phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7a5v_11657/04_2022/7a5v_11657_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7a5v_11657/04_2022/7a5v_11657.map refinement.macro_cycles=10 scattering_table=electron resolution=1.7 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7a5v_11657/04_2022/7a5v_11657_ligands.cif >& 7a5v.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7a5v_11657/04_2022/7a5v_11657.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7a5v_11657/04_2022/7a5v_11657.map 1.7
Refinement ran but no refined model file.