phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6opc_20149/05_2022/6opc_20149_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6opc_20149/05_2022/6opc_20149.map refinement.macro_cycles=10 scattering_table=electron resolution=3.7 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6opc_20149/05_2022/6opc_20149_ligands.cif >& 6opc.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6opc_20149/05_2022/6opc_20149.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6opc_20149/05_2022/6opc_20149.map 3.7
Refinement ran but no refined model file.