phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xly_22252/11_2022/6xly_22252.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xly_22252/11_2022/6xly_22252.map refinement.macro_cycles=10 scattering_table=electron resolution=3.1 write_initial_geo_file=False >& 6xly.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xly_22252/11_2022/6xly_22252.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xly_22252/11_2022/6xly_22252.map 3.1
Refinement ran but no refined model file.