phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6tm2_10517/12_2021/6tm2_10517_neut.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6tm2_10517/12_2021/6tm2_10517.map refinement.macro_cycles=10 scattering_table=electron resolution=2.95 write_initial_geo_file=False >& 6tm2.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6tm2_10517/12_2021/6tm2_10517.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6tm2_10517/12_2021/6tm2_10517.map 2.95
Refinement ran but no refined model file.