phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6r91_4765/10_2023/6r91_4765_trim_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6r91_4765/10_2023/6r91_4765.map refinement.macro_cycles=10 scattering_table=electron resolution=4.1 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6r91_4765/10_2023/6r91_4765_trim_ligands.cif >& 6r91.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6r91_4765/10_2023/6r91_4765.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6r91_4765/10_2023/6r91_4765.map 4.1
Refinement ran but no refined model file.