Starting phenix.real_space_refine on Tue Apr 16 03:51:33 2024 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7aih_11796/04_2024/7aih_11796_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7aih_11796/04_2024/7aih_11796.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=3.6 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7aih_11796/04_2024/7aih_11796.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7aih_11796/04_2024/7aih_11796.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7aih_11796/04_2024/7aih_11796_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7aih_11796/04_2024/7aih_11796_updated.pdb" } resolution = 3.6 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= -0.000 sd= 0.014 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 6 Type Number sf(0) Gaussians Zn 6 6.06 5 P 1089 5.49 5 S 557 5.16 5 C 86759 2.51 5 N 25939 2.21 5 O 29317 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "A ARG 36": "NH1" <-> "NH2" Residue "A ARG 99": "NH1" <-> "NH2" Residue "A PHE 104": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 122": "OE1" <-> "OE2" Residue "A ASP 325": "OD1" <-> "OD2" Residue "A ARG 333": "NH1" <-> "NH2" Residue "A GLU 371": "OE1" <-> "OE2" Residue "A GLU 386": "OE1" <-> "OE2" Residue "B GLU 69": "OE1" <-> "OE2" Residue "B ARG 77": "NH1" <-> "NH2" Residue "B GLU 117": "OE1" <-> "OE2" Residue "B GLU 119": "OE1" <-> "OE2" Residue "B GLU 120": "OE1" <-> "OE2" Residue "B ARG 293": "NH1" <-> "NH2" Residue "B GLU 330": "OE1" <-> "OE2" Residue "B GLU 339": "OE1" <-> "OE2" Residue "B ARG 359": "NH1" <-> "NH2" Residue "B GLU 407": "OE1" <-> "OE2" Residue "B GLU 409": "OE1" <-> "OE2" Residue "B ARG 423": "NH1" <-> "NH2" Residue "B ARG 428": "NH1" <-> "NH2" Residue "C GLU 78": "OE1" <-> "OE2" Residue "C GLU 104": "OE1" <-> "OE2" Residue "C ARG 126": "NH1" <-> "NH2" Residue "C GLU 147": "OE1" <-> "OE2" Residue "C GLU 176": "OE1" <-> "OE2" Residue "C GLU 177": "OE1" <-> "OE2" Residue "C GLU 190": "OE1" <-> "OE2" Residue "D ARG 33": "NH1" <-> "NH2" Residue "D ARG 36": "NH1" <-> "NH2" Residue "D ARG 40": "NH1" <-> "NH2" Residue "D ARG 88": "NH1" <-> "NH2" Residue "D ARG 93": "NH1" <-> "NH2" Residue "D ARG 123": "NH1" <-> "NH2" Residue "D ARG 136": "NH1" <-> "NH2" Residue "E GLU 20": "OE1" <-> "OE2" Residue "E GLU 71": "OE1" <-> "OE2" Residue "E ARG 115": "NH1" <-> "NH2" Residue "E GLU 135": "OE1" <-> "OE2" Residue "E GLU 174": "OE1" <-> "OE2" Residue "E GLU 232": "OE1" <-> "OE2" Residue "E GLU 256": "OE1" <-> "OE2" Residue "E GLU 257": "OE1" <-> "OE2" Residue "E GLU 304": "OE1" <-> "OE2" Residue "E ARG 323": "NH1" <-> "NH2" Residue "F GLU 9": "OE1" <-> "OE2" Residue "F GLU 106": "OE1" <-> "OE2" Residue "F GLU 123": "OE1" <-> "OE2" Residue "F GLU 137": "OE1" <-> "OE2" Residue "F ARG 154": "NH1" <-> "NH2" Residue "G TYR 11": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 135": "NH1" <-> "NH2" Residue "G GLU 144": "OE1" <-> "OE2" Residue "G ARG 150": "NH1" <-> "NH2" Residue "G ARG 174": "NH1" <-> "NH2" Residue "G GLU 210": "OE1" <-> "OE2" Residue "G GLU 224": "OE1" <-> "OE2" Residue "G GLU 247": "OE1" <-> "OE2" Residue "G GLU 270": "OE1" <-> "OE2" Residue "G GLU 278": "OE1" <-> "OE2" Residue "G GLU 281": "OE1" <-> "OE2" Residue "G ARG 293": "NH1" <-> "NH2" Residue "G GLU 303": "OE1" <-> "OE2" Residue "G ARG 307": "NH1" <-> "NH2" Residue "G ARG 315": "NH1" <-> "NH2" Residue "G ARG 322": "NH1" <-> "NH2" Residue "G ARG 368": "NH1" <-> "NH2" Residue "G ARG 373": "NH1" <-> "NH2" Residue "H ARG 24": "NH1" <-> "NH2" Residue "H ARG 30": "NH1" <-> "NH2" Residue "H GLU 89": "OE1" <-> "OE2" Residue "H ARG 101": "NH1" <-> "NH2" Residue "H GLU 139": "OE1" <-> "OE2" Residue "H ARG 158": "NH1" <-> "NH2" Residue "I ARG 137": "NH1" <-> "NH2" Residue "I GLU 220": "OE1" <-> "OE2" Residue "I GLU 261": "OE1" <-> "OE2" Residue "J GLU 36": "OE1" <-> "OE2" Residue "J GLU 63": "OE1" <-> "OE2" Residue "J ARG 67": "NH1" <-> "NH2" Residue "J GLU 97": "OE1" <-> "OE2" Residue "J GLU 123": "OE1" <-> "OE2" Residue "K TYR 11": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K GLU 16": "OE1" <-> "OE2" Residue "K ARG 48": "NH1" <-> "NH2" Residue "K GLU 52": "OE1" <-> "OE2" Residue "K GLU 58": "OE1" <-> "OE2" Residue "K ARG 150": "NH1" <-> "NH2" Residue "K GLU 153": "OE1" <-> "OE2" Residue "K ARG 164": "NH1" <-> "NH2" Residue "K ARG 170": "NH1" <-> "NH2" Residue "K GLU 171": "OE1" <-> "OE2" Residue "K ARG 174": "NH1" <-> "NH2" Residue "L PHE 22": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "L GLU 84": "OE1" <-> "OE2" Residue "L GLU 85": "OE1" <-> "OE2" Residue "L ARG 103": "NH1" <-> "NH2" Residue "L ARG 119": "NH1" <-> "NH2" Residue "L GLU 124": "OE1" <-> "OE2" Residue "L ARG 146": "NH1" <-> "NH2" Residue "M ARG 13": "NH1" <-> "NH2" Residue "M ARG 40": "NH1" <-> "NH2" Residue "M ARG 68": "NH1" <-> "NH2" Residue "M GLU 101": "OE1" <-> "OE2" Residue "M GLU 119": "OE1" <-> "OE2" Residue "M GLU 149": "OE1" <-> "OE2" Residue "M ARG 218": "NH1" <-> "NH2" Residue "N ARG 50": "NH1" <-> "NH2" Residue "N ARG 66": "NH1" <-> "NH2" Residue "N ARG 78": "NH1" <-> "NH2" Residue "N GLU 89": "OE1" <-> "OE2" Residue "N ARG 114": "NH1" <-> "NH2" Residue "N GLU 118": "OE1" <-> "OE2" Residue "N ARG 125": "NH1" <-> "NH2" Residue "N ARG 133": "NH1" <-> "NH2" Residue "N GLU 150": "OE1" <-> "OE2" Residue "N ARG 196": "NH1" <-> "NH2" Residue "N GLU 208": "OE1" <-> "OE2" Residue "N GLU 211": "OE1" <-> "OE2" Residue "O ARG 33": "NH1" <-> "NH2" Residue "O ARG 35": "NH1" <-> "NH2" Residue "O GLU 41": "OE1" <-> "OE2" Residue "O GLU 85": "OE1" <-> "OE2" Residue "O GLU 92": "OE1" <-> "OE2" Residue "O ARG 121": "NH1" <-> "NH2" Residue "O GLU 165": "OE1" <-> "OE2" Residue "O GLU 182": "OE1" <-> "OE2" Residue "O GLU 214": "OE1" <-> "OE2" Residue "O GLU 222": "OE1" <-> "OE2" Residue "O GLU 227": "OE1" <-> "OE2" Residue "O GLU 228": "OE1" <-> "OE2" Residue "O ARG 229": "NH1" <-> "NH2" Residue "O GLU 245": "OE1" <-> "OE2" Residue "O GLU 246": "OE1" <-> "OE2" Residue "O ARG 279": "NH1" <-> "NH2" Residue "O ARG 305": "NH1" <-> "NH2" Residue "O ARG 320": "NH1" <-> "NH2" Residue "P ARG 57": "NH1" <-> "NH2" Residue "P ARG 60": "NH1" <-> "NH2" Residue "P GLU 63": "OE1" <-> "OE2" Residue "P ARG 68": "NH1" <-> "NH2" Residue "P GLU 150": "OE1" <-> "OE2" Residue "P ARG 154": "NH1" <-> "NH2" Residue "P ARG 177": "NH1" <-> "NH2" Residue "Q GLU 18": "OE1" <-> "OE2" Residue "Q ARG 21": "NH1" <-> "NH2" Residue "Q ARG 48": "NH1" <-> "NH2" Residue "Q GLU 80": "OE1" <-> "OE2" Residue "Q GLU 124": "OE1" <-> "OE2" Residue "Q GLU 129": "OE1" <-> "OE2" Residue "Q GLU 154": "OE1" <-> "OE2" Residue "Q GLU 166": "OE1" <-> "OE2" Residue "Q ARG 218": "NH1" <-> "NH2" Residue "Q ARG 223": "NH1" <-> "NH2" Residue "R ARG 40": "NH1" <-> "NH2" Residue "R ARG 41": "NH1" <-> "NH2" Residue "R ARG 70": "NH1" <-> "NH2" Residue "R GLU 74": "OE1" <-> "OE2" Residue "R GLU 89": "OE1" <-> "OE2" Residue "R GLU 92": "OE1" <-> "OE2" Residue "R GLU 104": "OE1" <-> "OE2" Residue "R GLU 108": "OE1" <-> "OE2" Residue "R ARG 111": "NH1" <-> "NH2" Residue "R ARG 147": "NH1" <-> "NH2" Residue "R ARG 148": "NH1" <-> "NH2" Residue "R ARG 199": "NH1" <-> "NH2" Residue "R ARG 200": "NH1" <-> "NH2" Residue "R GLU 204": "OE1" <-> "OE2" Residue "R ARG 238": "NH1" <-> "NH2" Residue "R ARG 272": "NH1" <-> "NH2" Residue "R ARG 277": "NH1" <-> "NH2" Residue "R ARG 288": "NH1" <-> "NH2" Residue "R ARG 310": "NH1" <-> "NH2" Residue "R GLU 327": "OE1" <-> "OE2" Residue "R ARG 333": "NH1" <-> "NH2" Residue "R ARG 385": "NH1" <-> "NH2" Residue "R ARG 438": "NH1" <-> "NH2" Residue "S GLU 283": "OE1" <-> "OE2" Residue "S ARG 309": "NH1" <-> "NH2" Residue "S ARG 331": "NH1" <-> "NH2" Residue "S ARG 360": "NH1" <-> "NH2" Residue "S GLU 382": "OE1" <-> "OE2" Residue "S ARG 383": "NH1" <-> "NH2" Residue "T ARG 50": "NH1" <-> "NH2" Residue "U GLU 57": "OE1" <-> "OE2" Residue "U ARG 60": "NH1" <-> "NH2" Residue "U ARG 89": "NH1" <-> "NH2" Residue "U ARG 100": "NH1" <-> "NH2" Residue "V GLU 15": "OE1" <-> "OE2" Residue "V GLU 30": "OE1" <-> "OE2" Residue "V GLU 46": "OE1" <-> "OE2" Residue "V ARG 104": "NH1" <-> "NH2" Residue "V ARG 144": "NH1" <-> "NH2" Residue "W GLU 74": "OE1" <-> "OE2" Residue "X ARG 45": "NH1" <-> "NH2" Residue "X ARG 47": "NH1" <-> "NH2" Residue "X ARG 49": "NH1" <-> "NH2" Residue "X ARG 52": "NH1" <-> "NH2" Residue "X GLU 61": "OE1" <-> "OE2" Residue "X GLU 88": "OE1" <-> "OE2" Residue "X ARG 136": "NH1" <-> "NH2" Residue "X GLU 139": "OE1" <-> "OE2" Residue "X GLU 152": "OE1" <-> "OE2" Residue "X ARG 278": "NH1" <-> "NH2" Residue "X ARG 295": "NH1" <-> "NH2" Residue "X ARG 361": "NH1" <-> "NH2" Residue "X ARG 398": "NH1" <-> "NH2" Residue "X ARG 402": "NH1" <-> "NH2" Residue "X GLU 427": "OE1" <-> "OE2" Residue "X GLU 441": "OE1" <-> "OE2" Residue "X GLU 443": "OE1" <-> "OE2" Residue "X ARG 452": "NH1" <-> "NH2" Residue "X GLU 454": "OE1" <-> "OE2" Residue "X ARG 492": "NH1" <-> "NH2" Residue "Y GLU 101": "OE1" <-> "OE2" Residue "Y ARG 104": "NH1" <-> "NH2" Residue "Y GLU 156": "OE1" <-> "OE2" Residue "Y ARG 161": "NH1" <-> "NH2" Residue "Y GLU 198": "OE1" <-> "OE2" Residue "Y ARG 225": "NH1" <-> "NH2" Residue "Y GLU 257": "OE1" <-> "OE2" Residue "Y ARG 260": "NH1" <-> "NH2" Residue "Y GLU 273": "OE1" <-> "OE2" Residue "Y ARG 274": "NH1" <-> "NH2" Residue "Z TYR 30": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "Z ARG 36": "NH1" <-> "NH2" Residue "Z GLU 46": "OE1" <-> "OE2" Residue "Z ARG 76": "NH1" <-> "NH2" Residue "Z ARG 80": "NH1" <-> "NH2" Residue "Z GLU 124": "OE1" <-> "OE2" Residue "Z GLU 148": "OE1" <-> "OE2" Residue "BA ARG 78": "NH1" <-> "NH2" Residue "BA ARG 80": "NH1" <-> "NH2" Residue "BA ARG 110": "NH1" <-> "NH2" Residue "BA GLU 119": "OE1" <-> "OE2" Residue "BA ARG 137": "NH1" <-> "NH2" Residue "BB ARG 33": "NH1" <-> "NH2" Residue "BB ARG 40": "NH1" <-> "NH2" Residue "BB ARG 88": "NH1" <-> "NH2" Residue "BB ARG 91": "NH1" <-> "NH2" Residue "BB GLU 105": "OE1" <-> "OE2" Residue "BB ARG 119": "NH1" <-> "NH2" Residue "Aw ARG 8": "NH1" <-> "NH2" Residue "Aw ARG 21": "NH1" <-> "NH2" Residue "Aw ARG 22": "NH1" <-> "NH2" Residue "Aw GLU 82": "OE1" <-> "OE2" Residue "Aw GLU 121": "OE1" <-> "OE2" Residue "Aw ARG 123": "NH1" <-> "NH2" Residue "Aw ARG 127": "NH1" <-> "NH2" Residue "Aw ARG 177": "NH1" <-> "NH2" Residue "Bj ARG 65": "NH1" <-> "NH2" Residue "Bj GLU 66": "OE1" <-> "OE2" Residue "Bj GLU 71": "OE1" <-> "OE2" Residue "Bj GLU 92": "OE1" <-> "OE2" Residue "Bj ARG 128": "NH1" <-> "NH2" Residue "Bj GLU 133": "OE1" <-> "OE2" Residue "Bj ARG 137": "NH1" <-> "NH2" Residue "An ARG 22": "NH1" <-> "NH2" Residue "An GLU 45": "OE1" <-> "OE2" Residue "An GLU 57": "OE1" <-> "OE2" Residue "An ARG 102": "NH1" <-> "NH2" Residue "An GLU 109": "OE1" <-> "OE2" Residue "An ARG 146": "NH1" <-> "NH2" Residue "An GLU 151": "OE1" <-> "OE2" Residue "An ARG 162": "NH1" <-> "NH2" Residue "An GLU 170": "OE1" <-> "OE2" Residue "An GLU 176": "OE1" <-> "OE2" Residue "An ARG 181": "NH1" <-> "NH2" Residue "An ARG 188": "NH1" <-> "NH2" Residue "An GLU 198": "OE1" <-> "OE2" Residue "An GLU 226": "OE1" <-> "OE2" Residue "An ARG 229": "NH1" <-> "NH2" Residue "An ARG 233": "NH1" <-> "NH2" Residue "An GLU 260": "OE1" <-> "OE2" Residue "An GLU 280": "OE1" <-> "OE2" Residue "An GLU 282": "OE1" <-> "OE2" Residue "An GLU 296": "OE1" <-> "OE2" Residue "An ARG 312": "NH1" <-> "NH2" Residue "An ARG 313": "NH1" <-> "NH2" Residue "Al GLU 65": "OE1" <-> "OE2" Residue "Al GLU 81": "OE1" <-> "OE2" Residue "Al TYR 131": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "Al GLU 141": "OE1" <-> "OE2" Residue "Al ARG 145": "NH1" <-> "NH2" Residue "Al ARG 149": "NH1" <-> "NH2" Residue "Al GLU 271": "OE1" <-> "OE2" Residue "Al GLU 272": "OE1" <-> "OE2" Residue "BI GLU 99": "OE1" <-> "OE2" Residue "BI ARG 104": "NH1" <-> "NH2" Residue "BI ARG 137": "NH1" <-> "NH2" Residue "BI ARG 147": "NH1" <-> "NH2" Residue "BI GLU 179": "OE1" <-> "OE2" Residue "BI ARG 194": "NH1" <-> "NH2" Residue "BI ARG 232": "NH1" <-> "NH2" Residue "BI ARG 257": "NH1" <-> "NH2" Residue "Az GLU 141": "OE1" <-> "OE2" Residue "At ARG 17": "NH1" <-> "NH2" Residue "At ARG 131": "NH1" <-> "NH2" Residue "At ARG 132": "NH1" <-> "NH2" Residue "At ARG 133": "NH1" <-> "NH2" Residue "At GLU 138": "OE1" <-> "OE2" Residue "At ARG 150": "NH1" <-> "NH2" Residue "At GLU 165": "OE1" <-> "OE2" Residue "At ARG 174": "NH1" <-> "NH2" Residue "BC ARG 51": "NH1" <-> "NH2" Residue "BC GLU 107": "OE1" <-> "OE2" Residue "BC ARG 128": "NH1" <-> "NH2" Residue "BC GLU 136": "OE1" <-> "OE2" Residue "BC GLU 138": "OE1" <-> "OE2" Residue "Ab ARG 11": "NH1" <-> "NH2" Residue "Ab ARG 38": "NH1" <-> "NH2" Residue "Ab ARG 72": "NH1" <-> "NH2" Residue "Ab ARG 85": "NH1" <-> "NH2" Residue "Ab ARG 165": "NH1" <-> "NH2" Residue "Ab ARG 166": "NH1" <-> "NH2" Residue "Ab GLU 172": "OE1" <-> "OE2" Residue "Ab GLU 176": "OE1" <-> "OE2" Residue "Ab ARG 206": "NH1" <-> "NH2" Residue "Ab ARG 211": "NH1" <-> "NH2" Residue "Ab ARG 246": "NH1" <-> "NH2" Residue "Ai GLU 82": "OE1" <-> "OE2" Residue "Ai ARG 120": "NH1" <-> "NH2" Residue "Ai GLU 126": "OE1" <-> "OE2" Residue "Ai GLU 140": "OE1" <-> "OE2" Residue "Ai GLU 155": "OE1" <-> "OE2" Residue "Ai ARG 323": "NH1" <-> "NH2" Residue "Ai ARG 346": "NH1" <-> "NH2" Residue "Ai GLU 361": "OE1" <-> "OE2" Residue "Ai GLU 384": "OE1" <-> "OE2" Residue "Ai ARG 430": "NH1" <-> "NH2" Residue "Ai GLU 449": "OE1" <-> "OE2" Residue "Ap ARG 20": "NH1" <-> "NH2" Residue "Ap ARG 25": "NH1" <-> "NH2" Residue "Ap GLU 33": "OE1" <-> "OE2" Residue "Ap ARG 119": "NH1" <-> "NH2" Residue "Ap GLU 131": "OE1" <-> "OE2" Residue "Ap ARG 133": "NH1" <-> "NH2" Residue "Ap ARG 139": "NH1" <-> "NH2" Residue "Ap ARG 150": "NH1" <-> "NH2" Residue "Ap ARG 165": "NH1" <-> "NH2" Residue "Ap ARG 173": "NH1" <-> "NH2" Residue "Ap ARG 195": "NH1" <-> "NH2" Residue "Ap GLU 217": "OE1" <-> "OE2" Residue "Ap ARG 222": "NH1" <-> "NH2" Residue "Au ARG 11": "NH1" <-> "NH2" Residue "Au ARG 22": "NH1" <-> "NH2" Residue "Au ARG 24": "NH1" <-> "NH2" Residue "Au ARG 62": "NH1" <-> "NH2" Residue "Au GLU 105": "OE1" <-> "OE2" Residue "Au ARG 145": "NH1" <-> "NH2" Residue "Aa ARG 18": "NH1" <-> "NH2" Residue "Aa ARG 34": "NH1" <-> "NH2" Residue "Aa ARG 38": "NH1" <-> "NH2" Residue "Aa GLU 73": "OE1" <-> "OE2" Residue "Aa ARG 75": "NH1" <-> "NH2" Residue "Aa ARG 82": "NH1" <-> "NH2" Residue "Aa ARG 121": "NH1" <-> "NH2" Residue "Aa ARG 189": "NH1" <-> "NH2" Residue "Ao ARG 31": "NH1" <-> "NH2" Residue "Ao GLU 63": "OE1" <-> "OE2" Residue "Ao GLU 118": "OE1" <-> "OE2" Residue "Ao GLU 124": "OE1" <-> "OE2" Residue "Ao ARG 157": "NH1" <-> "NH2" Residue "Ao ARG 173": "NH1" <-> "NH2" Residue "Ao ARG 174": "NH1" <-> "NH2" Residue "Ao GLU 198": "OE1" <-> "OE2" Residue "Ao ARG 202": "NH1" <-> "NH2" Residue "Ao ARG 210": "NH1" <-> "NH2" Residue "Ao GLU 227": "OE1" <-> "OE2" Residue "Ao GLU 229": "OE1" <-> "OE2" Residue "Ao ARG 238": "NH1" <-> "NH2" Residue "Ao GLU 263": "OE1" <-> "OE2" Residue "Ao ARG 276": "NH1" <-> "NH2" Residue "BM ARG 17": "NH1" <-> "NH2" Residue "BM ARG 31": "NH1" <-> "NH2" Residue "BM ARG 34": "NH1" <-> "NH2" Residue "BM ARG 46": "NH1" <-> "NH2" Residue "BM ARG 71": "NH1" <-> "NH2" Residue "BM ARG 79": "NH1" <-> "NH2" Residue "BM ARG 80": "NH1" <-> "NH2" Residue "BM ARG 89": "NH1" <-> "NH2" Residue "BM ARG 121": "NH1" <-> "NH2" Residue "BM GLU 125": "OE1" <-> "OE2" Residue "BM ARG 137": "NH1" <-> "NH2" Residue "BM ARG 140": "NH1" <-> "NH2" Residue "BM ARG 141": "NH1" <-> "NH2" Residue "BM ARG 142": "NH1" <-> "NH2" Residue "BM GLU 143": "OE1" <-> "OE2" Residue "BM ARG 160": "NH1" <-> "NH2" Residue "BM GLU 163": "OE1" <-> "OE2" Residue "BM ARG 177": "NH1" <-> "NH2" Residue "BM ARG 182": "NH1" <-> "NH2" Residue "BM GLU 183": "OE1" <-> "OE2" Residue "BM GLU 212": "OE1" <-> "OE2" Residue "BM ARG 213": "NH1" <-> "NH2" Residue "BM ARG 221": "NH1" <-> "NH2" Residue "BM ARG 237": "NH1" <-> "NH2" Residue "BM ARG 246": "NH1" <-> "NH2" Residue "BM ARG 251": "NH1" <-> "NH2" Residue "BM ARG 255": "NH1" <-> "NH2" Residue "BM ARG 263": "NH1" <-> "NH2" Residue "BM ARG 271": "NH1" <-> "NH2" Residue "BM ARG 282": "NH1" <-> "NH2" Residue "BM ARG 289": "NH1" <-> "NH2" Residue "BM ARG 323": "NH1" <-> "NH2" Residue "BM ARG 335": "NH1" <-> "NH2" Residue "BM ARG 339": "NH1" <-> "NH2" Residue "BM ARG 348": "NH1" <-> "NH2" Residue "BM ARG 389": "NH1" <-> "NH2" Residue "Ar GLU 14": "OE1" <-> "OE2" Residue "Ar GLU 18": "OE1" <-> "OE2" Residue "Ar GLU 39": "OE1" <-> "OE2" Residue "Ar ARG 44": "NH1" <-> "NH2" Residue "Ar ARG 79": "NH1" <-> "NH2" Residue "Ar GLU 82": "OE1" <-> "OE2" Residue "Ar GLU 86": "OE1" <-> "OE2" Residue "Ar PHE 90": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "Aj ARG 126": "NH1" <-> "NH2" Residue "Aj ARG 133": "NH1" <-> "NH2" Residue "Aj ARG 141": "NH1" <-> "NH2" Residue "Aj ARG 196": "NH1" <-> "NH2" Residue "Aj GLU 208": "OE1" <-> "OE2" Residue "Aj ARG 258": "NH1" <-> "NH2" Residue "Aj ARG 377": "NH1" <-> "NH2" Residue "Aj ARG 380": "NH1" <-> "NH2" Residue "Aj GLU 392": "OE1" <-> "OE2" Residue "Aj ARG 402": "NH1" <-> "NH2" Residue "Aj GLU 448": "OE1" <-> "OE2" Residue "Aj ARG 480": "NH1" <-> "NH2" Residue "Aj ARG 483": "NH1" <-> "NH2" Residue "Aj ARG 486": "NH1" <-> "NH2" Residue "BH ARG 49": "NH1" <-> "NH2" Residue "BH ARG 54": "NH1" <-> "NH2" Residue "BH ARG 154": "NH1" <-> "NH2" Residue "BH ARG 179": "NH1" <-> "NH2" Residue "BH GLU 202": "OE1" <-> "OE2" Residue "BH GLU 205": "OE1" <-> "OE2" Residue "Am ARG 97": "NH1" <-> "NH2" Residue "Am ARG 128": "NH1" <-> "NH2" Residue "Am ARG 205": "NH1" <-> "NH2" Residue "Am ARG 223": "NH1" <-> "NH2" Residue "Am ARG 273": "NH1" <-> "NH2" Residue "Am ARG 281": "NH1" <-> "NH2" Residue "Am ARG 311": "NH1" <-> "NH2" Residue "Am ASP 313": "OD1" <-> "OD2" Residue "Am TYR 319": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "Aq ARG 7": "NH1" <-> "NH2" Residue "Aq PHE 16": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "Aq ARG 22": "NH1" <-> "NH2" Residue "Aq ARG 60": "NH1" <-> "NH2" Residue "Aq GLU 92": "OE1" <-> "OE2" Residue "Aq ARG 145": "NH1" <-> "NH2" Residue "Aq ARG 154": "NH1" <-> "NH2" Residue "Aq ARG 165": "NH1" <-> "NH2" Residue "Aq ARG 166": "NH1" <-> "NH2" Residue "Aq ARG 176": "NH1" <-> "NH2" Residue "Aq ARG 226": "NH1" <-> "NH2" Residue "Aq ARG 276": "NH1" <-> "NH2" Residue "Aq ARG 320": "NH1" <-> "NH2" Residue "BE GLU 37": "OE1" <-> "OE2" Residue "BE ARG 70": "NH1" <-> "NH2" Residue "Ak ARG 26": "NH1" <-> "NH2" Residue "Ak ARG 44": "NH1" <-> "NH2" Residue "Ak GLU 74": "OE1" <-> "OE2" Residue "Ak ARG 78": "NH1" <-> "NH2" Residue "Ak GLU 141": "OE1" <-> "OE2" Residue "Ak GLU 155": "OE1" <-> "OE2" Residue "Ak ARG 164": "NH1" <-> "NH2" Residue "Ak ARG 194": "NH1" <-> "NH2" Residue "Ak ARG 209": "NH1" <-> "NH2" Residue "Ak ARG 235": "NH1" <-> "NH2" Residue "Ak ARG 269": "NH1" <-> "NH2" Residue "Ak ARG 283": "NH1" <-> "NH2" Residue "Ak GLU 291": "OE1" <-> "OE2" Residue "BP ARG -41": "NH1" <-> "NH2" Residue "BP GLU -11": "OE1" <-> "OE2" Residue "BP ARG -6": "NH1" <-> "NH2" Residue "BP ARG 9": "NH1" <-> "NH2" Residue "BP GLU 18": "OE1" <-> "OE2" Residue "BP GLU 64": "OE1" <-> "OE2" Residue "BP GLU 91": "OE1" <-> "OE2" Residue "BP ARG 97": "NH1" <-> "NH2" Residue "BP PHE 146": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "BP ARG 156": "NH1" <-> "NH2" Residue "BP GLU 186": "OE1" <-> "OE2" Residue "Ad ARG 32": "NH1" <-> "NH2" Residue "Ad ARG 46": "NH1" <-> "NH2" Residue "Ad ARG 82": "NH1" <-> "NH2" Residue "Ad TYR 183": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "Ad GLU 190": "OE1" <-> "OE2" Residue "Ad GLU 197": "OE1" <-> "OE2" Residue "BF ARG 14": "NH1" <-> "NH2" Residue "BF GLU 34": "OE1" <-> "OE2" Residue "BF TYR 45": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "BF ARG 63": "NH1" <-> "NH2" Residue "BF ARG 81": "NH1" <-> "NH2" Residue "BF ARG 89": "NH1" <-> "NH2" Residue "BF ARG 96": "NH1" <-> "NH2" Residue "BF ARG 99": "NH1" <-> "NH2" Residue "BF ARG 105": "NH1" <-> "NH2" Residue "Av GLU 68": "OE1" <-> "OE2" Residue "Av GLU 121": "OE1" <-> "OE2" Residue "Av ARG 126": "NH1" <-> "NH2" Residue "Av GLU 133": "OE1" <-> "OE2" Residue "Av ARG 138": "NH1" <-> "NH2" Residue "Af ARG 28": "NH1" <-> "NH2" Residue "Af ARG 50": "NH1" <-> "NH2" Residue "Af ARG 64": "NH1" <-> "NH2" Residue "Af ARG 80": "NH1" <-> "NH2" Residue "Af ARG 85": "NH1" <-> "NH2" Residue "Af ARG 98": "NH1" <-> "NH2" Residue "Af GLU 154": "OE1" <-> "OE2" Residue "As ARG 57": "NH1" <-> "NH2" Residue "As GLU 65": "OE1" <-> "OE2" Residue "As ARG 108": "NH1" <-> "NH2" Residue "As GLU 139": "OE1" <-> "OE2" Residue "Ae ARG 67": "NH1" <-> "NH2" Residue "Ae ARG 109": "NH1" <-> "NH2" Residue "Ae GLU 233": "OE1" <-> "OE2" Residue "Ac ARG 47": "NH1" <-> "NH2" Residue "Ac GLU 70": "OE1" <-> "OE2" Residue "Ac GLU 89": "OE1" <-> "OE2" Residue "Ac GLU 175": "OE1" <-> "OE2" Residue "Ac ARG 188": "NH1" <-> "NH2" Residue "Ac GLU 208": "OE1" <-> "OE2" Residue "Ac ARG 231": "NH1" <-> "NH2" Residue "Ah ARG 71": "NH1" <-> "NH2" Residue "Ah ARG 94": "NH1" <-> "NH2" Residue "Ah ARG 105": "NH1" <-> "NH2" Residue "Ah GLU 108": "OE1" <-> "OE2" Residue "Ah ARG 113": "NH1" <-> "NH2" Residue "Ah GLU 118": "OE1" <-> "OE2" Residue "Ah GLU 139": "OE1" <-> "OE2" Residue "Ah ARG 178": "NH1" <-> "NH2" Residue "Ah ARG 274": "NH1" <-> "NH2" Residue "Ah ARG 278": "NH1" <-> "NH2" Residue "Ah GLU 289": "OE1" <-> "OE2" Residue "Ah GLU 290": "OE1" <-> "OE2" Residue "Ah ARG 339": "NH1" <-> "NH2" Residue "Ah ARG 351": "NH1" <-> "NH2" Residue "Ah GLU 392": "OE1" <-> "OE2" Residue "Ah ARG 427": "NH1" <-> "NH2" Residue "Ah ARG 454": "NH1" <-> "NH2" Residue "Ah GLU 485": "OE1" <-> "OE2" Residue "Ah GLU 486": "OE1" <-> "OE2" Residue "BD GLU 39": "OE1" <-> "OE2" Residue "BD GLU 47": "OE1" <-> "OE2" Residue "BD ARG 50": "NH1" <-> "NH2" Residue "BD ARG 65": "NH1" <-> "NH2" Residue "BD ARG 87": "NH1" <-> "NH2" Residue "BD ARG 96": "NH1" <-> "NH2" Residue "Ay ARG 38": "NH1" <-> "NH2" Residue "Ay ARG 95": "NH1" <-> "NH2" Residue "Ay GLU 96": "OE1" <-> "OE2" Residue "Ay ARG 133": "NH1" <-> "NH2" Residue "Ay ARG 149": "NH1" <-> "NH2" Residue "Ay GLU 159": "OE1" <-> "OE2" Residue "Ag ARG 43": "NH1" <-> "NH2" Residue "Ag ARG 77": "NH1" <-> "NH2" Residue "Ag GLU 88": "OE1" <-> "OE2" Residue "Ag ARG 107": "NH1" <-> "NH2" Residue "Ag GLU 142": "OE1" <-> "OE2" Residue "Ag GLU 161": "OE1" <-> "OE2" Residue "Ag ARG 169": "NH1" <-> "NH2" Residue "Ag ARG 184": "NH1" <-> "NH2" Residue "Ag GLU 190": "OE1" <-> "OE2" Residue "Ax GLU 79": "OE1" <-> "OE2" Residue "Ax GLU 91": "OE1" <-> "OE2" Residue "Ax ARG 163": "NH1" <-> "NH2" Residue "Ax GLU 209": "OE1" <-> "OE2" Residue "BL ARG 72": "NH1" <-> "NH2" Residue "BL ARG 113": "NH1" <-> "NH2" Residue "BL ARG 119": "NH1" <-> "NH2" Residue "BL ARG 134": "NH1" <-> "NH2" Residue "BL ARG 144": "NH1" <-> "NH2" Residue "BL ARG 154": "NH1" <-> "NH2" Residue "BL ARG 167": "NH1" <-> "NH2" Residue "BL GLU 185": "OE1" <-> "OE2" Residue "BL GLU 216": "OE1" <-> "OE2" Residue "BL ARG 248": "NH1" <-> "NH2" Residue "BL GLU 251": "OE1" <-> "OE2" Residue "BL ARG 277": "NH1" <-> "NH2" Residue "BL ARG 278": "NH1" <-> "NH2" Residue "BL ARG 287": "NH1" <-> "NH2" Residue "BL ARG 292": "NH1" <-> "NH2" Residue "BL GLU 295": "OE1" <-> "OE2" Residue "BL ARG 310": "NH1" <-> "NH2" Residue "BL ARG 352": "NH1" <-> "NH2" Residue "BL ARG 354": "NH1" <-> "NH2" Residue "BO ARG 39": "NH1" <-> "NH2" Residue "BO ARG 78": "NH1" <-> "NH2" Residue "BO ARG 87": "NH1" <-> "NH2" Residue "BO ARG 92": "NH1" <-> "NH2" Residue "BO ARG 100": "NH1" <-> "NH2" Residue "BO ARG 105": "NH1" <-> "NH2" Residue "BO ARG 109": "NH1" <-> "NH2" Residue "BO GLU 114": "OE1" <-> "OE2" Residue "BO ARG 117": "NH1" <-> "NH2" Residue "BO ARG 119": "NH1" <-> "NH2" Residue "BO ARG 139": "NH1" <-> "NH2" Residue "BO ARG 149": "NH1" <-> "NH2" Residue "BO ARG 159": "NH1" <-> "NH2" Residue "BO ARG 165": "NH1" <-> "NH2" Residue "BO ARG 172": "NH1" <-> "NH2" Residue "BG ARG 1278": "NH1" <-> "NH2" Residue "BG ARG 1279": "NH1" <-> "NH2" Residue "BG ARG 1283": "NH1" <-> "NH2" Residue "BG ARG 1297": "NH1" <-> "NH2" Residue "BG ARG 1307": "NH1" <-> "NH2" Residue "BG ARG 1326": "NH1" <-> "NH2" Residue "BG ARG 1329": "NH1" <-> "NH2" Residue "BG GLU 1340": "OE1" <-> "OE2" Time to flip residues: 0.29s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5288/modules/chem_data/mon_lib" Total number of atoms: 143667 Number of models: 1 Model: "" Number of chains: 77 Chain: "A" Number of atoms: 2996 Number of conformers: 1 Conformer: "" Number of residues, atoms: 368, 2996 Classifications: {'peptide': 368} Link IDs: {'PTRANS': 27, 'TRANS': 340} Chain: "B" Number of atoms: 3513 Number of conformers: 1 Conformer: "" Number of residues, atoms: 435, 3513 Classifications: {'peptide': 435} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 40, 'TRANS': 394} Chain: "C" Number of atoms: 1772 Number of conformers: 1 Conformer: "" Number of residues, atoms: 212, 1772 Classifications: {'peptide': 212} Link IDs: {'PTRANS': 21, 'TRANS': 190} Chain: "D" Number of atoms: 1036 Number of conformers: 1 Conformer: "" Number of residues, atoms: 128, 1036 Classifications: {'peptide': 128} Link IDs: {'PTRANS': 8, 'TRANS': 119} Chain: "E" Number of atoms: 2668 Number of conformers: 1 Conformer: "" Number of residues, atoms: 326, 2668 Classifications: {'peptide': 326} Link IDs: {'PTRANS': 20, 'TRANS': 305} Chain: "F" Number of atoms: 1435 Number of conformers: 1 Conformer: "" Number of residues, atoms: 170, 1435 Classifications: {'peptide': 170} Link IDs: {'PTRANS': 12, 'TRANS': 157} Chain: "G" Number of atoms: 3012 Number of conformers: 1 Conformer: "" Number of residues, atoms: 365, 3012 Classifications: {'peptide': 365} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 26, 'TRANS': 338} Chain: "H" Number of atoms: 1305 Number of conformers: 1 Conformer: "" Number of residues, atoms: 162, 1305 Classifications: {'peptide': 162} Link IDs: {'PTRANS': 10, 'TRANS': 151} Chain: "I" Number of atoms: 2153 Number of conformers: 1 Conformer: "" Number of residues, atoms: 257, 2153 Classifications: {'peptide': 257} Link IDs: {'PTRANS': 19, 'TRANS': 237} Chain: "J" Number of atoms: 1146 Number of conformers: 1 Conformer: "" Number of residues, atoms: 141, 1146 Classifications: {'peptide': 141} Link IDs: {'PTRANS': 7, 'TRANS': 133} Chain: "K" Number of atoms: 1467 Number of conformers: 1 Conformer: "" Number of residues, atoms: 179, 1467 Classifications: {'peptide': 179} Link IDs: {'PTRANS': 12, 'TRANS': 166} Chain: "L" Number of atoms: 1419 Number of conformers: 1 Conformer: "" Number of residues, atoms: 178, 1419 Classifications: {'peptide': 178} Link IDs: {'PTRANS': 12, 'TRANS': 165} Chain: "M" Number of atoms: 2116 Number of conformers: 1 Conformer: "" Number of residues, atoms: 259, 2116 Classifications: {'peptide': 259} Link IDs: {'PTRANS': 15, 'TRANS': 243} Chain: "N" Number of atoms: 1599 Number of conformers: 1 Conformer: "" Number of residues, atoms: 189, 1599 Classifications: {'peptide': 189} Link IDs: {'PTRANS': 18, 'TRANS': 170} Chain: "O" Number of atoms: 2537 Number of conformers: 1 Conformer: "" Number of residues, atoms: 307, 2537 Classifications: {'peptide': 307} Link IDs: {'PTRANS': 18, 'TRANS': 288} Chain: "P" Number of atoms: 1367 Number of conformers: 1 Conformer: "" Number of residues, atoms: 165, 1367 Classifications: {'peptide': 165} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 14, 'TRANS': 150} Chain: "Q" Number of atoms: 1785 Number of conformers: 1 Conformer: "" Number of residues, atoms: 217, 1785 Classifications: {'peptide': 217} Link IDs: {'PTRANS': 12, 'TRANS': 204} Chain: "R" Number of atoms: 3755 Number of conformers: 1 Conformer: "" Number of residues, atoms: 472, 3755 Classifications: {'peptide': 472} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 40, 'TRANS': 431} Chain: "S" Number of atoms: 1244 Number of conformers: 1 Conformer: "" Number of residues, atoms: 150, 1244 Classifications: {'peptide': 150} Link IDs: {'PTRANS': 9, 'TRANS': 140} Chain: "T" Number of atoms: 487 Number of conformers: 1 Conformer: "" Number of residues, atoms: 55, 487 Classifications: {'peptide': 55} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 4, 'TRANS': 50} Chain: "U" Number of atoms: 744 Number of conformers: 1 Conformer: "" Number of residues, atoms: 92, 744 Classifications: {'peptide': 92} Link IDs: {'PTRANS': 5, 'TRANS': 86} Chain: "V" Number of atoms: 1202 Number of conformers: 1 Conformer: "" Number of residues, atoms: 141, 1202 Classifications: {'peptide': 141} Link IDs: {'PTRANS': 8, 'TRANS': 132} Chain: "W" Number of atoms: 465 Number of conformers: 1 Conformer: "" Number of residues, atoms: 54, 465 Classifications: {'peptide': 54} Link IDs: {'PTRANS': 4, 'TRANS': 49} Chain: "X" Number of atoms: 3733 Number of conformers: 1 Conformer: "" Number of residues, atoms: 468, 3733 Classifications: {'peptide': 468} Link IDs: {'PTRANS': 46, 'TRANS': 421} Chain: "Y" Number of atoms: 2067 Number of conformers: 1 Conformer: "" Number of residues, atoms: 255, 2067 Classifications: {'peptide': 255} Link IDs: {'PTRANS': 15, 'TRANS': 239} Chain: "Z" Number of atoms: 1223 Number of conformers: 1 Conformer: "" Number of residues, atoms: 150, 1223 Classifications: {'peptide': 150} Link IDs: {'PTRANS': 18, 'TRANS': 131} Chain: "BA" Number of atoms: 1038 Number of conformers: 1 Conformer: "" Number of residues, atoms: 138, 1038 Classifications: {'peptide': 138} Link IDs: {'PTRANS': 8, 'TRANS': 129} Chain: "UA" Number of atoms: 1015 Number of conformers: 1 Conformer: "" Number of residues, atoms: 203, 1015 Classifications: {'peptide': 203} Incomplete info: {'truncation_to_alanine': 203} Link IDs: {'TRANS': 202} Unresolved non-hydrogen bonds: 406 Unresolved non-hydrogen angles: 609 Unresolved non-hydrogen dihedrals: 203 Planarities with less than four sites: {'UNK:plan-1': 203} Unresolved non-hydrogen planarities: 203 Chain: "BB" Number of atoms: 1028 Number of conformers: 1 Conformer: "" Number of residues, atoms: 122, 1028 Classifications: {'peptide': 122} Link IDs: {'PTRANS': 8, 'TRANS': 113} Chain: "Aw" Number of atoms: 1509 Number of conformers: 1 Conformer: "" Number of residues, atoms: 185, 1509 Classifications: {'peptide': 185} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 13, 'TRANS': 171} Chain: "Bj" Number of atoms: 1358 Number of conformers: 1 Conformer: "" Number of residues, atoms: 168, 1358 Classifications: {'peptide': 168} Link IDs: {'PTRANS': 15, 'TRANS': 152} Chain: "An" Number of atoms: 2605 Number of conformers: 1 Conformer: "" Number of residues, atoms: 314, 2605 Classifications: {'peptide': 314} Link IDs: {'PTRANS': 20, 'TRANS': 293} Chain: "Al" Number of atoms: 2152 Number of conformers: 1 Conformer: "" Number of residues, atoms: 264, 2152 Classifications: {'peptide': 264} Link IDs: {'PTRANS': 20, 'TRANS': 243} Chain: "BI" Number of atoms: 1409 Number of conformers: 1 Conformer: "" Number of residues, atoms: 186, 1409 Classifications: {'peptide': 186} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 11, 'TRANS': 174} Chain: "Az" Number of atoms: 1215 Number of conformers: 1 Conformer: "" Number of residues, atoms: 138, 1215 Classifications: {'peptide': 138} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 7, 'TRANS': 130} Chain: "At" Number of atoms: 1346 Number of conformers: 1 Conformer: "" Number of residues, atoms: 165, 1346 Classifications: {'peptide': 165} Link IDs: {'PTRANS': 6, 'TRANS': 158} Chain: "BC" Number of atoms: 1114 Number of conformers: 1 Conformer: "" Number of residues, atoms: 140, 1114 Classifications: {'peptide': 140} Link IDs: {'PTRANS': 3, 'TRANS': 136} Chain: "Ab" Number of atoms: 2185 Number of conformers: 1 Conformer: "" Number of residues, atoms: 260, 2185 Classifications: {'peptide': 260} Link IDs: {'PTRANS': 17, 'TRANS': 242} Chain: "Ai" Number of atoms: 3789 Number of conformers: 1 Conformer: "" Number of residues, atoms: 476, 3789 Classifications: {'peptide': 476} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 21, 'TRANS': 454} Chain: "Ap" Number of atoms: 1775 Number of conformers: 1 Conformer: "" Number of residues, atoms: 214, 1775 Classifications: {'peptide': 214} Link IDs: {'PTRANS': 8, 'TRANS': 205} Chain: "Au" Number of atoms: 1490 Number of conformers: 1 Conformer: "" Number of residues, atoms: 176, 1490 Classifications: {'peptide': 176} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 14, 'TRANS': 161} Chain: "Aa" Number of atoms: 1417 Number of conformers: 1 Conformer: "" Number of residues, atoms: 178, 1417 Classifications: {'peptide': 178} Link IDs: {'PTRANS': 10, 'TRANS': 167} Chain: "Ao" Number of atoms: 2276 Number of conformers: 1 Conformer: "" Number of residues, atoms: 275, 2276 Classifications: {'peptide': 275} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 20, 'TRANS': 254} Chain: "BM" Number of atoms: 3069 Number of conformers: 1 Conformer: "" Number of residues, atoms: 389, 3069 Classifications: {'peptide': 389} Link IDs: {'PTRANS': 22, 'TRANS': 366} Chain: "Ar" Number of atoms: 1644 Number of conformers: 1 Conformer: "" Number of residues, atoms: 195, 1644 Classifications: {'peptide': 195} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 8, 'TRANS': 186} Chain: "Aj" Number of atoms: 2766 Number of conformers: 1 Conformer: "" Number of residues, atoms: 341, 2766 Classifications: {'peptide': 341} Link IDs: {'PTRANS': 17, 'TRANS': 323} Chain breaks: 1 Chain: "BH" Number of atoms: 1659 Number of conformers: 1 Conformer: "" Number of residues, atoms: 214, 1659 Classifications: {'peptide': 214} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 13, 'TRANS': 200} Chain: "Am" Number of atoms: 2708 Number of conformers: 1 Conformer: "" Number of residues, atoms: 330, 2708 Classifications: {'peptide': 330} Link IDs: {'PTRANS': 20, 'TRANS': 309} Chain: "Aq" Number of atoms: 2074 Number of conformers: 1 Conformer: "" Number of residues, atoms: 258, 2074 Classifications: {'peptide': 258} Link IDs: {'PTRANS': 20, 'TRANS': 237} Chain breaks: 3 Chain: "BE" Number of atoms: 700 Number of conformers: 1 Conformer: "" Number of residues, atoms: 84, 700 Classifications: {'peptide': 84} Link IDs: {'PTRANS': 6, 'TRANS': 77} Chain: "Ak" Number of atoms: 2352 Number of conformers: 1 Conformer: "" Number of residues, atoms: 300, 2352 Classifications: {'peptide': 300} Link IDs: {'PTRANS': 16, 'TRANS': 283} Chain: "BP" Number of atoms: 1593 Number of conformers: 1 Conformer: "" Number of residues, atoms: 195, 1593 Classifications: {'peptide': 195} Link IDs: {'PTRANS': 22, 'TRANS': 172} Chain breaks: 1 Chain: "Ad" Number of atoms: 1632 Number of conformers: 1 Conformer: "" Number of residues, atoms: 207, 1632 Classifications: {'peptide': 207} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 16, 'TRANS': 190} Chain breaks: 1 Chain: "BF" Number of atoms: 851 Number of conformers: 1 Conformer: "" Number of residues, atoms: 101, 851 Classifications: {'peptide': 101} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 5, 'TRANS': 95} Chain: "Av" Number of atoms: 1300 Number of conformers: 1 Conformer: "" Number of residues, atoms: 155, 1300 Classifications: {'peptide': 155} Link IDs: {'PTRANS': 10, 'TRANS': 144} Chain: "Af" Number of atoms: 1132 Number of conformers: 1 Conformer: "" Number of residues, atoms: 139, 1132 Classifications: {'peptide': 139} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 16, 'TRANS': 122} Chain: "As" Number of atoms: 787 Number of conformers: 1 Conformer: "" Number of residues, atoms: 97, 787 Classifications: {'peptide': 97} Link IDs: {'PTRANS': 3, 'TRANS': 93} Chain: "Ae" Number of atoms: 2359 Number of conformers: 1 Conformer: "" Number of residues, atoms: 291, 2359 Classifications: {'peptide': 291} Link IDs: {'PTRANS': 25, 'TRANS': 265} Chain: "Ac" Number of atoms: 2174 Number of conformers: 1 Conformer: "" Number of residues, atoms: 268, 2174 Classifications: {'peptide': 268} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 17, 'TRANS': 250} Chain: "Ah" Number of atoms: 3686 Number of conformers: 1 Conformer: "" Number of residues, atoms: 452, 3686 Classifications: {'peptide': 452} Link IDs: {'PTRANS': 21, 'TRANS': 430} Chain: "BD" Number of atoms: 807 Number of conformers: 1 Conformer: "" Number of residues, atoms: 97, 807 Classifications: {'peptide': 97} Link IDs: {'PTRANS': 3, 'TRANS': 93} Chain: "Ay" Number of atoms: 1226 Number of conformers: 1 Conformer: "" Number of residues, atoms: 142, 1226 Classifications: {'peptide': 142} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 10, 'TRANS': 131} Chain: "Ag" Number of atoms: 1916 Number of conformers: 1 Conformer: "" Number of residues, atoms: 231, 1916 Classifications: {'peptide': 231} Link IDs: {'PTRANS': 13, 'TRANS': 217} Chain: "Ax" Number of atoms: 1388 Number of conformers: 1 Conformer: "" Number of residues, atoms: 167, 1388 Classifications: {'peptide': 167} Link IDs: {'PTRANS': 11, 'TRANS': 155} Chain: "BL" Number of atoms: 2497 Number of conformers: 1 Conformer: "" Number of residues, atoms: 309, 2497 Classifications: {'peptide': 309} Link IDs: {'PTRANS': 20, 'TRANS': 288} Chain: "BO" Number of atoms: 1239 Number of conformers: 1 Conformer: "" Number of residues, atoms: 155, 1239 Classifications: {'peptide': 155} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 4, 'TRANS': 150} Chain: "BG" Number of atoms: 643 Number of conformers: 1 Conformer: "" Number of residues, atoms: 85, 643 Classifications: {'peptide': 85} Incomplete info: {'truncation_to_alanine': 10} Link IDs: {'PTRANS': 7, 'TRANS': 77} Unresolved chain link angles: 1 Unresolved non-hydrogen bonds: 35 Unresolved non-hydrogen angles: 46 Unresolved non-hydrogen dihedrals: 29 Unresolved non-hydrogen chiralities: 3 Planarities with less than four sites: {'GLN:plan1': 1, 'PHE:plan': 1, 'ASN:plan1': 1, 'ASP:plan': 1, 'HIS:plan': 1} Unresolved non-hydrogen planarities: 21 Chain: "UB" Number of atoms: 335 Number of conformers: 1 Conformer: "" Number of residues, atoms: 67, 335 Classifications: {'peptide': 67} Incomplete info: {'truncation_to_alanine': 67} Link IDs: {'TRANS': 66} Unresolved non-hydrogen bonds: 134 Unresolved non-hydrogen angles: 201 Unresolved non-hydrogen dihedrals: 67 Planarities with less than four sites: {'UNK:plan-1': 67} Unresolved non-hydrogen planarities: 67 Chain: "UC" Number of atoms: 720 Number of conformers: 1 Conformer: "" Number of residues, atoms: 144, 720 Classifications: {'peptide': 144} Incomplete info: {'truncation_to_alanine': 144} Link IDs: {'TRANS': 143} Unresolved non-hydrogen bonds: 288 Unresolved non-hydrogen angles: 432 Unresolved non-hydrogen dihedrals: 144 Planarities with less than four sites: {'UNK:plan-1': 144} Unresolved non-hydrogen planarities: 144 Chain: "UD" Number of atoms: 475 Number of conformers: 1 Conformer: "" Number of residues, atoms: 95, 475 Classifications: {'peptide': 95} Incomplete info: {'truncation_to_alanine': 95} Link IDs: {'TRANS': 94} Unresolved non-hydrogen bonds: 190 Unresolved non-hydrogen angles: 285 Unresolved non-hydrogen dihedrals: 95 Planarities with less than four sites: {'UNK:plan-1': 95} Unresolved non-hydrogen planarities: 95 Chain: "1" Number of atoms: 22918 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1087, 22918 Classifications: {'RNA': 1087} Modifications used: {'rna2p_pur': 147, 'rna2p_pyr': 188, 'rna3p_pur': 389, 'rna3p_pyr': 363} Link IDs: {'rna2p': 335, 'rna3p': 751} Chain breaks: 1 Chain: "T" Number of atoms: 1 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 1 Unusual residues: {' ZN': 1} Classifications: {'undetermined': 1} Chain: "W" Number of atoms: 1 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 1 Unusual residues: {' ZN': 1} Classifications: {'undetermined': 1} Chain: "BD" Number of atoms: 1 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 1 Unusual residues: {' ZN': 1} Classifications: {'undetermined': 1} Chain: "Ag" Number of atoms: 44 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 44 Unusual residues: {'NAD': 1} Classifications: {'undetermined': 1} Chain: "Ax" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' ZN': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "BG" Number of atoms: 1 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 1 Unusual residues: {' ZN': 1} Classifications: {'undetermined': 1} List of CYS excluded from plausible disulfide bonds: (reason: may participate in coordination) ATOM 38641 SG CYS T 63 100.003 65.199 224.984 1.00 34.73 S ATOM 38722 SG CYS T 73 98.469 67.562 223.329 1.00 39.80 S ATOM 38767 SG CYS T 78 97.164 66.522 226.134 1.00 44.96 S ATOM 40870 SG CYS W 73 106.900 175.707 214.953 1.00 43.01 S ATOM 40896 SG CYS W 76 107.994 174.085 214.273 1.00 45.85 S ATOM A07DQ SG CYSBD 13 141.401 86.150 86.963 1.00 36.14 S ATOM A07E8 SG CYSBD 16 144.073 85.294 84.755 1.00 38.72 S ATOM A07OJ SG CYSBD 63 145.539 88.453 85.661 1.00 38.72 S ATOM A07PA SG CYSBD 66 142.903 88.138 83.354 1.00 38.52 S ATOM A0APP SG CYSAx 105 52.765 64.172 165.230 1.00 35.61 S ATOM A0AQE SG CYSAx 108 53.577 62.325 164.823 1.00 37.31 S ATOM A0AXW SG CYSAx 142 55.586 62.786 164.466 1.00 30.40 S ATOM A0B4H SG CYSAx 169 57.061 73.431 151.067 1.00 31.16 S ATOM A0EFX SG CYSBG1287 50.912 66.473 191.665 1.00 43.42 S Time building chain proxies: 54.01, per 1000 atoms: 0.38 Number of scatterers: 143667 At special positions: 0 Unit cell: (243.95, 258.23, 299.88, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 6 Type Number sf(0) Zn 6 29.99 S 557 16.00 P 1089 15.00 O 29317 8.00 N 25939 7.00 C 86759 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=2, symmetry=0 Simple disulfide: pdb=" SG CYSAx 145 " - pdb=" SG CYSAx 166 " distance=2.42 Simple disulfide: pdb=" SG CYSBO 68 " - pdb=" SG CYSBO 74 " distance=2.06 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=0, symmetry=0 Time building additional restraints: 51.48 Conformation dependent library (CDL) restraints added in 16.1 seconds Dynamic metal coordination Zn2+ tetrahedral coordination pdb=" ZN T 101 " pdb="ZN ZN T 101 " - pdb=" SG CYS T 73 " pdb="ZN ZN T 101 " - pdb=" SG CYS T 63 " pdb="ZN ZN T 101 " - pdb=" SG CYS T 78 " pdb=" ZN W 201 " pdb="ZN ZN W 201 " - pdb=" ND1 HIS W 96 " pdb="ZN ZN W 201 " - pdb=" SG CYS W 73 " pdb="ZN ZN W 201 " - pdb=" SG CYS W 76 " pdb=" ZNAx 301 " pdb="ZN ZNAx 301 " - pdb=" ND1 HISAx 139 " pdb="ZN ZNAx 301 " - pdb=" SG CYSAx 105 " pdb="ZN ZNAx 301 " - pdb=" SG CYSAx 142 " pdb="ZN ZNAx 301 " - pdb=" SG CYSAx 108 " pdb=" ZNAx 302 " pdb="ZN ZNAx 302 " - pdb=" SG CYSAx 169 " pdb=" ZNBD 501 " pdb="ZN ZNBD 501 " - pdb=" SG CYSBD 16 " pdb="ZN ZNBD 501 " - pdb=" SG CYSBD 66 " pdb="ZN ZNBD 501 " - pdb=" SG CYSBD 13 " pdb="ZN ZNBD 501 " - pdb=" SG CYSBD 63 " pdb=" ZNBG1401 " pdb="ZN ZNBG1401 " - pdb=" SG CYSBG1287 " Number of angles added : 9 28704 Ramachandran restraints generated. 14352 Oldfield, 0 Emsley, 14352 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 28388 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 537 helices and 85 sheets defined 44.0% alpha, 7.9% beta 67 base pairs and 320 stacking pairs defined. Time for finding SS restraints: 87.47 Creating SS restraints... Processing helix chain 'A' and resid 43 through 48 removed outlier: 3.638A pdb=" N ARG A 47 " --> pdb=" O GLU A 43 " (cutoff:3.500A) removed outlier: 5.698A pdb=" N ASP A 48 " --> pdb=" O GLU A 44 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 43 through 48' Processing helix chain 'A' and resid 87 through 104 removed outlier: 3.679A pdb=" N ASP A 92 " --> pdb=" O ALA A 88 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N LEU A 100 " --> pdb=" O ALA A 96 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ALA A 102 " --> pdb=" O VAL A 98 " (cutoff:3.500A) Processing helix chain 'A' and resid 108 through 116 removed outlier: 4.043A pdb=" N TYR A 112 " --> pdb=" O TYR A 108 " (cutoff:3.500A) removed outlier: 4.857A pdb=" N ALA A 113 " --> pdb=" O GLN A 109 " (cutoff:3.500A) removed outlier: 5.362A pdb=" N TRP A 114 " --> pdb=" O ASP A 110 " (cutoff:3.500A) removed outlier: 4.952A pdb=" N ASP A 115 " --> pdb=" O THR A 111 " (cutoff:3.500A) Processing helix chain 'A' and resid 186 through 191 removed outlier: 4.090A pdb=" N HIS A 190 " --> pdb=" O PRO A 186 " (cutoff:3.500A) removed outlier: 5.545A pdb=" N LYS A 191 " --> pdb=" O VAL A 187 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 186 through 191' Processing helix chain 'A' and resid 192 through 202 removed outlier: 4.029A pdb=" N PHE A 197 " --> pdb=" O HIS A 193 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N TYR A 198 " --> pdb=" O VAL A 194 " (cutoff:3.500A) Processing helix chain 'A' and resid 250 through 255 Processing helix chain 'A' and resid 363 through 368 removed outlier: 4.667A pdb=" N LEU A 367 " --> pdb=" O ASP A 363 " (cutoff:3.500A) removed outlier: 5.319A pdb=" N ALA A 368 " --> pdb=" O LEU A 364 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 363 through 368' Processing helix chain 'A' and resid 388 through 393 removed outlier: 5.182A pdb=" N VAL A 393 " --> pdb=" O ALA A 389 " (cutoff:3.500A) Processing helix chain 'A' and resid 394 through 400 removed outlier: 4.468A pdb=" N ASP A 400 " --> pdb=" O ALA A 396 " (cutoff:3.500A) Processing helix chain 'A' and resid 227 through 232 removed outlier: 4.525A pdb=" N LYS A 232 " --> pdb=" O ARG A 229 " (cutoff:3.500A) Processing helix chain 'B' and resid 117 through 139 removed outlier: 3.788A pdb=" N MET B 121 " --> pdb=" O GLU B 117 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N LYS B 123 " --> pdb=" O GLU B 119 " (cutoff:3.500A) removed outlier: 4.674A pdb=" N ASN B 124 " --> pdb=" O GLU B 120 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N TYR B 127 " --> pdb=" O LYS B 123 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N VAL B 130 " --> pdb=" O SER B 126 " (cutoff:3.500A) removed outlier: 5.033A pdb=" N GLN B 133 " --> pdb=" O LEU B 129 " (cutoff:3.500A) removed outlier: 6.204A pdb=" N ASN B 134 " --> pdb=" O VAL B 130 " (cutoff:3.500A) removed outlier: 6.460A pdb=" N PHE B 135 " --> pdb=" O ARG B 131 " (cutoff:3.500A) removed outlier: 9.515A pdb=" N SER B 136 " --> pdb=" O CYS B 132 " (cutoff:3.500A) removed outlier: 7.082A pdb=" N SER B 137 " --> pdb=" O GLN B 133 " (cutoff:3.500A) removed outlier: 3.774A pdb=" N LYS B 138 " --> pdb=" O ASN B 134 " (cutoff:3.500A) removed outlier: 4.464A pdb=" N TRP B 139 " --> pdb=" O PHE B 135 " (cutoff:3.500A) Processing helix chain 'B' and resid 182 through 187 removed outlier: 3.652A pdb=" N LEU B 186 " --> pdb=" O LYS B 182 " (cutoff:3.500A) removed outlier: 5.349A pdb=" N LEU B 187 " --> pdb=" O PRO B 183 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 182 through 187' Processing helix chain 'B' and resid 192 through 211 removed outlier: 3.877A pdb=" N LYS B 198 " --> pdb=" O LYS B 194 " (cutoff:3.500A) removed outlier: 4.435A pdb=" N LEU B 203 " --> pdb=" O SER B 199 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N LEU B 206 " --> pdb=" O MET B 202 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N MET B 208 " --> pdb=" O VAL B 204 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N GLY B 211 " --> pdb=" O LYS B 207 " (cutoff:3.500A) Processing helix chain 'B' and resid 225 through 237 removed outlier: 3.652A pdb=" N TYR B 229 " --> pdb=" O THR B 225 " (cutoff:3.500A) Processing helix chain 'B' and resid 263 through 271 removed outlier: 4.080A pdb=" N PHE B 271 " --> pdb=" O PHE B 267 " (cutoff:3.500A) Processing helix chain 'B' and resid 316 through 324 removed outlier: 3.591A pdb=" N ALA B 320 " --> pdb=" O ASN B 316 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N HIS B 323 " --> pdb=" O ASP B 319 " (cutoff:3.500A) removed outlier: 5.295A pdb=" N ASP B 324 " --> pdb=" O ALA B 320 " (cutoff:3.500A) Processing helix chain 'B' and resid 329 through 348 removed outlier: 3.843A pdb=" N GLN B 335 " --> pdb=" O GLY B 331 " (cutoff:3.500A) removed outlier: 4.658A pdb=" N THR B 342 " --> pdb=" O ASP B 338 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N HIS B 343 " --> pdb=" O GLU B 339 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N MET B 347 " --> pdb=" O HIS B 343 " (cutoff:3.500A) removed outlier: 3.889A pdb=" N LEU B 348 " --> pdb=" O LYS B 344 " (cutoff:3.500A) Processing helix chain 'B' and resid 349 through 360 removed outlier: 4.728A pdb=" N GLN B 355 " --> pdb=" O HIS B 351 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N LEU B 356 " --> pdb=" O ILE B 352 " (cutoff:3.500A) Proline residue: B 357 - end of helix Processing helix chain 'B' and resid 376 through 395 removed outlier: 3.644A pdb=" N ALA B 382 " --> pdb=" O GLN B 378 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N THR B 385 " --> pdb=" O ALA B 381 " (cutoff:3.500A) removed outlier: 5.400A pdb=" N ALA B 391 " --> pdb=" O GLU B 387 " (cutoff:3.500A) removed outlier: 5.360A pdb=" N MET B 392 " --> pdb=" O ALA B 388 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N TYR B 393 " --> pdb=" O GLU B 389 " (cutoff:3.500A) removed outlier: 4.714A pdb=" N ALA B 394 " --> pdb=" O GLN B 390 " (cutoff:3.500A) Proline residue: B 395 - end of helix Processing helix chain 'B' and resid 404 through 409 removed outlier: 5.008A pdb=" N GLY B 408 " --> pdb=" O GLN B 405 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N GLU B 409 " --> pdb=" O ASP B 406 " (cutoff:3.500A) Processing helix chain 'B' and resid 109 through 114 removed outlier: 4.014A pdb=" N PHE B 114 " --> pdb=" O PRO B 109 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 109 through 114' Processing helix chain 'C' and resid 28 through 33 removed outlier: 3.614A pdb=" N VAL C 32 " --> pdb=" O PRO C 28 " (cutoff:3.500A) removed outlier: 5.573A pdb=" N GLY C 33 " --> pdb=" O GLY C 29 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 28 through 33' Processing helix chain 'C' and resid 43 through 50 removed outlier: 3.544A pdb=" N THR C 49 " --> pdb=" O ARG C 45 " (cutoff:3.500A) Proline residue: C 50 - end of helix Processing helix chain 'C' and resid 51 through 59 removed outlier: 4.155A pdb=" N SER C 58 " --> pdb=" O ARG C 54 " (cutoff:3.500A) removed outlier: 5.240A pdb=" N THR C 59 " --> pdb=" O MET C 55 " (cutoff:3.500A) Processing helix chain 'C' and resid 60 through 68 removed outlier: 4.077A pdb=" N LYS C 65 " --> pdb=" O ALA C 61 " (cutoff:3.500A) removed outlier: 4.187A pdb=" N GLU C 68 " --> pdb=" O MET C 64 " (cutoff:3.500A) Processing helix chain 'C' and resid 82 through 87 removed outlier: 3.590A pdb=" N THR C 86 " --> pdb=" O ASP C 82 " (cutoff:3.500A) removed outlier: 6.879A pdb=" N VAL C 87 " --> pdb=" O LEU C 83 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 82 through 87' Processing helix chain 'C' and resid 92 through 97 removed outlier: 3.655A pdb=" N HIS C 96 " --> pdb=" O ASP C 92 " (cutoff:3.500A) Processing helix chain 'C' and resid 140 through 147 removed outlier: 3.732A pdb=" N ARG C 145 " --> pdb=" O ARG C 141 " (cutoff:3.500A) removed outlier: 4.367A pdb=" N GLU C 146 " --> pdb=" O ASN C 142 " (cutoff:3.500A) Processing helix chain 'C' and resid 158 through 166 Processing helix chain 'C' and resid 181 through 196 removed outlier: 3.610A pdb=" N LYS C 187 " --> pdb=" O HIS C 183 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N LEU C 188 " --> pdb=" O ALA C 184 " (cutoff:3.500A) removed outlier: 4.018A pdb=" N GLU C 190 " --> pdb=" O LYS C 186 " (cutoff:3.500A) Processing helix chain 'C' and resid 197 through 202 removed outlier: 4.767A pdb=" N TYR C 201 " --> pdb=" O GLU C 197 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N THR C 202 " --> pdb=" O ARG C 198 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 197 through 202' Processing helix chain 'C' and resid 203 through 208 removed outlier: 4.177A pdb=" N PHE C 207 " --> pdb=" O ILE C 203 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N ARG C 208 " --> pdb=" O GLU C 204 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 203 through 208' Processing helix chain 'D' and resid 49 through 57 removed outlier: 3.735A pdb=" N PHE D 53 " --> pdb=" O THR D 49 " (cutoff:3.500A) removed outlier: 4.555A pdb=" N ALA D 54 " --> pdb=" O PRO D 50 " (cutoff:3.500A) removed outlier: 5.358A pdb=" N THR D 55 " --> pdb=" O THR D 51 " (cutoff:3.500A) removed outlier: 4.578A pdb=" N TYR D 56 " --> pdb=" O TYR D 52 " (cutoff:3.500A) Processing helix chain 'D' and resid 68 through 73 removed outlier: 4.044A pdb=" N VAL D 72 " --> pdb=" O ASP D 68 " (cutoff:3.500A) Processing helix chain 'D' and resid 75 through 81 removed outlier: 4.450A pdb=" N SER D 81 " --> pdb=" O GLN D 77 " (cutoff:3.500A) Processing helix chain 'D' and resid 97 through 111 removed outlier: 3.868A pdb=" N ALA D 103 " --> pdb=" O TRP D 99 " (cutoff:3.500A) removed outlier: 4.006A pdb=" N ALA D 105 " --> pdb=" O ARG D 101 " (cutoff:3.500A) removed outlier: 4.231A pdb=" N MET D 108 " --> pdb=" O GLN D 104 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N ARG D 111 " --> pdb=" O ILE D 107 " (cutoff:3.500A) Processing helix chain 'D' and resid 118 through 130 removed outlier: 4.149A pdb=" N PHE D 122 " --> pdb=" O GLN D 118 " (cutoff:3.500A) removed outlier: 4.163A pdb=" N LEU D 129 " --> pdb=" O PHE D 125 " (cutoff:3.500A) removed outlier: 4.922A pdb=" N LYS D 130 " --> pdb=" O THR D 126 " (cutoff:3.500A) Processing helix chain 'D' and resid 131 through 141 Proline residue: D 135 - end of helix removed outlier: 4.185A pdb=" N VAL D 141 " --> pdb=" O LEU D 137 " (cutoff:3.500A) Processing helix chain 'E' and resid 28 through 40 removed outlier: 3.553A pdb=" N LYS E 34 " --> pdb=" O ASN E 30 " (cutoff:3.500A) removed outlier: 4.165A pdb=" N LYS E 36 " --> pdb=" O GLU E 32 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N ASP E 37 " --> pdb=" O ALA E 33 " (cutoff:3.500A) removed outlier: 4.629A pdb=" N ILE E 38 " --> pdb=" O LYS E 34 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N PHE E 39 " --> pdb=" O ALA E 35 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N ALA E 40 " --> pdb=" O LYS E 36 " (cutoff:3.500A) Processing helix chain 'E' and resid 67 through 76 removed outlier: 5.418A pdb=" N GLU E 71 " --> pdb=" O PRO E 67 " (cutoff:3.500A) removed outlier: 3.575A pdb=" N PHE E 72 " --> pdb=" O VAL E 68 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N LEU E 75 " --> pdb=" O GLU E 71 " (cutoff:3.500A) Processing helix chain 'E' and resid 78 through 90 removed outlier: 4.666A pdb=" N PHE E 82 " --> pdb=" O LYS E 78 " (cutoff:3.500A) removed outlier: 4.177A pdb=" N LYS E 84 " --> pdb=" O MET E 80 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N ARG E 89 " --> pdb=" O ALA E 85 " (cutoff:3.500A) Processing helix chain 'E' and resid 120 through 130 Processing helix chain 'E' and resid 138 through 143 Processing helix chain 'E' and resid 150 through 162 removed outlier: 3.564A pdb=" N CYS E 154 " --> pdb=" O THR E 150 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N GLU E 156 " --> pdb=" O GLU E 152 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N LYS E 159 " --> pdb=" O TYR E 155 " (cutoff:3.500A) removed outlier: 3.976A pdb=" N MET E 160 " --> pdb=" O GLU E 156 " (cutoff:3.500A) removed outlier: 3.677A pdb=" N LYS E 161 " --> pdb=" O ILE E 157 " (cutoff:3.500A) removed outlier: 4.845A pdb=" N GLN E 162 " --> pdb=" O ALA E 158 " (cutoff:3.500A) Processing helix chain 'E' and resid 172 through 188 removed outlier: 3.686A pdb=" N ARG E 179 " --> pdb=" O VAL E 175 " (cutoff:3.500A) Processing helix chain 'E' and resid 206 through 236 removed outlier: 3.980A pdb=" N GLU E 213 " --> pdb=" O GLN E 209 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N LYS E 216 " --> pdb=" O GLU E 212 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N HIS E 217 " --> pdb=" O GLU E 213 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N LYS E 219 " --> pdb=" O GLU E 215 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N MET E 222 " --> pdb=" O ARG E 218 " (cutoff:3.500A) removed outlier: 3.727A pdb=" N ILE E 223 " --> pdb=" O LYS E 219 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N SER E 235 " --> pdb=" O LYS E 231 " (cutoff:3.500A) Processing helix chain 'E' and resid 237 through 243 removed outlier: 3.549A pdb=" N ARG E 241 " --> pdb=" O PRO E 237 " (cutoff:3.500A) removed outlier: 5.393A pdb=" N HIS E 243 " --> pdb=" O ILE E 239 " (cutoff:3.500A) Processing helix chain 'E' and resid 251 through 262 removed outlier: 3.989A pdb=" N LEU E 259 " --> pdb=" O LEU E 255 " (cutoff:3.500A) removed outlier: 4.159A pdb=" N ASP E 261 " --> pdb=" O GLU E 257 " (cutoff:3.500A) removed outlier: 4.857A pdb=" N ALA E 262 " --> pdb=" O GLY E 258 " (cutoff:3.500A) Processing helix chain 'E' and resid 263 through 273 removed outlier: 3.674A pdb=" N TRP E 269 " --> pdb=" O LEU E 265 " (cutoff:3.500A) Processing helix chain 'E' and resid 281 through 296 removed outlier: 3.512A pdb=" N ALA E 288 " --> pdb=" O ASP E 284 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N ASN E 293 " --> pdb=" O ARG E 289 " (cutoff:3.500A) removed outlier: 4.107A pdb=" N THR E 294 " --> pdb=" O ARG E 290 " (cutoff:3.500A) Processing helix chain 'E' and resid 302 through 311 removed outlier: 3.694A pdb=" N MET E 306 " --> pdb=" O THR E 302 " (cutoff:3.500A) removed outlier: 3.845A pdb=" N VAL E 309 " --> pdb=" O GLU E 305 " (cutoff:3.500A) Processing helix chain 'E' and resid 316 through 330 removed outlier: 3.776A pdb=" N ASN E 326 " --> pdb=" O GLN E 322 " (cutoff:3.500A) removed outlier: 5.499A pdb=" N MET E 327 " --> pdb=" O ARG E 323 " (cutoff:3.500A) removed outlier: 6.088A pdb=" N THR E 328 " --> pdb=" O GLN E 324 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLY E 330 " --> pdb=" O ASN E 326 " (cutoff:3.500A) Processing helix chain 'E' and resid 331 through 336 removed outlier: 4.919A pdb=" N GLN E 335 " --> pdb=" O GLN E 331 " (cutoff:3.500A) removed outlier: 4.627A pdb=" N ALA E 336 " --> pdb=" O ALA E 332 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 331 through 336' Processing helix chain 'F' and resid 22 through 35 removed outlier: 3.684A pdb=" N ILE F 29 " --> pdb=" O HIS F 25 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N GLN F 32 " --> pdb=" O LYS F 28 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N TYR F 33 " --> pdb=" O ILE F 29 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N MET F 34 " --> pdb=" O ALA F 30 " (cutoff:3.500A) Processing helix chain 'F' and resid 56 through 61 removed outlier: 3.633A pdb=" N ALA F 60 " --> pdb=" O ASN F 56 " (cutoff:3.500A) removed outlier: 6.060A pdb=" N VAL F 61 " --> pdb=" O ILE F 57 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 56 through 61' Processing helix chain 'F' and resid 65 through 70 Processing helix chain 'F' and resid 86 through 94 removed outlier: 4.019A pdb=" N ARG F 93 " --> pdb=" O GLU F 89 " (cutoff:3.500A) Processing helix chain 'F' and resid 95 through 111 removed outlier: 3.914A pdb=" N TYR F 102 " --> pdb=" O VAL F 98 " (cutoff:3.500A) removed outlier: 3.773A pdb=" N ARG F 109 " --> pdb=" O ASP F 105 " (cutoff:3.500A) removed outlier: 4.526A pdb=" N HIS F 110 " --> pdb=" O GLU F 106 " (cutoff:3.500A) Processing helix chain 'F' and resid 114 through 125 removed outlier: 3.612A pdb=" N THR F 119 " --> pdb=" O LEU F 115 " (cutoff:3.500A) Proline residue: F 121 - end of helix removed outlier: 4.101A pdb=" N LYS F 124 " --> pdb=" O ALA F 120 " (cutoff:3.500A) removed outlier: 4.009A pdb=" N ALA F 125 " --> pdb=" O PRO F 121 " (cutoff:3.500A) Processing helix chain 'G' and resid 16 through 22 removed outlier: 4.371A pdb=" N THR G 20 " --> pdb=" O PRO G 16 " (cutoff:3.500A) removed outlier: 4.083A pdb=" N VAL G 21 " --> pdb=" O VAL G 17 " (cutoff:3.500A) Proline residue: G 22 - end of helix No H-bonds generated for 'chain 'G' and resid 16 through 22' Processing helix chain 'G' and resid 27 through 33 removed outlier: 3.931A pdb=" N ILE G 31 " --> pdb=" O PRO G 27 " (cutoff:3.500A) Proline residue: G 33 - end of helix Processing helix chain 'G' and resid 68 through 73 removed outlier: 4.691A pdb=" N ARG G 73 " --> pdb=" O ARG G 69 " (cutoff:3.500A) Processing helix chain 'G' and resid 80 through 88 Proline residue: G 88 - end of helix Processing helix chain 'G' and resid 93 through 98 removed outlier: 4.133A pdb=" N LEU G 97 " --> pdb=" O SER G 93 " (cutoff:3.500A) removed outlier: 4.968A pdb=" N THR G 98 " --> pdb=" O TRP G 94 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 93 through 98' Processing helix chain 'G' and resid 127 through 136 removed outlier: 4.391A pdb=" N ASP G 132 " --> pdb=" O ARG G 128 " (cutoff:3.500A) removed outlier: 4.679A pdb=" N ARG G 135 " --> pdb=" O ASN G 131 " (cutoff:3.500A) removed outlier: 4.722A pdb=" N GLY G 136 " --> pdb=" O ASP G 132 " (cutoff:3.500A) Processing helix chain 'G' and resid 149 through 155 removed outlier: 3.562A pdb=" N ALA G 154 " --> pdb=" O ARG G 150 " (cutoff:3.500A) Proline residue: G 155 - end of helix Processing helix chain 'G' and resid 176 through 187 removed outlier: 3.616A pdb=" N ASP G 185 " --> pdb=" O LEU G 181 " (cutoff:3.500A) Processing helix chain 'G' and resid 196 through 204 removed outlier: 3.608A pdb=" N LEU G 200 " --> pdb=" O THR G 196 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N LYS G 204 " --> pdb=" O LEU G 200 " (cutoff:3.500A) Processing helix chain 'G' and resid 207 through 212 removed outlier: 4.019A pdb=" N VAL G 211 " --> pdb=" O ALA G 207 " (cutoff:3.500A) removed outlier: 5.348A pdb=" N VAL G 212 " --> pdb=" O ASP G 208 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 207 through 212' Processing helix chain 'G' and resid 238 through 249 removed outlier: 3.723A pdb=" N GLU G 247 " --> pdb=" O GLN G 243 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N ALA G 248 " --> pdb=" O LEU G 244 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N GLY G 249 " --> pdb=" O LEU G 245 " (cutoff:3.500A) Processing helix chain 'G' and resid 258 through 268 removed outlier: 3.724A pdb=" N GLN G 264 " --> pdb=" O GLU G 260 " (cutoff:3.500A) Proline residue: G 268 - end of helix Processing helix chain 'G' and resid 281 through 288 Processing helix chain 'G' and resid 296 through 305 removed outlier: 4.523A pdb=" N GLN G 300 " --> pdb=" O GLY G 296 " (cutoff:3.500A) removed outlier: 4.839A pdb=" N TRP G 301 " --> pdb=" O TRP G 297 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N GLU G 303 " --> pdb=" O ALA G 299 " (cutoff:3.500A) Processing helix chain 'G' and resid 332 through 347 removed outlier: 3.585A pdb=" N LEU G 338 " --> pdb=" O GLU G 334 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N ALA G 339 " --> pdb=" O GLU G 335 " (cutoff:3.500A) removed outlier: 4.261A pdb=" N LYS G 344 " --> pdb=" O LYS G 340 " (cutoff:3.500A) removed outlier: 4.744A pdb=" N LEU G 347 " --> pdb=" O GLN G 343 " (cutoff:3.500A) Processing helix chain 'G' and resid 363 through 368 removed outlier: 3.666A pdb=" N ALA G 367 " --> pdb=" O THR G 363 " (cutoff:3.500A) removed outlier: 5.523A pdb=" N ARG G 368 " --> pdb=" O ALA G 364 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 363 through 368' Processing helix chain 'G' and resid 350 through 355 removed outlier: 4.267A pdb=" N ALA G 353 " --> pdb=" O PRO G 350 " (cutoff:3.500A) removed outlier: 4.668A pdb=" N VAL G 355 " --> pdb=" O SER G 352 " (cutoff:3.500A) Processing helix chain 'H' and resid 60 through 76 removed outlier: 3.938A pdb=" N ARG H 73 " --> pdb=" O LEU H 69 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N ARG H 74 " --> pdb=" O ALA H 70 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N MET H 75 " --> pdb=" O ILE H 71 " (cutoff:3.500A) Proline residue: H 76 - end of helix Processing helix chain 'H' and resid 104 through 111 removed outlier: 3.668A pdb=" N ASN H 108 " --> pdb=" O ALA H 104 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N ILE H 109 " --> pdb=" O GLY H 105 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N HIS H 110 " --> pdb=" O LYS H 106 " (cutoff:3.500A) removed outlier: 5.792A pdb=" N HIS H 111 " --> pdb=" O SER H 107 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 104 through 111' Processing helix chain 'H' and resid 136 through 146 removed outlier: 3.946A pdb=" N ILE H 141 " --> pdb=" O GLU H 137 " (cutoff:3.500A) removed outlier: 4.396A pdb=" N ALA H 144 " --> pdb=" O GLY H 140 " (cutoff:3.500A) removed outlier: 4.379A pdb=" N GLY H 145 " --> pdb=" O ILE H 141 " (cutoff:3.500A) Processing helix chain 'H' and resid 162 through 167 removed outlier: 3.646A pdb=" N VAL H 166 " --> pdb=" O ASP H 162 " (cutoff:3.500A) removed outlier: 3.920A pdb=" N PHE H 167 " --> pdb=" O GLU H 163 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 162 through 167' Processing helix chain 'I' and resid 62 through 81 removed outlier: 3.537A pdb=" N VAL I 74 " --> pdb=" O ALA I 70 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N GLU I 76 " --> pdb=" O ARG I 72 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N LEU I 77 " --> pdb=" O MET I 73 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N ARG I 79 " --> pdb=" O THR I 75 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N LYS I 80 " --> pdb=" O GLU I 76 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N ASP I 81 " --> pdb=" O LEU I 77 " (cutoff:3.500A) Processing helix chain 'I' and resid 87 through 107 Proline residue: I 91 - end of helix removed outlier: 4.058A pdb=" N ILE I 95 " --> pdb=" O PRO I 91 " (cutoff:3.500A) removed outlier: 4.043A pdb=" N LEU I 96 " --> pdb=" O ALA I 92 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N VAL I 101 " --> pdb=" O ALA I 97 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N ALA I 106 " --> pdb=" O GLU I 102 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N GLY I 107 " --> pdb=" O LEU I 103 " (cutoff:3.500A) Processing helix chain 'I' and resid 108 through 120 removed outlier: 3.686A pdb=" N GLN I 113 " --> pdb=" O THR I 109 " (cutoff:3.500A) removed outlier: 4.354A pdb=" N PHE I 118 " --> pdb=" O GLN I 114 " (cutoff:3.500A) removed outlier: 5.800A pdb=" N HIS I 120 " --> pdb=" O ALA I 116 " (cutoff:3.500A) Processing helix chain 'I' and resid 121 through 137 removed outlier: 4.077A pdb=" N VAL I 125 " --> pdb=" O ASP I 121 " (cutoff:3.500A) removed outlier: 4.192A pdb=" N PHE I 129 " --> pdb=" O VAL I 125 " (cutoff:3.500A) removed outlier: 4.466A pdb=" N ASP I 130 " --> pdb=" O ASP I 126 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N TYR I 132 " --> pdb=" O ALA I 128 " (cutoff:3.500A) Proline residue: I 133 - end of helix Processing helix chain 'I' and resid 167 through 172 removed outlier: 4.622A pdb=" N SER I 171 " --> pdb=" O ASN I 167 " (cutoff:3.500A) removed outlier: 5.215A pdb=" N ASP I 172 " --> pdb=" O ARG I 168 " (cutoff:3.500A) No H-bonds generated for 'chain 'I' and resid 167 through 172' Processing helix chain 'I' and resid 202 through 218 removed outlier: 3.619A pdb=" N ALA I 208 " --> pdb=" O HIS I 204 " (cutoff:3.500A) removed outlier: 4.260A pdb=" N ASP I 210 " --> pdb=" O GLN I 206 " (cutoff:3.500A) removed outlier: 3.557A pdb=" N ARG I 211 " --> pdb=" O MET I 207 " (cutoff:3.500A) removed outlier: 4.523A pdb=" N LYS I 215 " --> pdb=" O ARG I 211 " (cutoff:3.500A) removed outlier: 4.678A pdb=" N PHE I 216 " --> pdb=" O TRP I 212 " (cutoff:3.500A) removed outlier: 3.879A pdb=" N LYS I 217 " --> pdb=" O ALA I 213 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N THR I 218 " --> pdb=" O SER I 214 " (cutoff:3.500A) Processing helix chain 'I' and resid 219 through 236 removed outlier: 3.736A pdb=" N ALA I 230 " --> pdb=" O ARG I 226 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N ARG I 233 " --> pdb=" O HIS I 229 " (cutoff:3.500A) removed outlier: 3.967A pdb=" N GLY I 236 " --> pdb=" O LEU I 232 " (cutoff:3.500A) Processing helix chain 'I' and resid 242 through 247 removed outlier: 4.111A pdb=" N VAL I 246 " --> pdb=" O HIS I 242 " (cutoff:3.500A) removed outlier: 6.323A pdb=" N ASP I 247 " --> pdb=" O PRO I 243 " (cutoff:3.500A) No H-bonds generated for 'chain 'I' and resid 242 through 247' Processing helix chain 'I' and resid 251 through 263 removed outlier: 4.529A pdb=" N GLU I 257 " --> pdb=" O LYS I 253 " (cutoff:3.500A) removed outlier: 4.685A pdb=" N TRP I 258 " --> pdb=" O GLU I 254 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N ASN I 260 " --> pdb=" O GLU I 256 " (cutoff:3.500A) removed outlier: 4.550A pdb=" N LEU I 263 " --> pdb=" O HIS I 259 " (cutoff:3.500A) Processing helix chain 'J' and resid 10 through 15 Processing helix chain 'J' and resid 17 through 25 removed outlier: 5.064A pdb=" N SER J 22 " --> pdb=" O ASN J 18 " (cutoff:3.500A) removed outlier: 6.032A pdb=" N ARG J 23 " --> pdb=" O ALA J 19 " (cutoff:3.500A) removed outlier: 4.851A pdb=" N LEU J 24 " --> pdb=" O PHE J 20 " (cutoff:3.500A) Proline residue: J 25 - end of helix Processing helix chain 'J' and resid 26 through 41 removed outlier: 3.732A pdb=" N ALA J 32 " --> pdb=" O ARG J 28 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N ALA J 37 " --> pdb=" O LEU J 33 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N LYS J 40 " --> pdb=" O GLU J 36 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N GLY J 41 " --> pdb=" O ALA J 37 " (cutoff:3.500A) Processing helix chain 'J' and resid 49 through 55 removed outlier: 4.517A pdb=" N ILE J 53 " --> pdb=" O THR J 49 " (cutoff:3.500A) removed outlier: 6.873A pdb=" N ILE J 54 " --> pdb=" O LYS J 50 " (cutoff:3.500A) removed outlier: 6.084A pdb=" N GLY J 55 " --> pdb=" O GLU J 51 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 49 through 55' Processing helix chain 'J' and resid 121 through 140 removed outlier: 3.724A pdb=" N LEU J 126 " --> pdb=" O PHE J 122 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N LYS J 131 " --> pdb=" O ASP J 127 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N GLY J 139 " --> pdb=" O ALA J 135 " (cutoff:3.500A) removed outlier: 4.605A pdb=" N ARG J 140 " --> pdb=" O TRP J 136 " (cutoff:3.500A) Processing helix chain 'K' and resid 13 through 25 removed outlier: 4.752A pdb=" N ARG K 19 " --> pdb=" O ALA K 15 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N LEU K 20 " --> pdb=" O GLU K 16 " (cutoff:3.500A) removed outlier: 5.411A pdb=" N GLY K 22 " --> pdb=" O ASP K 18 " (cutoff:3.500A) removed outlier: 5.822A pdb=" N MET K 23 " --> pdb=" O ARG K 19 " (cutoff:3.500A) removed outlier: 4.511A pdb=" N LEU K 24 " --> pdb=" O LEU K 20 " (cutoff:3.500A) removed outlier: 5.429A pdb=" N ARG K 25 " --> pdb=" O ARG K 21 " (cutoff:3.500A) Processing helix chain 'K' and resid 26 through 32 removed outlier: 3.531A pdb=" N LEU K 30 " --> pdb=" O GLY K 26 " (cutoff:3.500A) removed outlier: 4.950A pdb=" N ARG K 32 " --> pdb=" O ALA K 28 " (cutoff:3.500A) Processing helix chain 'K' and resid 33 through 53 removed outlier: 3.868A pdb=" N LYS K 37 " --> pdb=" O LYS K 33 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N ARG K 44 " --> pdb=" O THR K 40 " (cutoff:3.500A) removed outlier: 3.775A pdb=" N ARG K 48 " --> pdb=" O ARG K 44 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N VAL K 51 " --> pdb=" O THR K 47 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N GLU K 52 " --> pdb=" O ARG K 48 " (cutoff:3.500A) Processing helix chain 'K' and resid 54 through 74 removed outlier: 4.904A pdb=" N ALA K 60 " --> pdb=" O HIS K 56 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N VAL K 62 " --> pdb=" O GLU K 58 " (cutoff:3.500A) removed outlier: 3.668A pdb=" N ARG K 63 " --> pdb=" O ARG K 59 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N GLU K 72 " --> pdb=" O SER K 68 " (cutoff:3.500A) removed outlier: 4.381A pdb=" N HIS K 73 " --> pdb=" O ALA K 69 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N GLY K 74 " --> pdb=" O ALA K 70 " (cutoff:3.500A) Processing helix chain 'K' and resid 76 through 88 removed outlier: 4.412A pdb=" N ASN K 82 " --> pdb=" O GLN K 78 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N ALA K 85 " --> pdb=" O ARG K 81 " (cutoff:3.500A) removed outlier: 3.942A pdb=" N GLN K 87 " --> pdb=" O ASP K 83 " (cutoff:3.500A) Processing helix chain 'K' and resid 92 through 102 removed outlier: 3.619A pdb=" N GLN K 98 " --> pdb=" O ARG K 94 " (cutoff:3.500A) Processing helix chain 'K' and resid 103 through 117 removed outlier: 5.071A pdb=" N ARG K 117 " --> pdb=" O LEU K 113 " (cutoff:3.500A) Processing helix chain 'K' and resid 131 through 136 removed outlier: 4.135A pdb=" N ALA K 135 " --> pdb=" O GLU K 131 " (cutoff:3.500A) removed outlier: 5.245A pdb=" N THR K 136 " --> pdb=" O GLU K 132 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 131 through 136' Processing helix chain 'K' and resid 145 through 162 removed outlier: 3.754A pdb=" N GLU K 153 " --> pdb=" O ARG K 149 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N ARG K 158 " --> pdb=" O GLU K 154 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N CYS K 161 " --> pdb=" O GLU K 157 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N THR K 162 " --> pdb=" O ARG K 158 " (cutoff:3.500A) Processing helix chain 'K' and resid 175 through 188 removed outlier: 4.419A pdb=" N TRP K 179 " --> pdb=" O THR K 175 " (cutoff:3.500A) removed outlier: 4.330A pdb=" N ASP K 181 " --> pdb=" O GLN K 177 " (cutoff:3.500A) removed outlier: 5.713A pdb=" N TRP K 183 " --> pdb=" O TRP K 179 " (cutoff:3.500A) removed outlier: 6.885A pdb=" N LYS K 184 " --> pdb=" O MET K 180 " (cutoff:3.500A) removed outlier: 4.451A pdb=" N GLU K 185 " --> pdb=" O ASP K 181 " (cutoff:3.500A) removed outlier: 4.396A pdb=" N TYR K 186 " --> pdb=" O ALA K 182 " (cutoff:3.500A) removed outlier: 5.201A pdb=" N LEU K 188 " --> pdb=" O LYS K 184 " (cutoff:3.500A) Processing helix chain 'L' and resid 6 through 18 removed outlier: 3.556A pdb=" N ALA L 10 " --> pdb=" O ASN L 6 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N LYS L 11 " --> pdb=" O PRO L 7 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N GLN L 14 " --> pdb=" O ALA L 10 " (cutoff:3.500A) Proline residue: L 15 - end of helix removed outlier: 3.911A pdb=" N GLU L 18 " --> pdb=" O GLN L 14 " (cutoff:3.500A) Processing helix chain 'L' and resid 166 through 172 removed outlier: 3.703A pdb=" N GLU L 170 " --> pdb=" O TRP L 166 " (cutoff:3.500A) removed outlier: 4.361A pdb=" N GLU L 171 " --> pdb=" O ASN L 167 " (cutoff:3.500A) removed outlier: 4.556A pdb=" N ALA L 172 " --> pdb=" O LYS L 168 " (cutoff:3.500A) No H-bonds generated for 'chain 'L' and resid 166 through 172' Processing helix chain 'M' and resid 110 through 129 removed outlier: 3.564A pdb=" N TYR M 114 " --> pdb=" O ASN M 110 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ARG M 117 " --> pdb=" O MET M 113 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLN M 123 " --> pdb=" O GLU M 119 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N GLN M 128 " --> pdb=" O LYS M 124 " (cutoff:3.500A) removed outlier: 5.092A pdb=" N LEU M 129 " --> pdb=" O ALA M 125 " (cutoff:3.500A) Processing helix chain 'M' and resid 142 through 154 removed outlier: 3.617A pdb=" N ILE M 148 " --> pdb=" O LYS M 144 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N GLU M 149 " --> pdb=" O LYS M 145 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N LEU M 150 " --> pdb=" O LEU M 146 " (cutoff:3.500A) removed outlier: 4.307A pdb=" N VAL M 152 " --> pdb=" O ILE M 148 " (cutoff:3.500A) removed outlier: 4.797A pdb=" N LEU M 153 " --> pdb=" O GLU M 149 " (cutoff:3.500A) Processing helix chain 'M' and resid 157 through 169 removed outlier: 3.674A pdb=" N ALA M 163 " --> pdb=" O ARG M 159 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N LYS M 166 " --> pdb=" O MET M 162 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N SER M 168 " --> pdb=" O GLN M 164 " (cutoff:3.500A) Proline residue: M 169 - end of helix Processing helix chain 'M' and resid 170 through 191 removed outlier: 3.739A pdb=" N MET M 174 " --> pdb=" O ARG M 170 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N GLN M 184 " --> pdb=" O LEU M 180 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N GLN M 185 " --> pdb=" O GLU M 181 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N GLY M 189 " --> pdb=" O GLN M 185 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N GLY M 191 " --> pdb=" O ALA M 187 " (cutoff:3.500A) Processing helix chain 'M' and resid 251 through 256 removed outlier: 5.134A pdb=" N MET M 255 " --> pdb=" O TYR M 251 " (cutoff:3.500A) removed outlier: 4.838A pdb=" N THR M 256 " --> pdb=" O ALA M 252 " (cutoff:3.500A) No H-bonds generated for 'chain 'M' and resid 251 through 256' Processing helix chain 'M' and resid 72 through 78 removed outlier: 4.090A pdb=" N LEU M 77 " --> pdb=" O LEU M 72 " (cutoff:3.500A) Proline residue: M 78 - end of helix No H-bonds generated for 'chain 'M' and resid 72 through 78' Processing helix chain 'N' and resid 56 through 65 removed outlier: 4.876A pdb=" N SER N 62 " --> pdb=" O ASN N 58 " (cutoff:3.500A) removed outlier: 5.113A pdb=" N ARG N 63 " --> pdb=" O LEU N 59 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N MET N 64 " --> pdb=" O TRP N 60 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N GLY N 65 " --> pdb=" O ARG N 61 " (cutoff:3.500A) Processing helix chain 'N' and resid 72 through 77 removed outlier: 4.371A pdb=" N TYR N 76 " --> pdb=" O THR N 72 " (cutoff:3.500A) removed outlier: 5.034A pdb=" N ASN N 77 " --> pdb=" O THR N 73 " (cutoff:3.500A) No H-bonds generated for 'chain 'N' and resid 72 through 77' Processing helix chain 'N' and resid 107 through 119 removed outlier: 3.889A pdb=" N LEU N 111 " --> pdb=" O GLY N 107 " (cutoff:3.500A) removed outlier: 3.969A pdb=" N GLU N 117 " --> pdb=" O ASN N 113 " (cutoff:3.500A) Processing helix chain 'N' and resid 128 through 135 removed outlier: 3.651A pdb=" N SER N 134 " --> pdb=" O GLY N 130 " (cutoff:3.500A) Proline residue: N 135 - end of helix Processing helix chain 'N' and resid 137 through 146 removed outlier: 3.531A pdb=" N SER N 143 " --> pdb=" O PRO N 139 " (cutoff:3.500A) Processing helix chain 'N' and resid 154 through 159 removed outlier: 4.221A pdb=" N VAL N 158 " --> pdb=" O VAL N 154 " (cutoff:3.500A) Processing helix chain 'N' and resid 175 through 186 Processing helix chain 'O' and resid 32 through 39 removed outlier: 3.508A pdb=" N PHE O 36 " --> pdb=" O THR O 32 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N TYR O 37 " --> pdb=" O ARG O 33 " (cutoff:3.500A) removed outlier: 4.667A pdb=" N LYS O 38 " --> pdb=" O SER O 34 " (cutoff:3.500A) removed outlier: 4.456A pdb=" N ARG O 39 " --> pdb=" O ARG O 35 " (cutoff:3.500A) No H-bonds generated for 'chain 'O' and resid 32 through 39' Processing helix chain 'O' and resid 52 through 57 Proline residue: O 57 - end of helix Processing helix chain 'O' and resid 60 through 66 removed outlier: 3.842A pdb=" N LEU O 64 " --> pdb=" O LYS O 60 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N LYS O 65 " --> pdb=" O PRO O 61 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N GLY O 66 " --> pdb=" O GLY O 62 " (cutoff:3.500A) No H-bonds generated for 'chain 'O' and resid 60 through 66' Processing helix chain 'O' and resid 77 through 89 removed outlier: 5.439A pdb=" N GLU O 82 " --> pdb=" O ARG O 78 " (cutoff:3.500A) removed outlier: 5.261A pdb=" N LEU O 83 " --> pdb=" O GLU O 79 " (cutoff:3.500A) removed outlier: 6.504A pdb=" N HIS O 89 " --> pdb=" O GLU O 85 " (cutoff:3.500A) Processing helix chain 'O' and resid 111 through 123 removed outlier: 3.607A pdb=" N ALA O 119 " --> pdb=" O LYS O 115 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N TYR O 122 " --> pdb=" O ILE O 118 " (cutoff:3.500A) Proline residue: O 123 - end of helix Processing helix chain 'O' and resid 196 through 201 removed outlier: 4.733A pdb=" N VAL O 200 " --> pdb=" O SER O 196 " (cutoff:3.500A) removed outlier: 4.998A pdb=" N ARG O 201 " --> pdb=" O VAL O 197 " (cutoff:3.500A) No H-bonds generated for 'chain 'O' and resid 196 through 201' Processing helix chain 'O' and resid 258 through 264 removed outlier: 4.224A pdb=" N GLU O 264 " --> pdb=" O GLN O 260 " (cutoff:3.500A) Processing helix chain 'O' and resid 268 through 273 Processing helix chain 'O' and resid 279 through 300 removed outlier: 3.839A pdb=" N TYR O 287 " --> pdb=" O ALA O 283 " (cutoff:3.500A) removed outlier: 3.684A pdb=" N ASP O 290 " --> pdb=" O ASN O 286 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N LYS O 294 " --> pdb=" O ASP O 290 " (cutoff:3.500A) removed outlier: 3.892A pdb=" N TYR O 298 " --> pdb=" O LYS O 294 " (cutoff:3.500A) Processing helix chain 'O' and resid 303 through 308 Processing helix chain 'O' and resid 310 through 325 removed outlier: 3.708A pdb=" N LEU O 318 " --> pdb=" O GLN O 314 " (cutoff:3.500A) removed outlier: 4.042A pdb=" N LEU O 325 " --> pdb=" O ALA O 321 " (cutoff:3.500A) Processing helix chain 'P' and resid 106 through 124 removed outlier: 3.993A pdb=" N VAL P 110 " --> pdb=" O ASP P 106 " (cutoff:3.500A) removed outlier: 4.071A pdb=" N SER P 113 " --> pdb=" O LYS P 109 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N MET P 116 " --> pdb=" O ARG P 112 " (cutoff:3.500A) removed outlier: 3.887A pdb=" N ALA P 122 " --> pdb=" O ALA P 118 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N ARG P 123 " --> pdb=" O ALA P 119 " (cutoff:3.500A) Processing helix chain 'P' and resid 136 through 145 removed outlier: 3.603A pdb=" N ASP P 141 " --> pdb=" O ARG P 137 " (cutoff:3.500A) removed outlier: 4.509A pdb=" N HIS P 142 " --> pdb=" O ALA P 138 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N THR P 144 " --> pdb=" O LEU P 140 " (cutoff:3.500A) Processing helix chain 'P' and resid 147 through 154 Processing helix chain 'P' and resid 157 through 163 removed outlier: 3.868A pdb=" N PHE P 162 " --> pdb=" O ALA P 158 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N GLN P 163 " --> pdb=" O THR P 159 " (cutoff:3.500A) Processing helix chain 'P' and resid 164 through 171 removed outlier: 3.667A pdb=" N PHE P 168 " --> pdb=" O ASP P 164 " (cutoff:3.500A) Processing helix chain 'Q' and resid 29 through 38 removed outlier: 3.591A pdb=" N ARG Q 33 " --> pdb=" O GLY Q 29 " (cutoff:3.500A) removed outlier: 3.897A pdb=" N MET Q 37 " --> pdb=" O ARG Q 33 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N GLY Q 38 " --> pdb=" O TYR Q 34 " (cutoff:3.500A) Processing helix chain 'Q' and resid 41 through 46 removed outlier: 5.210A pdb=" N TRP Q 45 " --> pdb=" O PRO Q 41 " (cutoff:3.500A) removed outlier: 4.201A pdb=" N CYS Q 46 " --> pdb=" O TRP Q 42 " (cutoff:3.500A) No H-bonds generated for 'chain 'Q' and resid 41 through 46' Processing helix chain 'Q' and resid 50 through 59 removed outlier: 3.870A pdb=" N ASP Q 59 " --> pdb=" O TYR Q 55 " (cutoff:3.500A) Processing helix chain 'Q' and resid 123 through 134 removed outlier: 4.287A pdb=" N GLU Q 131 " --> pdb=" O MET Q 127 " (cutoff:3.500A) Processing helix chain 'Q' and resid 135 through 144 removed outlier: 3.865A pdb=" N PHE Q 139 " --> pdb=" O GLY Q 135 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N ARG Q 143 " --> pdb=" O PHE Q 139 " (cutoff:3.500A) removed outlier: 5.368A pdb=" N SER Q 144 " --> pdb=" O ILE Q 140 " (cutoff:3.500A) Processing helix chain 'Q' and resid 150 through 189 removed outlier: 4.469A pdb=" N GLU Q 154 " --> pdb=" O SER Q 150 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N ARG Q 158 " --> pdb=" O GLU Q 154 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N HIS Q 159 " --> pdb=" O ARG Q 155 " (cutoff:3.500A) removed outlier: 4.057A pdb=" N THR Q 167 " --> pdb=" O ARG Q 163 " (cutoff:3.500A) removed outlier: 4.285A pdb=" N ASP Q 174 " --> pdb=" O ASN Q 170 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N ALA Q 179 " --> pdb=" O GLN Q 175 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ALA Q 186 " --> pdb=" O GLU Q 182 " (cutoff:3.500A) removed outlier: 4.334A pdb=" N GLU Q 187 " --> pdb=" O VAL Q 183 " (cutoff:3.500A) Processing helix chain 'Q' and resid 193 through 205 removed outlier: 3.839A pdb=" N ASP Q 198 " --> pdb=" O GLU Q 194 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N ALA Q 199 " --> pdb=" O GLU Q 195 " (cutoff:3.500A) Processing helix chain 'Q' and resid 207 through 226 removed outlier: 4.109A pdb=" N ARG Q 213 " --> pdb=" O GLU Q 209 " (cutoff:3.500A) removed outlier: 4.212A pdb=" N VAL Q 226 " --> pdb=" O GLN Q 222 " (cutoff:3.500A) Processing helix chain 'R' and resid 9 through 18 removed outlier: 3.782A pdb=" N LEU R 13 " --> pdb=" O ASN R 9 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N TYR R 14 " --> pdb=" O VAL R 10 " (cutoff:3.500A) removed outlier: 4.292A pdb=" N GLU R 15 " --> pdb=" O ALA R 11 " (cutoff:3.500A) removed outlier: 4.218A pdb=" N PHE R 16 " --> pdb=" O ALA R 12 " (cutoff:3.500A) removed outlier: 3.920A pdb=" N VAL R 17 " --> pdb=" O LEU R 13 " (cutoff:3.500A) removed outlier: 4.822A pdb=" N ASP R 18 " --> pdb=" O TYR R 14 " (cutoff:3.500A) No H-bonds generated for 'chain 'R' and resid 9 through 18' Processing helix chain 'R' and resid 19 through 24 Processing helix chain 'R' and resid 35 through 43 removed outlier: 4.157A pdb=" N ARG R 41 " --> pdb=" O GLU R 37 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N LYS R 42 " --> pdb=" O SER R 38 " (cutoff:3.500A) removed outlier: 5.278A pdb=" N SER R 43 " --> pdb=" O LEU R 39 " (cutoff:3.500A) Processing helix chain 'R' and resid 44 through 72 removed outlier: 3.797A pdb=" N GLN R 48 " --> pdb=" O LEU R 44 " (cutoff:3.500A) removed outlier: 4.376A pdb=" N GLN R 49 " --> pdb=" O ALA R 45 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N SER R 53 " --> pdb=" O GLN R 49 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N LEU R 54 " --> pdb=" O ILE R 50 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N MET R 60 " --> pdb=" O LYS R 56 " (cutoff:3.500A) removed outlier: 4.151A pdb=" N ILE R 64 " --> pdb=" O MET R 60 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N HIS R 67 " --> pdb=" O THR R 63 " (cutoff:3.500A) Processing helix chain 'R' and resid 81 through 120 removed outlier: 4.240A pdb=" N LYS R 85 " --> pdb=" O PRO R 81 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N SER R 90 " --> pdb=" O MET R 86 " (cutoff:3.500A) removed outlier: 3.643A pdb=" N ASN R 93 " --> pdb=" O GLU R 89 " (cutoff:3.500A) removed outlier: 4.132A pdb=" N THR R 106 " --> pdb=" O ASP R 102 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N GLU R 115 " --> pdb=" O ARG R 111 " (cutoff:3.500A) removed outlier: 4.262A pdb=" N ALA R 118 " --> pdb=" O LYS R 114 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N LYS R 119 " --> pdb=" O GLU R 115 " (cutoff:3.500A) Processing helix chain 'R' and resid 150 through 158 removed outlier: 3.571A pdb=" N LEU R 157 " --> pdb=" O ARG R 153 " (cutoff:3.500A) Processing helix chain 'R' and resid 178 through 206 removed outlier: 3.591A pdb=" N ARG R 186 " --> pdb=" O LEU R 182 " (cutoff:3.500A) removed outlier: 3.905A pdb=" N ALA R 188 " --> pdb=" O GLN R 184 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N TRP R 192 " --> pdb=" O ALA R 188 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N GLU R 198 " --> pdb=" O GLN R 194 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N ASN R 201 " --> pdb=" O ALA R 197 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N GLU R 203 " --> pdb=" O ARG R 199 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N GLU R 204 " --> pdb=" O ARG R 200 " (cutoff:3.500A) Processing helix chain 'R' and resid 220 through 225 removed outlier: 3.934A pdb=" N HIS R 224 " --> pdb=" O SER R 220 " (cutoff:3.500A) removed outlier: 3.786A pdb=" N THR R 225 " --> pdb=" O VAL R 221 " (cutoff:3.500A) No H-bonds generated for 'chain 'R' and resid 220 through 225' Processing helix chain 'R' and resid 241 through 250 removed outlier: 3.507A pdb=" N VAL R 248 " --> pdb=" O GLU R 244 " (cutoff:3.500A) removed outlier: 3.997A pdb=" N ASP R 249 " --> pdb=" O SER R 245 " (cutoff:3.500A) removed outlier: 4.718A pdb=" N ASP R 250 " --> pdb=" O ASN R 246 " (cutoff:3.500A) Processing helix chain 'R' and resid 260 through 265 removed outlier: 4.221A pdb=" N LEU R 264 " --> pdb=" O GLN R 260 " (cutoff:3.500A) Proline residue: R 265 - end of helix No H-bonds generated for 'chain 'R' and resid 260 through 265' Processing helix chain 'R' and resid 278 through 288 removed outlier: 3.773A pdb=" N GLN R 286 " --> pdb=" O HIS R 282 " (cutoff:3.500A) Processing helix chain 'R' and resid 289 through 294 removed outlier: 3.736A pdb=" N ALA R 294 " --> pdb=" O VAL R 290 " (cutoff:3.500A) Processing helix chain 'R' and resid 313 through 318 removed outlier: 3.768A pdb=" N VAL R 317 " --> pdb=" O LYS R 313 " (cutoff:3.500A) Proline residue: R 318 - end of helix No H-bonds generated for 'chain 'R' and resid 313 through 318' Processing helix chain 'R' and resid 322 through 327 removed outlier: 3.732A pdb=" N ILE R 326 " --> pdb=" O HIS R 322 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N GLU R 327 " --> pdb=" O PRO R 323 " (cutoff:3.500A) No H-bonds generated for 'chain 'R' and resid 322 through 327' Processing helix chain 'R' and resid 340 through 349 removed outlier: 3.522A pdb=" N LEU R 348 " --> pdb=" O TYR R 344 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N SER R 349 " --> pdb=" O VAL R 345 " (cutoff:3.500A) Processing helix chain 'R' and resid 371 through 376 removed outlier: 4.395A pdb=" N VAL R 375 " --> pdb=" O PRO R 371 " (cutoff:3.500A) Processing helix chain 'R' and resid 377 through 396 removed outlier: 3.885A pdb=" N ALA R 382 " --> pdb=" O VAL R 378 " (cutoff:3.500A) removed outlier: 3.677A pdb=" N ALA R 388 " --> pdb=" O ARG R 384 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N GLN R 389 " --> pdb=" O ARG R 385 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N MET R 394 " --> pdb=" O GLU R 390 " (cutoff:3.500A) Processing helix chain 'R' and resid 403 through 411 removed outlier: 4.178A pdb=" N ASP R 407 " --> pdb=" O LYS R 403 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N LEU R 408 " --> pdb=" O TYR R 404 " (cutoff:3.500A) removed outlier: 4.141A pdb=" N LYS R 411 " --> pdb=" O ASP R 407 " (cutoff:3.500A) Processing helix chain 'R' and resid 413 through 422 removed outlier: 3.630A pdb=" N VAL R 418 " --> pdb=" O LEU R 414 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N GLN R 419 " --> pdb=" O ALA R 415 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N ASN R 421 " --> pdb=" O VAL R 417 " (cutoff:3.500A) Processing helix chain 'R' and resid 423 through 436 removed outlier: 5.056A pdb=" N ASP R 427 " --> pdb=" O SER R 423 " (cutoff:3.500A) removed outlier: 4.042A pdb=" N ASP R 430 " --> pdb=" O VAL R 426 " (cutoff:3.500A) removed outlier: 3.882A pdb=" N LEU R 434 " --> pdb=" O ASP R 430 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N LEU R 435 " --> pdb=" O ARG R 431 " (cutoff:3.500A) Processing helix chain 'R' and resid 453 through 458 Proline residue: R 458 - end of helix Processing helix chain 'S' and resid 265 through 270 removed outlier: 4.710A pdb=" N PHE S 269 " --> pdb=" O HIS S 265 " (cutoff:3.500A) removed outlier: 5.264A pdb=" N SER S 270 " --> pdb=" O PRO S 266 " (cutoff:3.500A) No H-bonds generated for 'chain 'S' and resid 265 through 270' Processing helix chain 'S' and resid 271 through 281 Processing helix chain 'S' and resid 294 through 305 removed outlier: 3.734A pdb=" N ARG S 300 " --> pdb=" O PRO S 296 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N VAL S 304 " --> pdb=" O ARG S 300 " (cutoff:3.500A) Processing helix chain 'S' and resid 314 through 323 removed outlier: 3.514A pdb=" N ALA S 320 " --> pdb=" O ASP S 316 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N LEU S 321 " --> pdb=" O GLU S 317 " (cutoff:3.500A) removed outlier: 4.601A pdb=" N GLY S 323 " --> pdb=" O LYS S 319 " (cutoff:3.500A) Processing helix chain 'S' and resid 329 through 338 removed outlier: 4.021A pdb=" N LEU S 333 " --> pdb=" O SER S 329 " (cutoff:3.500A) removed outlier: 4.342A pdb=" N GLY S 335 " --> pdb=" O ARG S 331 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N GLN S 336 " --> pdb=" O ASP S 332 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N ILE S 337 " --> pdb=" O LEU S 333 " (cutoff:3.500A) Proline residue: S 338 - end of helix Processing helix chain 'S' and resid 349 through 392 removed outlier: 3.698A pdb=" N PHE S 358 " --> pdb=" O SER S 354 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N MET S 359 " --> pdb=" O LYS S 355 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N ARG S 360 " --> pdb=" O MET S 356 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N MET S 364 " --> pdb=" O ARG S 360 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ARG S 365 " --> pdb=" O LEU S 361 " (cutoff:3.500A) removed outlier: 3.522A pdb=" N HIS S 371 " --> pdb=" O ARG S 367 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N GLN S 374 " --> pdb=" O MET S 370 " (cutoff:3.500A) removed outlier: 3.648A pdb=" N GLU S 376 " --> pdb=" O ARG S 372 " (cutoff:3.500A) removed outlier: 3.631A pdb=" N ARG S 378 " --> pdb=" O GLN S 374 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLN S 391 " --> pdb=" O LEU S 387 " (cutoff:3.500A) removed outlier: 4.362A pdb=" N GLN S 392 " --> pdb=" O GLN S 388 " (cutoff:3.500A) Processing helix chain 'T' and resid 34 through 44 removed outlier: 3.618A pdb=" N ARG T 40 " --> pdb=" O MET T 36 " (cutoff:3.500A) removed outlier: 3.943A pdb=" N LYS T 41 " --> pdb=" O GLN T 37 " (cutoff:3.500A) removed outlier: 4.431A pdb=" N THR T 42 " --> pdb=" O LEU T 38 " (cutoff:3.500A) removed outlier: 4.126A pdb=" N TYR T 43 " --> pdb=" O ARG T 39 " (cutoff:3.500A) removed outlier: 4.130A pdb=" N GLY T 44 " --> pdb=" O ARG T 40 " (cutoff:3.500A) Processing helix chain 'T' and resid 45 through 51 removed outlier: 3.508A pdb=" N GLU T 49 " --> pdb=" O LEU T 45 " (cutoff:3.500A) Processing helix chain 'T' and resid 75 through 82 removed outlier: 3.513A pdb=" N ILE T 81 " --> pdb=" O ASP T 77 " (cutoff:3.500A) removed outlier: 4.304A pdb=" N LYS T 82 " --> pdb=" O CYS T 78 " (cutoff:3.500A) Processing helix chain 'U' and resid 56 through 61 removed outlier: 3.901A pdb=" N LEU U 61 " --> pdb=" O GLU U 57 " (cutoff:3.500A) Processing helix chain 'V' and resid 13 through 20 removed outlier: 5.593A pdb=" N ILE V 17 " --> pdb=" O GLY V 13 " (cutoff:3.500A) removed outlier: 5.314A pdb=" N THR V 18 " --> pdb=" O CYS V 14 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N ARG V 19 " --> pdb=" O GLU V 15 " (cutoff:3.500A) removed outlier: 5.157A pdb=" N GLN V 20 " --> pdb=" O GLU V 16 " (cutoff:3.500A) No H-bonds generated for 'chain 'V' and resid 13 through 20' Processing helix chain 'V' and resid 37 through 43 removed outlier: 4.131A pdb=" N ARG V 43 " --> pdb=" O VAL V 39 " (cutoff:3.500A) Processing helix chain 'V' and resid 70 through 79 removed outlier: 4.863A pdb=" N ASP V 75 " --> pdb=" O ILE V 71 " (cutoff:3.500A) removed outlier: 4.557A pdb=" N MET V 76 " --> pdb=" O ASP V 72 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N ARG V 77 " --> pdb=" O VAL V 73 " (cutoff:3.500A) removed outlier: 5.574A pdb=" N TYR V 78 " --> pdb=" O LYS V 74 " (cutoff:3.500A) removed outlier: 4.250A pdb=" N TYR V 79 " --> pdb=" O ASP V 75 " (cutoff:3.500A) Processing helix chain 'V' and resid 84 through 96 removed outlier: 4.015A pdb=" N LEU V 90 " --> pdb=" O GLN V 86 " (cutoff:3.500A) removed outlier: 3.982A pdb=" N ARG V 94 " --> pdb=" O LEU V 90 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N LEU V 95 " --> pdb=" O TYR V 91 " (cutoff:3.500A) Processing helix chain 'V' and resid 113 through 123 removed outlier: 3.510A pdb=" N ILE V 117 " --> pdb=" O THR V 113 " (cutoff:3.500A) removed outlier: 4.118A pdb=" N GLY V 118 " --> pdb=" O ASN V 114 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N SER V 121 " --> pdb=" O ILE V 117 " (cutoff:3.500A) removed outlier: 4.143A pdb=" N LEU V 123 " --> pdb=" O GLN V 119 " (cutoff:3.500A) Processing helix chain 'V' and resid 124 through 130 removed outlier: 4.199A pdb=" N GLU V 127 " --> pdb=" O LYS V 124 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N ARG V 128 " --> pdb=" O GLU V 125 " (cutoff:3.500A) removed outlier: 5.445A pdb=" N SER V 130 " --> pdb=" O GLU V 127 " (cutoff:3.500A) Processing helix chain 'X' and resid 44 through 58 Proline residue: X 58 - end of helix Processing helix chain 'X' and resid 76 through 81 removed outlier: 3.611A pdb=" N PHE X 80 " --> pdb=" O SER X 76 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N GLU X 81 " --> pdb=" O ASP X 77 " (cutoff:3.500A) No H-bonds generated for 'chain 'X' and resid 76 through 81' Processing helix chain 'X' and resid 91 through 96 removed outlier: 4.232A pdb=" N PHE X 95 " --> pdb=" O THR X 91 " (cutoff:3.500A) Processing helix chain 'X' and resid 108 through 115 removed outlier: 5.580A pdb=" N PHE X 112 " --> pdb=" O ASN X 108 " (cutoff:3.500A) removed outlier: 4.798A pdb=" N ASP X 113 " --> pdb=" O ALA X 109 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N ARG X 114 " --> pdb=" O THR X 110 " (cutoff:3.500A) removed outlier: 6.413A pdb=" N THR X 115 " --> pdb=" O ASP X 111 " (cutoff:3.500A) No H-bonds generated for 'chain 'X' and resid 108 through 115' Processing helix chain 'X' and resid 124 through 129 removed outlier: 3.877A pdb=" N LEU X 128 " --> pdb=" O ASP X 124 " (cutoff:3.500A) removed outlier: 5.589A pdb=" N VAL X 129 " --> pdb=" O HIS X 125 " (cutoff:3.500A) No H-bonds generated for 'chain 'X' and resid 124 through 129' Processing helix chain 'X' and resid 134 through 152 Processing helix chain 'X' and resid 199 through 204 removed outlier: 4.522A pdb=" N TRP X 204 " --> pdb=" O PRO X 200 " (cutoff:3.500A) Processing helix chain 'X' and resid 214 through 220 removed outlier: 3.750A pdb=" N VAL X 218 " --> pdb=" O GLU X 214 " (cutoff:3.500A) removed outlier: 5.242A pdb=" N GLN X 220 " --> pdb=" O THR X 216 " (cutoff:3.500A) Processing helix chain 'X' and resid 242 through 248 removed outlier: 6.158A pdb=" N ALA X 247 " --> pdb=" O ALA X 243 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N ASN X 248 " --> pdb=" O GLY X 244 " (cutoff:3.500A) Processing helix chain 'X' and resid 273 through 280 removed outlier: 5.033A pdb=" N HIS X 279 " --> pdb=" O LEU X 275 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N LYS X 280 " --> pdb=" O GLN X 276 " (cutoff:3.500A) Processing helix chain 'X' and resid 364 through 371 removed outlier: 5.724A pdb=" N ARG X 368 " --> pdb=" O PRO X 364 " (cutoff:3.500A) removed outlier: 5.376A pdb=" N SER X 369 " --> pdb=" O LEU X 365 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N ASN X 370 " --> pdb=" O ALA X 366 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N TYR X 371 " --> pdb=" O GLN X 367 " (cutoff:3.500A) No H-bonds generated for 'chain 'X' and resid 364 through 371' Processing helix chain 'X' and resid 379 through 384 Processing helix chain 'X' and resid 387 through 392 removed outlier: 3.604A pdb=" N THR X 391 " --> pdb=" O PRO X 387 " (cutoff:3.500A) Processing helix chain 'X' and resid 399 through 405 removed outlier: 3.578A pdb=" N ALA X 403 " --> pdb=" O SER X 399 " (cutoff:3.500A) Proline residue: X 405 - end of helix Processing helix chain 'X' and resid 419 through 430 removed outlier: 3.983A pdb=" N GLN X 423 " --> pdb=" O ASP X 419 " (cutoff:3.500A) Processing helix chain 'X' and resid 439 through 451 removed outlier: 3.512A pdb=" N ALA X 444 " --> pdb=" O GLU X 440 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N LEU X 446 " --> pdb=" O ILE X 442 " (cutoff:3.500A) removed outlier: 4.497A pdb=" N MET X 451 " --> pdb=" O GLU X 447 " (cutoff:3.500A) Processing helix chain 'X' and resid 452 through 458 removed outlier: 4.037A pdb=" N LEU X 456 " --> pdb=" O ARG X 452 " (cutoff:3.500A) removed outlier: 6.067A pdb=" N VAL X 458 " --> pdb=" O GLU X 454 " (cutoff:3.500A) Processing helix chain 'X' and resid 473 through 478 removed outlier: 3.872A pdb=" N TRP X 477 " --> pdb=" O ASP X 473 " (cutoff:3.500A) removed outlier: 5.326A pdb=" N ALA X 478 " --> pdb=" O PRO X 474 " (cutoff:3.500A) No H-bonds generated for 'chain 'X' and resid 473 through 478' Processing helix chain 'X' and resid 497 through 502 removed outlier: 4.177A pdb=" N THR X 501 " --> pdb=" O SER X 497 " (cutoff:3.500A) removed outlier: 3.907A pdb=" N MET X 502 " --> pdb=" O ARG X 498 " (cutoff:3.500A) No H-bonds generated for 'chain 'X' and resid 497 through 502' Processing helix chain 'X' and resid 373 through 378 removed outlier: 4.233A pdb=" N ALA X 376 " --> pdb=" O LEU X 373 " (cutoff:3.500A) Processing helix chain 'X' and resid 302 through 308 removed outlier: 3.567A pdb=" N VAL X 308 " --> pdb=" O VAL X 303 " (cutoff:3.500A) Processing helix chain 'Y' and resid 36 through 49 removed outlier: 4.049A pdb=" N TRP Y 40 " --> pdb=" O ASN Y 36 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N GLU Y 46 " --> pdb=" O GLN Y 42 " (cutoff:3.500A) removed outlier: 3.947A pdb=" N TYR Y 47 " --> pdb=" O ALA Y 43 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N ILE Y 48 " --> pdb=" O ALA Y 44 " (cutoff:3.500A) removed outlier: 4.197A pdb=" N HIS Y 49 " --> pdb=" O MET Y 45 " (cutoff:3.500A) Processing helix chain 'Y' and resid 61 through 107 removed outlier: 4.075A pdb=" N ASP Y 65 " --> pdb=" O GLN Y 61 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N GLN Y 66 " --> pdb=" O GLN Y 62 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N ASN Y 72 " --> pdb=" O ARG Y 68 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N TYR Y 77 " --> pdb=" O ALA Y 73 " (cutoff:3.500A) removed outlier: 4.602A pdb=" N VAL Y 80 " --> pdb=" O ARG Y 76 " (cutoff:3.500A) removed outlier: 3.934A pdb=" N SER Y 81 " --> pdb=" O TYR Y 77 " (cutoff:3.500A) removed outlier: 3.943A pdb=" N PHE Y 85 " --> pdb=" O SER Y 81 " (cutoff:3.500A) removed outlier: 4.201A pdb=" N ARG Y 88 " --> pdb=" O LYS Y 84 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N ALA Y 94 " --> pdb=" O SER Y 90 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N GLU Y 102 " --> pdb=" O GLU Y 98 " (cutoff:3.500A) removed outlier: 4.006A pdb=" N GLY Y 107 " --> pdb=" O MET Y 103 " (cutoff:3.500A) Processing helix chain 'Y' and resid 108 through 116 Processing helix chain 'Y' and resid 147 through 152 removed outlier: 3.614A pdb=" N ARG Y 151 " --> pdb=" O VAL Y 147 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N SER Y 152 " --> pdb=" O PRO Y 148 " (cutoff:3.500A) No H-bonds generated for 'chain 'Y' and resid 147 through 152' Processing helix chain 'Y' and resid 164 through 169 removed outlier: 3.598A pdb=" N GLU Y 168 " --> pdb=" O THR Y 164 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N PHE Y 169 " --> pdb=" O ASP Y 165 " (cutoff:3.500A) No H-bonds generated for 'chain 'Y' and resid 164 through 169' Processing helix chain 'Y' and resid 181 through 206 removed outlier: 3.630A pdb=" N ILE Y 185 " --> pdb=" O ASP Y 181 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N ALA Y 190 " --> pdb=" O GLU Y 186 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N ALA Y 194 " --> pdb=" O ALA Y 190 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N GLU Y 197 " --> pdb=" O GLU Y 193 " (cutoff:3.500A) removed outlier: 4.570A pdb=" N GLU Y 198 " --> pdb=" O ALA Y 194 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N GLY Y 201 " --> pdb=" O GLU Y 197 " (cutoff:3.500A) removed outlier: 3.535A pdb=" N VAL Y 202 " --> pdb=" O GLU Y 198 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N ARG Y 204 " --> pdb=" O HIS Y 200 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N GLU Y 205 " --> pdb=" O GLY Y 201 " (cutoff:3.500A) Processing helix chain 'Y' and resid 211 through 241 removed outlier: 3.559A pdb=" N ALA Y 219 " --> pdb=" O GLU Y 215 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N TYR Y 220 " --> pdb=" O GLY Y 216 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N HIS Y 224 " --> pdb=" O TYR Y 220 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N ALA Y 229 " --> pdb=" O ARG Y 225 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N ASP Y 236 " --> pdb=" O HIS Y 232 " (cutoff:3.500A) removed outlier: 3.740A pdb=" N ASP Y 240 " --> pdb=" O ASP Y 236 " (cutoff:3.500A) Proline residue: Y 241 - end of helix Processing helix chain 'Y' and resid 242 through 250 removed outlier: 4.183A pdb=" N LYS Y 246 " --> pdb=" O GLU Y 242 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N ASP Y 250 " --> pdb=" O LYS Y 246 " (cutoff:3.500A) Processing helix chain 'Y' and resid 251 through 262 removed outlier: 3.826A pdb=" N GLU Y 259 " --> pdb=" O ALA Y 255 " (cutoff:3.500A) Processing helix chain 'Z' and resid 50 through 56 removed outlier: 4.000A pdb=" N ASP Z 54 " --> pdb=" O PRO Z 50 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N GLY Z 56 " --> pdb=" O TRP Z 52 " (cutoff:3.500A) Processing helix chain 'Z' and resid 82 through 95 Proline residue: Z 87 - end of helix removed outlier: 3.621A pdb=" N ASN Z 91 " --> pdb=" O PRO Z 87 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N MET Z 93 " --> pdb=" O VAL Z 89 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N GLN Z 95 " --> pdb=" O ASN Z 91 " (cutoff:3.500A) Processing helix chain 'Z' and resid 114 through 119 Proline residue: Z 119 - end of helix Processing helix chain 'Z' and resid 135 through 140 removed outlier: 4.875A pdb=" N ILE Z 139 " --> pdb=" O ASP Z 135 " (cutoff:3.500A) removed outlier: 5.010A pdb=" N ARG Z 140 " --> pdb=" O PRO Z 136 " (cutoff:3.500A) No H-bonds generated for 'chain 'Z' and resid 135 through 140' Processing helix chain 'Z' and resid 41 through 46 removed outlier: 4.572A pdb=" N LEU Z 44 " --> pdb=" O LYS Z 41 " (cutoff:3.500A) removed outlier: 6.181A pdb=" N GLU Z 46 " --> pdb=" O ILE Z 43 " (cutoff:3.500A) Processing helix chain 'BA' and resid 14 through 20 removed outlier: 4.245A pdb=" N ARGBA 18 " --> pdb=" O ASNBA 14 " (cutoff:3.500A) removed outlier: 5.988A pdb=" N TYRBA 19 " --> pdb=" O LEUBA 15 " (cutoff:3.500A) removed outlier: 4.873A pdb=" N GLYBA 20 " --> pdb=" O ASNBA 16 " (cutoff:3.500A) No H-bonds generated for 'chain 'BA' and resid 14 through 20' Processing helix chain 'BA' and resid 34 through 46 removed outlier: 3.580A pdb=" N GLNBA 44 " --> pdb=" O TYRBA 40 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N GLNBA 45 " --> pdb=" O SERBA 41 " (cutoff:3.500A) removed outlier: 4.455A pdb=" N THRBA 46 " --> pdb=" O SERBA 42 " (cutoff:3.500A) Processing helix chain 'BA' and resid 48 through 62 removed outlier: 4.093A pdb=" N ALABA 55 " --> pdb=" O ASPBA 51 " (cutoff:3.500A) removed outlier: 6.071A pdb=" N THRBA 62 " --> pdb=" O SERBA 58 " (cutoff:3.500A) Processing helix chain 'BA' and resid 73 through 81 removed outlier: 3.719A pdb=" N ARGBA 78 " --> pdb=" O GLUBA 74 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N LEUBA 79 " --> pdb=" O PROBA 75 " (cutoff:3.500A) Proline residue: BA 81 - end of helix Processing helix chain 'BA' and resid 91 through 98 removed outlier: 3.502A pdb=" N ILEBA 95 " --> pdb=" O HISBA 91 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N GLYBA 98 " --> pdb=" O ASPBA 94 " (cutoff:3.500A) Processing helix chain 'BA' and resid 100 through 105 removed outlier: 3.928A pdb=" N LEUBA 104 " --> pdb=" O ALABA 100 " (cutoff:3.500A) Proline residue: BA 105 - end of helix No H-bonds generated for 'chain 'BA' and resid 100 through 105' Processing helix chain 'BA' and resid 119 through 134 removed outlier: 3.906A pdb=" N ALABA 123 " --> pdb=" O GLUBA 119 " (cutoff:3.500A) removed outlier: 4.199A pdb=" N ALABA 129 " --> pdb=" O ASNBA 125 " (cutoff:3.500A) Processing helix chain 'BA' and resid 142 through 150 removed outlier: 3.894A pdb=" N VALBA 146 " --> pdb=" O SERBA 142 " (cutoff:3.500A) removed outlier: 4.532A pdb=" N SERBA 147 " --> pdb=" O VALBA 143 " (cutoff:3.500A) removed outlier: 3.683A pdb=" N ILEBA 150 " --> pdb=" O VALBA 146 " (cutoff:3.500A) Processing helix chain 'BB' and resid 11 through 45 Proline residue: BB 22 - end of helix removed outlier: 3.963A pdb=" N ALABB 26 " --> pdb=" O PROBB 22 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N LEUBB 27 " --> pdb=" O ARGBB 23 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N ARGBB 37 " --> pdb=" O ARGBB 33 " (cutoff:3.500A) removed outlier: 4.122A pdb=" N GLYBB 43 " --> pdb=" O SERBB 39 " (cutoff:3.500A) removed outlier: 4.078A pdb=" N LYSBB 44 " --> pdb=" O ARGBB 40 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N ALABB 45 " --> pdb=" O HISBB 41 " (cutoff:3.500A) Processing helix chain 'BB' and resid 83 through 93 removed outlier: 3.700A pdb=" N ARGBB 88 " --> pdb=" O PROBB 84 " (cutoff:3.500A) removed outlier: 3.991A pdb=" N THRBB 93 " --> pdb=" O GLUBB 89 " (cutoff:3.500A) Processing helix chain 'BB' and resid 99 through 105 removed outlier: 3.803A pdb=" N TRPBB 103 " --> pdb=" O LYSBB 99 " (cutoff:3.500A) removed outlier: 4.429A pdb=" N GLUBB 105 " --> pdb=" O ASNBB 101 " (cutoff:3.500A) Processing helix chain 'BB' and resid 50 through 55 removed outlier: 4.590A pdb=" N GLNBB 55 " --> pdb=" O ALABB 50 " (cutoff:3.500A) No H-bonds generated for 'chain 'BB' and resid 50 through 55' Processing helix chain 'Aw' and resid 29 through 52 removed outlier: 4.057A pdb=" N VALAw 49 " --> pdb=" O ARGAw 45 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N LYSAw 52 " --> pdb=" O LEUAw 48 " (cutoff:3.500A) Processing helix chain 'Aw' and resid 71 through 112 removed outlier: 4.298A pdb=" N THRAw 80 " --> pdb=" O GLYAw 76 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N LEUAw 83 " --> pdb=" O HISAw 79 " (cutoff:3.500A) removed outlier: 4.567A pdb=" N THRAw 84 " --> pdb=" O THRAw 80 " (cutoff:3.500A) removed outlier: 3.938A pdb=" N GLUAw 85 " --> pdb=" O ARGAw 81 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N TRPAw 93 " --> pdb=" O HISAw 89 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N GLNAw 98 " --> pdb=" O GLYAw 94 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N GLNAw 100 " --> pdb=" O ARGAw 96 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N THRAw 102 " --> pdb=" O GLNAw 98 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N GLUAw 109 " --> pdb=" O ALAAw 105 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N THRAw 112 " --> pdb=" O LEUAw 108 " (cutoff:3.500A) Processing helix chain 'Aw' and resid 116 through 125 removed outlier: 4.921A pdb=" N GLUAw 121 " --> pdb=" O PROAw 117 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N ASPAw 122 " --> pdb=" O ALAAw 118 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N SERAw 125 " --> pdb=" O GLUAw 121 " (cutoff:3.500A) Processing helix chain 'Aw' and resid 130 through 136 removed outlier: 4.148A pdb=" N TYRAw 134 " --> pdb=" O ASPAw 130 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N SERAw 136 " --> pdb=" O ALAAw 132 " (cutoff:3.500A) Processing helix chain 'Aw' and resid 155 through 160 Proline residue: Aw 160 - end of helix Processing helix chain 'Bj' and resid 29 through 34 Proline residue: Bj 34 - end of helix Processing helix chain 'Bj' and resid 49 through 59 removed outlier: 3.999A pdb=" N METBj 55 " --> pdb=" O HISBj 51 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N GLNBj 56 " --> pdb=" O SERBj 52 " (cutoff:3.500A) removed outlier: 4.272A pdb=" N HISBj 57 " --> pdb=" O SERBj 53 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N ILEBj 58 " --> pdb=" O GLUBj 54 " (cutoff:3.500A) removed outlier: 5.337A pdb=" N GLUBj 59 " --> pdb=" O METBj 55 " (cutoff:3.500A) Processing helix chain 'Bj' and resid 108 through 124 removed outlier: 3.853A pdb=" N VALBj 118 " --> pdb=" O ARGBj 114 " (cutoff:3.500A) removed outlier: 3.863A pdb=" N ILEBj 123 " --> pdb=" O ALABj 119 " (cutoff:3.500A) Processing helix chain 'An' and resid 16 through 21 removed outlier: 5.651A pdb=" N LYSAn 20 " --> pdb=" O ASNAn 16 " (cutoff:3.500A) removed outlier: 5.150A pdb=" N GLYAn 21 " --> pdb=" O VALAn 17 " (cutoff:3.500A) No H-bonds generated for 'chain 'An' and resid 16 through 21' Processing helix chain 'An' and resid 28 through 40 removed outlier: 4.506A pdb=" N ASNAn 32 " --> pdb=" O TYRAn 28 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N GLUAn 37 " --> pdb=" O ARGAn 33 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N GLNAn 39 " --> pdb=" O GLNAn 35 " (cutoff:3.500A) removed outlier: 4.425A pdb=" N GLYAn 40 " --> pdb=" O ARGAn 36 " (cutoff:3.500A) Processing helix chain 'An' and resid 55 through 60 removed outlier: 4.122A pdb=" N PHEAn 59 " --> pdb=" O TYRAn 55 " (cutoff:3.500A) removed outlier: 5.692A pdb=" N ASNAn 60 " --> pdb=" O VALAn 56 " (cutoff:3.500A) No H-bonds generated for 'chain 'An' and resid 55 through 60' Processing helix chain 'An' and resid 71 through 78 removed outlier: 5.007A pdb=" N TRPAn 75 " --> pdb=" O SERAn 71 " (cutoff:3.500A) removed outlier: 4.570A pdb=" N LYSAn 76 " --> pdb=" O ALAAn 72 " (cutoff:3.500A) removed outlier: 4.822A pdb=" N TRPAn 77 " --> pdb=" O TYRAn 73 " (cutoff:3.500A) removed outlier: 6.179A pdb=" N TRPAn 78 " --> pdb=" O ALAAn 74 " (cutoff:3.500A) No H-bonds generated for 'chain 'An' and resid 71 through 78' Processing helix chain 'An' and resid 108 through 118 removed outlier: 5.559A pdb=" N ASPAn 112 " --> pdb=" O ASPAn 108 " (cutoff:3.500A) removed outlier: 3.560A pdb=" N SERAn 116 " --> pdb=" O ASPAn 112 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N METAn 117 " --> pdb=" O VALAn 113 " (cutoff:3.500A) removed outlier: 5.118A pdb=" N SERAn 118 " --> pdb=" O VALAn 114 " (cutoff:3.500A) Processing helix chain 'An' and resid 119 through 136 removed outlier: 3.888A pdb=" N GLNAn 123 " --> pdb=" O ASPAn 119 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N TYRAn 125 " --> pdb=" O GLUAn 121 " (cutoff:3.500A) removed outlier: 4.203A pdb=" N PHEAn 135 " --> pdb=" O THRAn 131 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N ALAAn 136 " --> pdb=" O GLUAn 132 " (cutoff:3.500A) Processing helix chain 'An' and resid 138 through 143 removed outlier: 4.366A pdb=" N GLYAn 142 " --> pdb=" O THRAn 138 " (cutoff:3.500A) Processing helix chain 'An' and resid 160 through 167 removed outlier: 3.566A pdb=" N ILEAn 164 " --> pdb=" O GLUAn 160 " (cutoff:3.500A) Processing helix chain 'An' and resid 171 through 182 removed outlier: 3.518A pdb=" N ARGAn 177 " --> pdb=" O THRAn 173 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N ARGAn 181 " --> pdb=" O ARGAn 177 " (cutoff:3.500A) Processing helix chain 'An' and resid 192 through 200 removed outlier: 4.263A pdb=" N GLUAn 198 " --> pdb=" O THRAn 194 " (cutoff:3.500A) removed outlier: 4.894A pdb=" N LYSAn 200 " --> pdb=" O ARGAn 196 " (cutoff:3.500A) Processing helix chain 'An' and resid 201 through 217 removed outlier: 4.304A pdb=" N THRAn 214 " --> pdb=" O LEUAn 210 " (cutoff:3.500A) removed outlier: 4.471A pdb=" N ALAAn 216 " --> pdb=" O HISAn 212 " (cutoff:3.500A) removed outlier: 3.888A pdb=" N ARGAn 217 " --> pdb=" O VALAn 213 " (cutoff:3.500A) Processing helix chain 'An' and resid 225 through 235 removed outlier: 3.995A pdb=" N ARGAn 229 " --> pdb=" O PROAn 225 " (cutoff:3.500A) removed outlier: 4.255A pdb=" N VALAn 231 " --> pdb=" O ALAAn 227 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N METAn 232 " --> pdb=" O ALAAn 228 " (cutoff:3.500A) Processing helix chain 'An' and resid 242 through 247 removed outlier: 4.486A pdb=" N ALAAn 246 " --> pdb=" O GLYAn 242 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N LEUAn 247 " --> pdb=" O PHEAn 243 " (cutoff:3.500A) No H-bonds generated for 'chain 'An' and resid 242 through 247' Processing helix chain 'An' and resid 253 through 262 removed outlier: 3.719A pdb=" N GLUAn 260 " --> pdb=" O VALAn 256 " (cutoff:3.500A) removed outlier: 3.949A pdb=" N ARGAn 261 " --> pdb=" O GLNAn 257 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N METAn 262 " --> pdb=" O GLUAn 258 " (cutoff:3.500A) Processing helix chain 'An' and resid 264 through 269 removed outlier: 4.852A pdb=" N GLNAn 268 " --> pdb=" O HISAn 264 " (cutoff:3.500A) removed outlier: 5.941A pdb=" N PHEAn 269 " --> pdb=" O LEUAn 265 " (cutoff:3.500A) No H-bonds generated for 'chain 'An' and resid 264 through 269' Processing helix chain 'An' and resid 285 through 308 removed outlier: 4.134A pdb=" N GLUAn 291 " --> pdb=" O THRAn 287 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N HISAn 294 " --> pdb=" O ARGAn 290 " (cutoff:3.500A) removed outlier: 3.590A pdb=" N ALAAn 300 " --> pdb=" O GLUAn 296 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N PHEAn 301 " --> pdb=" O ALAAn 297 " (cutoff:3.500A) removed outlier: 3.843A pdb=" N ASPAn 304 " --> pdb=" O ALAAn 300 " (cutoff:3.500A) removed outlier: 3.889A pdb=" N VALAn 305 " --> pdb=" O PHEAn 301 " (cutoff:3.500A) Processing helix chain 'An' and resid 309 through 324 removed outlier: 4.014A pdb=" N LYSAn 317 " --> pdb=" O ARGAn 313 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N ILEAn 318 " --> pdb=" O HISAn 314 " (cutoff:3.500A) removed outlier: 3.648A pdb=" N LYSAn 319 " --> pdb=" O METAn 315 " (cutoff:3.500A) removed outlier: 4.487A pdb=" N GLNAn 323 " --> pdb=" O LYSAn 319 " (cutoff:3.500A) removed outlier: 4.470A pdb=" N VALAn 324 " --> pdb=" O ALAAn 320 " (cutoff:3.500A) Processing helix chain 'An' and resid 183 through 188 removed outlier: 3.600A pdb=" N ARGAn 188 " --> pdb=" O VALAn 183 " (cutoff:3.500A) No H-bonds generated for 'chain 'An' and resid 183 through 188' Processing helix chain 'Al' and resid 62 through 81 removed outlier: 3.773A pdb=" N ALAAl 67 " --> pdb=" O PROAl 63 " (cutoff:3.500A) removed outlier: 3.785A pdb=" N LEUAl 77 " --> pdb=" O LYSAl 73 " (cutoff:3.500A) Processing helix chain 'Al' and resid 101 through 106 removed outlier: 4.508A pdb=" N GLUAl 105 " --> pdb=" O ASNAl 101 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N VALAl 106 " --> pdb=" O GLUAl 102 " (cutoff:3.500A) No H-bonds generated for 'chain 'Al' and resid 101 through 106' Processing helix chain 'Al' and resid 109 through 117 removed outlier: 4.008A pdb=" N GLUAl 115 " --> pdb=" O ALAAl 111 " (cutoff:3.500A) removed outlier: 4.802A pdb=" N VALAl 117 " --> pdb=" O LEUAl 113 " (cutoff:3.500A) Processing helix chain 'Al' and resid 137 through 162 removed outlier: 3.537A pdb=" N TYRAl 154 " --> pdb=" O VALAl 150 " (cutoff:3.500A) removed outlier: 4.915A pdb=" N LEUAl 155 " --> pdb=" O SERAl 151 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N ILEAl 156 " --> pdb=" O GLNAl 152 " (cutoff:3.500A) Proline residue: Al 157 - end of helix Processing helix chain 'Al' and resid 202 through 225 removed outlier: 5.110A pdb=" N GLUAl 208 " --> pdb=" O LYSAl 204 " (cutoff:3.500A) removed outlier: 3.962A pdb=" N SERAl 216 " --> pdb=" O ASNAl 212 " (cutoff:3.500A) removed outlier: 4.019A pdb=" N ALAAl 217 " --> pdb=" O GLYAl 213 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N ASNAl 219 " --> pdb=" O VALAl 215 " (cutoff:3.500A) Processing helix chain 'Al' and resid 228 through 238 removed outlier: 3.778A pdb=" N ARGAl 233 " --> pdb=" O LYSAl 229 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N SERAl 236 " --> pdb=" O METAl 232 " (cutoff:3.500A) Processing helix chain 'Al' and resid 255 through 265 removed outlier: 3.668A pdb=" N SERAl 261 " --> pdb=" O GLUAl 257 " (cutoff:3.500A) removed outlier: 5.133A pdb=" N HISAl 262 " --> pdb=" O GLUAl 258 " (cutoff:3.500A) removed outlier: 6.084A pdb=" N LEUAl 263 " --> pdb=" O ARGAl 259 " (cutoff:3.500A) removed outlier: 5.509A pdb=" N LYSAl 265 " --> pdb=" O SERAl 261 " (cutoff:3.500A) Processing helix chain 'Al' and resid 285 through 290 removed outlier: 6.533A pdb=" N ASNAl 289 " --> pdb=" O LEUAl 285 " (cutoff:3.500A) removed outlier: 4.717A pdb=" N TYRAl 290 " --> pdb=" O ASPAl 286 " (cutoff:3.500A) No H-bonds generated for 'chain 'Al' and resid 285 through 290' Processing helix chain 'Al' and resid 36 through 41 removed outlier: 5.448A pdb=" N GLNAl 39 " --> pdb=" O GLUAl 36 " (cutoff:3.500A) removed outlier: 5.039A pdb=" N ASPAl 40 " --> pdb=" O GLNAl 37 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N VALAl 41 " --> pdb=" O VALAl 38 " (cutoff:3.500A) No H-bonds generated for 'chain 'Al' and resid 36 through 41' Processing helix chain 'BI' and resid 105 through 118 removed outlier: 3.711A pdb=" N SERBI 109 " --> pdb=" O CYSBI 105 " (cutoff:3.500A) removed outlier: 4.047A pdb=" N GLYBI 118 " --> pdb=" O LYSBI 114 " (cutoff:3.500A) Processing helix chain 'BI' and resid 137 through 142 removed outlier: 5.189A pdb=" N LEUBI 141 " --> pdb=" O ARGBI 137 " (cutoff:3.500A) Proline residue: BI 142 - end of helix No H-bonds generated for 'chain 'BI' and resid 137 through 142' Processing helix chain 'BI' and resid 183 through 190 removed outlier: 4.567A pdb=" N SERBI 190 " --> pdb=" O GLUBI 186 " (cutoff:3.500A) Processing helix chain 'BI' and resid 236 through 247 removed outlier: 4.253A pdb=" N VALBI 240 " --> pdb=" O GLYBI 236 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N GLUBI 244 " --> pdb=" O VALBI 240 " (cutoff:3.500A) removed outlier: 4.135A pdb=" N ALABI 245 " --> pdb=" O LYSBI 241 " (cutoff:3.500A) removed outlier: 3.845A pdb=" N ILEBI 246 " --> pdb=" O ALABI 242 " (cutoff:3.500A) Proline residue: BI 247 - end of helix Processing helix chain 'Az' and resid 20 through 30 removed outlier: 4.158A pdb=" N LYSAz 27 " --> pdb=" O SERAz 23 " (cutoff:3.500A) removed outlier: 4.280A pdb=" N ARGAz 28 " --> pdb=" O HISAz 24 " (cutoff:3.500A) removed outlier: 4.546A pdb=" N LEUAz 30 " --> pdb=" O LEUAz 26 " (cutoff:3.500A) Processing helix chain 'Az' and resid 47 through 55 removed outlier: 4.510A pdb=" N LEUAz 51 " --> pdb=" O ASPAz 47 " (cutoff:3.500A) removed outlier: 4.561A pdb=" N VALAz 52 " --> pdb=" O PROAz 48 " (cutoff:3.500A) removed outlier: 5.450A pdb=" N HISAz 53 " --> pdb=" O ARGAz 49 " (cutoff:3.500A) removed outlier: 5.139A pdb=" N ALAAz 54 " --> pdb=" O LYSAz 50 " (cutoff:3.500A) removed outlier: 6.003A pdb=" N ASNAz 55 " --> pdb=" O LEUAz 51 " (cutoff:3.500A) No H-bonds generated for 'chain 'Az' and resid 47 through 55' Processing helix chain 'Az' and resid 68 through 75 removed outlier: 4.367A pdb=" N GLUAz 72 " --> pdb=" O ASPAz 68 " (cutoff:3.500A) removed outlier: 4.615A pdb=" N HISAz 73 " --> pdb=" O PROAz 69 " (cutoff:3.500A) Processing helix chain 'Az' and resid 89 through 98 removed outlier: 3.854A pdb=" N LYSAz 93 " --> pdb=" O PROAz 89 " (cutoff:3.500A) removed outlier: 5.067A pdb=" N ASPAz 94 " --> pdb=" O LYSAz 90 " (cutoff:3.500A) removed outlier: 6.167A pdb=" N ALAAz 95 " --> pdb=" O GLUAz 91 " (cutoff:3.500A) removed outlier: 4.909A pdb=" N TYRAz 96 " --> pdb=" O TYRAz 92 " (cutoff:3.500A) removed outlier: 4.280A pdb=" N TRPAz 97 " --> pdb=" O LYSAz 93 " (cutoff:3.500A) removed outlier: 5.575A pdb=" N TRPAz 98 " --> pdb=" O ASPAz 94 " (cutoff:3.500A) No H-bonds generated for 'chain 'Az' and resid 89 through 98' Processing helix chain 'Az' and resid 99 through 105 removed outlier: 3.857A pdb=" N ARGAz 104 " --> pdb=" O ASPAz 100 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N ARGAz 105 " --> pdb=" O LEUAz 101 " (cutoff:3.500A) Processing helix chain 'Az' and resid 109 through 114 removed outlier: 4.134A pdb=" N VALAz 113 " --> pdb=" O PROAz 109 " (cutoff:3.500A) Processing helix chain 'Az' and resid 120 through 125 removed outlier: 3.996A pdb=" N LYSAz 124 " --> pdb=" O LYSAz 120 " (cutoff:3.500A) Processing helix chain 'Az' and resid 139 through 151 removed outlier: 3.779A pdb=" N VALAz 144 " --> pdb=" O TYRAz 140 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N ASPAz 149 " --> pdb=" O ALAAz 145 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N METAz 150 " --> pdb=" O ASNAz 146 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N CYSAz 151 " --> pdb=" O ALAAz 147 " (cutoff:3.500A) Processing helix chain 'At' and resid 13 through 20 removed outlier: 4.241A pdb=" N ARGAt 17 " --> pdb=" O METAt 13 " (cutoff:3.500A) removed outlier: 5.373A pdb=" N GLYAt 18 " --> pdb=" O LYSAt 14 " (cutoff:3.500A) removed outlier: 5.008A pdb=" N THRAt 19 " --> pdb=" O TYRAt 15 " (cutoff:3.500A) removed outlier: 4.046A pdb=" N GLYAt 20 " --> pdb=" O LYSAt 16 " (cutoff:3.500A) No H-bonds generated for 'chain 'At' and resid 13 through 20' Processing helix chain 'At' and resid 37 through 71 removed outlier: 3.876A pdb=" N ASNAt 55 " --> pdb=" O LEUAt 51 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ASNAt 56 " --> pdb=" O GLNAt 52 " (cutoff:3.500A) removed outlier: 3.500A pdb=" N THRAt 63 " --> pdb=" O ALAAt 59 " (cutoff:3.500A) removed outlier: 3.608A pdb=" N GLYAt 71 " --> pdb=" O ASNAt 67 " (cutoff:3.500A) Processing helix chain 'At' and resid 78 through 88 removed outlier: 3.645A pdb=" N ARGAt 82 " --> pdb=" O GLYAt 78 " (cutoff:3.500A) removed outlier: 3.927A pdb=" N GLUAt 85 " --> pdb=" O GLUAt 81 " (cutoff:3.500A) Processing helix chain 'At' and resid 98 through 132 removed outlier: 3.840A pdb=" N GLUAt 107 " --> pdb=" O ALAAt 103 " (cutoff:3.500A) removed outlier: 4.486A pdb=" N VALAt 109 " --> pdb=" O VALAt 105 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N LEUAt 110 " --> pdb=" O ALAAt 106 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N GLUAt 115 " --> pdb=" O LEUAt 111 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N HISAt 119 " --> pdb=" O GLUAt 115 " (cutoff:3.500A) removed outlier: 3.560A pdb=" N LYSAt 122 " --> pdb=" O ALAAt 118 " (cutoff:3.500A) removed outlier: 3.767A pdb=" N ALAAt 123 " --> pdb=" O HISAt 119 " (cutoff:3.500A) removed outlier: 3.874A pdb=" N GLUAt 125 " --> pdb=" O LYSAt 121 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N SERAt 126 " --> pdb=" O LYSAt 122 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N GLNAt 127 " --> pdb=" O ALAAt 123 " (cutoff:3.500A) removed outlier: 3.540A pdb=" N ALAAt 130 " --> pdb=" O SERAt 126 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N ARGAt 131 " --> pdb=" O GLNAt 127 " (cutoff:3.500A) removed outlier: 5.442A pdb=" N ARGAt 132 " --> pdb=" O ARGAt 128 " (cutoff:3.500A) Processing helix chain 'At' and resid 148 through 160 removed outlier: 5.010A pdb=" N SERAt 157 " --> pdb=" O ALAAt 153 " (cutoff:3.500A) removed outlier: 5.449A pdb=" N ASNAt 158 " --> pdb=" O SERAt 154 " (cutoff:3.500A) removed outlier: 4.361A pdb=" N TYRAt 159 " --> pdb=" O METAt 155 " (cutoff:3.500A) removed outlier: 4.915A pdb=" N THRAt 160 " --> pdb=" O GLNAt 156 " (cutoff:3.500A) Processing helix chain 'BC' and resid 1 through 22 removed outlier: 3.669A pdb=" N TYRBC 5 " --> pdb=" O METBC 1 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ARGBC 8 " --> pdb=" O ILEBC 4 " (cutoff:3.500A) removed outlier: 4.643A pdb=" N THRBC 12 " --> pdb=" O ARGBC 8 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N SERBC 13 " --> pdb=" O LEUBC 9 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N HISBC 16 " --> pdb=" O THRBC 12 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N LEUBC 18 " --> pdb=" O METBC 14 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N SERBC 21 " --> pdb=" O GLNBC 17 " (cutoff:3.500A) Processing helix chain 'BC' and resid 23 through 33 removed outlier: 3.504A pdb=" N ALABC 28 " --> pdb=" O THRBC 24 " (cutoff:3.500A) removed outlier: 3.973A pdb=" N VALBC 31 " --> pdb=" O ALABC 27 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N LYSBC 33 " --> pdb=" O THRBC 29 " (cutoff:3.500A) Processing helix chain 'BC' and resid 37 through 50 removed outlier: 4.733A pdb=" N GLUBC 43 " --> pdb=" O ALABC 39 " (cutoff:3.500A) Processing helix chain 'BC' and resid 58 through 64 removed outlier: 6.241A pdb=" N ALABC 62 " --> pdb=" O ILEBC 58 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N GLUBC 64 " --> pdb=" O ALABC 60 " (cutoff:3.500A) Processing helix chain 'BC' and resid 69 through 76 removed outlier: 4.350A pdb=" N LEUBC 74 " --> pdb=" O HISBC 70 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N GLUBC 76 " --> pdb=" O THRBC 72 " (cutoff:3.500A) Processing helix chain 'BC' and resid 78 through 84 removed outlier: 4.191A pdb=" N GLUBC 82 " --> pdb=" O CYSBC 78 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N SERBC 83 " --> pdb=" O ALABC 79 " (cutoff:3.500A) removed outlier: 5.939A pdb=" N ALABC 84 " --> pdb=" O TRPBC 80 " (cutoff:3.500A) No H-bonds generated for 'chain 'BC' and resid 78 through 84' Processing helix chain 'BC' and resid 85 through 91 removed outlier: 3.532A pdb=" N GLNBC 90 " --> pdb=" O ALABC 86 " (cutoff:3.500A) Processing helix chain 'BC' and resid 93 through 105 removed outlier: 4.141A pdb=" N HISBC 98 " --> pdb=" O PROBC 94 " (cutoff:3.500A) removed outlier: 3.647A pdb=" N SERBC 101 " --> pdb=" O GLNBC 97 " (cutoff:3.500A) Processing helix chain 'BC' and resid 108 through 116 removed outlier: 3.584A pdb=" N THRBC 114 " --> pdb=" O THRBC 110 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ALABC 115 " --> pdb=" O GLNBC 111 " (cutoff:3.500A) Processing helix chain 'BC' and resid 117 through 131 removed outlier: 3.630A pdb=" N PHEBC 122 " --> pdb=" O SERBC 118 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N HISBC 125 " --> pdb=" O LEUBC 121 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N ALABC 127 " --> pdb=" O ASNBC 123 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N ARGBC 128 " --> pdb=" O GLUBC 124 " (cutoff:3.500A) removed outlier: 3.684A pdb=" N ASPBC 130 " --> pdb=" O LEUBC 126 " (cutoff:3.500A) Processing helix chain 'Ab' and resid 23 through 32 removed outlier: 4.178A pdb=" N ALAAb 30 " --> pdb=" O ARGAb 26 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N THRAb 31 " --> pdb=" O GLNAb 27 " (cutoff:3.500A) Processing helix chain 'Ab' and resid 33 through 41 removed outlier: 4.466A pdb=" N ARGAb 38 " --> pdb=" O PROAb 34 " (cutoff:3.500A) Proline residue: Ab 41 - end of helix Processing helix chain 'Ab' and resid 75 through 90 removed outlier: 3.652A pdb=" N ASNAb 88 " --> pdb=" O HISAb 84 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N GLUAb 89 " --> pdb=" O ARGAb 85 " (cutoff:3.500A) removed outlier: 5.279A pdb=" N GLYAb 90 " --> pdb=" O LEUAb 86 " (cutoff:3.500A) Processing helix chain 'Ab' and resid 114 through 120 removed outlier: 4.752A pdb=" N TRPAb 118 " --> pdb=" O ASNAb 114 " (cutoff:3.500A) removed outlier: 4.362A pdb=" N ASNAb 119 " --> pdb=" O PROAb 115 " (cutoff:3.500A) removed outlier: 5.170A pdb=" N TYRAb 120 " --> pdb=" O TYRAb 116 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ab' and resid 114 through 120' Processing helix chain 'Ab' and resid 138 through 166 removed outlier: 3.563A pdb=" N ASPAb 143 " --> pdb=" O GLUAb 139 " (cutoff:3.500A) removed outlier: 3.699A pdb=" N TYRAb 144 " --> pdb=" O LYSAb 140 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N GLNAb 147 " --> pdb=" O ASPAb 143 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N GLNAb 152 " --> pdb=" O GLNAb 148 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N ALAAb 155 " --> pdb=" O ALAAb 151 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N GLUAb 156 " --> pdb=" O GLNAb 152 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N ARGAb 165 " --> pdb=" O ALAAb 161 " (cutoff:3.500A) Processing helix chain 'Ab' and resid 168 through 190 removed outlier: 3.840A pdb=" N GLUAb 177 " --> pdb=" O ALAAb 173 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N ASNAb 179 " --> pdb=" O THRAb 175 " (cutoff:3.500A) removed outlier: 3.942A pdb=" N GLNAb 180 " --> pdb=" O GLUAb 176 " (cutoff:3.500A) removed outlier: 5.351A pdb=" N METAb 187 " --> pdb=" O LYSAb 183 " (cutoff:3.500A) Proline residue: Ab 188 - end of helix Processing helix chain 'Ab' and resid 193 through 208 removed outlier: 3.512A pdb=" N SERAb 199 " --> pdb=" O GLUAb 195 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N ARGAb 206 " --> pdb=" O LYSAb 202 " (cutoff:3.500A) Processing helix chain 'Ab' and resid 216 through 225 removed outlier: 4.618A pdb=" N LEUAb 222 " --> pdb=" O ASNAb 218 " (cutoff:3.500A) removed outlier: 5.680A pdb=" N PHEAb 223 " --> pdb=" O GLUAb 219 " (cutoff:3.500A) removed outlier: 4.193A pdb=" N SERAb 224 " --> pdb=" O TYRAb 220 " (cutoff:3.500A) removed outlier: 6.113A pdb=" N VALAb 225 " --> pdb=" O SERAb 221 " (cutoff:3.500A) Processing helix chain 'Ab' and resid 227 through 258 removed outlier: 3.971A pdb=" N GLNAb 233 " --> pdb=" O SERAb 229 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N ILEAb 236 " --> pdb=" O GLYAb 232 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N GLUAb 247 " --> pdb=" O GLUAb 243 " (cutoff:3.500A) removed outlier: 4.475A pdb=" N GLUAb 248 " --> pdb=" O ALAAb 244 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N TRPAb 250 " --> pdb=" O ARGAb 246 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N LEUAb 258 " --> pdb=" O ARGAb 254 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 19 through 31 removed outlier: 3.693A pdb=" N TYRAi 23 " --> pdb=" O LEUAi 19 " (cutoff:3.500A) removed outlier: 3.900A pdb=" N ASNAi 25 " --> pdb=" O GLYAi 21 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N GLNAi 27 " --> pdb=" O TYRAi 23 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N LYSAi 30 " --> pdb=" O ILEAi 26 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 47 through 66 removed outlier: 4.004A pdb=" N LEUAi 58 " --> pdb=" O ASNAi 54 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N HISAi 60 " --> pdb=" O GLUAi 56 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N GLYAi 61 " --> pdb=" O ALAAi 57 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N GLNAi 64 " --> pdb=" O HISAi 60 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N THRAi 65 " --> pdb=" O GLYAi 61 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 80 through 94 removed outlier: 4.865A pdb=" N PHEAi 84 " --> pdb=" O ASNAi 80 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N VALAi 85 " --> pdb=" O CYSAi 81 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N LEUAi 86 " --> pdb=" O GLUAi 82 " (cutoff:3.500A) removed outlier: 4.451A pdb=" N GLNAi 87 " --> pdb=" O THRAi 83 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 106 through 118 removed outlier: 4.296A pdb=" N ASNAi 115 " --> pdb=" O ARGAi 111 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N GLNAi 118 " --> pdb=" O LEUAi 114 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 144 through 154 removed outlier: 3.982A pdb=" N THRAi 148 " --> pdb=" O HISAi 144 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N ASNAi 151 " --> pdb=" O ASPAi 147 " (cutoff:3.500A) Proline residue: Ai 154 - end of helix Processing helix chain 'Ai' and resid 208 through 217 removed outlier: 3.964A pdb=" N ARGAi 212 " --> pdb=" O GLNAi 208 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N LEUAi 213 " --> pdb=" O ARGAi 209 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N LEUAi 216 " --> pdb=" O ARGAi 212 " (cutoff:3.500A) removed outlier: 3.686A pdb=" N LEUAi 217 " --> pdb=" O LEUAi 213 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 242 through 258 removed outlier: 3.543A pdb=" N CYSAi 246 " --> pdb=" O SERAi 242 " (cutoff:3.500A) removed outlier: 3.931A pdb=" N PHEAi 253 " --> pdb=" O ALAAi 249 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N GLNAi 255 " --> pdb=" O PHEAi 251 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N GLNAi 258 " --> pdb=" O GLYAi 254 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 274 through 279 removed outlier: 3.726A pdb=" N ALAAi 278 " --> pdb=" O ASPAi 274 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 280 through 289 removed outlier: 3.673A pdb=" N ALAAi 284 " --> pdb=" O ILEAi 280 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N SERAi 288 " --> pdb=" O ALAAi 284 " (cutoff:3.500A) removed outlier: 4.888A pdb=" N GLYAi 289 " --> pdb=" O ALAAi 285 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 301 through 316 removed outlier: 3.723A pdb=" N ALAAi 305 " --> pdb=" O THRAi 301 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N ILEAi 306 " --> pdb=" O ASPAi 302 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N ASNAi 307 " --> pdb=" O ASPAi 303 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N GLUAi 310 " --> pdb=" O ILEAi 306 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N GLUAi 316 " --> pdb=" O LEUAi 312 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 323 through 338 removed outlier: 3.551A pdb=" N PHEAi 327 " --> pdb=" O ARGAi 323 " (cutoff:3.500A) removed outlier: 4.805A pdb=" N LEUAi 329 " --> pdb=" O ALAAi 325 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N ILEAi 330 " --> pdb=" O ASPAi 326 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N HISAi 333 " --> pdb=" O LEUAi 329 " (cutoff:3.500A) removed outlier: 4.601A pdb=" N GLYAi 335 " --> pdb=" O LEUAi 331 " (cutoff:3.500A) removed outlier: 5.727A pdb=" N ASNAi 336 " --> pdb=" O LYSAi 332 " (cutoff:3.500A) removed outlier: 4.153A pdb=" N PHEAi 337 " --> pdb=" O HISAi 333 " (cutoff:3.500A) removed outlier: 5.361A pdb=" N ASPAi 338 " --> pdb=" O ALAAi 334 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 339 through 344 removed outlier: 4.490A pdb=" N GLUAi 343 " --> pdb=" O ALAAi 339 " (cutoff:3.500A) removed outlier: 5.886A pdb=" N HISAi 344 " --> pdb=" O ASPAi 340 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ai' and resid 339 through 344' Processing helix chain 'Ai' and resid 360 through 372 removed outlier: 3.657A pdb=" N LEUAi 364 " --> pdb=" O SERAi 360 " (cutoff:3.500A) Processing helix chain 'Ai' and resid 268 through 273 removed outlier: 4.258A pdb=" N HISAi 271 " --> pdb=" O METAi 268 " (cutoff:3.500A) removed outlier: 5.846A pdb=" N HISAi 272 " --> pdb=" O PROAi 269 " (cutoff:3.500A) removed outlier: 5.152A pdb=" N THRAi 273 " --> pdb=" O ASNAi 270 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ai' and resid 268 through 273' Processing helix chain 'Ap' and resid 41 through 48 removed outlier: 5.511A pdb=" N PHEAp 46 " --> pdb=" O ASNAp 42 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N LYSAp 47 " --> pdb=" O GLUAp 43 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N ALAAp 48 " --> pdb=" O GLNAp 44 " (cutoff:3.500A) Processing helix chain 'Ap' and resid 56 through 71 removed outlier: 3.627A pdb=" N LEUAp 64 " --> pdb=" O ARGAp 60 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N SERAp 65 " --> pdb=" O ASPAp 61 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N GLNAp 71 " --> pdb=" O LEUAp 67 " (cutoff:3.500A) Processing helix chain 'Ap' and resid 74 through 85 removed outlier: 4.460A pdb=" N TRPAp 79 " --> pdb=" O VALAp 75 " (cutoff:3.500A) removed outlier: 5.204A pdb=" N GLUAp 80 " --> pdb=" O ALAAp 76 " (cutoff:3.500A) removed outlier: 4.240A pdb=" N HISAp 81 " --> pdb=" O SERAp 77 " (cutoff:3.500A) removed outlier: 3.623A pdb=" N CYSAp 82 " --> pdb=" O LEUAp 78 " (cutoff:3.500A) removed outlier: 4.641A pdb=" N HISAp 84 " --> pdb=" O GLUAp 80 " (cutoff:3.500A) removed outlier: 3.667A pdb=" N ASPAp 85 " --> pdb=" O HISAp 81 " (cutoff:3.500A) Processing helix chain 'Ap' and resid 92 through 107 removed outlier: 3.557A pdb=" N GLYAp 107 " --> pdb=" O ALAAp 103 " (cutoff:3.500A) Processing helix chain 'Ap' and resid 128 through 147 removed outlier: 3.719A pdb=" N VALAp 132 " --> pdb=" O ARGAp 128 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N ALAAp 134 " --> pdb=" O GLUAp 130 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N ARGAp 139 " --> pdb=" O LEUAp 135 " (cutoff:3.500A) removed outlier: 4.726A pdb=" N LEUAp 145 " --> pdb=" O GLUAp 141 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N TYRAp 146 " --> pdb=" O ALAAp 142 " (cutoff:3.500A) removed outlier: 4.256A pdb=" N SERAp 147 " --> pdb=" O GLNAp 143 " (cutoff:3.500A) Processing helix chain 'Ap' and resid 153 through 171 removed outlier: 4.267A pdb=" N THRAp 157 " --> pdb=" O SERAp 153 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N ALAAp 159 " --> pdb=" O THRAp 155 " (cutoff:3.500A) removed outlier: 4.711A pdb=" N TYRAp 160 " --> pdb=" O GLUAp 156 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N GLUAp 162 " --> pdb=" O SERAp 158 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N SERAp 163 " --> pdb=" O ALAAp 159 " (cutoff:3.500A) removed outlier: 3.974A pdb=" N GLUAp 169 " --> pdb=" O ARGAp 165 " (cutoff:3.500A) removed outlier: 4.020A pdb=" N ASPAp 170 " --> pdb=" O GLUAp 166 " (cutoff:3.500A) Processing helix chain 'Ap' and resid 173 through 194 removed outlier: 3.957A pdb=" N ARGAp 177 " --> pdb=" O ARGAp 173 " (cutoff:3.500A) removed outlier: 3.893A pdb=" N LEUAp 178 " --> pdb=" O GLUAp 174 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N THRAp 188 " --> pdb=" O ALAAp 184 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N HISAp 189 " --> pdb=" O ASPAp 185 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N LEUAp 190 " --> pdb=" O THRAp 186 " (cutoff:3.500A) Processing helix chain 'Au' and resid 13 through 18 removed outlier: 4.154A pdb=" N TYRAu 17 " --> pdb=" O ALAAu 13 " (cutoff:3.500A) Proline residue: Au 18 - end of helix No H-bonds generated for 'chain 'Au' and resid 13 through 18' Processing helix chain 'Au' and resid 37 through 48 removed outlier: 3.839A pdb=" N METAu 41 " --> pdb=" O PROAu 37 " (cutoff:3.500A) removed outlier: 5.738A pdb=" N PHEAu 42 " --> pdb=" O TYRAu 38 " (cutoff:3.500A) removed outlier: 4.230A pdb=" N TRPAu 43 " --> pdb=" O ASNAu 39 " (cutoff:3.500A) removed outlier: 4.938A pdb=" N THRAu 45 " --> pdb=" O METAu 41 " (cutoff:3.500A) removed outlier: 5.804A pdb=" N ASNAu 48 " --> pdb=" O ARGAu 44 " (cutoff:3.500A) Processing helix chain 'Au' and resid 55 through 69 removed outlier: 3.857A pdb=" N SERAu 59 " --> pdb=" O SERAu 55 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N PHEAu 61 " --> pdb=" O TRPAu 57 " (cutoff:3.500A) removed outlier: 5.701A pdb=" N ARGAu 62 " --> pdb=" O VALAu 58 " (cutoff:3.500A) removed outlier: 5.726A pdb=" N HISAu 63 " --> pdb=" O SERAu 59 " (cutoff:3.500A) removed outlier: 6.204A pdb=" N LYSAu 64 " --> pdb=" O ASPAu 60 " (cutoff:3.500A) removed outlier: 5.800A pdb=" N LEUAu 66 " --> pdb=" O ARGAu 62 " (cutoff:3.500A) removed outlier: 4.472A pdb=" N ALAAu 67 " --> pdb=" O HISAu 63 " (cutoff:3.500A) Processing helix chain 'Au' and resid 92 through 97 removed outlier: 4.973A pdb=" N LEUAu 96 " --> pdb=" O VALAu 92 " (cutoff:3.500A) removed outlier: 5.559A pdb=" N ALAAu 97 " --> pdb=" O HISAu 93 " (cutoff:3.500A) No H-bonds generated for 'chain 'Au' and resid 92 through 97' Processing helix chain 'Au' and resid 115 through 168 removed outlier: 3.789A pdb=" N ARGAu 127 " --> pdb=" O ALAAu 123 " (cutoff:3.500A) removed outlier: 4.007A pdb=" N ASPAu 129 " --> pdb=" O GLUAu 125 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ALAAu 131 " --> pdb=" O ARGAu 127 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ASPAu 137 " --> pdb=" O LYSAu 133 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N ARGAu 138 " --> pdb=" O METAu 134 " (cutoff:3.500A) removed outlier: 3.660A pdb=" N LEUAu 140 " --> pdb=" O ARGAu 136 " (cutoff:3.500A) removed outlier: 3.739A pdb=" N VALAu 141 " --> pdb=" O ASPAu 137 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N LEUAu 144 " --> pdb=" O LEUAu 140 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N THRAu 146 " --> pdb=" O GLUAu 142 " (cutoff:3.500A) removed outlier: 4.444A pdb=" N HISAu 147 " --> pdb=" O GLNAu 143 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N LYSAu 155 " --> pdb=" O GLYAu 151 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N LYSAu 165 " --> pdb=" O GLYAu 161 " (cutoff:3.500A) removed outlier: 3.798A pdb=" N GLUAu 166 " --> pdb=" O ARGAu 162 " (cutoff:3.500A) removed outlier: 3.830A pdb=" N GLYAu 168 " --> pdb=" O CYSAu 164 " (cutoff:3.500A) Processing helix chain 'Au' and resid 176 through 183 removed outlier: 4.114A pdb=" N ASPAu 180 " --> pdb=" O GLYAu 176 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ALAAu 182 " --> pdb=" O ALAAu 178 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N GLUAu 183 " --> pdb=" O VALAu 179 " (cutoff:3.500A) Processing helix chain 'Aa' and resid 33 through 39 removed outlier: 3.883A pdb=" N ARGAa 38 " --> pdb=" O ARGAa 34 " (cutoff:3.500A) removed outlier: 4.900A pdb=" N TYRAa 39 " --> pdb=" O GLYAa 35 " (cutoff:3.500A) Processing helix chain 'Aa' and resid 91 through 96 removed outlier: 4.434A pdb=" N PHEAa 95 " --> pdb=" O LEUAa 91 " (cutoff:3.500A) removed outlier: 4.400A pdb=" N ARGAa 96 " --> pdb=" O SERAa 92 " (cutoff:3.500A) No H-bonds generated for 'chain 'Aa' and resid 91 through 96' Processing helix chain 'Aa' and resid 111 through 129 removed outlier: 3.652A pdb=" N GLYAa 127 " --> pdb=" O HISAa 123 " (cutoff:3.500A) removed outlier: 4.034A pdb=" N LYSAa 128 " --> pdb=" O THRAa 124 " (cutoff:3.500A) removed outlier: 5.106A pdb=" N ALAAa 129 " --> pdb=" O GLUAa 125 " (cutoff:3.500A) Processing helix chain 'Aa' and resid 133 through 149 removed outlier: 3.585A pdb=" N TYRAa 138 " --> pdb=" O VALAa 134 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N ALAAa 148 " --> pdb=" O GLNAa 144 " (cutoff:3.500A) Processing helix chain 'Aa' and resid 154 through 174 removed outlier: 3.916A pdb=" N ALAAa 163 " --> pdb=" O GLNAa 159 " (cutoff:3.500A) removed outlier: 4.263A pdb=" N TRPAa 166 " --> pdb=" O LYSAa 162 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N SERAa 171 " --> pdb=" O ASNAa 167 " (cutoff:3.500A) removed outlier: 3.929A pdb=" N LYSAa 174 " --> pdb=" O LYSAa 170 " (cutoff:3.500A) Processing helix chain 'Aa' and resid 182 through 194 removed outlier: 5.381A pdb=" N METAa 186 " --> pdb=" O PROAa 182 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N GLYAa 187 " --> pdb=" O ASPAa 183 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N ALAAa 188 " --> pdb=" O PHEAa 184 " (cutoff:3.500A) removed outlier: 4.411A pdb=" N ARGAa 189 " --> pdb=" O VALAa 185 " (cutoff:3.500A) removed outlier: 4.491A pdb=" N SERAa 190 " --> pdb=" O METAa 186 " (cutoff:3.500A) removed outlier: 4.892A pdb=" N THRAa 191 " --> pdb=" O GLYAa 187 " (cutoff:3.500A) removed outlier: 6.558A pdb=" N TYRAa 193 " --> pdb=" O ARGAa 189 " (cutoff:3.500A) removed outlier: 6.674A pdb=" N ASNAa 194 " --> pdb=" O SERAa 190 " (cutoff:3.500A) Processing helix chain 'Ao' and resid 48 through 53 removed outlier: 4.191A pdb=" N TYRAo 52 " --> pdb=" O METAo 48 " (cutoff:3.500A) removed outlier: 5.345A pdb=" N GLYAo 53 " --> pdb=" O PROAo 49 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ao' and resid 48 through 53' Processing helix chain 'Ao' and resid 61 through 70 removed outlier: 3.603A pdb=" N ARGAo 69 " --> pdb=" O HISAo 65 " (cutoff:3.500A) removed outlier: 4.599A pdb=" N ASNAo 70 " --> pdb=" O ASNAo 66 " (cutoff:3.500A) Processing helix chain 'Ao' and resid 100 through 108 removed outlier: 4.859A pdb=" N VALAo 105 " --> pdb=" O ALAAo 101 " (cutoff:3.500A) removed outlier: 5.563A pdb=" N ALAAo 106 " --> pdb=" O LEUAo 102 " (cutoff:3.500A) removed outlier: 4.713A pdb=" N ASNAo 107 " --> pdb=" O SERAo 103 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N ASNAo 108 " --> pdb=" O THRAo 104 " (cutoff:3.500A) Processing helix chain 'Ao' and resid 114 through 120 removed outlier: 6.121A pdb=" N GLUAo 118 " --> pdb=" O ASPAo 114 " (cutoff:3.500A) removed outlier: 5.070A pdb=" N VALAo 119 " --> pdb=" O TYRAo 115 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N GLYAo 120 " --> pdb=" O TYRAo 116 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ao' and resid 114 through 120' Processing helix chain 'Ao' and resid 130 through 143 removed outlier: 4.464A pdb=" N THRAo 134 " --> pdb=" O PROAo 130 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N ALAAo 135 " --> pdb=" O LEUAo 131 " (cutoff:3.500A) Proline residue: Ao 136 - end of helix removed outlier: 4.147A pdb=" N GLNAo 140 " --> pdb=" O PROAo 136 " (cutoff:3.500A) removed outlier: 4.191A pdb=" N TYRAo 141 " --> pdb=" O PHEAo 137 " (cutoff:3.500A) Processing helix chain 'Ao' and resid 147 through 162 removed outlier: 3.515A pdb=" N GLNAo 152 " --> pdb=" O ARGAo 148 " (cutoff:3.500A) removed outlier: 3.862A pdb=" N SERAo 153 " --> pdb=" O GLUAo 149 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N GLUAo 156 " --> pdb=" O GLNAo 152 " (cutoff:3.500A) removed outlier: 4.620A pdb=" N GLUAo 159 " --> pdb=" O LEUAo 155 " (cutoff:3.500A) Processing helix chain 'Ao' and resid 166 through 174 removed outlier: 4.235A pdb=" N ARGAo 174 " --> pdb=" O ALAAo 170 " (cutoff:3.500A) Processing helix chain 'Ao' and resid 175 through 184 Processing helix chain 'Ao' and resid 190 through 221 removed outlier: 3.823A pdb=" N LEUAo 194 " --> pdb=" O PROAo 190 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N ASPAo 203 " --> pdb=" O LEUAo 199 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N VALAo 205 " --> pdb=" O SERAo 201 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N ALAAo 206 " --> pdb=" O ARGAo 202 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N GLUAo 219 " --> pdb=" O ILEAo 215 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N ARGAo 220 " --> pdb=" O GLUAo 216 " (cutoff:3.500A) Processing helix chain 'Ao' and resid 256 through 261 removed outlier: 3.562A pdb=" N GLNAo 260 " --> pdb=" O GLYAo 256 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N METAo 261 " --> pdb=" O LYSAo 257 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ao' and resid 256 through 261' Processing helix chain 'BM' and resid 4 through 12 removed outlier: 3.855A pdb=" N ASPBM 10 " --> pdb=" O GLYBM 6 " (cutoff:3.500A) removed outlier: 5.586A pdb=" N ALABM 12 " --> pdb=" O CYSBM 8 " (cutoff:3.500A) Processing helix chain 'BM' and resid 28 through 38 removed outlier: 4.958A pdb=" N PHEBM 32 " --> pdb=" O VALBM 28 " (cutoff:3.500A) Proline residue: BM 38 - end of helix Processing helix chain 'BM' and resid 40 through 62 removed outlier: 4.100A pdb=" N ASPBM 60 " --> pdb=" O PHEBM 56 " (cutoff:3.500A) removed outlier: 4.554A pdb=" N LEUBM 61 " --> pdb=" O LEUBM 57 " (cutoff:3.500A) Processing helix chain 'BM' and resid 69 through 84 removed outlier: 4.694A pdb=" N THRBM 73 " --> pdb=" O LEUBM 69 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N TYRBM 77 " --> pdb=" O THRBM 73 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N GLNBM 81 " --> pdb=" O TYRBM 77 " (cutoff:3.500A) removed outlier: 5.263A pdb=" N LEUBM 82 " --> pdb=" O VALBM 78 " (cutoff:3.500A) removed outlier: 4.969A pdb=" N TYRBM 83 " --> pdb=" O ARGBM 79 " (cutoff:3.500A) removed outlier: 4.525A pdb=" N ASPBM 84 " --> pdb=" O ARGBM 80 " (cutoff:3.500A) Processing helix chain 'BM' and resid 85 through 101 removed outlier: 3.506A pdb=" N ARGBM 89 " --> pdb=" O GLUBM 85 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N LEUBM 93 " --> pdb=" O ARGBM 89 " (cutoff:3.500A) removed outlier: 3.656A pdb=" N GLYBM 97 " --> pdb=" O LEUBM 93 " (cutoff:3.500A) removed outlier: 4.507A pdb=" N LYSBM 98 " --> pdb=" O METBM 94 " (cutoff:3.500A) removed outlier: 3.991A pdb=" N ALABM 100 " --> pdb=" O THRBM 96 " (cutoff:3.500A) Processing helix chain 'BM' and resid 119 through 133 removed outlier: 3.532A pdb=" N GLNBM 123 " --> pdb=" O THRBM 119 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N LEUBM 126 " --> pdb=" O LEUBM 122 " (cutoff:3.500A) removed outlier: 5.784A pdb=" N LYSBM 133 " --> pdb=" O LEUBM 129 " (cutoff:3.500A) Processing helix chain 'BM' and resid 136 through 146 removed outlier: 5.480A pdb=" N ARGBM 140 " --> pdb=" O CYSBM 136 " (cutoff:3.500A) removed outlier: 4.677A pdb=" N LEUBM 144 " --> pdb=" O ARGBM 140 " (cutoff:3.500A) Proline residue: BM 146 - end of helix Processing helix chain 'BM' and resid 147 through 162 removed outlier: 4.469A pdb=" N ALABM 152 " --> pdb=" O ALABM 148 " (cutoff:3.500A) removed outlier: 4.825A pdb=" N HISBM 153 " --> pdb=" O ALABM 149 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ARGBM 160 " --> pdb=" O LEUBM 156 " (cutoff:3.500A) Processing helix chain 'BM' and resid 171 through 182 removed outlier: 3.749A pdb=" N TYRBM 179 " --> pdb=" O GLNBM 175 " (cutoff:3.500A) removed outlier: 4.434A pdb=" N LEUBM 180 " --> pdb=" O ALABM 176 " (cutoff:3.500A) Proline residue: BM 181 - end of helix Processing helix chain 'BM' and resid 196 through 201 removed outlier: 3.569A pdb=" N GLYBM 200 " --> pdb=" O ILEBM 196 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N GLYBM 201 " --> pdb=" O PHEBM 197 " (cutoff:3.500A) No H-bonds generated for 'chain 'BM' and resid 196 through 201' Processing helix chain 'BM' and resid 208 through 217 removed outlier: 4.014A pdb=" N ARGBM 213 " --> pdb=" O ALABM 209 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N GLNBM 216 " --> pdb=" O GLUBM 212 " (cutoff:3.500A) Processing helix chain 'BM' and resid 226 through 241 removed outlier: 3.599A pdb=" N GLYBM 231 " --> pdb=" O TYRBM 227 " (cutoff:3.500A) removed outlier: 4.841A pdb=" N ALABM 232 " --> pdb=" O ASNBM 228 " (cutoff:3.500A) removed outlier: 3.622A pdb=" N LYSBM 235 " --> pdb=" O GLYBM 231 " (cutoff:3.500A) Proline residue: BM 238 - end of helix Processing helix chain 'BM' and resid 242 through 249 removed outlier: 3.788A pdb=" N PHEBM 247 " --> pdb=" O ALABM 243 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N GLYBM 249 " --> pdb=" O TYRBM 245 " (cutoff:3.500A) Processing helix chain 'BM' and resid 251 through 257 Proline residue: BM 256 - end of helix Processing helix chain 'BM' and resid 268 through 281 removed outlier: 3.551A pdb=" N LYSBM 272 " --> pdb=" O HISBM 268 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N GLYBM 274 " --> pdb=" O PHEBM 270 " (cutoff:3.500A) Proline residue: BM 277 - end of helix removed outlier: 4.476A pdb=" N LEUBM 280 " --> pdb=" O HISBM 276 " (cutoff:3.500A) removed outlier: 4.130A pdb=" N GLNBM 281 " --> pdb=" O PROBM 277 " (cutoff:3.500A) Processing helix chain 'BM' and resid 282 through 295 removed outlier: 4.894A pdb=" N LEUBM 293 " --> pdb=" O ARGBM 289 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ASPBM 294 " --> pdb=" O HISBM 290 " (cutoff:3.500A) Proline residue: BM 295 - end of helix Processing helix chain 'BM' and resid 296 through 306 removed outlier: 5.461A pdb=" N ALABM 301 " --> pdb=" O SERBM 297 " (cutoff:3.500A) Proline residue: BM 303 - end of helix Processing helix chain 'BM' and resid 311 through 318 removed outlier: 4.015A pdb=" N LEUBM 316 " --> pdb=" O VALBM 312 " (cutoff:3.500A) removed outlier: 5.763A pdb=" N PHEBM 317 " --> pdb=" O GLNBM 313 " (cutoff:3.500A) Proline residue: BM 318 - end of helix Processing helix chain 'BM' and resid 319 through 340 removed outlier: 3.844A pdb=" N ARGBM 323 " --> pdb=" O ALABM 319 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N CYSBM 324 " --> pdb=" O LEUBM 320 " (cutoff:3.500A) removed outlier: 4.558A pdb=" N THRBM 329 " --> pdb=" O GLNBM 325 " (cutoff:3.500A) removed outlier: 4.998A pdb=" N SERBM 330 " --> pdb=" O TYRBM 326 " (cutoff:3.500A) Proline residue: BM 331 - end of helix removed outlier: 3.516A pdb=" N THRBM 340 " --> pdb=" O GLNBM 336 " (cutoff:3.500A) Processing helix chain 'BM' and resid 349 through 370 removed outlier: 4.038A pdb=" N ALABM 355 " --> pdb=" O PROBM 351 " (cutoff:3.500A) Proline residue: BM 356 - end of helix removed outlier: 3.800A pdb=" N ASPBM 360 " --> pdb=" O PROBM 356 " (cutoff:3.500A) removed outlier: 4.182A pdb=" N LEUBM 365 " --> pdb=" O LEUBM 361 " (cutoff:3.500A) removed outlier: 3.946A pdb=" N VALBM 366 " --> pdb=" O ALABM 362 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N VALBM 367 " --> pdb=" O ALABM 363 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N GLUBM 368 " --> pdb=" O GLNBM 364 " (cutoff:3.500A) removed outlier: 4.105A pdb=" N GLYBM 369 " --> pdb=" O LEUBM 365 " (cutoff:3.500A) Processing helix chain 'BM' and resid 371 through 386 removed outlier: 4.011A pdb=" N GLYBM 375 " --> pdb=" O TRPBM 371 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N GLUBM 377 " --> pdb=" O LYSBM 373 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N ASNBM 381 " --> pdb=" O GLUBM 377 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N LEUBM 382 " --> pdb=" O ALABM 378 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N LEUBM 383 " --> pdb=" O ASPBM 379 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N HISBM 384 " --> pdb=" O THRBM 380 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N THRBM 386 " --> pdb=" O LEUBM 382 " (cutoff:3.500A) Processing helix chain 'Ar' and resid 43 through 54 removed outlier: 3.563A pdb=" N LYSAr 49 " --> pdb=" O GLUAr 45 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N SERAr 52 " --> pdb=" O GLNAr 48 " (cutoff:3.500A) removed outlier: 3.884A pdb=" N GLUAr 53 " --> pdb=" O LYSAr 49 " (cutoff:3.500A) Processing helix chain 'Ar' and resid 60 through 66 removed outlier: 4.351A pdb=" N GLNAr 65 " --> pdb=" O ALAAr 61 " (cutoff:3.500A) removed outlier: 3.887A pdb=" N GLYAr 66 " --> pdb=" O GLUAr 62 " (cutoff:3.500A) Processing helix chain 'Ar' and resid 84 through 107 removed outlier: 4.078A pdb=" N ALAAr 92 " --> pdb=" O LEUAr 88 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N ARGAr 93 " --> pdb=" O ASPAr 89 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N VALAr 100 " --> pdb=" O GLNAr 96 " (cutoff:3.500A) Processing helix chain 'Ar' and resid 127 through 139 removed outlier: 4.071A pdb=" N LYSAr 134 " --> pdb=" O ASPAr 130 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N GLNAr 138 " --> pdb=" O LYSAr 134 " (cutoff:3.500A) Processing helix chain 'Ar' and resid 144 through 149 removed outlier: 4.268A pdb=" N ILEAr 148 " --> pdb=" O ASPAr 144 " (cutoff:3.500A) removed outlier: 6.364A pdb=" N GLUAr 149 " --> pdb=" O PROAr 145 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ar' and resid 144 through 149' Processing helix chain 'Ar' and resid 151 through 156 removed outlier: 4.825A pdb=" N ARGAr 156 " --> pdb=" O GLUAr 152 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 136 through 144 removed outlier: 3.857A pdb=" N ALAAj 140 " --> pdb=" O SERAj 136 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N GLYAj 143 " --> pdb=" O ALAAj 139 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N GLNAj 144 " --> pdb=" O ALAAj 140 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 200 through 218 removed outlier: 3.846A pdb=" N LYSAj 206 " --> pdb=" O GLYAj 202 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 221 through 238 removed outlier: 3.651A pdb=" N TYRAj 226 " --> pdb=" O GLUAj 222 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N VALAj 229 " --> pdb=" O GLUAj 225 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N GLUAj 235 " --> pdb=" O ALAAj 231 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 242 through 260 removed outlier: 3.809A pdb=" N ARGAj 249 " --> pdb=" O VALAj 245 " (cutoff:3.500A) removed outlier: 3.599A pdb=" N LEUAj 250 " --> pdb=" O ALAAj 246 " (cutoff:3.500A) removed outlier: 3.958A pdb=" N ALAAj 253 " --> pdb=" O ARGAj 249 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N ARGAj 257 " --> pdb=" O ALAAj 253 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N ARGAj 258 " --> pdb=" O GLYAj 254 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N THRAj 259 " --> pdb=" O ALAAj 255 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 261 through 280 removed outlier: 3.915A pdb=" N ALAAj 267 " --> pdb=" O THRAj 263 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N VALAj 272 " --> pdb=" O ASNAj 268 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N LEUAj 273 " --> pdb=" O CYSAj 269 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N GLNAj 274 " --> pdb=" O GLUAj 270 " (cutoff:3.500A) removed outlier: 4.306A pdb=" N SERAj 278 " --> pdb=" O GLNAj 274 " (cutoff:3.500A) removed outlier: 4.422A pdb=" N ALAAj 279 " --> pdb=" O METAj 275 " (cutoff:3.500A) removed outlier: 5.306A pdb=" N VALAj 280 " --> pdb=" O LEUAj 276 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 283 through 302 removed outlier: 3.755A pdb=" N VALAj 288 " --> pdb=" O LEUAj 284 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N GLUAj 289 " --> pdb=" O GLUAj 285 " (cutoff:3.500A) removed outlier: 3.953A pdb=" N LEUAj 291 " --> pdb=" O ILEAj 287 " (cutoff:3.500A) removed outlier: 3.775A pdb=" N LEUAj 294 " --> pdb=" O ALAAj 290 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N SERAj 302 " --> pdb=" O SERAj 298 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 303 through 320 removed outlier: 4.691A pdb=" N THRAj 308 " --> pdb=" O ALAAj 304 " (cutoff:3.500A) removed outlier: 4.515A pdb=" N VALAj 309 " --> pdb=" O ALAAj 305 " (cutoff:3.500A) removed outlier: 5.901A pdb=" N PHEAj 310 " --> pdb=" O ALAAj 306 " (cutoff:3.500A) removed outlier: 6.507A pdb=" N GLUAj 311 " --> pdb=" O GLYAj 307 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N GLUAj 312 " --> pdb=" O THRAj 308 " (cutoff:3.500A) removed outlier: 3.892A pdb=" N LEUAj 316 " --> pdb=" O GLUAj 312 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N VALAj 317 " --> pdb=" O ALAAj 313 " (cutoff:3.500A) removed outlier: 4.611A pdb=" N METAj 319 " --> pdb=" O ALAAj 315 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 328 through 337 removed outlier: 5.077A pdb=" N LEUAj 332 " --> pdb=" O LYSAj 328 " (cutoff:3.500A) removed outlier: 4.547A pdb=" N LEUAj 333 " --> pdb=" O METAj 329 " (cutoff:3.500A) Proline residue: Aj 334 - end of helix removed outlier: 4.014A pdb=" N GLYAj 337 " --> pdb=" O LEUAj 333 " (cutoff:3.500A) No H-bonds generated for 'chain 'Aj' and resid 328 through 337' Processing helix chain 'Aj' and resid 344 through 349 removed outlier: 4.084A pdb=" N PHEAj 348 " --> pdb=" O PHEAj 344 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 352 through 357 Processing helix chain 'Aj' and resid 358 through 378 removed outlier: 3.550A pdb=" N LEUAj 367 " --> pdb=" O ALAAj 363 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N TYRAj 374 " --> pdb=" O ALAAj 370 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 379 through 402 removed outlier: 3.653A pdb=" N ARGAj 385 " --> pdb=" O ALAAj 381 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N GLNAj 389 " --> pdb=" O ARGAj 385 " (cutoff:3.500A) removed outlier: 3.776A pdb=" N GLUAj 392 " --> pdb=" O GLNAj 388 " (cutoff:3.500A) removed outlier: 4.021A pdb=" N LYSAj 396 " --> pdb=" O GLUAj 392 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N ASNAj 400 " --> pdb=" O LYSAj 396 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N METAj 401 " --> pdb=" O LYSAj 397 " (cutoff:3.500A) removed outlier: 3.740A pdb=" N ARGAj 402 " --> pdb=" O PHEAj 398 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 414 through 422 removed outlier: 4.713A pdb=" N ARGAj 418 " --> pdb=" O HISAj 414 " (cutoff:3.500A) removed outlier: 5.014A pdb=" N ALAAj 419 " --> pdb=" O TRPAj 415 " (cutoff:3.500A) removed outlier: 4.725A pdb=" N GLNAj 420 " --> pdb=" O LYSAj 416 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N VALAj 421 " --> pdb=" O ARGAj 417 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 427 through 435 removed outlier: 3.593A pdb=" N LEUAj 432 " --> pdb=" O PROAj 428 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N TYRAj 434 " --> pdb=" O GLUAj 430 " (cutoff:3.500A) Processing helix chain 'Aj' and resid 444 through 449 removed outlier: 3.913A pdb=" N GLUAj 448 " --> pdb=" O ASPAj 444 " (cutoff:3.500A) removed outlier: 4.926A pdb=" N LEUAj 449 " --> pdb=" O PHEAj 445 " (cutoff:3.500A) No H-bonds generated for 'chain 'Aj' and resid 444 through 449' Processing helix chain 'Aj' and resid 473 through 478 removed outlier: 4.723A pdb=" N SERAj 477 " --> pdb=" O PROAj 473 " (cutoff:3.500A) removed outlier: 5.372A pdb=" N GLYAj 478 " --> pdb=" O TYRAj 474 " (cutoff:3.500A) No H-bonds generated for 'chain 'Aj' and resid 473 through 478' Processing helix chain 'Aj' and resid 479 through 497 removed outlier: 3.815A pdb=" N METAj 484 " --> pdb=" O ARGAj 480 " (cutoff:3.500A) removed outlier: 4.177A pdb=" N PHEAj 485 " --> pdb=" O SERAj 481 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N ARGAj 486 " --> pdb=" O GLNAj 482 " (cutoff:3.500A) removed outlier: 5.654A pdb=" N ASPAj 487 " --> pdb=" O ARGAj 483 " (cutoff:3.500A) removed outlier: 6.929A pdb=" N ALAAj 488 " --> pdb=" O METAj 484 " (cutoff:3.500A) removed outlier: 4.890A pdb=" N GLUAj 489 " --> pdb=" O PHEAj 485 " (cutoff:3.500A) removed outlier: 5.017A pdb=" N LYSAj 490 " --> pdb=" O ARGAj 486 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ASNAj 491 " --> pdb=" O ASPAj 487 " (cutoff:3.500A) removed outlier: 3.966A pdb=" N LYSAj 494 " --> pdb=" O LYSAj 490 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N TYRAj 495 " --> pdb=" O ASNAj 491 " (cutoff:3.500A) Processing helix chain 'BH' and resid 52 through 65 removed outlier: 3.797A pdb=" N GLUBH 57 " --> pdb=" O PROBH 53 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N ASNBH 58 " --> pdb=" O ARGBH 54 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N GLYBH 65 " --> pdb=" O SERBH 61 " (cutoff:3.500A) Processing helix chain 'BH' and resid 149 through 154 removed outlier: 6.596A pdb=" N ARGBH 154 " --> pdb=" O GLUBH 150 " (cutoff:3.500A) Processing helix chain 'BH' and resid 165 through 176 removed outlier: 3.744A pdb=" N VALBH 169 " --> pdb=" O GLYBH 165 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N LYSBH 174 " --> pdb=" O ASNBH 170 " (cutoff:3.500A) Processing helix chain 'BH' and resid 199 through 208 removed outlier: 3.693A pdb=" N THRBH 203 " --> pdb=" O METBH 199 " (cutoff:3.500A) removed outlier: 3.956A pdb=" N ALABH 206 " --> pdb=" O GLUBH 202 " (cutoff:3.500A) Processing helix chain 'BH' and resid 218 through 224 removed outlier: 3.507A pdb=" N LEUBH 222 " --> pdb=" O GLYBH 218 " (cutoff:3.500A) removed outlier: 4.157A pdb=" N ASPBH 223 " --> pdb=" O LYSBH 219 " (cutoff:3.500A) removed outlier: 4.547A pdb=" N LEUBH 224 " --> pdb=" O GLUBH 220 " (cutoff:3.500A) No H-bonds generated for 'chain 'BH' and resid 218 through 224' Processing helix chain 'Am' and resid 34 through 43 removed outlier: 4.763A pdb=" N GLNAm 40 " --> pdb=" O ALAAm 36 " (cutoff:3.500A) removed outlier: 5.447A pdb=" N PHEAm 41 " --> pdb=" O LYSAm 37 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N VALAm 42 " --> pdb=" O LEUAm 38 " (cutoff:3.500A) Proline residue: Am 43 - end of helix Processing helix chain 'Am' and resid 53 through 65 removed outlier: 3.860A pdb=" N GLNAm 57 " --> pdb=" O PROAm 53 " (cutoff:3.500A) removed outlier: 4.339A pdb=" N GLUAm 58 " --> pdb=" O ASNAm 54 " (cutoff:3.500A) removed outlier: 3.727A pdb=" N ARGAm 59 " --> pdb=" O ASNAm 55 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N PHEAm 61 " --> pdb=" O GLNAm 57 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N LEUAm 64 " --> pdb=" O GLNAm 60 " (cutoff:3.500A) removed outlier: 3.892A pdb=" N GLYAm 65 " --> pdb=" O PHEAm 61 " (cutoff:3.500A) Processing helix chain 'Am' and resid 85 through 97 removed outlier: 6.139A pdb=" N TRPAm 90 " --> pdb=" O PROAm 86 " (cutoff:3.500A) removed outlier: 4.218A pdb=" N ARGAm 91 " --> pdb=" O GLUAm 87 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N LEUAm 92 " --> pdb=" O ALAAm 88 " (cutoff:3.500A) Processing helix chain 'Am' and resid 103 through 122 removed outlier: 3.964A pdb=" N CYSAm 107 " --> pdb=" O GLYAm 103 " (cutoff:3.500A) removed outlier: 3.966A pdb=" N GLUAm 108 " --> pdb=" O LYSAm 104 " (cutoff:3.500A) Proline residue: Am 116 - end of helix removed outlier: 4.353A pdb=" N LYSAm 120 " --> pdb=" O PROAm 116 " (cutoff:3.500A) Proline residue: Am 122 - end of helix Processing helix chain 'Am' and resid 123 through 140 removed outlier: 4.297A pdb=" N GLUAm 127 " --> pdb=" O LYSAm 123 " (cutoff:3.500A) removed outlier: 4.907A pdb=" N ARGAm 128 " --> pdb=" O GLUAm 124 " (cutoff:3.500A) removed outlier: 3.557A pdb=" N VALAm 129 " --> pdb=" O ASNAm 125 " (cutoff:3.500A) removed outlier: 3.699A pdb=" N LEUAm 130 " --> pdb=" O METAm 126 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N LYSAm 138 " --> pdb=" O ARGAm 134 " (cutoff:3.500A) Processing helix chain 'Am' and resid 143 through 158 removed outlier: 3.913A pdb=" N TYRAm 147 " --> pdb=" O ASPAm 143 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N LYSAm 158 " --> pdb=" O ALAAm 154 " (cutoff:3.500A) Processing helix chain 'Am' and resid 159 through 174 removed outlier: 4.484A pdb=" N GLUAm 169 " --> pdb=" O GLNAm 165 " (cutoff:3.500A) removed outlier: 3.623A pdb=" N METAm 170 " --> pdb=" O LEUAm 166 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N GLUAm 171 " --> pdb=" O PHEAm 167 " (cutoff:3.500A) Processing helix chain 'Am' and resid 178 through 193 removed outlier: 3.649A pdb=" N TYRAm 182 " --> pdb=" O ASNAm 178 " (cutoff:3.500A) removed outlier: 4.043A pdb=" N VALAm 183 " --> pdb=" O ALAAm 179 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N METAm 185 " --> pdb=" O SERAm 181 " (cutoff:3.500A) removed outlier: 4.776A pdb=" N GLYAm 193 " --> pdb=" O ALAAm 189 " (cutoff:3.500A) Processing helix chain 'Am' and resid 195 through 210 removed outlier: 4.185A pdb=" N SERAm 199 " --> pdb=" O PROAm 195 " (cutoff:3.500A) removed outlier: 5.763A pdb=" N GLUAm 200 " --> pdb=" O PROAm 196 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N ALAAm 201 " --> pdb=" O GLUAm 197 " (cutoff:3.500A) removed outlier: 4.401A pdb=" N TYRAm 202 " --> pdb=" O LYSAm 198 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N ARGAm 205 " --> pdb=" O ALAAm 201 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N LYSAm 208 " --> pdb=" O LYSAm 204 " (cutoff:3.500A) Processing helix chain 'Am' and resid 217 through 233 removed outlier: 3.645A pdb=" N PHEAm 222 " --> pdb=" O METAm 218 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N ARGAm 223 " --> pdb=" O ASPAm 219 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N GLNAm 228 " --> pdb=" O METAm 224 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N ARGAm 231 " --> pdb=" O ASPAm 227 " (cutoff:3.500A) removed outlier: 4.519A pdb=" N GLYAm 233 " --> pdb=" O LEUAm 229 " (cutoff:3.500A) Processing helix chain 'Am' and resid 240 through 245 removed outlier: 4.142A pdb=" N VALAm 244 " --> pdb=" O GLYAm 240 " (cutoff:3.500A) removed outlier: 5.547A pdb=" N ASNAm 245 " --> pdb=" O TYRAm 241 " (cutoff:3.500A) No H-bonds generated for 'chain 'Am' and resid 240 through 245' Processing helix chain 'Am' and resid 271 through 285 removed outlier: 4.644A pdb=" N METAm 277 " --> pdb=" O ARGAm 273 " (cutoff:3.500A) removed outlier: 4.088A pdb=" N ARGAm 281 " --> pdb=" O METAm 277 " (cutoff:3.500A) removed outlier: 5.206A pdb=" N HISAm 285 " --> pdb=" O ARGAm 281 " (cutoff:3.500A) Processing helix chain 'Am' and resid 301 through 306 removed outlier: 3.795A pdb=" N LYSAm 305 " --> pdb=" O GLNAm 301 " (cutoff:3.500A) removed outlier: 6.465A pdb=" N PHEAm 306 " --> pdb=" O PROAm 302 " (cutoff:3.500A) No H-bonds generated for 'chain 'Am' and resid 301 through 306' Processing helix chain 'Am' and resid 310 through 316 removed outlier: 4.315A pdb=" N TYRAm 314 " --> pdb=" O LEUAm 310 " (cutoff:3.500A) removed outlier: 3.762A pdb=" N ASNAm 315 " --> pdb=" O ARGAm 311 " (cutoff:3.500A) removed outlier: 4.252A pdb=" N GLYAm 316 " --> pdb=" O HISAm 312 " (cutoff:3.500A) No H-bonds generated for 'chain 'Am' and resid 310 through 316' Processing helix chain 'Aq' and resid 30 through 38 removed outlier: 3.734A pdb=" N HISAq 36 " --> pdb=" O TYRAq 32 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N ASPAq 37 " --> pdb=" O ALAAq 33 " (cutoff:3.500A) removed outlier: 4.801A pdb=" N LEUAq 38 " --> pdb=" O GLUAq 34 " (cutoff:3.500A) Processing helix chain 'Aq' and resid 55 through 60 removed outlier: 5.103A pdb=" N ARGAq 60 " --> pdb=" O METAq 56 " (cutoff:3.500A) Processing helix chain 'Aq' and resid 85 through 94 removed outlier: 6.699A pdb=" N PHEAq 89 " --> pdb=" O ASPAq 85 " (cutoff:3.500A) removed outlier: 5.252A pdb=" N PHEAq 90 " --> pdb=" O METAq 86 " (cutoff:3.500A) removed outlier: 5.707A pdb=" N THRAq 91 " --> pdb=" O GLYAq 87 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N GLUAq 92 " --> pdb=" O ALAAq 88 " (cutoff:3.500A) removed outlier: 5.922A pdb=" N GLNAq 93 " --> pdb=" O PHEAq 89 " (cutoff:3.500A) removed outlier: 4.976A pdb=" N HISAq 94 " --> pdb=" O PHEAq 90 " (cutoff:3.500A) No H-bonds generated for 'chain 'Aq' and resid 85 through 94' Processing helix chain 'Aq' and resid 113 through 121 removed outlier: 3.974A pdb=" N LEUAq 119 " --> pdb=" O LEUAq 115 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N PHEAq 120 " --> pdb=" O ALAAq 116 " (cutoff:3.500A) Proline residue: Aq 121 - end of helix Processing helix chain 'Aq' and resid 126 through 154 removed outlier: 3.989A pdb=" N GLUAq 131 " --> pdb=" O ARGAq 127 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N ALAAq 132 " --> pdb=" O ALAAq 128 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N ARGAq 134 " --> pdb=" O THRAq 130 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N ILEAq 135 " --> pdb=" O GLUAq 131 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N ASPAq 139 " --> pdb=" O ILEAq 135 " (cutoff:3.500A) Processing helix chain 'Aq' and resid 162 through 168 removed outlier: 4.519A pdb=" N SERAq 167 " --> pdb=" O LEUAq 163 " (cutoff:3.500A) removed outlier: 5.378A pdb=" N GLNAq 168 " --> pdb=" O SERAq 164 " (cutoff:3.500A) Processing helix chain 'Aq' and resid 213 through 218 removed outlier: 3.635A pdb=" N LEUAq 217 " --> pdb=" O PROAq 213 " (cutoff:3.500A) removed outlier: 5.792A pdb=" N SERAq 218 " --> pdb=" O PROAq 214 " (cutoff:3.500A) No H-bonds generated for 'chain 'Aq' and resid 213 through 218' Processing helix chain 'Aq' and resid 222 through 228 removed outlier: 4.321A pdb=" N GLYAq 228 " --> pdb=" O VALAq 224 " (cutoff:3.500A) Processing helix chain 'Aq' and resid 316 through 325 removed outlier: 3.826A pdb=" N ARGAq 320 " --> pdb=" O PHEAq 316 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N SERAq 322 " --> pdb=" O TRPAq 318 " (cutoff:3.500A) removed outlier: 4.395A pdb=" N ARGAq 323 " --> pdb=" O LYSAq 319 " (cutoff:3.500A) removed outlier: 4.600A pdb=" N SERAq 324 " --> pdb=" O ARGAq 320 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N LEUAq 325 " --> pdb=" O LYSAq 321 " (cutoff:3.500A) Processing helix chain 'BE' and resid 80 through 85 removed outlier: 5.028A pdb=" N GLUBE 84 " --> pdb=" O SERBE 80 " (cutoff:3.500A) Proline residue: BE 85 - end of helix No H-bonds generated for 'chain 'BE' and resid 80 through 85' Processing helix chain 'BE' and resid 92 through 99 removed outlier: 6.262A pdb=" N HISBE 98 " --> pdb=" O TYRBE 94 " (cutoff:3.500A) removed outlier: 4.726A pdb=" N ARGBE 99 " --> pdb=" O ARGBE 95 " (cutoff:3.500A) Processing helix chain 'Ak' and resid 33 through 46 removed outlier: 3.722A pdb=" N ALAAk 41 " --> pdb=" O ALAAk 37 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N LYSAk 43 " --> pdb=" O GLNAk 39 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N ARGAk 44 " --> pdb=" O GLUAk 40 " (cutoff:3.500A) Processing helix chain 'Ak' and resid 70 through 88 removed outlier: 3.914A pdb=" N GLUAk 74 " --> pdb=" O ILEAk 70 " (cutoff:3.500A) removed outlier: 3.851A pdb=" N GLNAk 75 " --> pdb=" O ASNAk 71 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N SERAk 76 " --> pdb=" O VALAk 72 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N VALAk 83 " --> pdb=" O HISAk 79 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N ASPAk 85 " --> pdb=" O CYSAk 81 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N METAk 87 " --> pdb=" O VALAk 83 " (cutoff:3.500A) Processing helix chain 'Ak' and resid 98 through 110 removed outlier: 4.024A pdb=" N LEUAk 102 " --> pdb=" O SERAk 98 " (cutoff:3.500A) removed outlier: 4.111A pdb=" N ALAAk 104 " --> pdb=" O GLYAk 100 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N ALAAk 109 " --> pdb=" O ALAAk 105 " (cutoff:3.500A) Processing helix chain 'Ak' and resid 113 through 118 removed outlier: 4.820A pdb=" N ILEAk 117 " --> pdb=" O TYRAk 113 " (cutoff:3.500A) removed outlier: 5.846A pdb=" N GLYAk 118 " --> pdb=" O PROAk 114 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ak' and resid 113 through 118' Processing helix chain 'Ak' and resid 129 through 149 removed outlier: 4.095A pdb=" N GLNAk 138 " --> pdb=" O ARGAk 134 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N ALAAk 143 " --> pdb=" O ARGAk 139 " (cutoff:3.500A) removed outlier: 5.595A pdb=" N VALAk 149 " --> pdb=" O ALAAk 145 " (cutoff:3.500A) Processing helix chain 'Ak' and resid 152 through 167 removed outlier: 3.718A pdb=" N ALAAk 166 " --> pdb=" O SERAk 162 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N LEUAk 167 " --> pdb=" O LEUAk 163 " (cutoff:3.500A) Processing helix chain 'Ak' and resid 176 through 183 removed outlier: 4.913A pdb=" N SERAk 180 " --> pdb=" O ALAAk 176 " (cutoff:3.500A) removed outlier: 4.724A pdb=" N LEUAk 181 " --> pdb=" O VALAk 177 " (cutoff:3.500A) Processing helix chain 'Ak' and resid 189 through 194 removed outlier: 4.928A pdb=" N PHEAk 193 " --> pdb=" O SERAk 189 " (cutoff:3.500A) removed outlier: 6.195A pdb=" N ARGAk 194 " --> pdb=" O ALAAk 190 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ak' and resid 189 through 194' Processing helix chain 'Ak' and resid 207 through 214 removed outlier: 3.776A pdb=" N GLNAk 213 " --> pdb=" O ARGAk 209 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N VALAk 214 " --> pdb=" O HISAk 210 " (cutoff:3.500A) Processing helix chain 'Ak' and resid 230 through 239 removed outlier: 4.037A pdb=" N HISAk 234 " --> pdb=" O ASPAk 230 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N GLUAk 236 " --> pdb=" O ALAAk 232 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N GLYAk 239 " --> pdb=" O ARGAk 235 " (cutoff:3.500A) Processing helix chain 'Ak' and resid 251 through 258 removed outlier: 3.883A pdb=" N LEUAk 255 " --> pdb=" O ASNAk 251 " (cutoff:3.500A) removed outlier: 6.963A pdb=" N PHEAk 256 " --> pdb=" O HISAk 252 " (cutoff:3.500A) removed outlier: 4.572A pdb=" N SERAk 257 " --> pdb=" O GLUAk 253 " (cutoff:3.500A) removed outlier: 5.961A pdb=" N ALAAk 258 " --> pdb=" O ASPAk 254 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ak' and resid 251 through 258' Processing helix chain 'Ak' and resid 260 through 276 removed outlier: 3.799A pdb=" N ALAAk 265 " --> pdb=" O ALAAk 261 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N VALAk 268 " --> pdb=" O VALAk 264 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N ALAAk 270 " --> pdb=" O ASPAk 266 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N ARGAk 274 " --> pdb=" O ALAAk 270 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N PHEAk 275 " --> pdb=" O TRPAk 271 " (cutoff:3.500A) Processing helix chain 'Ak' and resid 277 through 300 removed outlier: 3.865A pdb=" N GLNAk 294 " --> pdb=" O LYSAk 290 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N LEUAk 295 " --> pdb=" O GLUAk 291 " (cutoff:3.500A) removed outlier: 5.098A pdb=" N ALAAk 300 " --> pdb=" O METAk 296 " (cutoff:3.500A) Processing helix chain 'BP' and resid -4 through 5 removed outlier: 4.851A pdb=" N TRPBP 0 " --> pdb=" O THRBP -4 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N HISBP 4 " --> pdb=" O TRPBP 0 " (cutoff:3.500A) Processing helix chain 'BP' and resid 14 through 19 removed outlier: 3.792A pdb=" N ILEBP 19 " --> pdb=" O PROBP 15 " (cutoff:3.500A) Processing helix chain 'BP' and resid 33 through 64 removed outlier: 3.993A pdb=" N ALABP 38 " --> pdb=" O GLYBP 34 " (cutoff:3.500A) removed outlier: 4.159A pdb=" N VALBP 57 " --> pdb=" O SERBP 53 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N ARGBP 59 " --> pdb=" O ALABP 55 " (cutoff:3.500A) removed outlier: 4.293A pdb=" N GLUBP 62 " --> pdb=" O GLUBP 58 " (cutoff:3.500A) Processing helix chain 'BP' and resid 72 through 80 Proline residue: BP 80 - end of helix Processing helix chain 'BP' and resid 142 through 147 removed outlier: 4.415A pdb=" N PHEBP 146 " --> pdb=" O ASPBP 142 " (cutoff:3.500A) Processing helix chain 'BP' and resid 161 through 169 removed outlier: 3.663A pdb=" N ASPBP 169 " --> pdb=" O TRPBP 165 " (cutoff:3.500A) Processing helix chain 'BP' and resid 170 through 178 Proline residue: BP 174 - end of helix Proline residue: BP 177 - end of helix Processing helix chain 'Ad' and resid 29 through 35 removed outlier: 6.189A pdb=" N HISAd 33 " --> pdb=" O PROAd 29 " (cutoff:3.500A) removed outlier: 4.929A pdb=" N METAd 34 " --> pdb=" O GLUAd 30 " (cutoff:3.500A) Processing helix chain 'Ad' and resid 40 through 46 removed outlier: 5.455A pdb=" N GLYAd 44 " --> pdb=" O METAd 40 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N GLNAd 45 " --> pdb=" O SERAd 41 " (cutoff:3.500A) Processing helix chain 'Ad' and resid 62 through 73 removed outlier: 4.254A pdb=" N GLUAd 68 " --> pdb=" O ASPAd 64 " (cutoff:3.500A) removed outlier: 4.789A pdb=" N LEUAd 72 " --> pdb=" O GLUAd 68 " (cutoff:3.500A) Proline residue: Ad 73 - end of helix Processing helix chain 'Ad' and resid 80 through 86 removed outlier: 3.524A pdb=" N GLNAd 85 " --> pdb=" O PHEAd 81 " (cutoff:3.500A) removed outlier: 5.801A pdb=" N ALAAd 86 " --> pdb=" O ARGAd 82 " (cutoff:3.500A) Processing helix chain 'Ad' and resid 192 through 205 removed outlier: 4.180A pdb=" N GLUAd 199 " --> pdb=" O ARGAd 195 " (cutoff:3.500A) removed outlier: 4.409A pdb=" N LYSAd 202 " --> pdb=" O GLUAd 198 " (cutoff:3.500A) removed outlier: 3.948A pdb=" N ILEAd 203 " --> pdb=" O GLUAd 199 " (cutoff:3.500A) Proline residue: Ad 205 - end of helix Processing helix chain 'Ad' and resid 222 through 237 removed outlier: 3.616A pdb=" N ALAAd 227 " --> pdb=" O LEUAd 223 " (cutoff:3.500A) removed outlier: 3.643A pdb=" N HISAd 230 " --> pdb=" O ARGAd 226 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N HISAd 231 " --> pdb=" O ALAAd 227 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N GLYAd 235 " --> pdb=" O HISAd 231 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N GLYAd 237 " --> pdb=" O LEUAd 233 " (cutoff:3.500A) Processing helix chain 'BF' and resid 31 through 40 removed outlier: 3.729A pdb=" N GLUBF 38 " --> pdb=" O GLUBF 34 " (cutoff:3.500A) Processing helix chain 'BF' and resid 42 through 52 removed outlier: 3.624A pdb=" N VALBF 46 " --> pdb=" O ASPBF 42 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N ALABF 47 " --> pdb=" O GLUBF 43 " (cutoff:3.500A) removed outlier: 3.973A pdb=" N SERBF 48 " --> pdb=" O ALABF 44 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N TYRBF 50 " --> pdb=" O VALBF 46 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N LYSBF 51 " --> pdb=" O ALABF 47 " (cutoff:3.500A) Proline residue: BF 52 - end of helix Processing helix chain 'BF' and resid 64 through 69 removed outlier: 3.758A pdb=" N GLYBF 69 " --> pdb=" O PROBF 65 " (cutoff:3.500A) Processing helix chain 'BF' and resid 80 through 85 removed outlier: 3.630A pdb=" N METBF 84 " --> pdb=" O SERBF 80 " (cutoff:3.500A) Processing helix chain 'BF' and resid 91 through 99 Processing helix chain 'BF' and resid 102 through 107 removed outlier: 4.029A pdb=" N ILEBF 106 " --> pdb=" O ASPBF 102 " (cutoff:3.500A) Processing helix chain 'Av' and resid 42 through 54 removed outlier: 3.878A pdb=" N ASPAv 47 " --> pdb=" O LYSAv 43 " (cutoff:3.500A) removed outlier: 3.875A pdb=" N ARGAv 48 " --> pdb=" O THRAv 44 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N ARGAv 51 " --> pdb=" O ASPAv 47 " (cutoff:3.500A) removed outlier: 4.406A pdb=" N LYSAv 52 " --> pdb=" O ARGAv 48 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N PHEAv 53 " --> pdb=" O GLUAv 49 " (cutoff:3.500A) Processing helix chain 'Av' and resid 76 through 81 removed outlier: 4.737A pdb=" N GLYAv 80 " --> pdb=" O METAv 76 " (cutoff:3.500A) removed outlier: 4.988A pdb=" N LYSAv 81 " --> pdb=" O TYRAv 77 " (cutoff:3.500A) No H-bonds generated for 'chain 'Av' and resid 76 through 81' Processing helix chain 'Av' and resid 107 through 115 removed outlier: 4.351A pdb=" N ILEAv 113 " --> pdb=" O PHEAv 109 " (cutoff:3.500A) Processing helix chain 'Av' and resid 119 through 130 removed outlier: 4.012A pdb=" N ASPAv 125 " --> pdb=" O GLUAv 121 " (cutoff:3.500A) removed outlier: 4.296A pdb=" N ARGAv 126 " --> pdb=" O GLUAv 122 " (cutoff:3.500A) Processing helix chain 'Av' and resid 134 through 162 removed outlier: 4.594A pdb=" N ARGAv 138 " --> pdb=" O SERAv 134 " (cutoff:3.500A) removed outlier: 5.074A pdb=" N GLNAv 139 " --> pdb=" O PROAv 135 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N ASPAv 142 " --> pdb=" O ARGAv 138 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N GLNAv 144 " --> pdb=" O VALAv 140 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N ARGAv 147 " --> pdb=" O ASNAv 143 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N GLYAv 150 " --> pdb=" O LYSAv 146 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N VALAv 152 " --> pdb=" O ARGAv 148 " (cutoff:3.500A) removed outlier: 3.500A pdb=" N SERAv 157 " --> pdb=" O ALAAv 153 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N LEUAv 159 " --> pdb=" O ARGAv 155 " (cutoff:3.500A) removed outlier: 4.881A pdb=" N ILEAv 161 " --> pdb=" O SERAv 157 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N LYSAv 162 " --> pdb=" O METAv 158 " (cutoff:3.500A) Processing helix chain 'Af' and resid 23 through 46 removed outlier: 3.924A pdb=" N LYSAf 33 " --> pdb=" O GLNAf 29 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N ARGAf 34 " --> pdb=" O GLNAf 30 " (cutoff:3.500A) removed outlier: 4.177A pdb=" N METAf 39 " --> pdb=" O ASPAf 35 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N ALAAf 42 " --> pdb=" O GLUAf 38 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N ILEAf 43 " --> pdb=" O METAf 39 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N ARGAf 45 " --> pdb=" O GLUAf 41 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N GLUAf 46 " --> pdb=" O ALAAf 42 " (cutoff:3.500A) Processing helix chain 'Af' and resid 80 through 89 removed outlier: 4.409A pdb=" N ARGAf 85 " --> pdb=" O TYRAf 81 " (cutoff:3.500A) removed outlier: 4.969A pdb=" N GLNAf 86 " --> pdb=" O GLYAf 82 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N GLYAf 89 " --> pdb=" O ARGAf 85 " (cutoff:3.500A) Processing helix chain 'Af' and resid 95 through 106 removed outlier: 3.798A pdb=" N GLNAf 100 " --> pdb=" O PROAf 96 " (cutoff:3.500A) removed outlier: 5.121A pdb=" N GLNAf 105 " --> pdb=" O GLUAf 101 " (cutoff:3.500A) removed outlier: 4.299A pdb=" N LEUAf 106 " --> pdb=" O LEUAf 102 " (cutoff:3.500A) Processing helix chain 'Af' and resid 125 through 131 removed outlier: 4.324A pdb=" N GLUAf 129 " --> pdb=" O ALAAf 125 " (cutoff:3.500A) Processing helix chain 'Af' and resid 116 through 121 removed outlier: 3.563A pdb=" N ALAAf 120 " --> pdb=" O PROAf 117 " (cutoff:3.500A) removed outlier: 5.079A pdb=" N GLYAf 121 " --> pdb=" O PROAf 118 " (cutoff:3.500A) Processing helix chain 'Af' and resid 149 through 154 removed outlier: 3.579A pdb=" N ARGAf 152 " --> pdb=" O GLNAf 149 " (cutoff:3.500A) removed outlier: 3.656A pdb=" N SERAf 153 " --> pdb=" O PROAf 150 " (cutoff:3.500A) removed outlier: 5.331A pdb=" N GLUAf 154 " --> pdb=" O SERAf 151 " (cutoff:3.500A) No H-bonds generated for 'chain 'Af' and resid 149 through 154' Processing helix chain 'As' and resid 53 through 68 removed outlier: 4.357A pdb=" N GLUAs 65 " --> pdb=" O LEUAs 61 " (cutoff:3.500A) removed outlier: 4.329A pdb=" N CYSAs 66 " --> pdb=" O VALAs 62 " (cutoff:3.500A) Proline residue: As 68 - end of helix Processing helix chain 'As' and resid 83 through 94 removed outlier: 3.705A pdb=" N GLUAs 92 " --> pdb=" O LYSAs 88 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N ARGAs 93 " --> pdb=" O LYSAs 89 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N ASNAs 94 " --> pdb=" O LEUAs 90 " (cutoff:3.500A) Processing helix chain 'As' and resid 97 through 104 removed outlier: 3.895A pdb=" N LEUAs 104 " --> pdb=" O GLNAs 100 " (cutoff:3.500A) Processing helix chain 'As' and resid 105 through 115 removed outlier: 6.423A pdb=" N VALAs 109 " --> pdb=" O ASPAs 105 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N GLUAs 111 " --> pdb=" O ASPAs 107 " (cutoff:3.500A) Processing helix chain 'As' and resid 120 through 141 removed outlier: 3.962A pdb=" N ALAAs 128 " --> pdb=" O VALAs 124 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N THRAs 130 " --> pdb=" O GLUAs 126 " (cutoff:3.500A) removed outlier: 4.594A pdb=" N THRAs 133 " --> pdb=" O ARGAs 129 " (cutoff:3.500A) Proline residue: As 134 - end of helix removed outlier: 3.771A pdb=" N GLNAs 137 " --> pdb=" O THRAs 133 " (cutoff:3.500A) removed outlier: 4.152A pdb=" N GLUAs 139 " --> pdb=" O LEUAs 135 " (cutoff:3.500A) removed outlier: 3.926A pdb=" N VALAs 140 " --> pdb=" O LYSAs 136 " (cutoff:3.500A) removed outlier: 4.323A pdb=" N SERAs 141 " --> pdb=" O GLNAs 137 " (cutoff:3.500A) Processing helix chain 'Ae' and resid 9 through 17 removed outlier: 3.767A pdb=" N LEUAe 16 " --> pdb=" O ASNAe 12 " (cutoff:3.500A) removed outlier: 3.946A pdb=" N GLYAe 17 " --> pdb=" O LEUAe 13 " (cutoff:3.500A) Processing helix chain 'Ae' and resid 78 through 85 removed outlier: 4.329A pdb=" N HISAe 83 " --> pdb=" O GLNAe 79 " (cutoff:3.500A) Processing helix chain 'Ae' and resid 137 through 142 removed outlier: 4.285A pdb=" N TRPAe 141 " --> pdb=" O ALAAe 137 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N GLUAe 142 " --> pdb=" O PROAe 138 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ae' and resid 137 through 142' Processing helix chain 'Ae' and resid 147 through 152 removed outlier: 4.055A pdb=" N THRAe 151 " --> pdb=" O TYRAe 147 " (cutoff:3.500A) Proline residue: Ae 152 - end of helix No H-bonds generated for 'chain 'Ae' and resid 147 through 152' Processing helix chain 'Ae' and resid 195 through 209 removed outlier: 3.611A pdb=" N PHEAe 203 " --> pdb=" O ALAAe 199 " (cutoff:3.500A) Processing helix chain 'Ae' and resid 251 through 274 removed outlier: 3.655A pdb=" N METAe 260 " --> pdb=" O ILEAe 256 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N TRPAe 264 " --> pdb=" O METAe 260 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N LEUAe 265 " --> pdb=" O GLUAe 261 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N GLYAe 274 " --> pdb=" O METAe 270 " (cutoff:3.500A) Processing helix chain 'Ae' and resid 71 through 76 removed outlier: 4.542A pdb=" N ASNAe 74 " --> pdb=" O GLYAe 71 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N THRAe 75 " --> pdb=" O ASNAe 72 " (cutoff:3.500A) Processing helix chain 'Ac' and resid 65 through 83 removed outlier: 3.930A pdb=" N LEUAc 74 " --> pdb=" O GLUAc 70 " (cutoff:3.500A) removed outlier: 3.935A pdb=" N ARGAc 77 " --> pdb=" O TYRAc 73 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N GLNAc 80 " --> pdb=" O GLUAc 76 " (cutoff:3.500A) removed outlier: 4.153A pdb=" N SERAc 83 " --> pdb=" O GLNAc 79 " (cutoff:3.500A) Processing helix chain 'Ac' and resid 90 through 99 removed outlier: 3.734A pdb=" N SERAc 97 " --> pdb=" O ALAAc 93 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ARGAc 98 " --> pdb=" O PHEAc 94 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N GLYAc 99 " --> pdb=" O PHEAc 95 " (cutoff:3.500A) Processing helix chain 'Ac' and resid 109 through 117 removed outlier: 3.618A pdb=" N ILEAc 113 " --> pdb=" O ASPAc 109 " (cutoff:3.500A) Processing helix chain 'Ac' and resid 120 through 134 removed outlier: 3.708A pdb=" N GLNAc 124 " --> pdb=" O LEUAc 120 " (cutoff:3.500A) removed outlier: 4.142A pdb=" N VALAc 130 " --> pdb=" O ALAAc 126 " (cutoff:3.500A) removed outlier: 3.971A pdb=" N GLNAc 132 " --> pdb=" O LYSAc 128 " (cutoff:3.500A) Processing helix chain 'Ac' and resid 141 through 146 removed outlier: 3.697A pdb=" N LEUAc 145 " --> pdb=" O THRAc 141 " (cutoff:3.500A) removed outlier: 5.163A pdb=" N TRPAc 146 " --> pdb=" O SERAc 142 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ac' and resid 141 through 146' Processing helix chain 'Ac' and resid 147 through 152 removed outlier: 4.808A pdb=" N LEUAc 151 " --> pdb=" O GLNAc 147 " (cutoff:3.500A) removed outlier: 4.468A pdb=" N GLYAc 152 " --> pdb=" O PROAc 148 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ac' and resid 147 through 152' Processing helix chain 'Ac' and resid 193 through 207 removed outlier: 3.784A pdb=" N ILEAc 202 " --> pdb=" O ALAAc 198 " (cutoff:3.500A) removed outlier: 4.184A pdb=" N GLNAc 205 " --> pdb=" O ALAAc 201 " (cutoff:3.500A) Processing helix chain 'Ac' and resid 245 through 250 removed outlier: 3.825A pdb=" N PHEAc 249 " --> pdb=" O GLNAc 245 " (cutoff:3.500A) removed outlier: 5.408A pdb=" N GLUAc 250 " --> pdb=" O PHEAc 246 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ac' and resid 245 through 250' Processing helix chain 'Ac' and resid 260 through 269 removed outlier: 4.959A pdb=" N LEUAc 265 " --> pdb=" O ARGAc 261 " (cutoff:3.500A) removed outlier: 4.870A pdb=" N GLNAc 266 " --> pdb=" O HISAc 262 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N TYRAc 267 " --> pdb=" O GLUAc 263 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N SERAc 268 " --> pdb=" O LEUAc 264 " (cutoff:3.500A) removed outlier: 5.038A pdb=" N ASPAc 269 " --> pdb=" O LEUAc 265 " (cutoff:3.500A) Processing helix chain 'Ac' and resid 273 through 284 removed outlier: 3.940A pdb=" N LYSAc 278 " --> pdb=" O ALAAc 274 " (cutoff:3.500A) removed outlier: 4.019A pdb=" N ALAAc 279 " --> pdb=" O GLUAc 275 " (cutoff:3.500A) removed outlier: 4.732A pdb=" N ILEAc 283 " --> pdb=" O ALAAc 279 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 59 through 64 removed outlier: 4.019A pdb=" N THRAh 63 " --> pdb=" O PROAh 59 " (cutoff:3.500A) removed outlier: 5.918A pdb=" N VALAh 64 " --> pdb=" O LYSAh 60 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ah' and resid 59 through 64' Processing helix chain 'Ah' and resid 72 through 77 removed outlier: 6.092A pdb=" N ARGAh 76 " --> pdb=" O SERAh 72 " (cutoff:3.500A) removed outlier: 6.039A pdb=" N ASNAh 77 " --> pdb=" O TYRAh 73 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ah' and resid 72 through 77' Processing helix chain 'Ah' and resid 78 through 83 removed outlier: 4.199A pdb=" N SERAh 82 " --> pdb=" O ARGAh 78 " (cutoff:3.500A) removed outlier: 4.823A pdb=" N ASPAh 83 " --> pdb=" O THRAh 79 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ah' and resid 78 through 83' Processing helix chain 'Ah' and resid 99 through 104 removed outlier: 3.939A pdb=" N ASPAh 104 " --> pdb=" O ASPAh 100 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 105 through 128 removed outlier: 3.986A pdb=" N ARGAh 109 " --> pdb=" O ARGAh 105 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N TYRAh 112 " --> pdb=" O GLUAh 108 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N ARGAh 113 " --> pdb=" O ARGAh 109 " (cutoff:3.500A) removed outlier: 4.316A pdb=" N PHEAh 114 " --> pdb=" O LEUAh 110 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N TYRAh 115 " --> pdb=" O SERAh 111 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N GLUAh 118 " --> pdb=" O PHEAh 114 " (cutoff:3.500A) removed outlier: 5.409A pdb=" N THRAh 119 " --> pdb=" O TYRAh 115 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N LYSAh 120 " --> pdb=" O ASNAh 116 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N TRPAh 123 " --> pdb=" O THRAh 119 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N THRAh 128 " --> pdb=" O LYSAh 124 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 129 through 143 removed outlier: 5.156A pdb=" N GLYAh 133 " --> pdb=" O PROAh 129 " (cutoff:3.500A) removed outlier: 5.032A pdb=" N METAh 134 " --> pdb=" O GLUAh 130 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N LEUAh 135 " --> pdb=" O LEUAh 131 " (cutoff:3.500A) removed outlier: 4.108A pdb=" N LEUAh 136 " --> pdb=" O ILEAh 132 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N THRAh 140 " --> pdb=" O LEUAh 136 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N GLYAh 143 " --> pdb=" O GLUAh 139 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 149 through 170 removed outlier: 3.551A pdb=" N LEUAh 153 " --> pdb=" O ALAAh 149 " (cutoff:3.500A) removed outlier: 4.126A pdb=" N ASPAh 154 " --> pdb=" O PROAh 150 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N HISAh 158 " --> pdb=" O ASPAh 154 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N ARGAh 164 " --> pdb=" O THRAh 160 " (cutoff:3.500A) removed outlier: 4.322A pdb=" N TYRAh 165 " --> pdb=" O ARGAh 161 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N ILEAh 169 " --> pdb=" O TYRAh 165 " (cutoff:3.500A) removed outlier: 4.143A pdb=" N GLYAh 170 " --> pdb=" O TRPAh 166 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 199 through 219 removed outlier: 3.889A pdb=" N METAh 207 " --> pdb=" O ARGAh 203 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N ASPAh 208 " --> pdb=" O HISAh 204 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N LYSAh 216 " --> pdb=" O ALAAh 212 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 224 through 230 removed outlier: 4.197A pdb=" N ARGAh 228 " --> pdb=" O TYRAh 224 " (cutoff:3.500A) removed outlier: 4.121A pdb=" N TRPAh 229 " --> pdb=" O LEUAh 225 " (cutoff:3.500A) removed outlier: 6.078A pdb=" N GLYAh 230 " --> pdb=" O TRPAh 226 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ah' and resid 224 through 230' Processing helix chain 'Ah' and resid 260 through 266 removed outlier: 3.557A pdb=" N VALAh 264 " --> pdb=" O THRAh 260 " (cutoff:3.500A) Proline residue: Ah 266 - end of helix Processing helix chain 'Ah' and resid 269 through 277 removed outlier: 4.353A pdb=" N ILEAh 273 " --> pdb=" O THRAh 269 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N ARGAh 274 " --> pdb=" O HISAh 270 " (cutoff:3.500A) removed outlier: 3.540A pdb=" N GLUAh 275 " --> pdb=" O GLUAh 271 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N ARGAh 276 " --> pdb=" O GLNAh 272 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 290 through 295 removed outlier: 5.674A pdb=" N SERAh 294 " --> pdb=" O GLUAh 290 " (cutoff:3.500A) Proline residue: Ah 295 - end of helix No H-bonds generated for 'chain 'Ah' and resid 290 through 295' Processing helix chain 'Ah' and resid 309 through 322 removed outlier: 3.582A pdb=" N LYSAh 321 " --> pdb=" O ASPAh 317 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N ALAAh 322 " --> pdb=" O LEUAh 318 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 335 through 349 removed outlier: 3.563A pdb=" N LEUAh 341 " --> pdb=" O ASPAh 337 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N PHEAh 342 " --> pdb=" O VALAh 338 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N TYRAh 343 " --> pdb=" O ARGAh 339 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N ASNAh 347 " --> pdb=" O TYRAh 343 " (cutoff:3.500A) Proline residue: Ah 348 - end of helix Processing helix chain 'Ah' and resid 350 through 357 removed outlier: 3.644A pdb=" N ASPAh 355 " --> pdb=" O ARGAh 351 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 360 through 366 removed outlier: 3.987A pdb=" N VALAh 364 " --> pdb=" O TRPAh 360 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 368 through 388 removed outlier: 3.844A pdb=" N ALAAh 372 " --> pdb=" O GLNAh 368 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N LEUAh 374 " --> pdb=" O VALAh 370 " (cutoff:3.500A) removed outlier: 5.108A pdb=" N GLUAh 376 " --> pdb=" O ALAAh 372 " (cutoff:3.500A) removed outlier: 5.316A pdb=" N LYSAh 377 " --> pdb=" O GLUAh 373 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N ALAAh 381 " --> pdb=" O LYSAh 377 " (cutoff:3.500A) removed outlier: 3.939A pdb=" N ASNAh 386 " --> pdb=" O ARGAh 382 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 390 through 402 removed outlier: 3.689A pdb=" N VALAh 394 " --> pdb=" O ASNAh 390 " (cutoff:3.500A) removed outlier: 3.997A pdb=" N ARGAh 395 " --> pdb=" O ALAAh 391 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N GLUAh 400 " --> pdb=" O ALAAh 396 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 406 through 411 removed outlier: 3.644A pdb=" N THRAh 410 " --> pdb=" O ASPAh 406 " (cutoff:3.500A) Proline residue: Ah 411 - end of helix No H-bonds generated for 'chain 'Ah' and resid 406 through 411' Processing helix chain 'Ah' and resid 412 through 431 removed outlier: 3.660A pdb=" N ALAAh 417 " --> pdb=" O LYSAh 413 " (cutoff:3.500A) removed outlier: 3.612A pdb=" N ALAAh 418 " --> pdb=" O THRAh 414 " (cutoff:3.500A) removed outlier: 4.045A pdb=" N GLUAh 425 " --> pdb=" O CYSAh 421 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N ARGAh 428 " --> pdb=" O THRAh 424 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 433 through 443 removed outlier: 4.341A pdb=" N ALAAh 437 " --> pdb=" O THRAh 433 " (cutoff:3.500A) removed outlier: 4.399A pdb=" N ALAAh 438 " --> pdb=" O ALAAh 434 " (cutoff:3.500A) removed outlier: 5.478A pdb=" N LEUAh 443 " --> pdb=" O LEUAh 439 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 444 through 452 removed outlier: 3.901A pdb=" N GLNAh 450 " --> pdb=" O METAh 446 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N GLYAh 451 " --> pdb=" O GLUAh 447 " (cutoff:3.500A) removed outlier: 4.118A pdb=" N METAh 452 " --> pdb=" O ARGAh 448 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 453 through 481 removed outlier: 3.766A pdb=" N TYRAh 460 " --> pdb=" O ALAAh 456 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N ARGAh 461 " --> pdb=" O PHEAh 457 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N HISAh 462 " --> pdb=" O LEUAh 458 " (cutoff:3.500A) removed outlier: 3.622A pdb=" N ASPAh 465 " --> pdb=" O ARGAh 461 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N ALAAh 466 " --> pdb=" O HISAh 462 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N PHEAh 479 " --> pdb=" O TRPAh 475 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N ALAAh 480 " --> pdb=" O ALAAh 476 " (cutoff:3.500A) removed outlier: 5.034A pdb=" N GLYAh 481 " --> pdb=" O GLYAh 477 " (cutoff:3.500A) Processing helix chain 'Ah' and resid 485 through 497 removed outlier: 3.728A pdb=" N LEUAh 489 " --> pdb=" O GLUAh 485 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N ASPAh 490 " --> pdb=" O GLUAh 486 " (cutoff:3.500A) removed outlier: 4.355A pdb=" N LEUAh 493 " --> pdb=" O LEUAh 489 " (cutoff:3.500A) removed outlier: 4.182A pdb=" N GLUAh 494 " --> pdb=" O ASPAh 490 " (cutoff:3.500A) Processing helix chain 'BD' and resid 36 through 53 removed outlier: 3.514A pdb=" N HISBD 45 " --> pdb=" O CYSBD 41 " (cutoff:3.500A) removed outlier: 3.607A pdb=" N ARGBD 49 " --> pdb=" O HISBD 45 " (cutoff:3.500A) removed outlier: 4.505A pdb=" N GLYBD 53 " --> pdb=" O ARGBD 49 " (cutoff:3.500A) Processing helix chain 'BD' and resid 77 through 88 removed outlier: 3.870A pdb=" N LEUBD 82 " --> pdb=" O ALABD 78 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N ARGBD 87 " --> pdb=" O ASPBD 83 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N METBD 88 " --> pdb=" O ALABD 84 " (cutoff:3.500A) Processing helix chain 'BD' and resid 89 through 97 removed outlier: 3.953A pdb=" N ALABD 94 " --> pdb=" O PROBD 90 " (cutoff:3.500A) Processing helix chain 'Ay' and resid 68 through 76 removed outlier: 3.537A pdb=" N TYRAy 72 " --> pdb=" O TYRAy 68 " (cutoff:3.500A) removed outlier: 6.117A pdb=" N GLUAy 73 " --> pdb=" O LYSAy 69 " (cutoff:3.500A) removed outlier: 4.122A pdb=" N ALAAy 74 " --> pdb=" O GLNAy 70 " (cutoff:3.500A) removed outlier: 4.711A pdb=" N LYSAy 76 " --> pdb=" O TYRAy 72 " (cutoff:3.500A) Processing helix chain 'Ay' and resid 78 through 116 removed outlier: 3.593A pdb=" N ASNAy 83 " --> pdb=" O GLUAy 79 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N ASNAy 92 " --> pdb=" O VALAy 88 " (cutoff:3.500A) removed outlier: 5.024A pdb=" N GLUAy 99 " --> pdb=" O ARGAy 95 " (cutoff:3.500A) Proline residue: Ay 100 - end of helix removed outlier: 4.047A pdb=" N LYSAy 104 " --> pdb=" O PROAy 100 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N ASNAy 107 " --> pdb=" O LEUAy 103 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N TRPAy 110 " --> pdb=" O SERAy 106 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N TRPAy 112 " --> pdb=" O GLUAy 108 " (cutoff:3.500A) Processing helix chain 'Ay' and resid 117 through 126 removed outlier: 3.613A pdb=" N GLNAy 123 " --> pdb=" O PROAy 119 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N GLUAy 124 " --> pdb=" O THRAy 120 " (cutoff:3.500A) Processing helix chain 'Ay' and resid 128 through 137 removed outlier: 3.731A pdb=" N ARGAy 133 " --> pdb=" O LEUAy 129 " (cutoff:3.500A) removed outlier: 4.373A pdb=" N ARGAy 134 " --> pdb=" O ASPAy 130 " (cutoff:3.500A) removed outlier: 3.745A pdb=" N VALAy 135 " --> pdb=" O GLUAy 131 " (cutoff:3.500A) removed outlier: 4.135A pdb=" N ARGAy 137 " --> pdb=" O ARGAy 133 " (cutoff:3.500A) Processing helix chain 'Ag' and resid 28 through 33 removed outlier: 4.537A pdb=" N LEUAg 32 " --> pdb=" O VALAg 28 " (cutoff:3.500A) removed outlier: 4.234A pdb=" N ASNAg 33 " --> pdb=" O PROAg 29 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ag' and resid 28 through 33' Processing helix chain 'Ag' and resid 56 through 63 removed outlier: 6.327A pdb=" N TRPAg 63 " --> pdb=" O GLUAg 59 " (cutoff:3.500A) Processing helix chain 'Ag' and resid 79 through 91 removed outlier: 3.521A pdb=" N LEUAg 83 " --> pdb=" O SERAg 79 " (cutoff:3.500A) removed outlier: 4.044A pdb=" N ALAAg 86 " --> pdb=" O ALAAg 82 " (cutoff:3.500A) removed outlier: 3.764A pdb=" N GLUAg 88 " --> pdb=" O LYSAg 84 " (cutoff:3.500A) removed outlier: 4.851A pdb=" N METAg 89 " --> pdb=" O GLUAg 85 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N VALAg 90 " --> pdb=" O ALAAg 86 " (cutoff:3.500A) Proline residue: Ag 91 - end of helix Processing helix chain 'Ag' and resid 95 through 100 removed outlier: 4.422A pdb=" N VALAg 99 " --> pdb=" O GLUAg 95 " (cutoff:3.500A) Proline residue: Ag 100 - end of helix No H-bonds generated for 'chain 'Ag' and resid 95 through 100' Processing helix chain 'Ag' and resid 116 through 121 removed outlier: 4.182A pdb=" N ASNAg 120 " --> pdb=" O ARGAg 116 " (cutoff:3.500A) removed outlier: 5.253A pdb=" N TYRAg 121 " --> pdb=" O TRPAg 117 " (cutoff:3.500A) No H-bonds generated for 'chain 'Ag' and resid 116 through 121' Processing helix chain 'Ag' and resid 122 through 135 removed outlier: 3.890A pdb=" N TYRAg 129 " --> pdb=" O HISAg 125 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N GLNAg 132 " --> pdb=" O ARGAg 128 " (cutoff:3.500A) Processing helix chain 'Ag' and resid 158 through 180 removed outlier: 4.657A pdb=" N THRAg 162 " --> pdb=" O ASPAg 158 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N ILEAg 165 " --> pdb=" O GLUAg 161 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N TYRAg 168 " --> pdb=" O ALAAg 164 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N ARGAg 169 " --> pdb=" O ILEAg 165 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N ARGAg 177 " --> pdb=" O ILEAg 173 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N VALAg 180 " --> pdb=" O ASNAg 176 " (cutoff:3.500A) Processing helix chain 'Ag' and resid 181 through 223 removed outlier: 3.577A pdb=" N GLUAg 188 " --> pdb=" O ARGAg 184 " (cutoff:3.500A) removed outlier: 4.085A pdb=" N TYRAg 195 " --> pdb=" O GLUAg 191 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N THRAg 204 " --> pdb=" O LYSAg 200 " (cutoff:3.500A) removed outlier: 3.973A pdb=" N PHEAg 205 " --> pdb=" O VALAg 201 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N TRPAg 206 " --> pdb=" O GLNAg 202 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N LEUAg 212 " --> pdb=" O ASNAg 208 " (cutoff:3.500A) removed outlier: 5.028A pdb=" N GLYAg 223 " --> pdb=" O METAg 219 " (cutoff:3.500A) Processing helix chain 'Ax' and resid 60 through 68 removed outlier: 3.534A pdb=" N GLNAx 66 " --> pdb=" O ARGAx 62 " (cutoff:3.500A) removed outlier: 4.356A pdb=" N LYSAx 68 " --> pdb=" O TRPAx 64 " (cutoff:3.500A) Processing helix chain 'Ax' and resid 139 through 144 removed outlier: 5.530A pdb=" N LYSAx 144 " --> pdb=" O VALAx 140 " (cutoff:3.500A) Processing helix chain 'Ax' and resid 166 through 172 Processing helix chain 'Ax' and resid 191 through 196 removed outlier: 5.444A pdb=" N LEUAx 196 " --> pdb=" O THRAx 192 " (cutoff:3.500A) Processing helix chain 'Ax' and resid 207 through 212 removed outlier: 5.487A pdb=" N PHEAx 212 " --> pdb=" O METAx 208 " (cutoff:3.500A) Processing helix chain 'BL' and resid 94 through 99 removed outlier: 4.137A pdb=" N METBL 98 " --> pdb=" O GLYBL 94 " (cutoff:3.500A) removed outlier: 4.188A pdb=" N SERBL 99 " --> pdb=" O ALABL 95 " (cutoff:3.500A) No H-bonds generated for 'chain 'BL' and resid 94 through 99' Processing helix chain 'BL' and resid 213 through 218 removed outlier: 3.831A pdb=" N VALBL 217 " --> pdb=" O SERBL 213 " (cutoff:3.500A) removed outlier: 5.882A pdb=" N THRBL 218 " --> pdb=" O LEUBL 214 " (cutoff:3.500A) No H-bonds generated for 'chain 'BL' and resid 213 through 218' Processing helix chain 'BL' and resid 291 through 296 removed outlier: 4.615A pdb=" N GLUBL 296 " --> pdb=" O ARGBL 292 " (cutoff:3.500A) Processing helix chain 'BL' and resid 353 through 358 removed outlier: 3.547A pdb=" N ASNBL 357 " --> pdb=" O GLYBL 353 " (cutoff:3.500A) Processing helix chain 'BL' and resid 361 through 368 removed outlier: 4.477A pdb=" N LEUBL 365 " --> pdb=" O THRBL 361 " (cutoff:3.500A) removed outlier: 3.974A pdb=" N LYSBL 366 " --> pdb=" O VALBL 362 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N LYSBL 368 " --> pdb=" O ASPBL 364 " (cutoff:3.500A) Processing helix chain 'BL' and resid 371 through 376 removed outlier: 3.868A pdb=" N ARGBL 375 " --> pdb=" O SERBL 371 " (cutoff:3.500A) removed outlier: 5.568A pdb=" N ASPBL 376 " --> pdb=" O TRPBL 372 " (cutoff:3.500A) No H-bonds generated for 'chain 'BL' and resid 371 through 376' Processing helix chain 'BL' and resid 280 through 285 removed outlier: 6.374A pdb=" N ASNBL 284 " --> pdb=" O VALBL 281 " (cutoff:3.500A) removed outlier: 4.583A pdb=" N LYSBL 285 " --> pdb=" O METBL 282 " (cutoff:3.500A) Processing helix chain 'BO' and resid 91 through 96 Proline residue: BO 95 - end of helix No H-bonds generated for 'chain 'BO' and resid 91 through 96' Processing helix chain 'BO' and resid 179 through 184 Processing helix chain 'BO' and resid 171 through 176 removed outlier: 4.918A pdb=" N ASNBO 175 " --> pdb=" O ARGBO 172 " (cutoff:3.500A) removed outlier: 4.309A pdb=" N HISBO 176 " --> pdb=" O HISBO 173 " (cutoff:3.500A) Processing helix chain 'BG' and resid 1276 through 1281 removed outlier: 3.726A pdb=" N LEUBG1280 " --> pdb=" O PHEBG1276 " (cutoff:3.500A) removed outlier: 4.954A pdb=" N LEUBG1281 " --> pdb=" O THRBG1277 " (cutoff:3.500A) No H-bonds generated for 'chain 'BG' and resid 1276 through 1281' Processing helix chain 'BG' and resid 1319 through 1331 removed outlier: 3.980A pdb=" N LEUBG1323 " --> pdb=" O SERBG1319 " (cutoff:3.500A) removed outlier: 3.796A pdb=" N TYRBG1324 " --> pdb=" O TYRBG1320 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N GLNBG1328 " --> pdb=" O TYRBG1324 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N GLYBG1331 " --> pdb=" O LYSBG1327 " (cutoff:3.500A) Processing helix chain 'BG' and resid 1336 through 1341 removed outlier: 4.657A pdb=" N GLUBG1340 " --> pdb=" O GLNBG1336 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N VALBG1341 " --> pdb=" O PROBG1337 " (cutoff:3.500A) No H-bonds generated for 'chain 'BG' and resid 1336 through 1341' Processing sheet with id= 1, first strand: chain 'A' and resid 132 through 137 removed outlier: 3.756A pdb=" N LYS A 137 " --> pdb=" O THR A 328 " (cutoff:3.500A) removed outlier: 4.658A pdb=" N THR A 328 " --> pdb=" O LYS A 137 " (cutoff:3.500A) removed outlier: 7.072A pdb=" N TYR A 329 " --> pdb=" O GLN A 242 " (cutoff:3.500A) removed outlier: 4.886A pdb=" N GLN A 242 " --> pdb=" O TYR A 329 " (cutoff:3.500A) Processing sheet with id= 2, first strand: chain 'A' and resid 138 through 145 removed outlier: 3.635A pdb=" N PHE A 139 " --> pdb=" O ALA A 155 " (cutoff:3.500A) removed outlier: 5.444A pdb=" N ASN A 149 " --> pdb=" O ASP A 145 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'A' and resid 164 through 169 removed outlier: 3.643A pdb=" N LYS A 165 " --> pdb=" O TYR A 179 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N LYS A 177 " --> pdb=" O SER A 167 " (cutoff:3.500A) removed outlier: 6.447A pdb=" N THR A 175 " --> pdb=" O ARG A 169 " (cutoff:3.500A) removed outlier: 4.381A pdb=" N ASP A 176 " --> pdb=" O VAL A 214 " (cutoff:3.500A) Processing sheet with id= 4, first strand: chain 'A' and resid 235 through 238 removed outlier: 5.224A pdb=" N GLN A 235 " --> pdb=" O VAL A 306 " (cutoff:3.500A) Processing sheet with id= 5, first strand: chain 'B' and resid 71 through 74 removed outlier: 3.600A pdb=" N LEU B 107 " --> pdb=" O ILE B 90 " (cutoff:3.500A) removed outlier: 5.316A pdb=" N ILE B 90 " --> pdb=" O LEU B 107 " (cutoff:3.500A) Processing sheet with id= 6, first strand: chain 'B' and resid 212 through 215 removed outlier: 3.946A pdb=" N THR B 325 " --> pdb=" O GLY B 246 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N ALA B 247 " --> pdb=" O ARG B 275 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N LYS B 277 " --> pdb=" O ALA B 247 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N PHE B 249 " --> pdb=" O LYS B 277 " (cutoff:3.500A) Processing sheet with id= 7, first strand: chain 'B' and resid 410 through 415 removed outlier: 3.581A pdb=" N GLN B 422 " --> pdb=" O ALA B 413 " (cutoff:3.500A) removed outlier: 4.290A pdb=" N THR B 420 " --> pdb=" O ASP B 415 " (cutoff:3.500A) Processing sheet with id= 8, first strand: chain 'C' and resid 113 through 116 Processing sheet with id= 9, first strand: chain 'C' and resid 121 through 124 removed outlier: 7.090A pdb=" N LEU C 121 " --> pdb=" O PHE C 130 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N PHE C 130 " --> pdb=" O LEU C 121 " (cutoff:3.500A) removed outlier: 3.683A pdb=" N THR C 128 " --> pdb=" O ASP C 123 " (cutoff:3.500A) Processing sheet with id= 10, first strand: chain 'D' and resid 23 through 31 Processing sheet with id= 11, first strand: chain 'E' and resid 51 through 57 removed outlier: 4.251A pdb=" N SER E 111 " --> pdb=" O TYR E 107 " (cutoff:3.500A) Processing sheet with id= 12, first strand: chain 'F' and resid 50 through 55 removed outlier: 3.553A pdb=" N LEU F 143 " --> pdb=" O LEU F 15 " (cutoff:3.500A) removed outlier: 6.852A pdb=" N ASP F 17 " --> pdb=" O LEU F 143 " (cutoff:3.500A) Processing sheet with id= 13, first strand: chain 'F' and resid 72 through 76 removed outlier: 3.632A pdb=" N THR F 76 " --> pdb=" O GLY F 81 " (cutoff:3.500A) removed outlier: 5.464A pdb=" N GLY F 81 " --> pdb=" O THR F 76 " (cutoff:3.500A) Processing sheet with id= 14, first strand: chain 'H' and resid 80 through 84 removed outlier: 3.506A pdb=" N THR H 126 " --> pdb=" O ALA H 81 " (cutoff:3.500A) Processing sheet with id= 15, first strand: chain 'H' and resid 119 through 122 removed outlier: 3.938A pdb=" N VAL H 120 " --> pdb=" O THR H 53 " (cutoff:3.500A) removed outlier: 6.225A pdb=" N LEU H 51 " --> pdb=" O LEU H 122 " (cutoff:3.500A) Processing sheet with id= 16, first strand: chain 'I' and resid 82 through 86 removed outlier: 3.512A pdb=" N VAL I 163 " --> pdb=" O VAL I 83 " (cutoff:3.500A) removed outlier: 4.783A pdb=" N MET I 160 " --> pdb=" O LEU I 149 " (cutoff:3.500A) removed outlier: 8.244A pdb=" N TYR I 143 " --> pdb=" O LYS I 166 " (cutoff:3.500A) Processing sheet with id= 17, first strand: chain 'J' and resid 56 through 61 Processing sheet with id= 18, first strand: chain 'J' and resid 88 through 92 removed outlier: 6.231A pdb=" N ILE J 104 " --> pdb=" O LEU J 89 " (cutoff:3.500A) Processing sheet with id= 19, first strand: chain 'L' and resid 2 through 5 removed outlier: 3.523A pdb=" N ARG L 3 " --> pdb=" O PRO L 125 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N GLU L 120 " --> pdb=" O THR L 80 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLU L 124 " --> pdb=" O HIS L 76 " (cutoff:3.500A) removed outlier: 5.828A pdb=" N HIS L 76 " --> pdb=" O GLU L 124 " (cutoff:3.500A) removed outlier: 4.713A pdb=" N VAL L 79 " --> pdb=" O LEU L 55 " (cutoff:3.500A) removed outlier: 4.275A pdb=" N SER L 51 " --> pdb=" O VAL L 83 " (cutoff:3.500A) Processing sheet with id= 20, first strand: chain 'L' and resid 23 through 26 Processing sheet with id= 21, first strand: chain 'L' and resid 38 through 43 removed outlier: 4.638A pdb=" N ASP L 38 " --> pdb=" O ILE L 118 " (cutoff:3.500A) removed outlier: 3.766A pdb=" N GLU L 85 " --> pdb=" O ILE L 115 " (cutoff:3.500A) Processing sheet with id= 22, first strand: chain 'L' and resid 81 through 84 removed outlier: 6.563A pdb=" N ILE L 115 " --> pdb=" O GLU L 84 " (cutoff:3.500A) Processing sheet with id= 23, first strand: chain 'L' and resid 91 through 97 removed outlier: 3.994A pdb=" N VAL L 92 " --> pdb=" O ALA L 109 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N ALA L 109 " --> pdb=" O VAL L 92 " (cutoff:3.500A) Processing sheet with id= 24, first strand: chain 'M' and resid 81 through 86 removed outlier: 7.307A pdb=" N ASN M 81 " --> pdb=" O ARG M 96 " (cutoff:3.500A) Processing sheet with id= 25, first strand: chain 'M' and resid 130 through 137 removed outlier: 6.566A pdb=" N THR M 234 " --> pdb=" O ALA M 200 " (cutoff:3.500A) removed outlier: 5.372A pdb=" N HIS M 196 " --> pdb=" O ASP M 238 " (cutoff:3.500A) Processing sheet with id= 26, first strand: chain 'M' and resid 205 through 216 No H-bonds generated for sheet with id= 26 Processing sheet with id= 27, first strand: chain 'N' and resid 160 through 164 removed outlier: 5.292A pdb=" N ASN N 161 " --> pdb=" O ILE N 231 " (cutoff:3.500A) removed outlier: 5.766A pdb=" N ILE N 231 " --> pdb=" O ASN N 161 " (cutoff:3.500A) Processing sheet with id= 28, first strand: chain 'N' and resid 165 through 171 removed outlier: 3.533A pdb=" N ALA N 221 " --> pdb=" O PHE N 168 " (cutoff:3.500A) removed outlier: 4.133A pdb=" N VAL N 220 " --> pdb=" O ARG N 198 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N ARG N 194 " --> pdb=" O GLU N 224 " (cutoff:3.500A) Processing sheet with id= 29, first strand: chain 'O' and resid 175 through 179 removed outlier: 3.976A pdb=" N VAL O 189 " --> pdb=" O VAL O 176 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N GLN O 187 " --> pdb=" O ILE O 178 " (cutoff:3.500A) Processing sheet with id= 30, first strand: chain 'O' and resid 212 through 217 removed outlier: 7.325A pdb=" N HIS O 212 " --> pdb=" O LEU O 233 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N SER O 232 " --> pdb=" O ALA O 237 " (cutoff:3.500A) removed outlier: 4.557A pdb=" N ALA O 237 " --> pdb=" O SER O 232 " (cutoff:3.500A) Processing sheet with id= 31, first strand: chain 'P' and resid 46 through 49 removed outlier: 3.659A pdb=" N LYS P 47 " --> pdb=" O LEU P 79 " (cutoff:3.500A) removed outlier: 3.893A pdb=" N GLN P 49 " --> pdb=" O PHE P 77 " (cutoff:3.500A) removed outlier: 5.367A pdb=" N PHE P 77 " --> pdb=" O GLN P 49 " (cutoff:3.500A) removed outlier: 4.083A pdb=" N THR P 78 " --> pdb=" O ASP P 73 " (cutoff:3.500A) removed outlier: 8.258A pdb=" N ASN P 69 " --> pdb=" O THR P 82 " (cutoff:3.500A) Processing sheet with id= 32, first strand: chain 'P' and resid 85 through 92 removed outlier: 5.902A pdb=" N TYR P 98 " --> pdb=" O SER P 92 " (cutoff:3.500A) Processing sheet with id= 33, first strand: chain 'Q' and resid 82 through 89 removed outlier: 4.753A pdb=" N HIS Q 94 " --> pdb=" O SER Q 89 " (cutoff:3.500A) Processing sheet with id= 34, first strand: chain 'Q' and resid 106 through 110 Processing sheet with id= 35, first strand: chain 'R' and resid 171 through 177 removed outlier: 3.589A pdb=" N SER R 139 " --> pdb=" O TYR R 336 " (cutoff:3.500A) removed outlier: 7.261A pdb=" N THR R 140 " --> pdb=" O GLU R 364 " (cutoff:3.500A) removed outlier: 3.651A pdb=" N GLU R 362 " --> pdb=" O LYS R 142 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N SER R 360 " --> pdb=" O VAL R 144 " (cutoff:3.500A) Processing sheet with id= 36, first strand: chain 'S' and resid 287 through 293 removed outlier: 4.776A pdb=" N GLN S 287 " --> pdb=" O CYS S 262 " (cutoff:3.500A) removed outlier: 6.107A pdb=" N ASN S 256 " --> pdb=" O ASP S 293 " (cutoff:3.500A) removed outlier: 7.692A pdb=" N VAL S 307 " --> pdb=" O ILE S 263 " (cutoff:3.500A) Processing sheet with id= 37, first strand: chain 'U' and resid 49 through 55 removed outlier: 5.976A pdb=" N HIS U 49 " --> pdb=" O SER U 43 " (cutoff:3.500A) removed outlier: 6.175A pdb=" N ASN U 37 " --> pdb=" O LYS U 55 " (cutoff:3.500A) removed outlier: 7.165A pdb=" N LEU U 82 " --> pdb=" O GLU U 44 " (cutoff:3.500A) removed outlier: 3.612A pdb=" N ARG U 79 " --> pdb=" O ASP U 74 " (cutoff:3.500A) removed outlier: 5.968A pdb=" N LEU U 68 " --> pdb=" O GLU U 85 " (cutoff:3.500A) Processing sheet with id= 38, first strand: chain 'V' and resid 44 through 48 Processing sheet with id= 39, first strand: chain 'W' and resid 76 through 80 removed outlier: 6.169A pdb=" N LEU W 85 " --> pdb=" O GLU W 100 " (cutoff:3.500A) Processing sheet with id= 40, first strand: chain 'X' and resid 165 through 171 removed outlier: 3.552A pdb=" N PHE X 227 " --> pdb=" O ASN X 166 " (cutoff:3.500A) Processing sheet with id= 41, first strand: chain 'X' and resid 285 through 288 removed outlier: 6.691A pdb=" N MET X 263 " --> pdb=" O ASN X 288 " (cutoff:3.500A) Processing sheet with id= 42, first strand: chain 'X' and resid 410 through 417 removed outlier: 3.551A pdb=" N ALA X 410 " --> pdb=" O LEU X 341 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N SER X 412 " --> pdb=" O CYS X 339 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N PHE X 414 " --> pdb=" O HIS X 337 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N THR X 416 " --> pdb=" O THR X 335 " (cutoff:3.500A) Processing sheet with id= 43, first strand: chain 'X' and resid 257 through 260 removed outlier: 8.506A pdb=" N ASN X 257 " --> pdb=" O ALA X 296 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N ALA X 296 " --> pdb=" O ASN X 257 " (cutoff:3.500A) Processing sheet with id= 44, first strand: chain 'X' and resid 258 through 265 removed outlier: 4.512A pdb=" N TYR X 258 " --> pdb=" O GLN X 344 " (cutoff:3.500A) Processing sheet with id= 45, first strand: chain 'BA' and resid 87 through 90 removed outlier: 3.550A pdb=" N VALBA 88 " --> pdb=" O VALBA 68 " (cutoff:3.500A) removed outlier: 4.664A pdb=" N ARGBA 72 " --> pdb=" O LEUBA 90 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N PHEBA 114 " --> pdb=" O LEUBA 67 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ILEBA 69 " --> pdb=" O PHEBA 114 " (cutoff:3.500A) removed outlier: 4.047A pdb=" N SERBA 118 " --> pdb=" O VALBA 71 " (cutoff:3.500A) Processing sheet with id= 46, first strand: chain 'BB' and resid 65 through 69 removed outlier: 5.868A pdb=" N ARGBB 65 " --> pdb=" O GLNBB 77 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N GLUBB 73 " --> pdb=" O SERBB 69 " (cutoff:3.500A) Processing sheet with id= 47, first strand: chain 'Aw' and resid 163 through 168 removed outlier: 6.329A pdb=" N ARGAw 163 " --> pdb=" O ARGAw 177 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N ILEAw 173 " --> pdb=" O GLUAw 167 " (cutoff:3.500A) Processing sheet with id= 48, first strand: chain 'Bj' and resid 89 through 95 removed outlier: 4.066A pdb=" N SERBj 89 " --> pdb=" O GLNBj 85 " (cutoff:3.500A) removed outlier: 3.699A pdb=" N THRBj 83 " --> pdb=" O ASNBj 91 " (cutoff:3.500A) Processing sheet with id= 49, first strand: chain 'Al' and resid 125 through 131 removed outlier: 4.770A pdb=" N SERAl 126 " --> pdb=" O HISAl 184 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N VALAl 181 " --> pdb=" O ILEAl 193 " (cutoff:3.500A) removed outlier: 4.176A pdb=" N THRAl 189 " --> pdb=" O CYSAl 185 " (cutoff:3.500A) Processing sheet with id= 50, first strand: chain 'BI' and resid 148 through 151 removed outlier: 3.661A pdb=" N THRBI 149 " --> pdb=" O VALBI 260 " (cutoff:3.500A) removed outlier: 4.935A pdb=" N VALBI 258 " --> pdb=" O VALBI 151 " (cutoff:3.500A) removed outlier: 7.179A pdb=" N ASPBI 85 " --> pdb=" O VALBI 261 " (cutoff:3.500A) removed outlier: 7.022A pdb=" N THRBI 97 " --> pdb=" O VALBI 234 " (cutoff:3.500A) Processing sheet with id= 51, first strand: chain 'BI' and resid 197 through 201 removed outlier: 3.969A pdb=" N LEUBI 197 " --> pdb=" O LEUBI 215 " (cutoff:3.500A) removed outlier: 5.200A pdb=" N GLNBI 211 " --> pdb=" O ALABI 201 " (cutoff:3.500A) Processing sheet with id= 52, first strand: chain 'Az' and resid 76 through 80 removed outlier: 3.686A pdb=" N ASPAz 80 " --> pdb=" O TYRAz 84 " (cutoff:3.500A) removed outlier: 4.723A pdb=" N TYRAz 84 " --> pdb=" O ASPAz 80 " (cutoff:3.500A) Processing sheet with id= 53, first strand: chain 'Ab' and resid 43 through 50 removed outlier: 3.631A pdb=" N ILEAb 12 " --> pdb=" O LYSAb 44 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N ASPAb 46 " --> pdb=" O ILEAb 12 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N ARGAb 11 " --> pdb=" O ILEAb 60 " (cutoff:3.500A) removed outlier: 4.935A pdb=" N SERAb 15 " --> pdb=" O SERAb 56 " (cutoff:3.500A) removed outlier: 5.400A pdb=" N SERAb 56 " --> pdb=" O SERAb 15 " (cutoff:3.500A) removed outlier: 7.224A pdb=" N SERAb 55 " --> pdb=" O ILEAb 71 " (cutoff:3.500A) removed outlier: 3.874A pdb=" N ILEAb 71 " --> pdb=" O SERAb 55 " (cutoff:3.500A) removed outlier: 3.727A pdb=" N SERAb 65 " --> pdb=" O TYRAb 61 " (cutoff:3.500A) Processing sheet with id= 54, first strand: chain 'Ai' and resid 5 through 10 removed outlier: 6.017A pdb=" N SERAi 5 " --> pdb=" O VALAi 409 " (cutoff:3.500A) removed outlier: 4.436A pdb=" N VALAi 405 " --> pdb=" O GLYAi 9 " (cutoff:3.500A) Processing sheet with id= 55, first strand: chain 'Ai' and resid 36 through 39 removed outlier: 4.587A pdb=" N PHEAi 36 " --> pdb=" O ALAAi 290 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N VALAi 267 " --> pdb=" O VALAi 293 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N THRAi 319 " --> pdb=" O ARGAi 264 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N SERAi 347 " --> pdb=" O GLUAi 318 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N LEUAi 320 " --> pdb=" O SERAi 347 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N PHEAi 351 " --> pdb=" O GLYAi 322 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N ASPAi 375 " --> pdb=" O ARGAi 346 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLYAi 381 " --> pdb=" O GLUAi 352 " (cutoff:3.500A) removed outlier: 6.640A pdb=" N VALAi 376 " --> pdb=" O LEUAi 394 " (cutoff:3.500A) Processing sheet with id= 56, first strand: chain 'Ai' and resid 128 through 133 removed outlier: 3.529A pdb=" N VALAi 130 " --> pdb=" O ARGAi 141 " (cutoff:3.500A) Processing sheet with id= 57, first strand: chain 'Ai' and resid 177 through 182 removed outlier: 3.649A pdb=" N LYSAi 178 " --> pdb=" O ARGAi 120 " (cutoff:3.500A) removed outlier: 3.532A pdb=" N THRAi 182 " --> pdb=" O ALAAi 124 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N HISAi 121 " --> pdb=" O ARGAi 72 " (cutoff:3.500A) removed outlier: 5.311A pdb=" N ARGAi 125 " --> pdb=" O ILEAi 76 " (cutoff:3.500A) removed outlier: 5.249A pdb=" N VALAi 223 " --> pdb=" O ALAAi 95 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N GLUAi 227 " --> pdb=" O ILEAi 99 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N HISAi 238 " --> pdb=" O TYRAi 441 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N GLYAi 439 " --> pdb=" O THRAi 240 " (cutoff:3.500A) removed outlier: 6.345A pdb=" N ALAAi 438 " --> pdb=" O GLUAi 449 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ASNAi 442 " --> pdb=" O GLYAi 445 " (cutoff:3.500A) Processing sheet with id= 58, first strand: chain 'Ai' and resid 462 through 466 removed outlier: 4.210A pdb=" N GLUAi 462 " --> pdb=" O METAi 474 " (cutoff:3.500A) removed outlier: 4.421A pdb=" N ASNAi 470 " --> pdb=" O ASPAi 466 " (cutoff:3.500A) Processing sheet with id= 59, first strand: chain 'Ap' and resid 24 through 27 removed outlier: 4.109A pdb=" N ARGAp 25 " --> pdb=" O METAp 196 " (cutoff:3.500A) removed outlier: 6.640A pdb=" N TYRAp 200 " --> pdb=" O LYSAp 27 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N ARGAp 195 " --> pdb=" O SERAp 219 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N GLUAp 217 " --> pdb=" O GLUAp 197 " (cutoff:3.500A) Processing sheet with id= 60, first strand: chain 'Ap' and resid 108 through 113 removed outlier: 6.514A pdb=" N PHEAp 108 " --> pdb=" O THRAp 125 " (cutoff:3.500A) Processing sheet with id= 61, first strand: chain 'Aa' and resid 97 through 100 removed outlier: 3.526A pdb=" N LEUAa 100 " --> pdb=" O GLYAa 104 " (cutoff:3.500A) removed outlier: 5.307A pdb=" N GLYAa 104 " --> pdb=" O LEUAa 100 " (cutoff:3.500A) Processing sheet with id= 62, first strand: chain 'Ar' and resid 108 through 114 removed outlier: 3.573A pdb=" N ARGAr 113 " --> pdb=" O ARGAr 196 " (cutoff:3.500A) Processing sheet with id= 63, first strand: chain 'BH' and resid 82 through 86 removed outlier: 3.659A pdb=" N ARGBH 83 " --> pdb=" O GLNBH 91 " (cutoff:3.500A) removed outlier: 6.102A pdb=" N PHEBH 88 " --> pdb=" O LEUBH 146 " (cutoff:3.500A) removed outlier: 4.066A pdb=" N PHEBH 142 " --> pdb=" O GLYBH 92 " (cutoff:3.500A) removed outlier: 4.785A pdb=" N GLNBH 141 " --> pdb=" O ALABH 131 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N THRBH 127 " --> pdb=" O ASNBH 145 " (cutoff:3.500A) Processing sheet with id= 64, first strand: chain 'BH' and resid 160 through 163 removed outlier: 6.300A pdb=" N SERBH 44 " --> pdb=" O LEUBH 163 " (cutoff:3.500A) removed outlier: 6.136A pdb=" N ASPBH 32 " --> pdb=" O SERBH 190 " (cutoff:3.500A) Processing sheet with id= 65, first strand: chain 'BH' and resid 29 through 32 removed outlier: 3.555A pdb=" N ASPBH 191 " --> pdb=" O ASPBH 32 " (cutoff:3.500A) Processing sheet with id= 66, first strand: chain 'Am' and resid 74 through 77 removed outlier: 3.592A pdb=" N GLUAm 83 " --> pdb=" O PHEAm 75 " (cutoff:3.500A) removed outlier: 4.367A pdb=" N ASNAm 81 " --> pdb=" O ASNAm 77 " (cutoff:3.500A) Processing sheet with id= 67, first strand: chain 'Ak' and resid 57 through 61 removed outlier: 4.722A pdb=" N ASPAk 21 " --> pdb=" O VALAk 61 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N HISAk 93 " --> pdb=" O PROAk 16 " (cutoff:3.500A) removed outlier: 4.012A pdb=" N HISAk 97 " --> pdb=" O LEUAk 20 " (cutoff:3.500A) removed outlier: 4.329A pdb=" N SERAk 119 " --> pdb=" O SERAk 92 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N VALAk 94 " --> pdb=" O SERAk 119 " (cutoff:3.500A) Processing sheet with id= 68, first strand: chain 'Ad' and resid 156 through 159 removed outlier: 5.805A pdb=" N ASNAd 188 " --> pdb=" O HISAd 159 " (cutoff:3.500A) Processing sheet with id= 69, first strand: chain 'Ad' and resid 167 through 173 removed outlier: 3.584A pdb=" N GLNAd 187 " --> pdb=" O PROAd 167 " (cutoff:3.500A) removed outlier: 5.186A pdb=" N ALAAd 181 " --> pdb=" O METAd 173 " (cutoff:3.500A) removed outlier: 4.275A pdb=" N LYSAd 208 " --> pdb=" O TYRAd 219 " (cutoff:3.500A) Processing sheet with id= 70, first strand: chain 'Av' and resid 30 through 33 removed outlier: 4.543A pdb=" N LYSAv 31 " --> pdb=" O SERAv 85 " (cutoff:3.500A) removed outlier: 8.253A pdb=" N GLYAv 83 " --> pdb=" O VALAv 33 " (cutoff:3.500A) removed outlier: 7.200A pdb=" N GLUAv 82 " --> pdb=" O PROAv 101 " (cutoff:3.500A) removed outlier: 4.784A pdb=" N METAv 84 " --> pdb=" O ILEAv 99 " (cutoff:3.500A) Processing sheet with id= 71, first strand: chain 'Av' and resid 55 through 58 Processing sheet with id= 72, first strand: chain 'Ae' and resid 218 through 224 removed outlier: 3.501A pdb=" N LYSAe 180 " --> pdb=" O THRAe 235 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N TRPAe 236 " --> pdb=" O SERAe 240 " (cutoff:3.500A) removed outlier: 4.408A pdb=" N SERAe 240 " --> pdb=" O TRPAe 236 " (cutoff:3.500A) Processing sheet with id= 73, first strand: chain 'Ac' and resid 170 through 175 removed outlier: 3.840A pdb=" N ASPAc 255 " --> pdb=" O GLNAc 174 " (cutoff:3.500A) Processing sheet with id= 74, first strand: chain 'Ac' and resid 185 through 188 removed outlier: 6.167A pdb=" N ILEAc 48 " --> pdb=" O ARGAc 188 " (cutoff:3.500A) removed outlier: 6.083A pdb=" N ARGAc 47 " --> pdb=" O ASNAc 229 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N ARGAc 231 " --> pdb=" O ARGAc 47 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N ALAAc 237 " --> pdb=" O TYRAc 53 " (cutoff:3.500A) removed outlier: 3.893A pdb=" N THRAc 230 " --> pdb=" O LEUAc 225 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N ILEAc 234 " --> pdb=" O ALAAc 221 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N ALAAc 221 " --> pdb=" O ILEAc 234 " (cutoff:3.500A) Processing sheet with id= 75, first strand: chain 'BD' and resid 18 through 25 removed outlier: 4.522A pdb=" N ALABD 18 " --> pdb=" O CYSBD 13 " (cutoff:3.500A) removed outlier: 3.567A pdb=" N CYSBD 13 " --> pdb=" O ALABD 18 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N TYRBD 10 " --> pdb=" O LEUBD 76 " (cutoff:3.500A) Processing sheet with id= 76, first strand: chain 'Ay' and resid 56 through 59 removed outlier: 3.603A pdb=" N ILEAy 64 " --> pdb=" O CYSAy 59 " (cutoff:3.500A) Processing sheet with id= 77, first strand: chain 'Ax' and resid 121 through 124 Processing sheet with id= 78, first strand: chain 'BL' and resid 75 through 80 removed outlier: 6.301A pdb=" N ASPBL 86 " --> pdb=" O TYRBL 78 " (cutoff:3.500A) removed outlier: 6.574A pdb=" N GLNBL 84 " --> pdb=" O GLNBL 80 " (cutoff:3.500A) Processing sheet with id= 79, first strand: chain 'BL' and resid 161 through 164 removed outlier: 3.839A pdb=" N CYSBL 161 " --> pdb=" O PHEBL 174 " (cutoff:3.500A) Processing sheet with id= 80, first strand: chain 'BL' and resid 219 through 224 removed outlier: 8.122A pdb=" N TYRBL 219 " --> pdb=" O ARGBL 248 " (cutoff:3.500A) removed outlier: 7.168A pdb=" N ARGBL 248 " --> pdb=" O TYRBL 219 " (cutoff:3.500A) removed outlier: 5.402A pdb=" N LYSBL 221 " --> pdb=" O VALBL 246 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N VALBL 246 " --> pdb=" O LYSBL 221 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N GLUBL 263 " --> pdb=" O LEUBL 259 " (cutoff:3.500A) Processing sheet with id= 81, first strand: chain 'BL' and resid 328 through 331 removed outlier: 5.208A pdb=" N ASPBL 331 " --> pdb=" O ARGBL 333 " (cutoff:3.500A) removed outlier: 4.830A pdb=" N ARGBL 333 " --> pdb=" O ASPBL 331 " (cutoff:3.500A) Processing sheet with id= 82, first strand: chain 'BO' and resid 78 through 81 removed outlier: 5.814A pdb=" N ALABO 81 " --> pdb=" O VALBO 64 " (cutoff:3.500A) removed outlier: 4.485A pdb=" N VALBO 64 " --> pdb=" O ALABO 81 " (cutoff:3.500A) removed outlier: 6.886A pdb=" N ASNBO 150 " --> pdb=" O LYSBO 65 " (cutoff:3.500A) removed outlier: 3.691A pdb=" N CYSBO 152 " --> pdb=" O HISBO 67 " (cutoff:3.500A) Processing sheet with id= 83, first strand: chain 'BO' and resid 98 through 101 removed outlier: 5.105A pdb=" N ASNBO 124 " --> pdb=" O VALBO 101 " (cutoff:3.500A) Processing sheet with id= 84, first strand: chain 'BO' and resid 136 through 139 removed outlier: 3.565A pdb=" N THRBO 145 " --> pdb=" O ASNBO 137 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N LEUBO 143 " --> pdb=" O ARGBO 139 " (cutoff:3.500A) Processing sheet with id= 85, first strand: chain 'BG' and resid 1282 through 1286 3162 hydrogen bonds defined for protein. 9387 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 135 hydrogen bonds 218 hydrogen bond angles 0 basepair planarities 67 basepair parallelities 320 stacking parallelities Total time for adding SS restraints: 59.90 Time building geometry restraints manager: 55.71 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.18 - 1.31: 21366 1.31 - 1.44: 48104 1.44 - 1.57: 76994 1.57 - 1.70: 2176 1.70 - 1.83: 967 Bond restraints: 149607 Sorted by residual: bond pdb=" N TYRAa 193 " pdb=" CA TYRAa 193 " ideal model delta sigma weight residual 1.457 1.659 -0.202 1.29e-02 6.01e+03 2.44e+02 bond pdb=" C1' C 1 482 " pdb=" N1 C 1 482 " ideal model delta sigma weight residual 1.480 1.562 -0.082 1.50e-02 4.44e+03 2.98e+01 bond pdb=" CA GLNAe 253 " pdb=" C GLNAe 253 " ideal model delta sigma weight residual 1.522 1.455 0.067 1.41e-02 5.03e+03 2.24e+01 bond pdb=" N VAL U 23 " pdb=" CA VAL U 23 " ideal model delta sigma weight residual 1.456 1.499 -0.042 9.50e-03 1.11e+04 1.97e+01 bond pdb=" C GLNAa 20 " pdb=" N HISAa 21 " ideal model delta sigma weight residual 1.331 1.270 0.060 1.36e-02 5.41e+03 1.97e+01 ... (remaining 149602 not shown) Histogram of bond angle deviations from ideal: 81.82 - 93.06: 4 93.06 - 104.30: 7000 104.30 - 115.54: 95944 115.54 - 126.78: 99826 126.78 - 138.01: 5191 Bond angle restraints: 207965 Sorted by residual: angle pdb=" N PHEAf 60 " pdb=" CA PHEAf 60 " pdb=" C PHEAf 60 " ideal model delta sigma weight residual 110.14 81.82 28.32 1.55e+00 4.16e-01 3.34e+02 angle pdb=" N LEUAa 91 " pdb=" CA LEUAa 91 " pdb=" C LEUAa 91 " ideal model delta sigma weight residual 109.54 88.17 21.37 1.37e+00 5.33e-01 2.43e+02 angle pdb=" N PRO G 214 " pdb=" CA PRO G 214 " pdb=" C PRO G 214 " ideal model delta sigma weight residual 110.80 91.32 19.48 1.51e+00 4.39e-01 1.66e+02 angle pdb=" N ALAAf 59 " pdb=" CA ALAAf 59 " pdb=" C ALAAf 59 " ideal model delta sigma weight residual 108.02 86.89 21.13 1.78e+00 3.16e-01 1.41e+02 angle pdb=" N PRO F 158 " pdb=" CA PRO F 158 " pdb=" C PRO F 158 " ideal model delta sigma weight residual 111.38 93.84 17.54 1.59e+00 3.96e-01 1.22e+02 ... (remaining 207960 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 35.81: 85913 35.81 - 71.61: 4240 71.61 - 107.42: 407 107.42 - 143.23: 77 143.23 - 179.03: 67 Dihedral angle restraints: 90704 sinusoidal: 46754 harmonic: 43950 Sorted by residual: dihedral pdb=" CA PHEAf 60 " pdb=" C PHEAf 60 " pdb=" N VALAf 61 " pdb=" CA VALAf 61 " ideal model delta harmonic sigma weight residual -180.00 -115.97 -64.03 0 5.00e+00 4.00e-02 1.64e+02 dihedral pdb=" CA THRBB 129 " pdb=" C THRBB 129 " pdb=" N LYSBB 130 " pdb=" CA LYSBB 130 " ideal model delta harmonic sigma weight residual 180.00 118.30 61.70 0 5.00e+00 4.00e-02 1.52e+02 dihedral pdb=" CA ARGAq 174 " pdb=" C ARGAq 174 " pdb=" N VALAq 175 " pdb=" CA VALAq 175 " ideal model delta harmonic sigma weight residual -180.00 -120.56 -59.44 0 5.00e+00 4.00e-02 1.41e+02 ... (remaining 90701 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.237: 22822 0.237 - 0.474: 178 0.474 - 0.711: 9 0.711 - 0.948: 2 0.948 - 1.185: 3 Chirality restraints: 23014 Sorted by residual: chirality pdb=" CA LYSAx 149 " pdb=" N LYSAx 149 " pdb=" C LYSAx 149 " pdb=" CB LYSAx 149 " both_signs ideal model delta sigma weight residual False 2.51 1.33 1.19 2.00e-01 2.50e+01 3.51e+01 chirality pdb=" CA HISBP -3 " pdb=" N HISBP -3 " pdb=" C HISBP -3 " pdb=" CB HISBP -3 " both_signs ideal model delta sigma weight residual False 2.51 1.55 0.96 2.00e-01 2.50e+01 2.32e+01 chirality pdb=" CA MET A 290 " pdb=" N MET A 290 " pdb=" C MET A 290 " pdb=" CB MET A 290 " both_signs ideal model delta sigma weight residual False 2.51 1.55 0.96 2.00e-01 2.50e+01 2.31e+01 ... (remaining 23011 not shown) Planarity restraints: 23123 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" C1' U 1 146 " 0.058 2.00e-02 2.50e+03 4.53e-02 4.62e+01 pdb=" N1 U 1 146 " -0.097 2.00e-02 2.50e+03 pdb=" C2 U 1 146 " -0.001 2.00e-02 2.50e+03 pdb=" O2 U 1 146 " -0.001 2.00e-02 2.50e+03 pdb=" N3 U 1 146 " 0.004 2.00e-02 2.50e+03 pdb=" C4 U 1 146 " 0.069 2.00e-02 2.50e+03 pdb=" O4 U 1 146 " -0.031 2.00e-02 2.50e+03 pdb=" C5 U 1 146 " 0.006 2.00e-02 2.50e+03 pdb=" C6 U 1 146 " -0.008 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" C1D NADAg 301 " -0.011 2.00e-02 2.50e+03 3.59e-02 2.57e+01 pdb=" C2N NADAg 301 " 0.052 2.00e-02 2.50e+03 pdb=" C3N NADAg 301 " 0.025 2.00e-02 2.50e+03 pdb=" C4N NADAg 301 " 0.040 2.00e-02 2.50e+03 pdb=" C5N NADAg 301 " -0.009 2.00e-02 2.50e+03 pdb=" C6N NADAg 301 " -0.040 2.00e-02 2.50e+03 pdb=" C7N NADAg 301 " -0.060 2.00e-02 2.50e+03 pdb=" N1N NADAg 301 " 0.003 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" CA ASP B 406 " -0.024 2.00e-02 2.50e+03 4.77e-02 2.27e+01 pdb=" C ASP B 406 " 0.083 2.00e-02 2.50e+03 pdb=" O ASP B 406 " -0.030 2.00e-02 2.50e+03 pdb=" N GLU B 407 " -0.028 2.00e-02 2.50e+03 ... (remaining 23120 not shown) Histogram of nonbonded interaction distances: 1.61 - 2.27: 382 2.27 - 2.93: 69608 2.93 - 3.59: 215782 3.59 - 4.24: 366258 4.24 - 4.90: 586424 Nonbonded interactions: 1238454 Sorted by model distance: nonbonded pdb=" OE1 GLN K 46 " pdb=" O THRAa 191 " model vdw 1.615 3.040 nonbonded pdb=" O ARGAx 129 " pdb=" O THRAx 132 " model vdw 1.906 3.040 nonbonded pdb=" O2' A 1 923 " pdb=" OP2 A 1 980 " model vdw 1.945 2.440 nonbonded pdb=" O2' U 1 221 " pdb=" O2' U 1 882 " model vdw 1.970 2.440 nonbonded pdb=" OH TYR N 76 " pdb=" OP2 A 1 316 " model vdw 1.979 2.440 ... (remaining 1238449 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model ========== WARNING! ============ No NCS relation were found !!! ================================ Found NCS groups: found none. Set up NCS constraints No NCS constraints will be used in refinement. Set refine NCS operators Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=1.00 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as group one per residue Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 5.760 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.000 Assert all atoms have isotropic ADPs: 0.010 Construct map_model_manager: 0.200 Extract box with map and model: 19.820 Check model and map are aligned: 1.660 Set scattering table: 1.050 Process input model: 396.070 Find NCS groups from input model: 5.920 Set up NCS constraints: 0.420 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.000 Extract rigid body selections: 0.000 Check and reset occupancies: 0.020 Load rotamer database and sin/cos tables:2.250 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 433.180 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7888 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.009 0.202 149607 Z= 0.582 Angle : 1.065 28.321 207965 Z= 0.629 Chirality : 0.063 1.185 23014 Planarity : 0.006 0.099 23123 Dihedral : 20.177 179.032 62310 Min Nonbonded Distance : 1.615 Molprobity Statistics. All-atom Clashscore : 24.41 Ramachandran Plot: Outliers : 0.59 % Allowed : 13.97 % Favored : 85.44 % Rotamer: Outliers : 1.35 % Allowed : 11.63 % Favored : 87.02 % Cbeta Deviations : 0.39 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.31 % Twisted General : 0.22 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -5.04 (0.06), residues: 14352 helix: -4.11 (0.05), residues: 4390 sheet: -3.36 (0.13), residues: 1056 loop : -3.07 (0.06), residues: 8906 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.065 0.003 TRPAh 166 HIS 0.016 0.002 HIS X 64 PHE 0.036 0.002 PHEAq 120 TYR 0.048 0.002 TYRBA 28 ARG 0.017 0.001 ARGBO 105 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 28704 Ramachandran restraints generated. 14352 Oldfield, 0 Emsley, 14352 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 28704 Ramachandran restraints generated. 14352 Oldfield, 0 Emsley, 14352 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 3241 residues out of total 12539 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 169 poor density : 3072 time to evaluate : 11.391 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash REVERT: A 169 ARG cc_start: 0.6991 (ttt-90) cc_final: 0.6610 (ttm170) REVERT: A 266 ASP cc_start: 0.7255 (m-30) cc_final: 0.6993 (m-30) REVERT: A 282 LYS cc_start: 0.8696 (mtmt) cc_final: 0.8144 (mttp) REVERT: B 191 MET cc_start: 0.8379 (tpp) cc_final: 0.8132 (tpt) REVERT: C 24 MET cc_start: 0.8475 (mmt) cc_final: 0.8246 (mmt) REVERT: C 100 LEU cc_start: 0.8531 (OUTLIER) cc_final: 0.8318 (mp) REVERT: C 188 LEU cc_start: 0.9283 (tp) cc_final: 0.9037 (tp) REVERT: D 87 TYR cc_start: 0.6150 (OUTLIER) cc_final: 0.5417 (m-10) REVERT: D 123 ARG cc_start: 0.4099 (mtt90) cc_final: 0.3523 (ttt180) REVERT: E 240 GLU cc_start: 0.7881 (OUTLIER) cc_final: 0.7605 (tp30) REVERT: E 322 GLN cc_start: 0.8037 (OUTLIER) cc_final: 0.7749 (tm130) REVERT: F 9 GLU cc_start: 0.7542 (mp0) cc_final: 0.7327 (tm-30) REVERT: F 124 LYS cc_start: 0.9022 (mttt) cc_final: 0.8773 (mttp) REVERT: F 156 LYS cc_start: 0.8108 (mttp) cc_final: 0.7868 (mmtt) REVERT: G 73 ARG cc_start: 0.6875 (tpm170) cc_final: 0.6652 (mmm160) REVERT: G 143 GLN cc_start: 0.8429 (OUTLIER) cc_final: 0.8216 (tt0) REVERT: G 150 ARG cc_start: 0.8571 (OUTLIER) cc_final: 0.8313 (tpt-90) REVERT: G 166 TYR cc_start: 0.8959 (p90) cc_final: 0.8743 (p90) REVERT: I 114 GLN cc_start: 0.8455 (tm-30) cc_final: 0.8220 (tm-30) REVERT: J 101 MET cc_start: 0.8053 (tpp) cc_final: 0.7721 (tpp) REVERT: J 122 PHE cc_start: 0.8200 (t80) cc_final: 0.7250 (m-10) REVERT: J 131 LYS cc_start: 0.9257 (mmtt) cc_final: 0.8911 (mmtp) REVERT: K 16 GLU cc_start: 0.7801 (mp0) cc_final: 0.7422 (mp0) REVERT: K 64 LYS cc_start: 0.9128 (tptt) cc_final: 0.8900 (tptm) REVERT: L 52 GLN cc_start: 0.7941 (mm-40) cc_final: 0.7732 (mm-40) REVERT: L 89 MET cc_start: 0.7900 (mtp) cc_final: 0.7665 (mtp) REVERT: M 114 TYR cc_start: 0.8575 (t80) cc_final: 0.8304 (t80) REVERT: M 136 MET cc_start: 0.7948 (ttm) cc_final: 0.7629 (ttm) REVERT: M 145 LYS cc_start: 0.8093 (mttt) cc_final: 0.7782 (mtpp) REVERT: N 148 ASP cc_start: 0.8106 (t0) cc_final: 0.7680 (t0) REVERT: O 26 MET cc_start: 0.2630 (mtt) cc_final: 0.2179 (ppp) REVERT: O 38 LYS cc_start: 0.8854 (ttpp) cc_final: 0.8544 (ptmm) REVERT: P 28 LYS cc_start: 0.8893 (mmtt) cc_final: 0.8660 (mmtt) REVERT: P 64 TYR cc_start: 0.8960 (m-80) cc_final: 0.8671 (m-80) REVERT: P 157 LYS cc_start: 0.8868 (mtmm) cc_final: 0.8538 (mtmt) REVERT: Q 32 ASN cc_start: 0.8322 (m-40) cc_final: 0.7956 (m110) REVERT: Q 129 GLU cc_start: 0.6791 (mt-10) cc_final: 0.6532 (mt-10) REVERT: Q 156 ILE cc_start: 0.9323 (tp) cc_final: 0.8895 (tp) REVERT: R 164 PHE cc_start: 0.8142 (t80) cc_final: 0.7847 (t80) REVERT: R 445 ILE cc_start: 0.6914 (tt) cc_final: 0.6549 (tt) REVERT: R 480 ILE cc_start: 0.8686 (pt) cc_final: 0.8325 (pt) REVERT: S 316 ASP cc_start: 0.7059 (p0) cc_final: 0.6764 (p0) REVERT: S 389 GLN cc_start: 0.7374 (mt0) cc_final: 0.7148 (tm-30) REVERT: U 59 GLU cc_start: 0.8464 (mp0) cc_final: 0.8104 (mp0) REVERT: X 86 GLU cc_start: 0.8186 (pp20) cc_final: 0.7447 (pp20) REVERT: X 283 ARG cc_start: 0.8475 (OUTLIER) cc_final: 0.7943 (mtm-85) REVERT: X 354 MET cc_start: 0.6979 (mtp) cc_final: 0.6621 (mtm) REVERT: X 420 ILE cc_start: 0.9415 (tp) cc_final: 0.9203 (tp) REVERT: X 447 GLU cc_start: 0.7551 (mt-10) cc_final: 0.7310 (mt-10) REVERT: Y 74 TYR cc_start: 0.8452 (t80) cc_final: 0.7834 (t80) REVERT: Z 27 ASP cc_start: 0.8319 (t0) cc_final: 0.8101 (t0) REVERT: Z 38 ASP cc_start: 0.7767 (t0) cc_final: 0.7442 (t0) REVERT: Z 55 HIS cc_start: 0.7151 (m-70) cc_final: 0.6804 (m-70) REVERT: Z 156 TYR cc_start: 0.7968 (p90) cc_final: 0.7457 (p90) REVERT: BA 34 ARG cc_start: 0.7456 (tpt170) cc_final: 0.6950 (tpt170) REVERT: Aw 19 ASN cc_start: 0.6953 (p0) cc_final: 0.6417 (p0) REVERT: Aw 130 ASP cc_start: 0.8067 (p0) cc_final: 0.7639 (p0) REVERT: Bj 96 GLU cc_start: 0.7829 (pt0) cc_final: 0.7545 (pt0) REVERT: Bj 128 ARG cc_start: 0.7489 (ttp-170) cc_final: 0.7141 (ttp-170) REVERT: An 117 MET cc_start: 0.7993 (OUTLIER) cc_final: 0.7631 (mtp) REVERT: An 176 GLU cc_start: 0.6931 (pp20) cc_final: 0.6166 (pp20) REVERT: An 315 MET cc_start: 0.7993 (mmt) cc_final: 0.7769 (mmm) REVERT: Al 268 TYR cc_start: 0.8482 (OUTLIER) cc_final: 0.7502 (m-80) REVERT: At 70 MET cc_start: 0.7886 (mmm) cc_final: 0.7674 (mmp) REVERT: At 117 GLU cc_start: 0.7424 (tp30) cc_final: 0.7007 (tp30) REVERT: BC 3 ASP cc_start: 0.8137 (m-30) cc_final: 0.7778 (m-30) REVERT: BC 52 ARG cc_start: 0.8442 (tpp-160) cc_final: 0.8152 (mmt180) REVERT: BC 56 LEU cc_start: 0.9152 (mm) cc_final: 0.8868 (mm) REVERT: BC 113 LYS cc_start: 0.8600 (tttt) cc_final: 0.8397 (ttpp) REVERT: Ab 3 ARG cc_start: 0.6933 (mtt-85) cc_final: 0.6610 (mmt180) REVERT: Ab 238 MET cc_start: 0.8546 (tpp) cc_final: 0.8179 (tpp) REVERT: Ab 247 GLU cc_start: 0.8702 (mm-30) cc_final: 0.8482 (mm-30) REVERT: Ai 186 MET cc_start: 0.6453 (mpp) cc_final: 0.6197 (mpp) REVERT: Ap 209 LYS cc_start: 0.7408 (mmtt) cc_final: 0.7056 (mmtm) REVERT: Aa 78 PHE cc_start: 0.7804 (p90) cc_final: 0.7597 (p90) REVERT: Ao 48 MET cc_start: 0.7108 (ttt) cc_final: 0.6867 (ttm) REVERT: Ao 150 ASP cc_start: 0.8149 (t0) cc_final: 0.7901 (t70) REVERT: Ao 186 MET cc_start: 0.8409 (tpp) cc_final: 0.8176 (tpt) REVERT: Ao 253 TYR cc_start: 0.8091 (t80) cc_final: 0.7753 (t80) REVERT: BM 259 LYS cc_start: 0.6461 (mppt) cc_final: 0.5868 (mtmt) REVERT: BM 272 LYS cc_start: 0.5811 (mmtt) cc_final: 0.4809 (mmtt) REVERT: BM 350 PHE cc_start: 0.6634 (t80) cc_final: 0.6265 (m-10) REVERT: BM 371 TRP cc_start: 0.3501 (m100) cc_final: 0.2962 (m-90) REVERT: Ar 22 ILE cc_start: 0.9123 (mm) cc_final: 0.8666 (tt) REVERT: Ar 133 GLN cc_start: 0.8415 (tm-30) cc_final: 0.8203 (tm-30) REVERT: Aj 212 ASP cc_start: 0.7937 (m-30) cc_final: 0.7641 (m-30) REVERT: BH 54 ARG cc_start: 0.8327 (mpt-90) cc_final: 0.7922 (mpt90) REVERT: BH 122 LYS cc_start: 0.8019 (mttt) cc_final: 0.7178 (pttt) REVERT: Am 218 MET cc_start: 0.6571 (tmm) cc_final: 0.6349 (pmm) REVERT: Aq 1 MET cc_start: 0.5451 (ttt) cc_final: 0.4867 (mpp) REVERT: Aq 10 TYR cc_start: 0.8531 (m-80) cc_final: 0.8249 (m-10) REVERT: Aq 60 ARG cc_start: 0.7865 (mmm160) cc_final: 0.7248 (ptp-170) REVERT: Ak 15 ARG cc_start: 0.7499 (mtm-85) cc_final: 0.6428 (mtm110) REVERT: Ak 73 MET cc_start: 0.9015 (mmt) cc_final: 0.8768 (mmm) REVERT: Ak 130 GLU cc_start: 0.7999 (mm-30) cc_final: 0.7782 (tm-30) REVERT: Ak 173 TYR cc_start: 0.6743 (t80) cc_final: 0.6422 (t80) REVERT: Ak 177 VAL cc_start: 0.8439 (m) cc_final: 0.8021 (p) REVERT: BP 149 ASP cc_start: 0.7758 (p0) cc_final: 0.7379 (p0) REVERT: BP 169 ASP cc_start: 0.8348 (t70) cc_final: 0.8123 (t70) REVERT: BP 172 MET cc_start: 0.6164 (ptp) cc_final: 0.5939 (tmm) REVERT: Ad 27 HIS cc_start: 0.5111 (OUTLIER) cc_final: 0.4767 (m-70) REVERT: Ad 33 HIS cc_start: 0.7339 (t70) cc_final: 0.6971 (t70) REVERT: Ad 173 MET cc_start: 0.8317 (mpp) cc_final: 0.8002 (mtm) REVERT: Ad 222 ASN cc_start: 0.8397 (p0) cc_final: 0.8112 (p0) REVERT: BF 95 ASN cc_start: 0.8358 (t0) cc_final: 0.8149 (t0) REVERT: Av 128 LYS cc_start: 0.7644 (pttp) cc_final: 0.7218 (ttpp) REVERT: Af 72 GLU cc_start: 0.7203 (pm20) cc_final: 0.6778 (pm20) REVERT: Af 85 ARG cc_start: 0.7662 (tpp-160) cc_final: 0.7353 (ttm-80) REVERT: Af 129 GLU cc_start: 0.7815 (tm-30) cc_final: 0.7568 (tt0) REVERT: Ah 468 LEU cc_start: 0.8472 (mt) cc_final: 0.8062 (mt) REVERT: BD 88 MET cc_start: 0.7013 (mtp) cc_final: 0.6647 (mtm) REVERT: Ay 51 TRP cc_start: 0.8778 (OUTLIER) cc_final: 0.7603 (m-10) REVERT: Ay 152 GLN cc_start: 0.7661 (pt0) cc_final: 0.7280 (pt0) REVERT: Ag 195 TYR cc_start: 0.8870 (t80) cc_final: 0.8659 (t80) REVERT: Ax 83 ARG cc_start: 0.8684 (mmt90) cc_final: 0.8425 (mmt-90) REVERT: Ax 116 ASP cc_start: 0.6492 (m-30) cc_final: 0.6104 (t0) REVERT: Ax 136 TYR cc_start: 0.8967 (OUTLIER) cc_final: 0.8735 (m-10) REVERT: Ax 165 TRP cc_start: 0.8234 (m-10) cc_final: 0.7741 (m-10) REVERT: Ax 173 ARG cc_start: 0.7392 (OUTLIER) cc_final: 0.7164 (mpt90) REVERT: BL 132 HIS cc_start: 0.7095 (OUTLIER) cc_final: 0.6221 (t70) REVERT: BL 134 ARG cc_start: 0.8718 (OUTLIER) cc_final: 0.8301 (ttm170) REVERT: BL 182 TYR cc_start: 0.8610 (t80) cc_final: 0.8364 (t80) REVERT: BL 376 ASP cc_start: 0.7156 (t70) cc_final: 0.6804 (t70) REVERT: BO 54 TYR cc_start: 0.8807 (t80) cc_final: 0.8244 (t80) REVERT: BO 87 ARG cc_start: 0.7330 (ttp-170) cc_final: 0.5117 (ttp-170) REVERT: BO 105 ARG cc_start: 0.5301 (pmt170) cc_final: 0.4766 (ptp90) REVERT: BG 1304 MET cc_start: 0.8440 (ttp) cc_final: 0.8167 (ttp) outliers start: 169 outliers final: 78 residues processed: 3178 average time/residue: 1.3750 time to fit residues: 7298.7486 Evaluate side-chains 2449 residues out of total 12539 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 93 poor density : 2356 time to evaluate : 10.144 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Chi-restraints excluded: chain A residue 205 VAL Chi-restraints excluded: chain B residue 75 THR Chi-restraints excluded: chain B residue 192 ASP Chi-restraints excluded: chain B residue 193 VAL Chi-restraints excluded: chain C residue 100 LEU Chi-restraints excluded: chain D residue 87 TYR Chi-restraints excluded: chain E residue 173 ILE Chi-restraints excluded: chain E residue 175 VAL Chi-restraints excluded: chain E residue 177 VAL Chi-restraints excluded: chain E residue 233 LEU Chi-restraints excluded: chain E residue 240 GLU Chi-restraints excluded: chain E residue 320 ASP Chi-restraints excluded: chain E residue 322 GLN Chi-restraints excluded: chain G residue 143 GLN Chi-restraints excluded: chain G residue 145 ARG Chi-restraints excluded: chain G residue 148 THR Chi-restraints excluded: chain G residue 150 ARG Chi-restraints excluded: chain G residue 358 TRP Chi-restraints excluded: chain J residue 75 VAL Chi-restraints excluded: chain M residue 9 ASN Chi-restraints excluded: chain M residue 54 MET Chi-restraints excluded: chain O residue 19 PHE Chi-restraints excluded: chain O residue 29 ARG Chi-restraints excluded: chain O residue 100 THR Chi-restraints excluded: chain P residue 41 THR Chi-restraints excluded: chain P residue 134 VAL Chi-restraints excluded: chain Q residue 49 VAL Chi-restraints excluded: chain Q residue 108 ILE Chi-restraints excluded: chain R residue 138 THR Chi-restraints excluded: chain R residue 375 VAL Chi-restraints excluded: chain U residue 30 ILE Chi-restraints excluded: chain U residue 36 ASN Chi-restraints excluded: chain V residue 39 VAL Chi-restraints excluded: chain W residue 97 ASN Chi-restraints excluded: chain X residue 77 ASP Chi-restraints excluded: chain X residue 158 VAL Chi-restraints excluded: chain X residue 283 ARG Chi-restraints excluded: chain X residue 353 PRO Chi-restraints excluded: chain Z residue 43 ILE Chi-restraints excluded: chain BB residue 111 PHE Chi-restraints excluded: chain Aw residue 6 VAL Chi-restraints excluded: chain An residue 106 TRP Chi-restraints excluded: chain An residue 117 MET Chi-restraints excluded: chain An residue 129 LYS Chi-restraints excluded: chain An residue 143 TYR Chi-restraints excluded: chain An residue 255 VAL Chi-restraints excluded: chain An residue 304 ASP Chi-restraints excluded: chain Al residue 268 TYR Chi-restraints excluded: chain Al residue 269 GLU Chi-restraints excluded: chain Al residue 274 VAL Chi-restraints excluded: chain Al residue 284 VAL Chi-restraints excluded: chain Al residue 289 ASN Chi-restraints excluded: chain Az residue 35 LEU Chi-restraints excluded: chain Az residue 60 HIS Chi-restraints excluded: chain BC residue 68 ASP Chi-restraints excluded: chain Ab residue 63 ASP Chi-restraints excluded: chain Ai residue 168 VAL Chi-restraints excluded: chain Ap residue 210 VAL Chi-restraints excluded: chain Au residue 72 ASP Chi-restraints excluded: chain Au residue 77 VAL Chi-restraints excluded: chain Au residue 93 HIS Chi-restraints excluded: chain Ao residue 33 LEU Chi-restraints excluded: chain BM residue 138 VAL Chi-restraints excluded: chain Ar residue 58 THR Chi-restraints excluded: chain Aj residue 349 VAL Chi-restraints excluded: chain Aj residue 422 LEU Chi-restraints excluded: chain BH residue 225 ILE Chi-restraints excluded: chain Am residue 14 THR Chi-restraints excluded: chain Aq residue 336 ARG Chi-restraints excluded: chain Aq residue 339 ARG Chi-restraints excluded: chain Aq residue 341 PHE Chi-restraints excluded: chain Ad residue 27 HIS Chi-restraints excluded: chain Ad residue 64 ASP Chi-restraints excluded: chain BF residue 103 HIS Chi-restraints excluded: chain Av residue 42 THR Chi-restraints excluded: chain Ae residue 163 VAL Chi-restraints excluded: chain Ah residue 67 ARG Chi-restraints excluded: chain Ah residue 68 ILE Chi-restraints excluded: chain Ah residue 112 TYR Chi-restraints excluded: chain Ah residue 279 ASP Chi-restraints excluded: chain Ah residue 444 THR Chi-restraints excluded: chain Ay residue 51 TRP Chi-restraints excluded: chain Ax residue 57 THR Chi-restraints excluded: chain Ax residue 136 TYR Chi-restraints excluded: chain Ax residue 173 ARG Chi-restraints excluded: chain BL residue 132 HIS Chi-restraints excluded: chain BL residue 134 ARG Chi-restraints excluded: chain BL residue 141 TRP Chi-restraints excluded: chain BL residue 328 THR Chi-restraints excluded: chain BL residue 361 THR Chi-restraints excluded: chain BO residue 125 ILE Chi-restraints excluded: chain BO residue 128 VAL Chi-restraints excluded: chain BG residue 1282 THR Rotamers are restrained with sigma=5.00 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1575 random chunks: chunk 1329 optimal weight: 9.9990 chunk 1193 optimal weight: 5.9990 chunk 662 optimal weight: 2.9990 chunk 407 optimal weight: 1.9990 chunk 805 optimal weight: 5.9990 chunk 637 optimal weight: 0.4980 chunk 1234 optimal weight: 1.9990 chunk 477 optimal weight: 4.9990 chunk 750 optimal weight: 5.9990 chunk 918 optimal weight: 5.9990 chunk 1430 optimal weight: 6.9990 overall best weight: 2.4988 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Sorry: Reduce crashed with command 'molprobity.reduce -quiet -trim -'. Dumping stdin to file 'reduce_failure.pdb'. Return code: -15 Dumping stderr: