phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6lni_0931/11_2022/6lni_0931.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6lni_0931/11_2022/6lni_0931.map refinement.macro_cycles=10 scattering_table=electron resolution=2.702 write_initial_geo_file=False >& 6lni.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6lni_0931/11_2022/6lni_0931.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6lni_0931/11_2022/6lni_0931.map 2.702
Refinement ran but no refined model file.