INPUT
  
    Reading model from /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ymx_10847/12_2022/6ymx_10847.pdb
    Reading option "hydrogens=False" from command line
    Writing effective parameters to 6ymx_10847.eff

    Ligand restraint generation using eLBOW, phenix.elbow
    

  Build ligand and use chemical components : CN5

  Attempting to download Chemical Components file for CUA
  Running eLBOW on CUA.cif
Sorry: 
  eLBOW not suitable for metal clusters unless the --final_geometry option
  is used.