phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vl6_21231/05_2022/6vl6_21231.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vl6_21231/05_2022/6vl6_21231.map refinement.macro_cycles=10 scattering_table=electron resolution=4.6 write_initial_geo_file=False >& 6vl6.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vl6_21231/05_2022/6vl6_21231.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vl6_21231/05_2022/6vl6_21231.map 4.6
Refinement ran but no refined model file.