phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6u59_20642/05_2023/6u59_20642.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6u59_20642/05_2023/6u59_20642.map refinement.macro_cycles=10 scattering_table=electron resolution=3.86 write_initial_geo_file=False >& 6u59.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6u59_20642/05_2023/6u59_20642.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6u59_20642/05_2023/6u59_20642.map 3.86
Refinement ran but no refined model file.