phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6u2k_20621/04_2023/6u2k_20621_neut.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6u2k_20621/04_2023/6u2k_20621.map refinement.macro_cycles=10 scattering_table=electron resolution=2.93 write_initial_geo_file=False >& 6u2k.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6u2k_20621/04_2023/6u2k_20621.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6u2k_20621/04_2023/6u2k_20621.map 2.93
Refinement ran but no refined model file.