phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xlh_22244/04_2022/6xlh_22244_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xlh_22244/04_2022/6xlh_22244.map refinement.macro_cycles=10 scattering_table=electron resolution=2.83 write_initial_geo_file=False >& 6xlh.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xlh_22244/04_2022/6xlh_22244.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xlh_22244/04_2022/6xlh_22244.map 2.83
Refinement ran but no refined model file.