phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vu8_21388/11_2022/6vu8_21388_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vu8_21388/11_2022/6vu8_21388.map refinement.macro_cycles=10 scattering_table=electron resolution=4.14 write_initial_geo_file=False >& 6vu8.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vu8_21388/11_2022/6vu8_21388.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vu8_21388/11_2022/6vu8_21388.map 4.14
Refinement ran but no refined model file.