phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vy2_21456/05_2022/6vy2_21456.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vy2_21456/05_2022/6vy2_21456.map refinement.macro_cycles=10 scattering_table=electron resolution=4.86 write_initial_geo_file=False >& 6vy2.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vy2_21456/05_2022/6vy2_21456.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6vy2_21456/05_2022/6vy2_21456.map 4.86
Refinement ran but no refined model file.