phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6tz5_20589/12_2022/6tz5_20589_neut.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6tz5_20589/12_2022/6tz5_20589.map refinement.macro_cycles=10 scattering_table=electron resolution=3.1 write_initial_geo_file=False >& 6tz5.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6tz5_20589/12_2022/6tz5_20589.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6tz5_20589/12_2022/6tz5_20589.map 3.1
Refinement ran but no refined model file.