALA J2890 " --> pdb=" O ASP J2886 " (cutoff:3.500A) removed outlier: 4.385A pdb=" N GLN J2891 " --> pdb=" O ARG J2887 " (cutoff:3.500A) removed outlier: 4.393A pdb=" N ASP J2892 " --> pdb=" O GLU J2888 " (cutoff:3.500A) removed outlier: 4.261A pdb=" N ILE J2893 " --> pdb=" O LYS J2889 " (cutoff:3.500A) removed outlier: 5.103A pdb=" N LEU J2894 " --> pdb=" O ALA J2890 " (cutoff:3.500A) removed outlier: 4.114A pdb=" N LEU J2897 " --> pdb=" O ILE J2893 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N GLN J2898 " --> pdb=" O LEU J2894 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N ILE J2899 " --> pdb=" O LYS J2895 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N ASN J2900 " --> pdb=" O PHE J2896 " (cutoff:3.500A) Processing helix chain 'J' and resid 2982 through 3004 removed outlier: 3.972A pdb=" N ARG J2989 " --> pdb=" O SER J2985 " (cutoff:3.500A) Proline residue: J2990 - end of helix removed outlier: 3.536A pdb=" N SER J2998 " --> pdb=" O GLY J2994 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N GLU J3001 " --> pdb=" O ALA J2997 " (cutoff:3.500A) removed outlier: 4.755A pdb=" N LYS J3002 " --> pdb=" O SER J2998 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N GLU J3003 " --> pdb=" O ASN J2999 " (cutoff:3.500A) removed outlier: 5.078A pdb=" N MET J3004 " --> pdb=" O LYS J3000 " (cutoff:3.500A) Processing helix chain 'J' and resid 3009 through 3028 removed outlier: 3.894A pdb=" N GLY J3013 " --> pdb=" O PHE J3009 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N LEU J3015 " --> pdb=" O LYS J3011 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N HIS J3018 " --> pdb=" O VAL J3014 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ARG J3019 " --> pdb=" O LEU J3015 " (cutoff:3.500A) removed outlier: 4.655A pdb=" N ILE J3020 " --> pdb=" O VAL J3016 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N SER J3021 " --> pdb=" O ARG J3017 " (cutoff:3.500A) removed outlier: 4.444A pdb=" N LEU J3022 " --> pdb=" O HIS J3018 " (cutoff:3.500A) removed outlier: 5.499A pdb=" N PHE J3023 " --> pdb=" O ARG J3019 " (cutoff:3.500A) removed outlier: 4.273A pdb=" N GLY J3024 " --> pdb=" O ILE J3020 " (cutoff:3.500A) Processing helix chain 'J' and resid 3035 through 3052 removed outlier: 4.496A pdb=" N GLN J3039 " --> pdb=" O HIS J3035 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N ASP J3042 " --> pdb=" O GLY J3038 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N ARG J3044 " --> pdb=" O THR J3040 " (cutoff:3.500A) removed outlier: 4.697A pdb=" N THR J3045 " --> pdb=" O LEU J3041 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N VAL J3046 " --> pdb=" O ASP J3042 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N MET J3047 " --> pdb=" O ALA J3043 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N THR J3049 " --> pdb=" O THR J3045 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N GLU J3052 " --> pdb=" O LYS J3048 " (cutoff:3.500A) Processing helix chain 'J' and resid 3062 through 3082 removed outlier: 4.743A pdb=" N ALA J3066 " --> pdb=" O LEU J3062 " (cutoff:3.500A) removed outlier: 5.788A pdb=" N ASP J3068 " --> pdb=" O ASN J3064 " (cutoff:3.500A) removed outlier: 7.554A pdb=" N LEU J3069 " --> pdb=" O ALA J3065 " (cutoff:3.500A) removed outlier: 5.715A pdb=" N GLU J3070 " --> pdb=" O ALA J3066 " (cutoff:3.500A) removed outlier: 3.861A pdb=" N THR J3072 " --> pdb=" O ASP J3068 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N MET J3073 " --> pdb=" O LEU J3069 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N GLU J3074 " --> pdb=" O GLU J3070 " (cutoff:3.500A) removed outlier: 3.681A pdb=" N ASN J3075 " --> pdb=" O LYS J3071 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N LYS J3077 " --> pdb=" O MET J3073 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N PHE J3081 " --> pdb=" O LYS J3077 " (cutoff:3.500A) removed outlier: 4.904A pdb=" N THR J3082 " --> pdb=" O GLN J3078 " (cutoff:3.500A) Processing helix chain 'J' and resid 3102 through 3114 removed outlier: 5.216A pdb=" N LEU J3106 " --> pdb=" O LEU J3102 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N SER J3107 " --> pdb=" O LEU J3103 " (cutoff:3.500A) removed outlier: 4.394A pdb=" N SER J3108 " --> pdb=" O PRO J3104 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N LEU J3109 " --> pdb=" O MET J3105 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N PHE J3110 " --> pdb=" O LEU J3106 " (cutoff:3.500A) Processing helix chain 'J' and resid 3124 through 3142 removed outlier: 3.850A pdb=" N GLN J3128 " --> pdb=" O LEU J3124 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N SER J3130 " --> pdb=" O ASP J3126 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N ARG J3133 " --> pdb=" O VAL J3129 " (cutoff:3.500A) removed outlier: 4.616A pdb=" N LEU J3138 " --> pdb=" O ILE J3134 " (cutoff:3.500A) removed outlier: 4.990A pdb=" N TYR J3139 " --> pdb=" O LEU J3135 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N ALA J3140 " --> pdb=" O THR J3136 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N LEU J3141 " --> pdb=" O SER J3137 " (cutoff:3.500A) Processing helix chain 'J' and resid 3150 through 3166 removed outlier: 4.649A pdb=" N SER J3154 " --> pdb=" O GLU J3150 " (cutoff:3.500A) removed outlier: 4.584A pdb=" N ALA J3155 " --> pdb=" O ARG J3151 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N LEU J3156 " --> pdb=" O GLN J3152 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N GLU J3158 " --> pdb=" O SER J3154 " (cutoff:3.500A) removed outlier: 6.419A pdb=" N GLY J3165 " --> pdb=" O ALA J3161 " (cutoff:3.500A) removed outlier: 4.575A pdb=" N ALA J3166 " --> pdb=" O ALA J3162 " (cutoff:3.500A) Processing helix chain 'J' and resid 3170 through 3182 removed outlier: 3.990A pdb=" N THR J3174 " --> pdb=" O ALA J3170 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N LEU J3176 " --> pdb=" O LEU J3172 " (cutoff:3.500A) removed outlier: 4.682A pdb=" N ASP J3177 " --> pdb=" O GLU J3173 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N LYS J3178 " --> pdb=" O THR J3174 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ASN J3180 " --> pdb=" O LEU J3176 " (cutoff:3.500A) removed outlier: 5.043A pdb=" N ILE J3181 " --> pdb=" O ASP J3177 " (cutoff:3.500A) removed outlier: 4.663A pdb=" N TYR J3182 " --> pdb=" O LYS J3178 " (cutoff:3.500A) Processing helix chain 'J' and resid 3591 through 3606 removed outlier: 3.802A pdb=" N GLN J3595 " --> pdb=" O LEU J3591 " (cutoff:3.500A) removed outlier: 4.438A pdb=" N ARG J3596 " --> pdb=" O LEU J3592 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N LYS J3597 " --> pdb=" O SER J3593 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N ALA J3599 " --> pdb=" O GLN J3595 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N ALA J3602 " --> pdb=" O ARG J3598 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N ARG J3605 " --> pdb=" O VAL J3601 " (cutoff:3.500A) Processing helix chain 'J' and resid 3613 through 3632 removed outlier: 3.949A pdb=" N ALA J3617 " --> pdb=" O PRO J3613 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N LYS J3627 " --> pdb=" O GLN J3623 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N ILE J3630 " --> pdb=" O GLU J3626 " (cutoff:3.500A) removed outlier: 5.579A pdb=" N GLU J3631 " --> pdb=" O LYS J3627 " (cutoff:3.500A) removed outlier: 5.521A pdb=" N THR J3632 " --> pdb=" O SER J3628 " (cutoff:3.500A) Processing helix chain 'J' and resid 3637 through 3647 removed outlier: 4.188A pdb=" N ILE J3642 " --> pdb=" O GLU J3638 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N ALA J3646 " --> pdb=" O ILE J3642 " (cutoff:3.500A) removed outlier: 4.535A pdb=" N LYS J3647 " --> pdb=" O GLU J3643 " (cutoff:3.500A) Processing helix chain 'J' and resid 3663 through 3678 removed outlier: 3.701A pdb=" N LEU J3668 " --> pdb=" O PRO J3664 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N THR J3678 " --> pdb=" O ARG J3674 " (cutoff:3.500A) Processing helix chain 'J' and resid 3686 through 3700 removed outlier: 3.621A pdb=" N MET J3690 " --> pdb=" O ASP J3686 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N ALA J3691 " --> pdb=" O PHE J3687 " (cutoff:3.500A) removed outlier: 5.277A pdb=" N ASP J3694 " --> pdb=" O MET J3690 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ILE J3695 " --> pdb=" O ALA J3691 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N MET J3696 " --> pdb=" O TYR J3692 " (cutoff:3.500A) removed outlier: 4.941A pdb=" N ALA J3697 " --> pdb=" O ALA J3693 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N SER J3699 " --> pdb=" O ILE J3695 " (cutoff:3.500A) removed outlier: 5.591A pdb=" N CYS J3700 " --> pdb=" O MET J3696 " (cutoff:3.500A) Processing helix chain 'J' and resid 3714 through 3734 removed outlier: 4.858A pdb=" N LYS J3718 " --> pdb=" O SER J3714 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N LYS J3722 " --> pdb=" O LYS J3718 " (cutoff:3.500A) removed outlier: 4.195A pdb=" N LEU J3725 " --> pdb=" O GLU J3721 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N TYR J3727 " --> pdb=" O GLN J3723 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N ALA J3730 " --> pdb=" O LEU J3726 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N LEU J3732 " --> pdb=" O GLN J3728 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N ASP J3734 " --> pdb=" O ALA J3730 " (cutoff:3.500A) Processing helix chain 'J' and resid 3736 through 3749 removed outlier: 3.508A pdb=" N MET J3740 " --> pdb=" O GLY J3736 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N VAL J3741 " --> pdb=" O ALA J3737 " (cutoff:3.500A) removed outlier: 4.148A pdb=" N LEU J3742 " --> pdb=" O ALA J3738 " (cutoff:3.500A) removed outlier: 4.100A pdb=" N THR J3744 " --> pdb=" O MET J3740 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N ILE J3745 " --> pdb=" O VAL J3741 " (cutoff:3.500A) removed outlier: 4.213A pdb=" N SER J3746 " --> pdb=" O LEU J3742 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N SER J3748 " --> pdb=" O THR J3744 " (cutoff:3.500A) removed outlier: 4.842A pdb=" N LYS J3749 " --> pdb=" O ILE J3745 " (cutoff:3.500A) Processing helix chain 'J' and resid 3753 through 3768 removed outlier: 3.686A pdb=" N ALA J3758 " --> pdb=" O PRO J3754 " (cutoff:3.500A) removed outlier: 5.444A pdb=" N LYS J3761 " --> pdb=" O ALA J3757 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N LEU J3762 " --> pdb=" O ALA J3758 " (cutoff:3.500A) removed outlier: 4.098A pdb=" N GLY J3763 " --> pdb=" O THR J3759 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N ILE J3766 " --> pdb=" O LEU J3762 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N LEU J3767 " --> pdb=" O GLY J3763 " (cutoff:3.500A) Processing helix chain 'J' and resid 3771 through 3786 removed outlier: 3.754A pdb=" N GLN J3775 " --> pdb=" O ASN J3771 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N GLN J3776 " --> pdb=" O SER J3772 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N LEU J3779 " --> pdb=" O GLN J3775 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N LEU J3782 " --> pdb=" O MET J3778 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N LYS J3785 " --> pdb=" O TYR J3781 " (cutoff:3.500A) removed outlier: 5.011A pdb=" N LYS J3786 " --> pdb=" O LEU J3782 " (cutoff:3.500A) Processing helix chain 'J' and resid 3787 through 3801 removed outlier: 4.770A pdb=" N PHE J3791 " --> pdb=" O ASP J3787 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N SER J3800 " --> pdb=" O GLY J3796 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N CYS J3801 " --> pdb=" O LEU J3797 " (cutoff:3.500A) Processing helix chain 'J' and resid 3805 through 3819 removed outlier: 3.837A pdb=" N PHE J3809 " --> pdb=" O ASP J3805 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N ARG J3811 " --> pdb=" O ASN J3807 " (cutoff:3.500A) removed outlier: 3.533A pdb=" N GLU J3816 " --> pdb=" O GLN J3812 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N GLY J3817 " --> pdb=" O ASN J3813 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N LEU J3818 " --> pdb=" O LYS J3814 " (cutoff:3.500A) Processing helix chain 'J' and resid 3829 through 3849 removed outlier: 4.304A pdb=" N ASP J3833 " --> pdb=" O LYS J3829 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N ASP J3834 " --> pdb=" O VAL J3830 " (cutoff:3.500A) removed outlier: 6.992A pdb=" N GLU J3835 " --> pdb=" O LEU J3831 " (cutoff:3.500A) removed outlier: 6.652A pdb=" N PHE J3836 " --> pdb=" O GLN J3832 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N THR J3837 " --> pdb=" O ASP J3833 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N ASP J3839 " --> pdb=" O GLU J3835 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N PHE J3841 " --> pdb=" O THR J3837 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N LEU J3847 " --> pdb=" O PHE J3843 " (cutoff:3.500A) removed outlier: 4.191A pdb=" N CYS J3848 " --> pdb=" O LEU J3844 " (cutoff:3.500A) Processing helix chain 'J' and resid 3852 through 3861 removed outlier: 4.171A pdb=" N ASN J3857 " --> pdb=" O SER J3853 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N LEU J3859 " --> pdb=" O PHE J3855 " (cutoff:3.500A) removed outlier: 4.738A pdb=" N ARG J3860 " --> pdb=" O GLN J3856 " (cutoff:3.500A) Processing helix chain 'J' and resid 3870 through 3894 removed outlier: 3.806A pdb=" N LEU J3879 " --> pdb=" O THR J3875 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N ARG J3881 " --> pdb=" O ASP J3877 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N SER J3885 " --> pdb=" O ARG J3881 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N TYR J3890 " --> pdb=" O ILE J3886 " (cutoff:3.500A) Processing helix chain 'J' and resid 3900 through 3926 removed outlier: 3.928A pdb=" N ASN J3906 " --> pdb=" O GLN J3902 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N PHE J3907 " --> pdb=" O GLY J3903 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N LYS J3909 " --> pdb=" O ARG J3905 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N ALA J3910 " --> pdb=" O ASN J3906 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N VAL J3913 " --> pdb=" O LYS J3909 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N ALA J3914 " --> pdb=" O ALA J3910 " (cutoff:3.500A) removed outlier: 4.207A pdb=" N TYR J3924 " --> pdb=" O THR J3920 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N ILE J3925 " --> pdb=" O LEU J3921 " (cutoff:3.500A) Processing helix chain 'J' and resid 3929 through 3940 removed outlier: 3.588A pdb=" N GLN J3933 " --> pdb=" O CYS J3929 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N LEU J3936 " --> pdb=" O ASN J3932 " (cutoff:3.500A) removed outlier: 4.323A pdb=" N SER J3939 " --> pdb=" O SER J3935 " (cutoff:3.500A) removed outlier: 5.252A pdb=" N ARG J3940 " --> pdb=" O LEU J3936 " (cutoff:3.500A) Processing helix chain 'J' and resid 3941 through 3959 removed outlier: 3.562A pdb=" N HIS J3950 " --> pdb=" O VAL J3946 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N HIS J3954 " --> pdb=" O HIS J3950 " (cutoff:3.500A) removed outlier: 4.406A pdb=" N MET J3957 " --> pdb=" O ALA J3953 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N LYS J3958 " --> pdb=" O HIS J3954 " (cutoff:3.500A) Processing helix chain 'J' and resid 3964 through 3989 removed outlier: 4.602A pdb=" N LEU J3968 " --> pdb=" O SER J3964 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N LYS J3970 " --> pdb=" O ILE J3966 " (cutoff:3.500A) removed outlier: 4.254A pdb=" N GLU J3971 " --> pdb=" O GLU J3967 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N VAL J3980 " --> pdb=" O GLN J3976 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N MET J3982 " --> pdb=" O ASP J3978 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N LEU J3983 " --> pdb=" O MET J3979 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N LEU J3987 " --> pdb=" O LEU J3983 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N GLU J3988 " --> pdb=" O LEU J3984 " (cutoff:3.500A) removed outlier: 5.908A pdb=" N GLY J3989 " --> pdb=" O SER J3985 " (cutoff:3.500A) Processing helix chain 'J' and resid 3994 through 4008 removed outlier: 3.565A pdb=" N VAL J4001 " --> pdb=" O GLY J3997 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N SER J4007 " --> pdb=" O MET J4003 " (cutoff:3.500A) Processing helix chain 'J' and resid 4009 through 4030 removed outlier: 4.561A pdb=" N MET J4013 " --> pdb=" O ASN J4009 " (cutoff:3.500A) removed outlier: 4.315A pdb=" N ILE J4014 " --> pdb=" O ASN J4010 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N LEU J4015 " --> pdb=" O VAL J4011 " (cutoff:3.500A) removed outlier: 4.124A pdb=" N MET J4020 " --> pdb=" O LYS J4016 " (cutoff:3.500A) removed outlier: 4.090A pdb=" N PHE J4021 " --> pdb=" O PHE J4017 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N LYS J4023 " --> pdb=" O ASP J4019 " (cutoff:3.500A) removed outlier: 3.987A pdb=" N LEU J4024 " --> pdb=" O MET J4020 " (cutoff:3.500A) removed outlier: 4.560A pdb=" N LYS J4025 " --> pdb=" O PHE J4021 " (cutoff:3.500A) removed outlier: 5.001A pdb=" N ASP J4026 " --> pdb=" O LEU J4022 " (cutoff:3.500A) Processing helix chain 'J' and resid 4031 through 4036 removed outlier: 4.262A pdb=" N TYR J4036 " --> pdb=" O THR J4032 " (cutoff:3.500A) Processing helix chain 'J' and resid 4045 through 4057 removed outlier: 4.418A pdb=" N PHE J4049 " --> pdb=" O SER J4045 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N HIS J4056 " --> pdb=" O ALA J4052 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N LYS J4057 " --> pdb=" O MET J4053 " (cutoff:3.500A) Processing helix chain 'J' and resid 4060 through 4069 removed outlier: 4.065A pdb=" N GLU J4065 " --> pdb=" O GLN J4061 " (cutoff:3.500A) removed outlier: 4.597A pdb=" N PHE J4066 " --> pdb=" O SER J4062 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N LEU J4068 " --> pdb=" O THR J4064 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N SER J4069 " --> pdb=" O GLU J4065 " (cutoff:3.500A) Processing helix chain 'J' and resid 4081 through 4110 removed outlier: 4.025A pdb=" N VAL J4085 " --> pdb=" O TYR J4081 " (cutoff:3.500A) removed outlier: 5.018A pdb=" N GLU J4090 " --> pdb=" O LYS J4086 " (cutoff:3.500A) Proline residue: J4091 - end of helix removed outlier: 4.316A pdb=" N ASP J4094 " --> pdb=" O GLU J4090 " (cutoff:3.500A) removed outlier: 5.664A pdb=" N ILE J4095 " --> pdb=" O PRO J4091 " (cutoff:3.500A) removed outlier: 5.251A pdb=" N GLY J4096 " --> pdb=" O ALA J4092 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N PHE J4097 " --> pdb=" O LYS J4093 " (cutoff:3.500A) removed outlier: 4.229A pdb=" N ASN J4098 " --> pdb=" O ASP J4094 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N VAL J4099 " --> pdb=" O ILE J4095 " (cutoff:3.500A) Processing helix chain 'J' and resid 4113 through 4124 removed outlier: 3.840A pdb=" N GLN J4117 " --> pdb=" O ASP J4113 " (cutoff:3.500A) removed outlier: 4.202A pdb=" N THR J4118 " --> pdb=" O THR J4114 " (cutoff:3.500A) removed outlier: 4.409A pdb=" N PHE J4119 " --> pdb=" O ARG J4115 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N LEU J4122 " --> pdb=" O THR J4118 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLU J4124 " --> pdb=" O LEU J4120 " (cutoff:3.500A) Processing helix chain 'J' and resid 4125 through 4132 removed outlier: 4.388A pdb=" N TYR J4129 " --> pdb=" O SER J4125 " (cutoff:3.500A) removed outlier: 4.076A pdb=" N GLN J4131 " --> pdb=" O LEU J4127 " (cutoff:3.500A) Proline residue: J4132 - end of helix Processing helix chain 'J' and resid 4154 through 4163 removed outlier: 3.771A pdb=" N ARG J4158 " --> pdb=" O SER J4154 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N THR J4159 " --> pdb=" O GLU J4155 " (cutoff:3.500A) removed outlier: 4.977A pdb=" N GLN J4160 " --> pdb=" O SER J4156 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N TRP J4161 " --> pdb=" O SER J4157 " (cutoff:3.500A) removed outlier: 4.687A pdb=" N GLU J4162 " --> pdb=" O ARG J4158 " (cutoff:3.500A) removed outlier: 5.063A pdb=" N LYS J4163 " --> pdb=" O THR J4159 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 4154 through 4163' Processing helix chain 'J' and resid 4164 through 4180 removed outlier: 3.989A pdb=" N SER J4169 " --> pdb=" O GLN J4165 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N PHE J4173 " --> pdb=" O SER J4169 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N PHE J4175 " --> pdb=" O ARG J4171 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N ASP J4176 " --> pdb=" O GLN J4172 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ASN J4179 " --> pdb=" O PHE J4175 " (cutoff:3.500A) Processing helix chain 'J' and resid 4185 through 4207 removed outlier: 3.958A pdb=" N ASP J4196 " --> pdb=" O ASN J4192 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N PHE J4199 " --> pdb=" O GLU J4195 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N ALA J4205 " --> pdb=" O MET J4201 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N GLN J4206 " --> pdb=" O GLN J4202 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N ILE J4207 " --> pdb=" O LEU J4203 " (cutoff:3.500A) Processing helix chain 'J' and resid 4486 through 4500 removed outlier: 4.009A pdb=" N LYS J4491 " --> pdb=" O ALA J4487 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N ALA J4497 " --> pdb=" O LEU J4493 " (cutoff:3.500A) removed outlier: 4.149A pdb=" N ARG J4498 " --> pdb=" O ASN J4494 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N PHE J4500 " --> pdb=" O PHE J4496 " (cutoff:3.500A) Processing helix chain 'J' and resid 4501 through 4521 removed outlier: 4.131A pdb=" N MET J4505 " --> pdb=" O TYR J4501 " (cutoff:3.500A) removed outlier: 4.910A pdb=" N LEU J4506 " --> pdb=" O ASN J4502 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N LEU J4508 " --> pdb=" O ARG J4504 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N PHE J4509 " --> pdb=" O MET J4505 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N ALA J4511 " --> pdb=" O ALA J4507 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N ALA J4513 " --> pdb=" O PHE J4509 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N ASN J4515 " --> pdb=" O ALA J4511 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N ILE J4517 " --> pdb=" O ALA J4513 " (cutoff:3.500A) removed outlier: 4.495A pdb=" N LEU J4519 " --> pdb=" O ASN J4515 " (cutoff:3.500A) removed outlier: 4.399A pdb=" N PHE J4520 " --> pdb=" O PHE J4516 " (cutoff:3.500A) removed outlier: 4.598A pdb=" N TYR J4521 " --> pdb=" O ILE J4517 " (cutoff:3.500A) Processing helix chain 'J' and resid 4568 through 4613 removed outlier: 4.980A pdb=" N THR J4572 " --> pdb=" O TYR J4568 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N LEU J4573 " --> pdb=" O MET J4569 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N LEU J4576 " --> pdb=" O THR J4572 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N ILE J4578 " --> pdb=" O ARG J4574 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N THR J4581 " --> pdb=" O ALA J4577 " (cutoff:3.500A) removed outlier: 4.415A pdb=" N ILE J4588 " --> pdb=" O SER J4584 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N TYR J4591 " --> pdb=" O CYS J4587 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU J4594 " --> pdb=" O GLY J4590 " (cutoff:3.500A) removed outlier: 5.209A pdb=" N VAL J4596 " --> pdb=" O TYR J4592 " (cutoff:3.500A) Proline residue: J4597 - end of helix removed outlier: 3.535A pdb=" N ARG J4603 " --> pdb=" O VAL J4599 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N GLU J4606 " --> pdb=" O LYS J4602 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N GLU J4612 " --> pdb=" O ALA J4608 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N PHE J4613 " --> pdb=" O ARG J4609 " (cutoff:3.500A) Processing helix chain 'J' and resid 4626 through 4638 removed outlier: 3.758A pdb=" N ARG J4633 " --> pdb=" O GLY J4629 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N LEU J4634 " --> pdb=" O GLN J4630 " (cutoff:3.500A) removed outlier: 4.665A pdb=" N VAL J4635 " --> pdb=" O TRP J4631 " (cutoff:3.500A) removed outlier: 4.218A pdb=" N ILE J4636 " --> pdb=" O ASP J4632 " (cutoff:3.500A) removed outlier: 4.673A pdb=" N ASN J4637 " --> pdb=" O ARG J4633 " (cutoff:3.500A) removed outlier: 5.071A pdb=" N THR J4638 " --> pdb=" O LEU J4634 " (cutoff:3.500A) Processing helix chain 'J' and resid 4649 through 4658 removed outlier: 3.692A pdb=" N LYS J4653 " --> pdb=" O PHE J4649 " (cutoff:3.500A) removed outlier: 4.472A pdb=" N MET J4655 " --> pdb=" O LYS J4651 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N ASP J4656 " --> pdb=" O ARG J4652 " (cutoff:3.500A) Processing helix chain 'J' and resid 4663 through 4672 removed outlier: 3.540A pdb=" N ILE J4667 " --> pdb=" O GLY J4663 " (cutoff:3.500A) removed outlier: 4.038A pdb=" N SER J4668 " --> pdb=" O ARG J4664 " (cutoff:3.500A) Processing helix chain 'J' and resid 4703 through 4717 removed outlier: 3.507A pdb=" N TRP J4709 " --> pdb=" O LYS J4705 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N GLY J4712 " --> pdb=" O MET J4708 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N VAL J4713 " --> pdb=" O TRP J4709 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N THR J4716 " --> pdb=" O GLY J4712 " (cutoff:3.500A) Processing helix chain 'J' and resid 4718 through 4736 removed outlier: 3.783A pdb=" N TYR J4722 " --> pdb=" O ASN J4718 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N MET J4727 " --> pdb=" O LEU J4723 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N MET J4729 " --> pdb=" O TRP J4725 " (cutoff:3.500A) removed outlier: 4.133A pdb=" N SER J4730 " --> pdb=" O TYR J4726 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LEU J4732 " --> pdb=" O THR J4728 " (cutoff:3.500A) removed outlier: 4.352A pdb=" N HIS J4734 " --> pdb=" O SER J4730 " (cutoff:3.500A) removed outlier: 4.139A pdb=" N TYR J4735 " --> pdb=" O VAL J4731 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N ASN J4736 " --> pdb=" O LEU J4732 " (cutoff:3.500A) Processing helix chain 'J' and resid 4738 through 4751 removed outlier: 4.880A pdb=" N ALA J4742 " --> pdb=" O PHE J4738 " (cutoff:3.500A) removed outlier: 4.827A pdb=" N HIS J4743 " --> pdb=" O PHE J4739 " (cutoff:3.500A) removed outlier: 4.676A pdb=" N LEU J4744 " --> pdb=" O PHE J4740 " (cutoff:3.500A) removed outlier: 5.238A pdb=" N LEU J4745 " --> pdb=" O ALA J4741 " (cutoff:3.500A) removed outlier: 5.544A pdb=" N ASP J4746 " --> pdb=" O ALA J4742 " (cutoff:3.500A) removed outlier: 4.952A pdb=" N ILE J4747 " --> pdb=" O HIS J4743 " (cutoff:3.500A) removed outlier: 4.571A pdb=" N ALA J4748 " --> pdb=" O LEU J4744 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N MET J4749 " --> pdb=" O LEU J4745 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N GLY J4750 " --> pdb=" O ASP J4746 " (cutoff:3.500A) Processing helix chain 'J' and resid 4752 through 4763 removed outlier: 4.548A pdb=" N ILE J4757 " --> pdb=" O THR J4753 " (cutoff:3.500A) removed outlier: 4.853A pdb=" N THR J4762 " --> pdb=" O LEU J4758 " (cutoff:3.500A) Processing helix chain 'J' and resid 4764 through 4789 removed outlier: 3.597A pdb=" N LEU J4768 " --> pdb=" O ASN J4764 " (cutoff:3.500A) removed outlier: 4.579A pdb=" N LEU J4770 " --> pdb=" O LYS J4766 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N LEU J4774 " --> pdb=" O LEU J4770 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N VAL J4777 " --> pdb=" O GLY J4773 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N TYR J4780 " --> pdb=" O ALA J4776 " (cutoff:3.500A) removed outlier: 3.830A pdb=" N VAL J4785 " --> pdb=" O LEU J4781 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N ALA J4786 " --> pdb=" O TYR J4782 " (cutoff:3.500A) Processing helix chain 'J' and resid 4809 through 4824 removed outlier: 3.544A pdb=" N MET J4815 " --> pdb=" O LEU J4811 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N PHE J4816 " --> pdb=" O THR J4812 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N VAL J4822 " --> pdb=" O MET J4818 " (cutoff:3.500A) removed outlier: 4.574A pdb=" N ARG J4823 " --> pdb=" O TYR J4819 " (cutoff:3.500A) Processing helix chain 'J' and resid 4828 through 4833 removed outlier: 4.189A pdb=" N ILE J4832 " --> pdb=" O ILE J4828 " (cutoff:3.500A) removed outlier: 6.805A pdb=" N GLU J4833 " --> pdb=" O GLY J4829 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 4828 through 4833' Processing helix chain 'J' and resid 4840 through 4855 removed outlier: 3.934A pdb=" N PHE J4847 " --> pdb=" O TYR J4843 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N THR J4850 " --> pdb=" O ILE J4846 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N PHE J4851 " --> pdb=" O PHE J4847 " (cutoff:3.500A) Processing helix chain 'J' and resid 4859 through 4888 removed outlier: 3.808A pdb=" N ILE J4863 " --> pdb=" O LEU J4859 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N GLN J4864 " --> pdb=" O LEU J4860 " (cutoff:3.500A) removed outlier: 3.867A pdb=" N LEU J4866 " --> pdb=" O ILE J4862 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N ILE J4867 " --> pdb=" O ILE J4863 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N ALA J4870 " --> pdb=" O LEU J4866 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N PHE J4871 " --> pdb=" O ILE J4867 " (cutoff:3.500A) removed outlier: 4.037A pdb=" N GLU J4873 " --> pdb=" O ASP J4869 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N ARG J4875 " --> pdb=" O PHE J4871 " (cutoff:3.500A) removed outlier: 3.819A pdb=" N GLN J4878 " --> pdb=" O LEU J4874 " (cutoff:3.500A) Processing helix chain 'J' and resid 4895 through 4900 removed outlier: 4.096A pdb=" N PHE J4899 " --> pdb=" O GLY J4895 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ASP J4900 " --> pdb=" O ASN J4896 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 4895 through 4900' Processing helix chain 'J' and resid 4904 through 4912 removed outlier: 3.520A pdb=" N HIS J4909 " --> pdb=" O GLY J4905 " (cutoff:3.500A) Processing helix chain 'J' and resid 4915 through 4929 removed outlier: 4.000A pdb=" N TYR J4919 " --> pdb=" O ASN J4915 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N LEU J4920 " --> pdb=" O LEU J4916 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N LEU J4923 " --> pdb=" O TYR J4919 " (cutoff:3.500A) removed outlier: 3.967A pdb=" N ILE J4927 " --> pdb=" O LEU J4923 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N ASN J4928 " --> pdb=" O MET J4924 " (cutoff:3.500A) Processing helix chain 'J' and resid 4935 through 4948 removed outlier: 3.706A pdb=" N SER J4939 " --> pdb=" O THR J4935 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N TYR J4940 " --> pdb=" O GLY J4936 " (cutoff:3.500A) removed outlier: 4.227A pdb=" N TRP J4942 " --> pdb=" O GLU J4938 " (cutoff:3.500A) Processing helix chain 'J' and resid 4958 through 4963 removed outlier: 6.019A pdb=" N GLN J4962 " --> pdb=" O CYS J4958 " (cutoff:3.500A) Processing helix chain 'J' and resid 398 through 403 removed outlier: 4.201A pdb=" N ASP J 401 " --> pdb=" O HIS J 398 " (cutoff:3.500A) removed outlier: 4.448A pdb=" N GLY J 402 " --> pdb=" O MET J 399 " (cutoff:3.500A) removed outlier: 4.764A pdb=" N LEU J 403 " --> pdb=" O ASP J 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 398 through 403' Processing helix chain 'J' and resid 2708 through 2713 removed outlier: 4.582A pdb=" N ASN J2711 " --> pdb=" O ASP J2708 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ILE J2712 " --> pdb=" O THR J2709 " (cutoff:3.500A) removed outlier: 5.336A pdb=" N THR J2713 " --> pdb=" O SER J2710 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 2708 through 2713' Processing helix chain 'B' and resid 38 through 43 removed outlier: 5.137A pdb=" N ARG B 42 " --> pdb=" O SER B 38 " (cutoff:3.500A) Processing helix chain 'B' and resid 56 through 67 removed outlier: 3.636A pdb=" N GLN B 65 " --> pdb=" O GLU B 61 " (cutoff:3.500A) removed outlier: 4.428A pdb=" N MET B 66 " --> pdb=" O GLY B 62 " (cutoff:3.500A) removed outlier: 5.873A pdb=" N SER B 67 " --> pdb=" O ALA B 63 " (cutoff:3.500A) Processing helix chain 'B' and resid 77 through 82 removed outlier: 3.870A pdb=" N TYR B 82 " --> pdb=" O PRO B 78 " (cutoff:3.500A) Processing helix chain 'E' and resid 38 through 43 removed outlier: 5.136A pdb=" N ARG E 42 " --> pdb=" O SER E 38 " (cutoff:3.500A) Processing helix chain 'E' and resid 56 through 67 removed outlier: 3.636A pdb=" N GLN E 65 " --> pdb=" O GLU E 61 " (cutoff:3.500A) removed outlier: 4.429A pdb=" N MET E 66 " --> pdb=" O GLY E 62 " (cutoff:3.500A) removed outlier: 5.872A pdb=" N SER E 67 " --> pdb=" O ALA E 63 " (cutoff:3.500A) Processing helix chain 'E' and resid 77 through 82 removed outlier: 3.870A pdb=" N TYR E 82 " --> pdb=" O PRO E 78 " (cutoff:3.500A) Processing helix chain 'H' and resid 38 through 43 removed outlier: 5.136A pdb=" N ARG H 42 " --> pdb=" O SER H 38 " (cutoff:3.500A) Processing helix chain 'H' and resid 56 through 67 removed outlier: 3.636A pdb=" N GLN H 65 " --> pdb=" O GLU H 61 " (cutoff:3.500A) removed outlier: 4.428A pdb=" N MET H 66 " --> pdb=" O GLY H 62 " (cutoff:3.500A) removed outlier: 5.873A pdb=" N SER H 67 " --> pdb=" O ALA H 63 " (cutoff:3.500A) Processing helix chain 'H' and resid 77 through 82 removed outlier: 3.870A pdb=" N TYR H 82 " --> pdb=" O PRO H 78 " (cutoff:3.500A) Processing helix chain 'K' and resid 38 through 43 removed outlier: 5.137A pdb=" N ARG K 42 " --> pdb=" O SER K 38 " (cutoff:3.500A) Processing helix chain 'K' and resid 56 through 67 removed outlier: 3.636A pdb=" N GLN K 65 " --> pdb=" O GLU K 61 " (cutoff:3.500A) removed outlier: 4.428A pdb=" N MET K 66 " --> pdb=" O GLY K 62 " (cutoff:3.500A) removed outlier: 5.873A pdb=" N SER K 67 " --> pdb=" O ALA K 63 " (cutoff:3.500A) Processing helix chain 'K' and resid 77 through 82 removed outlier: 3.870A pdb=" N TYR K 82 " --> pdb=" O PRO K 78 " (cutoff:3.500A) Processing helix chain 'C' and resid 10 through 22 removed outlier: 4.510A pdb=" N LYS C 14 " --> pdb=" O ILE C 10 " (cutoff:3.500A) removed outlier: 5.240A pdb=" N LYS C 22 " --> pdb=" O SER C 18 " (cutoff:3.500A) Processing helix chain 'C' and resid 29 through 41 removed outlier: 4.048A pdb=" N LEU C 33 " --> pdb=" O THR C 29 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N SER C 39 " --> pdb=" O THR C 35 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N GLY C 41 " --> pdb=" O MET C 37 " (cutoff:3.500A) Processing helix chain 'C' and resid 45 through 57 removed outlier: 3.501A pdb=" N ILE C 53 " --> pdb=" O LEU C 49 " (cutoff:3.500A) removed outlier: 6.081A pdb=" N VAL C 56 " --> pdb=" O MET C 52 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N ASP C 57 " --> pdb=" O ILE C 53 " (cutoff:3.500A) Processing helix chain 'C' and resid 65 through 77 Processing helix chain 'F' and resid 10 through 22 removed outlier: 4.511A pdb=" N LYS F 14 " --> pdb=" O ILE F 10 " (cutoff:3.500A) removed outlier: 5.240A pdb=" N LYS F 22 " --> pdb=" O SER F 18 " (cutoff:3.500A) Processing helix chain 'F' and resid 29 through 41 removed outlier: 4.048A pdb=" N LEU F 33 " --> pdb=" O THR F 29 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N SER F 39 " --> pdb=" O THR F 35 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N GLY F 41 " --> pdb=" O MET F 37 " (cutoff:3.500A) Processing helix chain 'F' and resid 45 through 57 removed outlier: 3.501A pdb=" N ILE F 53 " --> pdb=" O LEU F 49 " (cutoff:3.500A) removed outlier: 6.081A pdb=" N VAL F 56 " --> pdb=" O MET F 52 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N ASP F 57 " --> pdb=" O ILE F 53 " (cutoff:3.500A) Processing helix chain 'F' and resid 65 through 77 Processing helix chain 'I' and resid 10 through 22 removed outlier: 4.510A pdb=" N LYS I 14 " --> pdb=" O ILE I 10 " (cutoff:3.500A) removed outlier: 5.240A pdb=" N LYS I 22 " --> pdb=" O SER I 18 " (cutoff:3.500A) Processing helix chain 'I' and resid 29 through 41 removed outlier: 4.048A pdb=" N LEU I 33 " --> pdb=" O THR I 29 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N SER I 39 " --> pdb=" O THR I 35 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N GLY I 41 " --> pdb=" O MET I 37 " (cutoff:3.500A) Processing helix chain 'I' and resid 45 through 57 removed outlier: 3.501A pdb=" N ILE I 53 " --> pdb=" O LEU I 49 " (cutoff:3.500A) removed outlier: 6.082A pdb=" N VAL I 56 " --> pdb=" O MET I 52 " (cutoff:3.500A) removed outlier: 4.495A pdb=" N ASP I 57 " --> pdb=" O ILE I 53 " (cutoff:3.500A) Processing helix chain 'I' and resid 65 through 77 Processing helix chain 'L' and resid 10 through 22 removed outlier: 4.511A pdb=" N LYS L 14 " --> pdb=" O ILE L 10 " (cutoff:3.500A) removed outlier: 5.240A pdb=" N LYS L 22 " --> pdb=" O SER L 18 " (cutoff:3.500A) Processing helix chain 'L' and resid 29 through 41 removed outlier: 4.048A pdb=" N LEU L 33 " --> pdb=" O THR L 29 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N SER L 39 " --> pdb=" O THR L 35 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N GLY L 41 " --> pdb=" O MET L 37 " (cutoff:3.500A) Processing helix chain 'L' and resid 45 through 57 removed outlier: 3.501A pdb=" N ILE L 53 " --> pdb=" O LEU L 49 " (cutoff:3.500A) removed outlier: 6.081A pdb=" N VAL L 56 " --> pdb=" O MET L 52 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N ASP L 57 " --> pdb=" O ILE L 53 " (cutoff:3.500A) Processing helix chain 'L' and resid 65 through 77 Processing sheet with id= 1, first strand: chain 'A' and resid 47 through 50 removed outlier: 5.344A pdb=" N LEU A 22 " --> pdb=" O LEU A 37 " (cutoff:3.500A) removed outlier: 10.465A pdb=" N ALA A 39 " --> pdb=" O VAL A 20 " (cutoff:3.500A) removed outlier: 13.444A pdb=" N VAL A 20 " --> pdb=" O ALA A 39 " (cutoff:3.500A) removed outlier: 6.816A pdb=" N GLU A 19 " --> pdb=" O ILE A 217 " (cutoff:3.500A) Processing sheet with id= 2, first strand: chain 'A' and resid 67 through 70 removed outlier: 6.630A pdb=" N LEU A 120 " --> pdb=" O GLU A 70 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'A' and resid 159 through 164 removed outlier: 7.978A pdb=" N TRP A 159 " --> pdb=" O VAL A 186 " (cutoff:3.500A) Processing sheet with id= 4, first strand: chain 'A' and resid 192 through 196 removed outlier: 4.546A pdb=" N HIS A 202 " --> pdb=" O SER A 195 " (cutoff:3.500A) Processing sheet with id= 5, first strand: chain 'A' and resid 234 through 237 Processing sheet with id= 6, first strand: chain 'A' and resid 244 through 247 Processing sheet with id= 7, first strand: chain 'A' and resid 275 through 279 Processing sheet with id= 8, first strand: chain 'A' and resid 304 through 309 removed outlier: 3.573A pdb=" N LEU A 315 " --> pdb=" O SER A 307 " (cutoff:3.500A) Processing sheet with id= 9, first strand: chain 'A' and resid 329 through 332 removed outlier: 3.699A pdb=" N PHE A 362 " --> pdb=" O ARG A 332 " (cutoff:3.500A) Processing sheet with id= 10, first strand: chain 'A' and resid 370 through 374 Processing sheet with id= 11, first strand: chain 'A' and resid 676 through 680 removed outlier: 3.702A pdb=" N GLU A 676 " --> pdb=" O LEU A 803 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N LEU A 803 " --> pdb=" O GLU A 676 " (cutoff:3.500A) removed outlier: 5.248A pdb=" N LYS A 799 " --> pdb=" O ASP A 680 " (cutoff:3.500A) removed outlier: 4.705A pdb=" N TRP A1617 " --> pdb=" O PHE A 802 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N LEU A1618 " --> pdb=" O GLU A1613 " (cutoff:3.500A) Processing sheet with id= 12, first strand: chain 'A' and resid 723 through 726 removed outlier: 3.522A pdb=" N PHE A 723 " --> pdb=" O TRP A 697 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N VAL A 792 " --> pdb=" O MET A 655 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N SER A 653 " --> pdb=" O PHE A 794 " (cutoff:3.500A) Processing sheet with id= 13, first strand: chain 'A' and resid 756 through 760 removed outlier: 3.511A pdb=" N SER A 767 " --> pdb=" O CYS A 758 " (cutoff:3.500A) removed outlier: 5.089A pdb=" N SER A 765 " --> pdb=" O ASP A 760 " (cutoff:3.500A) Processing sheet with id= 14, first strand: chain 'A' and resid 902 through 905 removed outlier: 4.367A pdb=" N GLN A 903 " --> pdb=" O ARG A 913 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N GLY A 905 " --> pdb=" O HIS A 915 " (cutoff:3.500A) Processing sheet with id= 15, first strand: chain 'A' and resid 1099 through 1108 removed outlier: 5.331A pdb=" N GLY A1099 " --> pdb=" O MET A1168 " (cutoff:3.500A) removed outlier: 5.754A pdb=" N PHE A1105 " --> pdb=" O VAL A1162 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N ALA A1107 " --> pdb=" O ASP A1160 " (cutoff:3.500A) Processing sheet with id= 16, first strand: chain 'A' and resid 1143 through 1146 removed outlier: 3.809A pdb=" N GLN A1143 " --> pdb=" O ASP A1138 " (cutoff:3.500A) removed outlier: 6.720A pdb=" N MET A1113 " --> pdb=" O GLY A1139 " (cutoff:3.500A) removed outlier: 7.186A pdb=" N ASP A1112 " --> pdb=" O GLY A1208 " (cutoff:3.500A) removed outlier: 4.204A pdb=" N GLY A1208 " --> pdb=" O ASP A1112 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N ARG A1114 " --> pdb=" O SER A1206 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N GLY A1116 " --> pdb=" O VAL A1204 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N ALA A1090 " --> pdb=" O PRO A1203 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N PHE A1088 " --> pdb=" O CYS A1205 " (cutoff:3.500A) removed outlier: 6.329A pdb=" N ILE A1087 " --> pdb=" O SER A1252 " (cutoff:3.500A) removed outlier: 7.240A pdb=" N THR A1248 " --> pdb=" O GLU A1091 " (cutoff:3.500A) removed outlier: 6.776A pdb=" N MET A1249 " --> pdb=" O PHE A1603 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N PHE A1603 " --> pdb=" O MET A1249 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N LEU A1251 " --> pdb=" O ASN A1601 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N LYS A1253 " --> pdb=" O MET A1599 " (cutoff:3.500A) removed outlier: 4.817A pdb=" N MET A1599 " --> pdb=" O LYS A1253 " (cutoff:3.500A) Processing sheet with id= 17, first strand: chain 'A' and resid 1267 through 1274 removed outlier: 5.142A pdb=" N HIS A1267 " --> pdb=" O GLN A1293 " (cutoff:3.500A) removed outlier: 4.413A pdb=" N GLN A1293 " --> pdb=" O HIS A1267 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N GLU A1269 " --> pdb=" O GLY A1291 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N GLY A1291 " --> pdb=" O GLU A1269 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N THR A1271 " --> pdb=" O SER A1289 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ILE A1273 " --> pdb=" O GLN A1287 " (cutoff:3.500A) removed outlier: 3.612A pdb=" N GLN A1287 " --> pdb=" O ILE A1273 " (cutoff:3.500A) Processing sheet with id= 18, first strand: chain 'A' and resid 1307 through 1310 removed outlier: 6.616A pdb=" N THR A1537 " --> pdb=" O CYS A1310 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N ALA A1545 " --> pdb=" O MET A1300 " (cutoff:3.500A) removed outlier: 5.313A pdb=" N PHE A1301 " --> pdb=" O LEU A1595 " (cutoff:3.500A) removed outlier: 7.497A pdb=" N LEU A1591 " --> pdb=" O SER A1305 " (cutoff:3.500A) Processing sheet with id= 19, first strand: chain 'A' and resid 1466 through 1470 removed outlier: 7.081A pdb=" N VAL A1467 " --> pdb=" O ILE A1480 " (cutoff:3.500A) removed outlier: 4.990A pdb=" N LEU A1469 " --> pdb=" O GLU A1478 " (cutoff:3.500A) removed outlier: 5.128A pdb=" N GLU A1478 " --> pdb=" O LEU A1469 " (cutoff:3.500A) Processing sheet with id= 20, first strand: chain 'A' and resid 1486 through 1490 No H-bonds generated for sheet with id= 20 Processing sheet with id= 21, first strand: chain 'A' and resid 1516 through 1521 removed outlier: 4.842A pdb=" N GLU A1506 " --> pdb=" O VAL A1430 " (cutoff:3.500A) removed outlier: 3.899A pdb=" N VAL A1430 " --> pdb=" O GLU A1506 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N GLY A1508 " --> pdb=" O TYR A1428 " (cutoff:3.500A) removed outlier: 4.228A pdb=" N TYR A1428 " --> pdb=" O GLY A1508 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N TYR A1426 " --> pdb=" O VAL A1510 " (cutoff:3.500A) removed outlier: 6.957A pdb=" N SER A1429 " --> pdb=" O GLU A1556 " (cutoff:3.500A) removed outlier: 4.287A pdb=" N ARG A1431 " --> pdb=" O GLN A1554 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N GLN A1554 " --> pdb=" O ARG A1431 " (cutoff:3.500A) Processing sheet with id= 22, first strand: chain 'A' and resid 4133 through 4140 removed outlier: 5.262A pdb=" N PHE A4133 " --> pdb=" O ILE A4153 " (cutoff:3.500A) Processing sheet with id= 23, first strand: chain 'A' and resid 1441 through 1446 removed outlier: 3.528A pdb=" N PHE A1544 " --> pdb=" O TRP A1442 " (cutoff:3.500A) Processing sheet with id= 24, first strand: chain 'D' and resid 47 through 50 removed outlier: 5.343A pdb=" N LEU D 22 " --> pdb=" O LEU D 37 " (cutoff:3.500A) removed outlier: 10.465A pdb=" N ALA D 39 " --> pdb=" O VAL D 20 " (cutoff:3.500A) removed outlier: 13.444A pdb=" N VAL D 20 " --> pdb=" O ALA D 39 " (cutoff:3.500A) removed outlier: 6.816A pdb=" N GLU D 19 " --> pdb=" O ILE D 217 " (cutoff:3.500A) Processing sheet with id= 25, first strand: chain 'D' and resid 67 through 70 removed outlier: 6.630A pdb=" N LEU D 120 " --> pdb=" O GLU D 70 " (cutoff:3.500A) Processing sheet with id= 26, first strand: chain 'D' and resid 159 through 164 removed outlier: 7.978A pdb=" N TRP D 159 " --> pdb=" O VAL D 186 " (cutoff:3.500A) Processing sheet with id= 27, first strand: chain 'D' and resid 192 through 196 removed outlier: 4.547A pdb=" N HIS D 202 " --> pdb=" O SER D 195 " (cutoff:3.500A) Processing sheet with id= 28, first strand: chain 'D' and resid 234 through 237 Processing sheet with id= 29, first strand: chain 'D' and resid 244 through 247 Processing sheet with id= 30, first strand: chain 'D' and resid 275 through 279 Processing sheet with id= 31, first strand: chain 'D' and resid 304 through 309 removed outlier: 3.572A pdb=" N LEU D 315 " --> pdb=" O SER D 307 " (cutoff:3.500A) Processing sheet with id= 32, first strand: chain 'D' and resid 329 through 332 removed outlier: 3.699A pdb=" N PHE D 362 " --> pdb=" O ARG D 332 " (cutoff:3.500A) Processing sheet with id= 33, first strand: chain 'D' and resid 370 through 374 Processing sheet with id= 34, first strand: chain 'D' and resid 676 through 680 removed outlier: 3.701A pdb=" N GLU D 676 " --> pdb=" O LEU D 803 " (cutoff:3.500A) removed outlier: 3.786A pdb=" N LEU D 803 " --> pdb=" O GLU D 676 " (cutoff:3.500A) removed outlier: 5.248A pdb=" N LYS D 799 " --> pdb=" O ASP D 680 " (cutoff:3.500A) removed outlier: 4.705A pdb=" N TRP D1617 " --> pdb=" O PHE D 802 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N LEU D1618 " --> pdb=" O GLU D1613 " (cutoff:3.500A) Processing sheet with id= 35, first strand: chain 'D' and resid 723 through 726 removed outlier: 3.522A pdb=" N PHE D 723 " --> pdb=" O TRP D 697 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N VAL D 792 " --> pdb=" O MET D 655 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N SER D 653 " --> pdb=" O PHE D 794 " (cutoff:3.500A) Processing sheet with id= 36, first strand: chain 'D' and resid 756 through 760 removed outlier: 3.511A pdb=" N SER D 767 " --> pdb=" O CYS D 758 " (cutoff:3.500A) removed outlier: 5.088A pdb=" N SER D 765 " --> pdb=" O ASP D 760 " (cutoff:3.500A) Processing sheet with id= 37, first strand: chain 'D' and resid 902 through 905 removed outlier: 4.366A pdb=" N GLN D 903 " --> pdb=" O ARG D 913 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N GLY D 905 " --> pdb=" O HIS D 915 " (cutoff:3.500A) Processing sheet with id= 38, first strand: chain 'D' and resid 1099 through 1108 removed outlier: 5.331A pdb=" N GLY D1099 " --> pdb=" O MET D1168 " (cutoff:3.500A) removed outlier: 5.753A pdb=" N PHE D1105 " --> pdb=" O VAL D1162 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N ALA D1107 " --> pdb=" O ASP D1160 " (cutoff:3.500A) Processing sheet with id= 39, first strand: chain 'D' and resid 1143 through 1146 removed outlier: 3.809A pdb=" N GLN D1143 " --> pdb=" O ASP D1138 " (cutoff:3.500A) removed outlier: 6.720A pdb=" N MET D1113 " --> pdb=" O GLY D1139 " (cutoff:3.500A) removed outlier: 7.185A pdb=" N ASP D1112 " --> pdb=" O GLY D1208 " (cutoff:3.500A) removed outlier: 4.204A pdb=" N GLY D1208 " --> pdb=" O ASP D1112 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N ARG D1114 " --> pdb=" O SER D1206 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N GLY D1116 " --> pdb=" O VAL D1204 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N ALA D1090 " --> pdb=" O PRO D1203 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N PHE D1088 " --> pdb=" O CYS D1205 " (cutoff:3.500A) removed outlier: 6.330A pdb=" N ILE D1087 " --> pdb=" O SER D1252 " (cutoff:3.500A) removed outlier: 7.240A pdb=" N THR D1248 " --> pdb=" O GLU D1091 " (cutoff:3.500A) removed outlier: 6.776A pdb=" N MET D1249 " --> pdb=" O PHE D1603 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N PHE D1603 " --> pdb=" O MET D1249 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N LEU D1251 " --> pdb=" O ASN D1601 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N LYS D1253 " --> pdb=" O MET D1599 " (cutoff:3.500A) removed outlier: 4.817A pdb=" N MET D1599 " --> pdb=" O LYS D1253 " (cutoff:3.500A) Processing sheet with id= 40, first strand: chain 'D' and resid 1267 through 1274 removed outlier: 5.143A pdb=" N HIS D1267 " --> pdb=" O GLN D1293 " (cutoff:3.500A) removed outlier: 4.413A pdb=" N GLN D1293 " --> pdb=" O HIS D1267 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N GLU D1269 " --> pdb=" O GLY D1291 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N GLY D1291 " --> pdb=" O GLU D1269 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N THR D1271 " --> pdb=" O SER D1289 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ILE D1273 " --> pdb=" O GLN D1287 " (cutoff:3.500A) removed outlier: 3.612A pdb=" N GLN D1287 " --> pdb=" O ILE D1273 " (cutoff:3.500A) Processing sheet with id= 41, first strand: chain 'D' and resid 1307 through 1310 removed outlier: 6.616A pdb=" N THR D1537 " --> pdb=" O CYS D1310 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N ALA D1545 " --> pdb=" O MET D1300 " (cutoff:3.500A) removed outlier: 5.313A pdb=" N PHE D1301 " --> pdb=" O LEU D1595 " (cutoff:3.500A) removed outlier: 7.497A pdb=" N LEU D1591 " --> pdb=" O SER D1305 " (cutoff:3.500A) Processing sheet with id= 42, first strand: chain 'D' and resid 1466 through 1470 removed outlier: 7.081A pdb=" N VAL D1467 " --> pdb=" O ILE D1480 " (cutoff:3.500A) removed outlier: 4.990A pdb=" N LEU D1469 " --> pdb=" O GLU D1478 " (cutoff:3.500A) removed outlier: 5.128A pdb=" N GLU D1478 " --> pdb=" O LEU D1469 " (cutoff:3.500A) Processing sheet with id= 43, first strand: chain 'D' and resid 1486 through 1490 No H-bonds generated for sheet with id= 43 Processing sheet with id= 44, first strand: chain 'D' and resid 1516 through 1521 removed outlier: 4.842A pdb=" N GLU D1506 " --> pdb=" O VAL D1430 " (cutoff:3.500A) removed outlier: 3.899A pdb=" N VAL D1430 " --> pdb=" O GLU D1506 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N GLY D1508 " --> pdb=" O TYR D1428 " (cutoff:3.500A) removed outlier: 4.228A pdb=" N TYR D1428 " --> pdb=" O GLY D1508 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N TYR D1426 " --> pdb=" O VAL D1510 " (cutoff:3.500A) removed outlier: 6.956A pdb=" N SER D1429 " --> pdb=" O GLU D1556 " (cutoff:3.500A) removed outlier: 4.287A pdb=" N ARG D1431 " --> pdb=" O GLN D1554 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N GLN D1554 " --> pdb=" O ARG D1431 " (cutoff:3.500A) Processing sheet with id= 45, first strand: chain 'D' and resid 4133 through 4140 removed outlier: 5.262A pdb=" N PHE D4133 " --> pdb=" O ILE D4153 " (cutoff:3.500A) Processing sheet with id= 46, first strand: chain 'D' and resid 1441 through 1446 removed outlier: 3.528A pdb=" N PHE D1544 " --> pdb=" O TRP D1442 " (cutoff:3.500A) Processing sheet with id= 47, first strand: chain 'G' and resid 47 through 50 removed outlier: 5.344A pdb=" N LEU G 22 " --> pdb=" O LEU G 37 " (cutoff:3.500A) removed outlier: 10.464A pdb=" N ALA G 39 " --> pdb=" O VAL G 20 " (cutoff:3.500A) removed outlier: 13.444A pdb=" N VAL G 20 " --> pdb=" O ALA G 39 " (cutoff:3.500A) removed outlier: 6.816A pdb=" N GLU G 19 " --> pdb=" O ILE G 217 " (cutoff:3.500A) Processing sheet with id= 48, first strand: chain 'G' and resid 67 through 70 removed outlier: 6.630A pdb=" N LEU G 120 " --> pdb=" O GLU G 70 " (cutoff:3.500A) Processing sheet with id= 49, first strand: chain 'G' and resid 159 through 164 removed outlier: 7.978A pdb=" N TRP G 159 " --> pdb=" O VAL G 186 " (cutoff:3.500A) Processing sheet with id= 50, first strand: chain 'G' and resid 192 through 196 removed outlier: 4.546A pdb=" N HIS G 202 " --> pdb=" O SER G 195 " (cutoff:3.500A) Processing sheet with id= 51, first strand: chain 'G' and resid 234 through 237 Processing sheet with id= 52, first strand: chain 'G' and resid 244 through 247 Processing sheet with id= 53, first strand: chain 'G' and resid 275 through 279 Processing sheet with id= 54, first strand: chain 'G' and resid 304 through 309 removed outlier: 3.573A pdb=" N LEU G 315 " --> pdb=" O SER G 307 " (cutoff:3.500A) Processing sheet with id= 55, first strand: chain 'G' and resid 329 through 332 removed outlier: 3.699A pdb=" N PHE G 362 " --> pdb=" O ARG G 332 " (cutoff:3.500A) Processing sheet with id= 56, first strand: chain 'G' and resid 370 through 374 Processing sheet with id= 57, first strand: chain 'G' and resid 676 through 680 removed outlier: 3.703A pdb=" N GLU G 676 " --> pdb=" O LEU G 803 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N LEU G 803 " --> pdb=" O GLU G 676 " (cutoff:3.500A) removed outlier: 5.248A pdb=" N LYS G 799 " --> pdb=" O ASP G 680 " (cutoff:3.500A) removed outlier: 4.705A pdb=" N TRP G1617 " --> pdb=" O PHE G 802 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N LEU G1618 " --> pdb=" O GLU G1613 " (cutoff:3.500A) Processing sheet with id= 58, first strand: chain 'G' and resid 723 through 726 removed outlier: 3.522A pdb=" N PHE G 723 " --> pdb=" O TRP G 697 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N VAL G 792 " --> pdb=" O MET G 655 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N SER G 653 " --> pdb=" O PHE G 794 " (cutoff:3.500A) Processing sheet with id= 59, first strand: chain 'G' and resid 756 through 760 removed outlier: 3.511A pdb=" N SER G 767 " --> pdb=" O CYS G 758 " (cutoff:3.500A) removed outlier: 5.089A pdb=" N SER G 765 " --> pdb=" O ASP G 760 " (cutoff:3.500A) Processing sheet with id= 60, first strand: chain 'G' and resid 902 through 905 removed outlier: 4.367A pdb=" N GLN G 903 " --> pdb=" O ARG G 913 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N GLY G 905 " --> pdb=" O HIS G 915 " (cutoff:3.500A) Processing sheet with id= 61, first strand: chain 'G' and resid 1099 through 1108 removed outlier: 5.330A pdb=" N GLY G1099 " --> pdb=" O MET G1168 " (cutoff:3.500A) removed outlier: 5.754A pdb=" N PHE G1105 " --> pdb=" O VAL G1162 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N ALA G1107 " --> pdb=" O ASP G1160 " (cutoff:3.500A) Processing sheet with id= 62, first strand: chain 'G' and resid 1143 through 1146 removed outlier: 3.809A pdb=" N GLN G1143 " --> pdb=" O ASP G1138 " (cutoff:3.500A) removed outlier: 6.720A pdb=" N MET G1113 " --> pdb=" O GLY G1139 " (cutoff:3.500A) removed outlier: 7.186A pdb=" N ASP G1112 " --> pdb=" O GLY G1208 " (cutoff:3.500A) removed outlier: 4.204A pdb=" N GLY G1208 " --> pdb=" O ASP G1112 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N ARG G1114 " --> pdb=" O SER G1206 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N GLY G1116 " --> pdb=" O VAL G1204 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N ALA G1090 " --> pdb=" O PRO G1203 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N PHE G1088 " --> pdb=" O CYS G1205 " (cutoff:3.500A) removed outlier: 6.329A pdb=" N ILE G1087 " --> pdb=" O SER G1252 " (cutoff:3.500A) removed outlier: 7.240A pdb=" N THR G1248 " --> pdb=" O GLU G1091 " (cutoff:3.500A) removed outlier: 6.776A pdb=" N MET G1249 " --> pdb=" O PHE G1603 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N PHE G1603 " --> pdb=" O MET G1249 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N LEU G1251 " --> pdb=" O ASN G1601 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N LYS G1253 " --> pdb=" O MET G1599 " (cutoff:3.500A) removed outlier: 4.817A pdb=" N MET G1599 " --> pdb=" O LYS G1253 " (cutoff:3.500A) Processing sheet with id= 63, first strand: chain 'G' and resid 1267 through 1274 removed outlier: 5.141A pdb=" N HIS G1267 " --> pdb=" O GLN G1293 " (cutoff:3.500A) removed outlier: 4.413A pdb=" N GLN G1293 " --> pdb=" O HIS G1267 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N GLU G1269 " --> pdb=" O GLY G1291 " (cutoff:3.500A) removed outlier: 4.029A pdb=" N GLY G1291 " --> pdb=" O GLU G1269 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N THR G1271 " --> pdb=" O SER G1289 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ILE G1273 " --> pdb=" O GLN G1287 " (cutoff:3.500A) removed outlier: 3.612A pdb=" N GLN G1287 " --> pdb=" O ILE G1273 " (cutoff:3.500A) Processing sheet with id= 64, first strand: chain 'G' and resid 1307 through 1310 removed outlier: 6.615A pdb=" N THR G1537 " --> pdb=" O CYS G1310 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N ALA G1545 " --> pdb=" O MET G1300 " (cutoff:3.500A) removed outlier: 5.313A pdb=" N PHE G1301 " --> pdb=" O LEU G1595 " (cutoff:3.500A) removed outlier: 7.498A pdb=" N LEU G1591 " --> pdb=" O SER G1305 " (cutoff:3.500A) Processing sheet with id= 65, first strand: chain 'G' and resid 1466 through 1470 removed outlier: 7.082A pdb=" N VAL G1467 " --> pdb=" O ILE G1480 " (cutoff:3.500A) removed outlier: 4.991A pdb=" N LEU G1469 " --> pdb=" O GLU G1478 " (cutoff:3.500A) removed outlier: 5.128A pdb=" N GLU G1478 " --> pdb=" O LEU G1469 " (cutoff:3.500A) Processing sheet with id= 66, first strand: chain 'G' and resid 1486 through 1490 No H-bonds generated for sheet with id= 66 Processing sheet with id= 67, first strand: chain 'G' and resid 1516 through 1521 removed outlier: 4.842A pdb=" N GLU G1506 " --> pdb=" O VAL G1430 " (cutoff:3.500A) removed outlier: 3.899A pdb=" N VAL G1430 " --> pdb=" O GLU G1506 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N GLY G1508 " --> pdb=" O TYR G1428 " (cutoff:3.500A) removed outlier: 4.228A pdb=" N TYR G1428 " --> pdb=" O GLY G1508 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N TYR G1426 " --> pdb=" O VAL G1510 " (cutoff:3.500A) removed outlier: 6.957A pdb=" N SER G1429 " --> pdb=" O GLU G1556 " (cutoff:3.500A) removed outlier: 4.287A pdb=" N ARG G1431 " --> pdb=" O GLN G1554 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N GLN G1554 " --> pdb=" O ARG G1431 " (cutoff:3.500A) Processing sheet with id= 68, first strand: chain 'G' and resid 4133 through 4140 removed outlier: 5.262A pdb=" N PHE G4133 " --> pdb=" O ILE G4153 " (cutoff:3.500A) Processing sheet with id= 69, first strand: chain 'G' and resid 1441 through 1446 removed outlier: 3.528A pdb=" N PHE G1544 " --> pdb=" O TRP G1442 " (cutoff:3.500A) Processing sheet with id= 70, first strand: chain 'J' and resid 47 through 50 removed outlier: 5.344A pdb=" N LEU J 22 " --> pdb=" O LEU J 37 " (cutoff:3.500A) removed outlier: 10.464A pdb=" N ALA J 39 " --> pdb=" O VAL J 20 " (cutoff:3.500A) removed outlier: 13.444A pdb=" N VAL J 20 " --> pdb=" O ALA J 39 " (cutoff:3.500A) removed outlier: 6.815A pdb=" N GLU J 19 " --> pdb=" O ILE J 217 " (cutoff:3.500A) Processing sheet with id= 71, first strand: chain 'J' and resid 67 through 70 removed outlier: 6.630A pdb=" N LEU J 120 " --> pdb=" O GLU J 70 " (cutoff:3.500A) Processing sheet with id= 72, first strand: chain 'J' and resid 159 through 164 removed outlier: 7.978A pdb=" N TRP J 159 " --> pdb=" O VAL J 186 " (cutoff:3.500A) Processing sheet with id= 73, first strand: chain 'J' and resid 192 through 196 removed outlier: 4.546A pdb=" N HIS J 202 " --> pdb=" O SER J 195 " (cutoff:3.500A) Processing sheet with id= 74, first strand: chain 'J' and resid 234 through 237 Processing sheet with id= 75, first strand: chain 'J' and resid 244 through 247 Processing sheet with id= 76, first strand: chain 'J' and resid 275 through 279 Processing sheet with id= 77, first strand: chain 'J' and resid 304 through 309 removed outlier: 3.573A pdb=" N LEU J 315 " --> pdb=" O SER J 307 " (cutoff:3.500A) Processing sheet with id= 78, first strand: chain 'J' and resid 329 through 332 removed outlier: 3.699A pdb=" N PHE J 362 " --> pdb=" O ARG J 332 " (cutoff:3.500A) Processing sheet with id= 79, first strand: chain 'J' and resid 370 through 374 Processing sheet with id= 80, first strand: chain 'J' and resid 676 through 680 removed outlier: 3.702A pdb=" N GLU J 676 " --> pdb=" O LEU J 803 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N LEU J 803 " --> pdb=" O GLU J 676 " (cutoff:3.500A) removed outlier: 5.248A pdb=" N LYS J 799 " --> pdb=" O ASP J 680 " (cutoff:3.500A) removed outlier: 4.705A pdb=" N TRP J1617 " --> pdb=" O PHE J 802 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N LEU J1618 " --> pdb=" O GLU J1613 " (cutoff:3.500A) Processing sheet with id= 81, first strand: chain 'J' and resid 723 through 726 removed outlier: 3.522A pdb=" N PHE J 723 " --> pdb=" O TRP J 697 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N VAL J 792 " --> pdb=" O MET J 655 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N SER J 653 " --> pdb=" O PHE J 794 " (cutoff:3.500A) Processing sheet with id= 82, first strand: chain 'J' and resid 756 through 760 removed outlier: 3.511A pdb=" N SER J 767 " --> pdb=" O CYS J 758 " (cutoff:3.500A) removed outlier: 5.088A pdb=" N SER J 765 " --> pdb=" O ASP J 760 " (cutoff:3.500A) Processing sheet with id= 83, first strand: chain 'J' and resid 902 through 905 removed outlier: 4.367A pdb=" N GLN J 903 " --> pdb=" O ARG J 913 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N GLY J 905 " --> pdb=" O HIS J 915 " (cutoff:3.500A) Processing sheet with id= 84, first strand: chain 'J' and resid 1099 through 1108 removed outlier: 5.331A pdb=" N GLY J1099 " --> pdb=" O MET J1168 " (cutoff:3.500A) removed outlier: 5.753A pdb=" N PHE J1105 " --> pdb=" O VAL J1162 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N ALA J1107 " --> pdb=" O ASP J1160 " (cutoff:3.500A) Processing sheet with id= 85, first strand: chain 'J' and resid 1143 through 1146 removed outlier: 3.809A pdb=" N GLN J1143 " --> pdb=" O ASP J1138 " (cutoff:3.500A) removed outlier: 6.720A pdb=" N MET J1113 " --> pdb=" O GLY J1139 " (cutoff:3.500A) removed outlier: 7.186A pdb=" N ASP J1112 " --> pdb=" O GLY J1208 " (cutoff:3.500A) removed outlier: 4.204A pdb=" N GLY J1208 " --> pdb=" O ASP J1112 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N ARG J1114 " --> pdb=" O SER J1206 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N GLY J1116 " --> pdb=" O VAL J1204 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N ALA J1090 " --> pdb=" O PRO J1203 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N PHE J1088 " --> pdb=" O CYS J1205 " (cutoff:3.500A) removed outlier: 6.329A pdb=" N ILE J1087 " --> pdb=" O SER J1252 " (cutoff:3.500A) removed outlier: 7.240A pdb=" N THR J1248 " --> pdb=" O GLU J1091 " (cutoff:3.500A) removed outlier: 6.776A pdb=" N MET J1249 " --> pdb=" O PHE J1603 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N PHE J1603 " --> pdb=" O MET J1249 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N LEU J1251 " --> pdb=" O ASN J1601 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N LYS J1253 " --> pdb=" O MET J1599 " (cutoff:3.500A) removed outlier: 4.817A pdb=" N MET J1599 " --> pdb=" O LYS J1253 " (cutoff:3.500A) Processing sheet with id= 86, first strand: chain 'J' and resid 1267 through 1274 removed outlier: 5.143A pdb=" N HIS J1267 " --> pdb=" O GLN J1293 " (cutoff:3.500A) removed outlier: 4.413A pdb=" N GLN J1293 " --> pdb=" O HIS J1267 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N GLU J1269 " --> pdb=" O GLY J1291 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N GLY J1291 " --> pdb=" O GLU J1269 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N THR J1271 " --> pdb=" O SER J1289 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ILE J1273 " --> pdb=" O GLN J1287 " (cutoff:3.500A) removed outlier: 3.613A pdb=" N GLN J1287 " --> pdb=" O ILE J1273 " (cutoff:3.500A) Processing sheet with id= 87, first strand: chain 'J' and resid 1307 through 1310 removed outlier: 6.616A pdb=" N THR J1537 " --> pdb=" O CYS J1310 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N ALA J1545 " --> pdb=" O MET J1300 " (cutoff:3.500A) removed outlier: 5.313A pdb=" N PHE J1301 " --> pdb=" O LEU J1595 " (cutoff:3.500A) removed outlier: 7.497A pdb=" N LEU J1591 " --> pdb=" O SER J1305 " (cutoff:3.500A) Processing sheet with id= 88, first strand: chain 'J' and resid 1466 through 1470 removed outlier: 7.081A pdb=" N VAL J1467 " --> pdb=" O ILE J1480 " (cutoff:3.500A) removed outlier: 4.990A pdb=" N LEU J1469 " --> pdb=" O GLU J1478 " (cutoff:3.500A) removed outlier: 5.128A pdb=" N GLU J1478 " --> pdb=" O LEU J1469 " (cutoff:3.500A) Processing sheet with id= 89, first strand: chain 'J' and resid 1486 through 1490 No H-bonds generated for sheet with id= 89 Processing sheet with id= 90, first strand: chain 'J' and resid 1516 through 1521 removed outlier: 4.842A pdb=" N GLU J1506 " --> pdb=" O VAL J1430 " (cutoff:3.500A) removed outlier: 3.899A pdb=" N VAL J1430 " --> pdb=" O GLU J1506 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N GLY J1508 " --> pdb=" O TYR J1428 " (cutoff:3.500A) removed outlier: 4.228A pdb=" N TYR J1428 " --> pdb=" O GLY J1508 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N TYR J1426 " --> pdb=" O VAL J1510 " (cutoff:3.500A) removed outlier: 6.958A pdb=" N SER J1429 " --> pdb=" O GLU J1556 " (cutoff:3.500A) removed outlier: 4.288A pdb=" N ARG J1431 " --> pdb=" O GLN J1554 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N GLN J1554 " --> pdb=" O ARG J1431 " (cutoff:3.500A) Processing sheet with id= 91, first strand: chain 'J' and resid 4133 through 4140 removed outlier: 5.262A pdb=" N PHE J4133 " --> pdb=" O ILE J4153 " (cutoff:3.500A) Processing sheet with id= 92, first strand: chain 'J' and resid 1441 through 1446 removed outlier: 3.528A pdb=" N PHE J1544 " --> pdb=" O TRP J1442 " (cutoff:3.500A) Processing sheet with id= 93, first strand: chain 'B' and resid 2 through 7 removed outlier: 3.588A pdb=" N GLU B 3 " --> pdb=" O THR B 75 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N GLU B 5 " --> pdb=" O LYS B 73 " (cutoff:3.500A) removed outlier: 6.696A pdb=" N ARG B 71 " --> pdb=" O ILE B 7 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N LEU B 97 " --> pdb=" O CYS B 76 " (cutoff:3.500A) removed outlier: 6.856A pdb=" N VAL B 23 " --> pdb=" O LEU B 104 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N PHE B 48 " --> pdb=" O CYS B 22 " (cutoff:3.500A) Processing sheet with id= 94, first strand: chain 'E' and resid 2 through 7 removed outlier: 3.588A pdb=" N GLU E 3 " --> pdb=" O THR E 75 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N GLU E 5 " --> pdb=" O LYS E 73 " (cutoff:3.500A) removed outlier: 6.696A pdb=" N ARG E 71 " --> pdb=" O ILE E 7 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N LEU E 97 " --> pdb=" O CYS E 76 " (cutoff:3.500A) removed outlier: 6.857A pdb=" N VAL E 23 " --> pdb=" O LEU E 104 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N PHE E 48 " --> pdb=" O CYS E 22 " (cutoff:3.500A) Processing sheet with id= 95, first strand: chain 'H' and resid 2 through 7 removed outlier: 3.587A pdb=" N GLU H 3 " --> pdb=" O THR H 75 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N GLU H 5 " --> pdb=" O LYS H 73 " (cutoff:3.500A) removed outlier: 6.697A pdb=" N ARG H 71 " --> pdb=" O ILE H 7 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N LEU H 97 " --> pdb=" O CYS H 76 " (cutoff:3.500A) removed outlier: 6.857A pdb=" N VAL H 23 " --> pdb=" O LEU H 104 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N PHE H 48 " --> pdb=" O CYS H 22 " (cutoff:3.500A) Processing sheet with id= 96, first strand: chain 'K' and resid 2 through 7 removed outlier: 3.588A pdb=" N GLU K 3 " --> pdb=" O THR K 75 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N GLU K 5 " --> pdb=" O LYS K 73 " (cutoff:3.500A) removed outlier: 6.696A pdb=" N ARG K 71 " --> pdb=" O ILE K 7 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N LEU K 97 " --> pdb=" O CYS K 76 " (cutoff:3.500A) removed outlier: 6.857A pdb=" N VAL K 23 " --> pdb=" O LEU K 104 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N PHE K 48 " --> pdb=" O CYS K 22 " (cutoff:3.500A) 3880 hydrogen bonds defined for protein. 11568 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 0 hydrogen bonds 0 hydrogen bond angles 0 basepair planarities 0 basepair parallelities 0 stacking parallelities Total time for adding SS restraints: 59.71 Time building geometry restraints manager: 34.04 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.18 - 1.31: 18912 1.31 - 1.44: 29964 1.44 - 1.57: 64264 1.57 - 1.70: 36 1.70 - 1.83: 1080 Bond restraints: 114256 Sorted by residual: bond pdb=" C5 ATP A6002 " pdb=" N7 ATP A6002 " ideal model delta sigma weight residual 1.387 1.320 0.067 1.00e-02 1.00e+04 4.44e+01 bond pdb=" C5 ATP D6002 " pdb=" N7 ATP D6002 " ideal model delta sigma weight residual 1.387 1.320 0.067 1.00e-02 1.00e+04 4.44e+01 bond pdb=" C5 ATP J6002 " pdb=" N7 ATP J6002 " ideal model delta sigma weight residual 1.387 1.320 0.067 1.00e-02 1.00e+04 4.44e+01 bond pdb=" C5 ATP G6002 " pdb=" N7 ATP G6002 " ideal model delta sigma weight residual 1.387 1.320 0.067 1.00e-02 1.00e+04 4.44e+01 bond pdb=" C4 ATP A6002 " pdb=" C5 ATP A6002 " ideal model delta sigma weight residual 1.388 1.452 -0.064 1.00e-02 1.00e+04 4.10e+01 ... (remaining 114251 not shown) Histogram of bond angle deviations from ideal: 96.37 - 105.03: 1873 105.03 - 113.69: 64090 113.69 - 122.34: 70762 122.34 - 131.00: 17189 131.00 - 139.66: 590 Bond angle restraints: 154504 Sorted by residual: angle pdb=" PB ATP A6002 " pdb=" O3B ATP A6002 " pdb=" PG ATP A6002 " ideal model delta sigma weight residual 139.87 120.60 19.27 1.00e+00 1.00e+00 3.71e+02 angle pdb=" PB ATP J6002 " pdb=" O3B ATP J6002 " pdb=" PG ATP J6002 " ideal model delta sigma weight residual 139.87 120.60 19.27 1.00e+00 1.00e+00 3.71e+02 angle pdb=" PB ATP D6002 " pdb=" O3B ATP D6002 " pdb=" PG ATP D6002 " ideal model delta sigma weight residual 139.87 120.61 19.26 1.00e+00 1.00e+00 3.71e+02 angle pdb=" PB ATP G6002 " pdb=" O3B ATP G6002 " pdb=" PG ATP G6002 " ideal model delta sigma weight residual 139.87 120.63 19.24 1.00e+00 1.00e+00 3.70e+02 angle pdb=" PA ATP G6002 " pdb=" O3A ATP G6002 " pdb=" PB ATP G6002 " ideal model delta sigma weight residual 136.83 119.94 16.89 1.00e+00 1.00e+00 2.85e+02 ... (remaining 154499 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 17.90: 59118 17.90 - 35.79: 7318 35.79 - 53.69: 1387 53.69 - 71.58: 260 71.58 - 89.48: 111 Dihedral angle restraints: 68194 sinusoidal: 25850 harmonic: 42344 Sorted by residual: dihedral pdb=" CA GLU D1847 " pdb=" C GLU D1847 " pdb=" N PRO D1848 " pdb=" CA PRO D1848 " ideal model delta harmonic sigma weight residual -180.00 -112.84 -67.16 0 5.00e+00 4.00e-02 1.80e+02 dihedral pdb=" CA GLU G1847 " pdb=" C GLU G1847 " pdb=" N PRO G1848 " pdb=" CA PRO G1848 " ideal model delta harmonic sigma weight residual -180.00 -112.85 -67.15 0 5.00e+00 4.00e-02 1.80e+02 dihedral pdb=" CA GLU A1847 " pdb=" C GLU A1847 " pdb=" N PRO A1848 " pdb=" CA PRO A1848 " ideal model delta harmonic sigma weight residual -180.00 -112.85 -67.15 0 5.00e+00 4.00e-02 1.80e+02 ... (remaining 68191 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.080: 14878 0.080 - 0.160: 2317 0.160 - 0.241: 181 0.241 - 0.321: 20 0.321 - 0.401: 8 Chirality restraints: 17404 Sorted by residual: chirality pdb=" CB THR A 687 " pdb=" CA THR A 687 " pdb=" OG1 THR A 687 " pdb=" CG2 THR A 687 " both_signs ideal model delta sigma weight residual False 2.55 2.15 0.40 2.00e-01 2.50e+01 4.02e+00 chirality pdb=" CB THR J 687 " pdb=" CA THR J 687 " pdb=" OG1 THR J 687 " pdb=" CG2 THR J 687 " both_signs ideal model delta sigma weight residual False 2.55 2.15 0.40 2.00e-01 2.50e+01 4.02e+00 chirality pdb=" CB THR D 687 " pdb=" CA THR D 687 " pdb=" OG1 THR D 687 " pdb=" CG2 THR D 687 " both_signs ideal model delta sigma weight residual False 2.55 2.15 0.40 2.00e-01 2.50e+01 4.01e+00 ... (remaining 17401 not shown) Planarity restraints: 19860 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" CA VAL D 686 " -0.018 2.00e-02 2.50e+03 3.74e-02 1.40e+01 pdb=" C VAL D 686 " 0.065 2.00e-02 2.50e+03 pdb=" O VAL D 686 " -0.025 2.00e-02 2.50e+03 pdb=" N THR D 687 " -0.022 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" CA VAL A 686 " -0.018 2.00e-02 2.50e+03 3.73e-02 1.39e+01 pdb=" C VAL A 686 " 0.065 2.00e-02 2.50e+03 pdb=" O VAL A 686 " -0.025 2.00e-02 2.50e+03 pdb=" N THR A 687 " -0.022 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" CA VAL J 686 " -0.018 2.00e-02 2.50e+03 3.73e-02 1.39e+01 pdb=" C VAL J 686 " 0.065 2.00e-02 2.50e+03 pdb=" O VAL J 686 " -0.025 2.00e-02 2.50e+03 pdb=" N THR J 687 " -0.022 2.00e-02 2.50e+03 ... (remaining 19857 not shown) Histogram of nonbonded interaction distances: 2.22 - 2.76: 22064 2.76 - 3.29: 99390 3.29 - 3.83: 178126 3.83 - 4.36: 206635 4.36 - 4.90: 347166 Nonbonded interactions: 853381 Sorted by model distance: nonbonded pdb=" ND2 ASN D4788 " pdb=" CD2 PHE G4738 " model vdw 2.225 3.420 nonbonded pdb=" O SER A1930 " pdb=" OG SER A1930 " model vdw 2.235 2.440 nonbonded pdb=" O SER J1930 " pdb=" OG SER J1930 " model vdw 2.235 2.440 nonbonded pdb=" O SER D1930 " pdb=" OG SER D1930 " model vdw 2.235 2.440 nonbonded pdb=" O SER G1930 " pdb=" OG SER G1930 " model vdw 2.235 2.440 ... (remaining 853376 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model Found NCS groups: ncs_group { reference = chain 'A' selection = chain 'D' selection = chain 'G' selection = chain 'J' } ncs_group { reference = chain 'B' selection = chain 'E' selection = chain 'H' selection = chain 'K' } ncs_group { reference = chain 'C' selection = chain 'F' selection = chain 'I' selection = chain 'L' } Set up NCS constraints No NCS constraints will be used in refinement. Set refine NCS operators Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=0.99 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as group one per residue Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 2.610 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.000 Assert all atoms have isotropic ADPs: 0.000 Construct map_model_manager: 0.070 Extract box with map and model: 17.190 Check model and map are aligned: 1.210 Set scattering table: 0.750 Process input model: 265.380 Find NCS groups from input model: 5.370 Set up NCS constraints: 0.770 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.000 Extract rigid body selections: 0.000 Check and reset occupancies: 0.020 Load rotamer database and sin/cos tables:2.200 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 295.570 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7923 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.010 0.105 114256 Z= 0.615 Angle : 1.076 19.270 154504 Z= 0.590 Chirality : 0.059 0.401 17404 Planarity : 0.007 0.089 19860 Dihedral : 16.411 89.479 40722 Min Nonbonded Distance : 2.225 Molprobity Statistics. All-atom Clashscore : 8.77 Ramachandran Plot: Outliers : 0.33 % Allowed : 12.42 % Favored : 87.25 % Rotamer: Outliers : 0.90 % Allowed : 14.37 % Favored : 84.74 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 4.00 % Twisted General : 0.35 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -5.87 (0.05), residues: 14148 helix: -4.45 (0.03), residues: 6036 sheet: -2.74 (0.13), residues: 1284 loop : -3.57 (0.06), residues: 6828 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.014 0.002 TRP J4646 HIS 0.014 0.002 HIS D1587 PHE 0.039 0.003 PHE J3918 TYR 0.050 0.003 TYR G4645 ARG 0.009 0.001 ARG J4823 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 28296 Ramachandran restraints generated. 14148 Oldfield, 0 Emsley, 14148 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 28296 Ramachandran restraints generated. 14148 Oldfield, 0 Emsley, 14148 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 1369 residues out of total 12860 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 109 poor density : 1260 time to evaluate : 9.282 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash Traceback (most recent call last): File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/build/../modules/phenix/phenix/command_line/real_space_refine.py", line 8, in run_program(real_space_refine.Program) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/iotbx/cli_parser.py", line 931, in run_program task.run() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/programs/real_space_refine.py", line 191, in run log = self.logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/rsr/wrappers.py", line 58, in __init__ log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 294, in __init__ self.caller(self.optimize_sidechains) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 312, in caller func() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 600, in optimize_sidechains log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 83, in __init__ rotatable_hd = self.rotatable_hd) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 180, in run_one pdb_hierarchy = self.run_one_one(args=args) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 131, in run_one_one log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 99, in __init__ self.loop(function = self.one_residue_iteration) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 209, in loop function(residue = residue) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 196, in one_residue_iteration log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 172, in __init__ self.fit_proline() File "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 217, in fit_proline for rotamer, sites_cart in rotamer_iterator: TypeError: 'NoneType' object is not iterable