phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6yv1_10940/11_2022/6yv1_10940.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6yv1_10940/11_2022/6yv1_10940.map refinement.macro_cycles=10 scattering_table=electron resolution=3.4 write_initial_geo_file=False >& 6yv1.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6yv1_10940/11_2022/6yv1_10940.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6yv1_10940/11_2022/6yv1_10940.map 3.4
Refinement ran but no refined model file.