phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xi8_22191/11_2022/6xi8_22191_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xi8_22191/11_2022/6xi8_22191.map refinement.macro_cycles=10 scattering_table=electron resolution=3.64 write_initial_geo_file=False >& 6xi8.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xi8_22191/11_2022/6xi8_22191.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xi8_22191/11_2022/6xi8_22191.map 3.64
Refinement ran but no refined model file.