INPUT
  
    Reading model from /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7ahq_11790/12_2022/7ahq_11790.pdb
    Reading option "hydrogens=False" from command line
    Writing effective parameters to 7ahq_11790.eff

    Ligand restraint generation using eLBOW, phenix.elbow
    

  Build ligand and use monomer library to name atoms : ADP
  Using monomer library entry ADP as template

  Attempting to download Chemical Components file for RLZ
  Running eLBOW on RLZ.cif
 Processing a loop

 Suspicious bonds
    Bond between
      Atom  N29(58) xyz:( 4.765,  0.670, -3.448) and
      Atom  C28(17) xyz:( 1.072, -1.417, -2.182) should be  1.45, not    4.43
    Bond between
      Atom  N24(57) xyz:( 0.608,  0.788, -3.305) and
      Atom  C23(14) xyz:( 4.601, -1.395, -1.159) should be  1.45, not    5.03
    Bond between
      Atom  C23(14) xyz:( 4.601, -1.395, -1.159) and
      Atom  C22(13) xyz:( 0.357, -2.129, -0.556) should be  1.53, not    4.35


RLZ   N57     N56   double        1.077 0.020     1.077
RLZ   N57     C58   single        1.395 0.020     1.395
RLZ   N56     C51   single        1.419 0.020     1.419
RLZ   C52     C51   aromatic      1.300 0.020     1.300
RLZ   C52     C53   aromatic      1.403 0.020     1.403
RLZ   C59     C58   aromatic      1.540 0.020     1.540
RLZ   C59     C60   aromatic      1.311 0.020     1.311
RLZ   C58     C63   aromatic      1.368 0.020     1.368
RLZ   C67     O66   single        1.501 0.020     1.501
RLZ   C51     C50   aromatic      1.350 0.020     1.350
RLZ   C53     C54   aromatic      1.338 0.020     1.338
RLZ   O66     C60   single        1.354 0.020     1.354
RLZ   C60     C61   aromatic      1.459 0.020     1.459
RLZ   C63     C62   aromatic      1.407 0.020     1.407
RLZ   C50     N49   single        1.626 0.020     1.626
RLZ   C50     C55   aromatic      1.415 0.020     1.415
RLZ   C61     C62   aromatic      1.483 0.020     1.483
RLZ   C61     O64   single        1.381 0.020     1.381
RLZ   C62     O68   single        1.607 0.020     1.607
RLZ   C54     C55   aromatic      1.290 0.020     1.290
RLZ   C54     O77   single        1.483 0.020     1.483
RLZ   N49     C48   single        1.467 0.020     1.467
RLZ   C65     O64   single        1.292 0.020     1.292
RLZ   C78     O77   single        1.641 0.020     1.641
RLZ   O68     C69   single        1.275 0.020     1.275
RLZ   C47     C48   single        1.614 0.020     1.614
RLZ   C47     C46   single        1.475 0.020     1.475
RLZ   C48     O70   double        0.978 0.020     0.978
RLZ   C46     C45   single        1.619 0.020     1.619
RLZ   O33     C32   double        1.285 0.020     1.285
RLZ   C34     N29   single        1.773 0.020     1.773
RLZ   O13     C11   double        1.082 0.020     1.082
RLZ   C6      C5    aromatic      1.322 0.020     1.322
RLZ   C6      C1    aromatic      1.453 0.020     1.453
RLZ   C32     C31   single        0.639 0.020     0.639
RLZ   C32     N8    single        2.816 0.020     2.816
RLZ   C11     C10   single        3.157 0.020     3.157
1.527126
Sorry: Bond length too long : 3.16