phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ysn_10903/03_2023/6ysn_10903_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ysn_10903/03_2023/6ysn_10903.map refinement.macro_cycles=10 scattering_table=electron resolution=3.0 write_initial_geo_file=False >& 6ysn.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ysn_10903/03_2023/6ysn_10903.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6ysn_10903/03_2023/6ysn_10903.map 3.0
Refinement ran but no refined model file.