phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xpe_22286/11_2022/6xpe_22286.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xpe_22286/11_2022/6xpe_22286.map refinement.macro_cycles=10 scattering_table=electron resolution=4.1 write_initial_geo_file=False >& 6xpe.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xpe_22286/11_2022/6xpe_22286.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xpe_22286/11_2022/6xpe_22286.map 4.1
Refinement ran but no refined model file.