phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xyq_10652/11_2022/6xyq_10652.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xyq_10652/11_2022/6xyq_10652.map refinement.macro_cycles=10 scattering_table=electron resolution=3.09 write_initial_geo_file=False >& 6xyq.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xyq_10652/11_2022/6xyq_10652.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6xyq_10652/11_2022/6xyq_10652.map 3.09
Refinement ran but no refined model file.