phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6qc4_4496/05_2023/6qc4_4496_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6qc4_4496/05_2023/6qc4_4496.map refinement.macro_cycles=10 scattering_table=electron resolution=4.6 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6qc4_4496/05_2023/6qc4_4496_ligands.cif >& 6qc4.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6qc4_4496/05_2023/6qc4_4496.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6qc4_4496/05_2023/6qc4_4496.map 4.6
Refinement ran but no refined model file.