phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6zrf_11380/12_2021/6zrf_11380_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6zrf_11380/12_2021/6zrf_11380.map refinement.macro_cycles=10 scattering_table=electron resolution=3.6 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6zrf_11380/12_2021/6zrf_11380_ligands.cif >& 6zrf.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6zrf_11380/12_2021/6zrf_11380.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6zrf_11380/12_2021/6zrf_11380.map 3.6
Refinement ran but no refined model file.