phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6l53_0836/05_2022/6l53_0836.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6l53_0836/05_2022/6l53_0836.map refinement.macro_cycles=10 scattering_table=electron resolution=3.63 write_initial_geo_file=False >& 6l53.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6l53_0836/05_2022/6l53_0836.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6l53_0836/05_2022/6l53_0836.map 3.63
Refinement ran but no refined model file.