phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6y9x_10740/03_2023/6y9x_10740.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6y9x_10740/03_2023/6y9x_10740.map refinement.macro_cycles=10 scattering_table=electron resolution=4.4 write_initial_geo_file=False >& 6y9x.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6y9x_10740/03_2023/6y9x_10740.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6y9x_10740/03_2023/6y9x_10740.map 4.4
Refinement ran but no refined model file.