phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ymy_10848/05_2022/6ymy_10848.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ymy_10848/05_2022/6ymy_10848.map refinement.macro_cycles=10 scattering_table=electron resolution=3.41 write_initial_geo_file=False >& 6ymy.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ymy_10848/05_2022/6ymy_10848.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ymy_10848/05_2022/6ymy_10848.map 3.41
Refinement ran but no refined model file.