phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6th6_10503/12_2021/6th6_10503_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6th6_10503/12_2021/6th6_10503.map refinement.macro_cycles=10 scattering_table=electron resolution=2.55 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6th6_10503/12_2021/6th6_10503_ligands.cif >& 6th6.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6th6_10503/12_2021/6th6_10503.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6th6_10503/12_2021/6th6_10503.map 2.55
Refinement ran but no refined model file.