phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vk9_21225/03_2023/6vk9_21225.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vk9_21225/03_2023/6vk9_21225.map refinement.macro_cycles=10 scattering_table=electron resolution=3.8 write_initial_geo_file=False >& 6vk9.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vk9_21225/03_2023/6vk9_21225.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vk9_21225/03_2023/6vk9_21225.map 3.8
Refinement ran but no refined model file.