Starting phenix.real_space_refine on Sat Dec 9 13:34:53 2023 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7cf9_30343/12_2023/7cf9_30343_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7cf9_30343/12_2023/7cf9_30343.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=4.7 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7cf9_30343/12_2023/7cf9_30343.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7cf9_30343/12_2023/7cf9_30343.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7cf9_30343/12_2023/7cf9_30343_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7cf9_30343/12_2023/7cf9_30343_updated.pdb" } resolution = 4.7 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= 0.000 sd= 0.000 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 8 Type Number sf(0) Gaussians Ca 4 9.91 5 Br 4 7.06 5 Zn 4 6.06 5 S 724 5.16 5 Cl 8 4.86 5 C 74012 2.51 5 N 20704 2.21 5 O 20644 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "A PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 50": "OE1" <-> "OE2" Residue "A ARG 76": "NH1" <-> "NH2" Residue "A TYR 103": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 115": "NH1" <-> "NH2" Residue "A ASP 134": "OD1" <-> "OD2" Residue "A ARG 178": "NH1" <-> "NH2" Residue "A TYR 213": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 223": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 247": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 266": "NH1" <-> "NH2" Residue "A TYR 290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 314": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 316": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 397": "OE1" <-> "OE2" Residue "A TYR 411": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 419": "OD1" <-> "OD2" Residue "A ARG 426": "NH1" <-> "NH2" Residue "A ASP 447": "OD1" <-> "OD2" Residue "A PHE 478": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 480": "OE1" <-> "OE2" Residue "A GLU 481": "OE1" <-> "OE2" Residue "A GLU 517": "OE1" <-> "OE2" Residue "A ASP 545": "OD1" <-> "OD2" Residue "A PHE 674": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 712": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 714": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 716": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 742": "OD1" <-> "OD2" Residue "A ASP 749": "OD1" <-> "OD2" Residue "A GLU 769": "OE1" <-> "OE2" Residue "A TYR 808": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 1007": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 1076": "NH1" <-> "NH2" Residue "A GLU 1091": "OE1" <-> "OE2" Residue "A PHE 1092": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 1099": "OE1" <-> "OE2" Residue "A ASP 1112": "OD1" <-> "OD2" Residue "A GLU 1114": "OE1" <-> "OE2" Residue "A ASP 1186": "OD1" <-> "OD2" Residue "A GLU 1221": "OE1" <-> "OE2" Residue "A ARG 1232": "NH1" <-> "NH2" Residue "A PHE 1245": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 1255": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 1271": "NH1" <-> "NH2" Residue "A PHE 1301": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 1444": "OE1" <-> "OE2" Residue "A ASP 1456": "OD1" <-> "OD2" Residue "A ASP 1461": "OD1" <-> "OD2" Residue "A PHE 1464": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1500": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 1513": "OD1" <-> "OD2" Residue "A PHE 1529": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1549": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1564": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 1580": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 1607": "NH1" <-> "NH2" Residue "A GLU 1616": "OE1" <-> "OE2" Residue "A ARG 1623": "NH1" <-> "NH2" Residue "A GLU 1643": "OE1" <-> "OE2" Residue "A ARG 1656": "NH1" <-> "NH2" Residue "A ASP 1658": "OD1" <-> "OD2" Residue "A GLU 1721": "OE1" <-> "OE2" Residue "A ARG 1725": "NH1" <-> "NH2" Residue "A GLU 1733": "OE1" <-> "OE2" Residue "A TYR 1734": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 1743": "NH1" <-> "NH2" Residue "A ARG 1797": "NH1" <-> "NH2" Residue "A ARG 1827": "NH1" <-> "NH2" Residue "A GLU 1857": "OE1" <-> "OE2" Residue "A GLU 1956": "OE1" <-> "OE2" Residue "A ARG 1996": "NH1" <-> "NH2" Residue "A PHE 2012": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 2030": "OD1" <-> "OD2" Residue "A TYR 2128": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 2140": "NH1" <-> "NH2" Residue "A GLU 2175": "OE1" <-> "OE2" Residue "A GLU 2209": "OE1" <-> "OE2" Residue "A ARG 2244": "NH1" <-> "NH2" Residue "A ASP 2252": "OD1" <-> "OD2" Residue "A ASP 2282": "OD1" <-> "OD2" Residue "A TYR 2318": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 2340": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 2364": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 2425": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 2431": "OD1" <-> "OD2" Residue "A GLU 2439": "OE1" <-> "OE2" Residue "A GLU 2449": "OE1" <-> "OE2" Residue "A ARG 2452": "NH1" <-> "NH2" Residue "A ASP 2464": "OD1" <-> "OD2" Residue "A PHE 2494": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 2613": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 2625": "NH1" <-> "NH2" Residue "A ARG 3648": "NH1" <-> "NH2" Residue "A PHE 3669": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 3670": "OE1" <-> "OE2" Residue "A ASP 3671": "OD1" <-> "OD2" Residue "A ARG 3672": "NH1" <-> "NH2" Residue "A ASP 3676": "OD1" <-> "OD2" Residue "A ASP 3717": "OD1" <-> "OD2" Residue "A TYR 3725": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 3727": "OD1" <-> "OD2" Residue "A GLU 3757": "OE1" <-> "OE2" Residue "A GLU 3777": "OE1" <-> "OE2" Residue "A ASP 3822": "OD1" <-> "OD2" Residue "A ASP 3843": "OD1" <-> "OD2" Residue "A ASP 3877": "OD1" <-> "OD2" Residue "A GLU 3879": "OE1" <-> "OE2" Residue "A ASP 3883": "OD1" <-> "OD2" Residue "A ARG 3886": "NH1" <-> "NH2" Residue "A PHE 3899": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 3902": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 3904": "NH1" <-> "NH2" Residue "A GLU 3928": "OE1" <-> "OE2" Residue "A TYR 3937": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 3944": "OE1" <-> "OE2" Residue "A ARG 3949": "NH1" <-> "NH2" Residue "A ARG 3984": "NH1" <-> "NH2" Residue "A ASP 3987": "OD1" <-> "OD2" Residue "A GLU 4015": "OE1" <-> "OE2" Residue "A ASP 4018": "OD1" <-> "OD2" Residue "A ASP 4022": "OD1" <-> "OD2" Residue "A ARG 4042": "NH1" <-> "NH2" Residue "A ASP 4046": "OD1" <-> "OD2" Residue "A ASP 4063": "OD1" <-> "OD2" Residue "A PHE 4065": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4103": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4110": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4116": "OE1" <-> "OE2" Residue "A PHE 4125": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4127": "OE1" <-> "OE2" Residue "A GLU 4134": "OE1" <-> "OE2" Residue "A ARG 4137": "NH1" <-> "NH2" Residue "A ARG 4159": "NH1" <-> "NH2" Residue "A ARG 4175": "NH1" <-> "NH2" Residue "A GLU 4191": "OE1" <-> "OE2" Residue "A ARG 4192": "NH1" <-> "NH2" Residue "A TYR 4194": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4206": "OE1" <-> "OE2" Residue "A ARG 4215": "NH1" <-> "NH2" Residue "A PHE 4217": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4219": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4224": "OE1" <-> "OE2" Residue "A PHE 4234": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4239": "OE1" <-> "OE2" Residue "A ASP 4240": "OD1" <-> "OD2" Residue "A GLU 4244": "OE1" <-> "OE2" Residue "A ARG 4548": "NH1" <-> "NH2" Residue "A TYR 4554": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4557": "NH1" <-> "NH2" Residue "A TYR 4560": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4563": "NH1" <-> "NH2" Residue "A PHE 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 4638": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4655": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4673": "NH1" <-> "NH2" Residue "A GLU 4676": "OE1" <-> "OE2" Residue "A GLU 4682": "OE1" <-> "OE2" Residue "A PHE 4683": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 4684": "OD1" <-> "OD2" Residue "A ARG 4703": "NH1" <-> "NH2" Residue "A TYR 4715": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 4717": "OD1" <-> "OD2" Residue "A ARG 4722": "NH1" <-> "NH2" Residue "A ASP 4730": "OD1" <-> "OD2" Residue "A ARG 4734": "NH1" <-> "NH2" Residue "A ARG 4736": "NH1" <-> "NH2" Residue "A ASP 4786": "OD1" <-> "OD2" Residue "A TYR 4804": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4807": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4808": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 4815": "OD1" <-> "OD2" Residue "A ARG 4824": "NH1" <-> "NH2" Residue "A TYR 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4860": "NH1" <-> "NH2" Residue "A PHE 4885": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A TYR 4888": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 4892": "NH1" <-> "NH2" Residue "A ASP 4899": "OD1" <-> "OD2" Residue "A GLU 4900": "OE1" <-> "OE2" Residue "A ARG 4913": "NH1" <-> "NH2" Residue "A PHE 4921": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4923": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4948": "OE1" <-> "OE2" Residue "A PHE 4968": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A PHE 4975": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A GLU 4976": "OE1" <-> "OE2" Residue "A GLU 4982": "OE1" <-> "OE2" Residue "A TYR 4994": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ASP 4999": "OD1" <-> "OD2" Residue "A GLU 5000": "OE1" <-> "OE2" Residue "A GLU 5007": "OE1" <-> "OE2" Residue "A GLU 5016": "OE1" <-> "OE2" Residue "A ARG 5017": "NH1" <-> "NH2" Residue "A ASP 5020": "OD1" <-> "OD2" Residue "A ASP 5026": "OD1" <-> "OD2" Residue "A ARG 5029": "NH1" <-> "NH2" Residue "B GLU 3": "OE1" <-> "OE2" Residue "B PHE 15": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "B GLU 60": "OE1" <-> "OE2" Residue "C PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 50": "OE1" <-> "OE2" Residue "C ARG 76": "NH1" <-> "NH2" Residue "C TYR 103": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 115": "NH1" <-> "NH2" Residue "C ASP 134": "OD1" <-> "OD2" Residue "C ARG 178": "NH1" <-> "NH2" Residue "C TYR 213": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 223": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 247": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 266": "NH1" <-> "NH2" Residue "C TYR 290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 314": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 316": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 397": "OE1" <-> "OE2" Residue "C TYR 411": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 419": "OD1" <-> "OD2" Residue "C ARG 426": "NH1" <-> "NH2" Residue "C ASP 447": "OD1" <-> "OD2" Residue "C PHE 478": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 480": "OE1" <-> "OE2" Residue "C GLU 481": "OE1" <-> "OE2" Residue "C GLU 517": "OE1" <-> "OE2" Residue "C ASP 545": "OD1" <-> "OD2" Residue "C PHE 674": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 712": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 714": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 716": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 742": "OD1" <-> "OD2" Residue "C ASP 749": "OD1" <-> "OD2" Residue "C GLU 769": "OE1" <-> "OE2" Residue "C TYR 808": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 1007": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 1076": "NH1" <-> "NH2" Residue "C GLU 1091": "OE1" <-> "OE2" Residue "C PHE 1092": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 1099": "OE1" <-> "OE2" Residue "C ASP 1112": "OD1" <-> "OD2" Residue "C GLU 1114": "OE1" <-> "OE2" Residue "C ASP 1186": "OD1" <-> "OD2" Residue "C GLU 1221": "OE1" <-> "OE2" Residue "C ARG 1232": "NH1" <-> "NH2" Residue "C PHE 1245": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 1255": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 1271": "NH1" <-> "NH2" Residue "C PHE 1301": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 1444": "OE1" <-> "OE2" Residue "C ASP 1456": "OD1" <-> "OD2" Residue "C ASP 1461": "OD1" <-> "OD2" Residue "C PHE 1464": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 1500": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 1513": "OD1" <-> "OD2" Residue "C PHE 1529": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 1549": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 1564": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 1580": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 1607": "NH1" <-> "NH2" Residue "C GLU 1616": "OE1" <-> "OE2" Residue "C ARG 1623": "NH1" <-> "NH2" Residue "C GLU 1643": "OE1" <-> "OE2" Residue "C ARG 1656": "NH1" <-> "NH2" Residue "C ASP 1658": "OD1" <-> "OD2" Residue "C GLU 1721": "OE1" <-> "OE2" Residue "C ARG 1725": "NH1" <-> "NH2" Residue "C GLU 1733": "OE1" <-> "OE2" Residue "C TYR 1734": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 1743": "NH1" <-> "NH2" Residue "C ARG 1797": "NH1" <-> "NH2" Residue "C ARG 1827": "NH1" <-> "NH2" Residue "C GLU 1857": "OE1" <-> "OE2" Residue "C GLU 1956": "OE1" <-> "OE2" Residue "C ARG 1996": "NH1" <-> "NH2" Residue "C PHE 2012": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 2030": "OD1" <-> "OD2" Residue "C TYR 2128": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 2140": "NH1" <-> "NH2" Residue "C GLU 2175": "OE1" <-> "OE2" Residue "C GLU 2209": "OE1" <-> "OE2" Residue "C ARG 2244": "NH1" <-> "NH2" Residue "C ASP 2252": "OD1" <-> "OD2" Residue "C ASP 2282": "OD1" <-> "OD2" Residue "C TYR 2318": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 2340": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 2364": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 2425": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 2431": "OD1" <-> "OD2" Residue "C GLU 2439": "OE1" <-> "OE2" Residue "C GLU 2449": "OE1" <-> "OE2" Residue "C ARG 2452": "NH1" <-> "NH2" Residue "C ASP 2464": "OD1" <-> "OD2" Residue "C PHE 2494": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 2613": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 2625": "NH1" <-> "NH2" Residue "C ARG 3648": "NH1" <-> "NH2" Residue "C PHE 3669": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 3670": "OE1" <-> "OE2" Residue "C ASP 3671": "OD1" <-> "OD2" Residue "C ARG 3672": "NH1" <-> "NH2" Residue "C ASP 3676": "OD1" <-> "OD2" Residue "C ASP 3717": "OD1" <-> "OD2" Residue "C TYR 3725": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 3727": "OD1" <-> "OD2" Residue "C GLU 3757": "OE1" <-> "OE2" Residue "C GLU 3777": "OE1" <-> "OE2" Residue "C ASP 3822": "OD1" <-> "OD2" Residue "C ASP 3843": "OD1" <-> "OD2" Residue "C ASP 3877": "OD1" <-> "OD2" Residue "C GLU 3879": "OE1" <-> "OE2" Residue "C ASP 3883": "OD1" <-> "OD2" Residue "C ARG 3886": "NH1" <-> "NH2" Residue "C PHE 3899": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 3902": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 3904": "NH1" <-> "NH2" Residue "C GLU 3928": "OE1" <-> "OE2" Residue "C TYR 3937": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 3944": "OE1" <-> "OE2" Residue "C ARG 3949": "NH1" <-> "NH2" Residue "C ARG 3984": "NH1" <-> "NH2" Residue "C ASP 3987": "OD1" <-> "OD2" Residue "C GLU 4015": "OE1" <-> "OE2" Residue "C ASP 4018": "OD1" <-> "OD2" Residue "C ASP 4022": "OD1" <-> "OD2" Residue "C ARG 4042": "NH1" <-> "NH2" Residue "C ASP 4046": "OD1" <-> "OD2" Residue "C ASP 4063": "OD1" <-> "OD2" Residue "C PHE 4065": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 4103": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 4110": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 4116": "OE1" <-> "OE2" Residue "C PHE 4125": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 4127": "OE1" <-> "OE2" Residue "C GLU 4134": "OE1" <-> "OE2" Residue "C ARG 4137": "NH1" <-> "NH2" Residue "C ARG 4159": "NH1" <-> "NH2" Residue "C ARG 4175": "NH1" <-> "NH2" Residue "C GLU 4191": "OE1" <-> "OE2" Residue "C ARG 4192": "NH1" <-> "NH2" Residue "C TYR 4194": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 4206": "OE1" <-> "OE2" Residue "C ARG 4215": "NH1" <-> "NH2" Residue "C PHE 4217": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 4219": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 4224": "OE1" <-> "OE2" Residue "C PHE 4234": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 4239": "OE1" <-> "OE2" Residue "C ASP 4240": "OD1" <-> "OD2" Residue "C GLU 4244": "OE1" <-> "OE2" Residue "C ARG 4548": "NH1" <-> "NH2" Residue "C TYR 4554": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 4557": "NH1" <-> "NH2" Residue "C TYR 4560": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 4563": "NH1" <-> "NH2" Residue "C PHE 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 4638": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 4655": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 4673": "NH1" <-> "NH2" Residue "C GLU 4676": "OE1" <-> "OE2" Residue "C GLU 4682": "OE1" <-> "OE2" Residue "C PHE 4683": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 4684": "OD1" <-> "OD2" Residue "C ARG 4703": "NH1" <-> "NH2" Residue "C TYR 4715": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 4717": "OD1" <-> "OD2" Residue "C ARG 4722": "NH1" <-> "NH2" Residue "C ASP 4730": "OD1" <-> "OD2" Residue "C ARG 4734": "NH1" <-> "NH2" Residue "C ARG 4736": "NH1" <-> "NH2" Residue "C ASP 4786": "OD1" <-> "OD2" Residue "C TYR 4804": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 4807": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 4808": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 4815": "OD1" <-> "OD2" Residue "C ARG 4824": "NH1" <-> "NH2" Residue "C TYR 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 4860": "NH1" <-> "NH2" Residue "C PHE 4885": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C TYR 4888": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ARG 4892": "NH1" <-> "NH2" Residue "C ASP 4899": "OD1" <-> "OD2" Residue "C GLU 4900": "OE1" <-> "OE2" Residue "C ARG 4913": "NH1" <-> "NH2" Residue "C PHE 4921": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 4923": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 4938": "OD1" <-> "OD2" Residue "C GLU 4948": "OE1" <-> "OE2" Residue "C PHE 4968": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 4975": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 4976": "OE1" <-> "OE2" Residue "C GLU 4982": "OE1" <-> "OE2" Residue "C TYR 4994": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C ASP 4999": "OD1" <-> "OD2" Residue "C GLU 5000": "OE1" <-> "OE2" Residue "C GLU 5007": "OE1" <-> "OE2" Residue "C GLU 5016": "OE1" <-> "OE2" Residue "C ARG 5017": "NH1" <-> "NH2" Residue "C ASP 5020": "OD1" <-> "OD2" Residue "C ASP 5026": "OD1" <-> "OD2" Residue "C ARG 5029": "NH1" <-> "NH2" Residue "D GLU 3": "OE1" <-> "OE2" Residue "D PHE 15": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D GLU 60": "OE1" <-> "OE2" Residue "E PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 50": "OE1" <-> "OE2" Residue "E ARG 76": "NH1" <-> "NH2" Residue "E TYR 103": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 115": "NH1" <-> "NH2" Residue "E ASP 134": "OD1" <-> "OD2" Residue "E ARG 178": "NH1" <-> "NH2" Residue "E TYR 213": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 223": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 247": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 266": "NH1" <-> "NH2" Residue "E TYR 290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 314": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 316": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 397": "OE1" <-> "OE2" Residue "E TYR 411": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 419": "OD1" <-> "OD2" Residue "E ARG 426": "NH1" <-> "NH2" Residue "E ASP 447": "OD1" <-> "OD2" Residue "E PHE 478": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 480": "OE1" <-> "OE2" Residue "E GLU 481": "OE1" <-> "OE2" Residue "E GLU 517": "OE1" <-> "OE2" Residue "E ASP 545": "OD1" <-> "OD2" Residue "E PHE 674": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 712": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 714": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 716": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 742": "OD1" <-> "OD2" Residue "E ASP 749": "OD1" <-> "OD2" Residue "E GLU 769": "OE1" <-> "OE2" Residue "E TYR 808": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 1007": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 1076": "NH1" <-> "NH2" Residue "E GLU 1091": "OE1" <-> "OE2" Residue "E PHE 1092": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 1099": "OE1" <-> "OE2" Residue "E ASP 1112": "OD1" <-> "OD2" Residue "E GLU 1114": "OE1" <-> "OE2" Residue "E ASP 1186": "OD1" <-> "OD2" Residue "E GLU 1221": "OE1" <-> "OE2" Residue "E ARG 1232": "NH1" <-> "NH2" Residue "E PHE 1245": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 1255": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 1271": "NH1" <-> "NH2" Residue "E PHE 1301": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 1444": "OE1" <-> "OE2" Residue "E ASP 1456": "OD1" <-> "OD2" Residue "E ASP 1461": "OD1" <-> "OD2" Residue "E PHE 1464": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 1500": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 1513": "OD1" <-> "OD2" Residue "E PHE 1529": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 1549": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 1564": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 1580": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 1607": "NH1" <-> "NH2" Residue "E GLU 1616": "OE1" <-> "OE2" Residue "E ARG 1623": "NH1" <-> "NH2" Residue "E GLU 1643": "OE1" <-> "OE2" Residue "E ARG 1656": "NH1" <-> "NH2" Residue "E ASP 1658": "OD1" <-> "OD2" Residue "E GLU 1721": "OE1" <-> "OE2" Residue "E ARG 1725": "NH1" <-> "NH2" Residue "E GLU 1733": "OE1" <-> "OE2" Residue "E TYR 1734": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 1743": "NH1" <-> "NH2" Residue "E ARG 1797": "NH1" <-> "NH2" Residue "E ARG 1827": "NH1" <-> "NH2" Residue "E GLU 1857": "OE1" <-> "OE2" Residue "E GLU 1956": "OE1" <-> "OE2" Residue "E ARG 1996": "NH1" <-> "NH2" Residue "E PHE 2012": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 2030": "OD1" <-> "OD2" Residue "E TYR 2128": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 2140": "NH1" <-> "NH2" Residue "E GLU 2175": "OE1" <-> "OE2" Residue "E GLU 2209": "OE1" <-> "OE2" Residue "E ARG 2244": "NH1" <-> "NH2" Residue "E ASP 2252": "OD1" <-> "OD2" Residue "E ASP 2282": "OD1" <-> "OD2" Residue "E TYR 2318": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 2340": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 2364": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 2425": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 2431": "OD1" <-> "OD2" Residue "E GLU 2439": "OE1" <-> "OE2" Residue "E GLU 2449": "OE1" <-> "OE2" Residue "E ARG 2452": "NH1" <-> "NH2" Residue "E ASP 2464": "OD1" <-> "OD2" Residue "E PHE 2494": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 2613": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 2625": "NH1" <-> "NH2" Residue "E ARG 3648": "NH1" <-> "NH2" Residue "E PHE 3669": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 3670": "OE1" <-> "OE2" Residue "E ASP 3671": "OD1" <-> "OD2" Residue "E ARG 3672": "NH1" <-> "NH2" Residue "E ASP 3676": "OD1" <-> "OD2" Residue "E ASP 3717": "OD1" <-> "OD2" Residue "E TYR 3725": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 3727": "OD1" <-> "OD2" Residue "E GLU 3757": "OE1" <-> "OE2" Residue "E GLU 3777": "OE1" <-> "OE2" Residue "E ASP 3822": "OD1" <-> "OD2" Residue "E ASP 3843": "OD1" <-> "OD2" Residue "E ASP 3877": "OD1" <-> "OD2" Residue "E GLU 3879": "OE1" <-> "OE2" Residue "E ASP 3883": "OD1" <-> "OD2" Residue "E ARG 3886": "NH1" <-> "NH2" Residue "E PHE 3899": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 3902": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 3904": "NH1" <-> "NH2" Residue "E GLU 3928": "OE1" <-> "OE2" Residue "E TYR 3937": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 3944": "OE1" <-> "OE2" Residue "E ARG 3949": "NH1" <-> "NH2" Residue "E ARG 3984": "NH1" <-> "NH2" Residue "E ASP 3987": "OD1" <-> "OD2" Residue "E GLU 4015": "OE1" <-> "OE2" Residue "E ASP 4018": "OD1" <-> "OD2" Residue "E ASP 4022": "OD1" <-> "OD2" Residue "E ARG 4042": "NH1" <-> "NH2" Residue "E ASP 4046": "OD1" <-> "OD2" Residue "E ASP 4063": "OD1" <-> "OD2" Residue "E PHE 4065": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 4103": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 4110": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 4116": "OE1" <-> "OE2" Residue "E PHE 4125": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 4127": "OE1" <-> "OE2" Residue "E GLU 4134": "OE1" <-> "OE2" Residue "E ARG 4137": "NH1" <-> "NH2" Residue "E ARG 4159": "NH1" <-> "NH2" Residue "E ARG 4175": "NH1" <-> "NH2" Residue "E GLU 4191": "OE1" <-> "OE2" Residue "E ARG 4192": "NH1" <-> "NH2" Residue "E TYR 4194": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 4206": "OE1" <-> "OE2" Residue "E ARG 4215": "NH1" <-> "NH2" Residue "E PHE 4217": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 4219": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 4224": "OE1" <-> "OE2" Residue "E PHE 4234": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 4239": "OE1" <-> "OE2" Residue "E ASP 4240": "OD1" <-> "OD2" Residue "E GLU 4244": "OE1" <-> "OE2" Residue "E ARG 4548": "NH1" <-> "NH2" Residue "E TYR 4554": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4557": "NH1" <-> "NH2" Residue "E TYR 4560": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4563": "NH1" <-> "NH2" Residue "E PHE 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 4638": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 4655": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4673": "NH1" <-> "NH2" Residue "E GLU 4676": "OE1" <-> "OE2" Residue "E GLU 4682": "OE1" <-> "OE2" Residue "E PHE 4683": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 4684": "OD1" <-> "OD2" Residue "E ARG 4703": "NH1" <-> "NH2" Residue "E TYR 4715": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 4717": "OD1" <-> "OD2" Residue "E ARG 4722": "NH1" <-> "NH2" Residue "E ASP 4730": "OD1" <-> "OD2" Residue "E ARG 4734": "NH1" <-> "NH2" Residue "E ARG 4736": "NH1" <-> "NH2" Residue "E ASP 4786": "OD1" <-> "OD2" Residue "E TYR 4804": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 4807": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 4808": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 4815": "OD1" <-> "OD2" Residue "E ARG 4824": "NH1" <-> "NH2" Residue "E TYR 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4860": "NH1" <-> "NH2" Residue "E PHE 4885": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E TYR 4888": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ARG 4892": "NH1" <-> "NH2" Residue "E ASP 4899": "OD1" <-> "OD2" Residue "E GLU 4900": "OE1" <-> "OE2" Residue "E ARG 4913": "NH1" <-> "NH2" Residue "E PHE 4921": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 4923": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 4938": "OD1" <-> "OD2" Residue "E GLU 4948": "OE1" <-> "OE2" Residue "E PHE 4968": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E PHE 4975": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E GLU 4976": "OE1" <-> "OE2" Residue "E GLU 4982": "OE1" <-> "OE2" Residue "E TYR 4994": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "E ASP 4999": "OD1" <-> "OD2" Residue "E GLU 5000": "OE1" <-> "OE2" Residue "E GLU 5007": "OE1" <-> "OE2" Residue "E GLU 5016": "OE1" <-> "OE2" Residue "E ARG 5017": "NH1" <-> "NH2" Residue "E ASP 5020": "OD1" <-> "OD2" Residue "E ASP 5026": "OD1" <-> "OD2" Residue "E ARG 5029": "NH1" <-> "NH2" Residue "F GLU 3": "OE1" <-> "OE2" Residue "F PHE 15": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "F GLU 60": "OE1" <-> "OE2" Residue "G PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 50": "OE1" <-> "OE2" Residue "G ARG 76": "NH1" <-> "NH2" Residue "G TYR 103": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 115": "NH1" <-> "NH2" Residue "G ASP 134": "OD1" <-> "OD2" Residue "G ARG 178": "NH1" <-> "NH2" Residue "G TYR 213": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 223": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 247": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 266": "NH1" <-> "NH2" Residue "G TYR 290": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 314": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 316": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 397": "OE1" <-> "OE2" Residue "G TYR 411": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 419": "OD1" <-> "OD2" Residue "G ARG 426": "NH1" <-> "NH2" Residue "G ASP 447": "OD1" <-> "OD2" Residue "G PHE 478": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 480": "OE1" <-> "OE2" Residue "G GLU 481": "OE1" <-> "OE2" Residue "G GLU 517": "OE1" <-> "OE2" Residue "G ASP 545": "OD1" <-> "OD2" Residue "G PHE 674": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 712": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 714": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 716": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 742": "OD1" <-> "OD2" Residue "G ASP 749": "OD1" <-> "OD2" Residue "G GLU 769": "OE1" <-> "OE2" Residue "G TYR 808": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 1007": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 1076": "NH1" <-> "NH2" Residue "G GLU 1091": "OE1" <-> "OE2" Residue "G PHE 1092": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 1099": "OE1" <-> "OE2" Residue "G ASP 1112": "OD1" <-> "OD2" Residue "G GLU 1114": "OE1" <-> "OE2" Residue "G ASP 1186": "OD1" <-> "OD2" Residue "G GLU 1221": "OE1" <-> "OE2" Residue "G ARG 1232": "NH1" <-> "NH2" Residue "G PHE 1245": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 1255": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 1271": "NH1" <-> "NH2" Residue "G PHE 1301": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 1444": "OE1" <-> "OE2" Residue "G ASP 1456": "OD1" <-> "OD2" Residue "G ASP 1461": "OD1" <-> "OD2" Residue "G PHE 1464": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1500": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 1513": "OD1" <-> "OD2" Residue "G PHE 1529": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1549": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1564": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 1580": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 1607": "NH1" <-> "NH2" Residue "G GLU 1616": "OE1" <-> "OE2" Residue "G ARG 1623": "NH1" <-> "NH2" Residue "G GLU 1643": "OE1" <-> "OE2" Residue "G ARG 1656": "NH1" <-> "NH2" Residue "G ASP 1658": "OD1" <-> "OD2" Residue "G GLU 1721": "OE1" <-> "OE2" Residue "G ARG 1725": "NH1" <-> "NH2" Residue "G GLU 1733": "OE1" <-> "OE2" Residue "G TYR 1734": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 1743": "NH1" <-> "NH2" Residue "G ARG 1797": "NH1" <-> "NH2" Residue "G ARG 1827": "NH1" <-> "NH2" Residue "G GLU 1857": "OE1" <-> "OE2" Residue "G GLU 1956": "OE1" <-> "OE2" Residue "G ARG 1996": "NH1" <-> "NH2" Residue "G PHE 2012": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 2030": "OD1" <-> "OD2" Residue "G TYR 2128": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 2140": "NH1" <-> "NH2" Residue "G GLU 2175": "OE1" <-> "OE2" Residue "G GLU 2209": "OE1" <-> "OE2" Residue "G ARG 2244": "NH1" <-> "NH2" Residue "G ASP 2252": "OD1" <-> "OD2" Residue "G ASP 2282": "OD1" <-> "OD2" Residue "G TYR 2318": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 2340": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 2364": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 2425": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 2431": "OD1" <-> "OD2" Residue "G GLU 2439": "OE1" <-> "OE2" Residue "G GLU 2449": "OE1" <-> "OE2" Residue "G ARG 2452": "NH1" <-> "NH2" Residue "G ASP 2464": "OD1" <-> "OD2" Residue "G PHE 2494": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 2613": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 2625": "NH1" <-> "NH2" Residue "G ARG 3648": "NH1" <-> "NH2" Residue "G PHE 3669": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 3670": "OE1" <-> "OE2" Residue "G ASP 3671": "OD1" <-> "OD2" Residue "G ARG 3672": "NH1" <-> "NH2" Residue "G ASP 3676": "OD1" <-> "OD2" Residue "G ASP 3717": "OD1" <-> "OD2" Residue "G TYR 3725": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 3727": "OD1" <-> "OD2" Residue "G GLU 3757": "OE1" <-> "OE2" Residue "G GLU 3777": "OE1" <-> "OE2" Residue "G ASP 3822": "OD1" <-> "OD2" Residue "G ASP 3843": "OD1" <-> "OD2" Residue "G ASP 3877": "OD1" <-> "OD2" Residue "G GLU 3879": "OE1" <-> "OE2" Residue "G ASP 3883": "OD1" <-> "OD2" Residue "G ARG 3886": "NH1" <-> "NH2" Residue "G PHE 3899": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 3902": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 3904": "NH1" <-> "NH2" Residue "G GLU 3928": "OE1" <-> "OE2" Residue "G TYR 3937": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 3944": "OE1" <-> "OE2" Residue "G ARG 3949": "NH1" <-> "NH2" Residue "G ARG 3984": "NH1" <-> "NH2" Residue "G ASP 3987": "OD1" <-> "OD2" Residue "G GLU 4015": "OE1" <-> "OE2" Residue "G ASP 4018": "OD1" <-> "OD2" Residue "G ASP 4022": "OD1" <-> "OD2" Residue "G ARG 4042": "NH1" <-> "NH2" Residue "G ASP 4046": "OD1" <-> "OD2" Residue "G ASP 4063": "OD1" <-> "OD2" Residue "G PHE 4065": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4103": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4110": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 4116": "OE1" <-> "OE2" Residue "G PHE 4125": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 4127": "OE1" <-> "OE2" Residue "G GLU 4134": "OE1" <-> "OE2" Residue "G ARG 4137": "NH1" <-> "NH2" Residue "G ARG 4159": "NH1" <-> "NH2" Residue "G ARG 4175": "NH1" <-> "NH2" Residue "G GLU 4191": "OE1" <-> "OE2" Residue "G ARG 4192": "NH1" <-> "NH2" Residue "G TYR 4194": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 4206": "OE1" <-> "OE2" Residue "G ARG 4215": "NH1" <-> "NH2" Residue "G PHE 4217": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4219": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 4224": "OE1" <-> "OE2" Residue "G PHE 4234": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 4239": "OE1" <-> "OE2" Residue "G ASP 4240": "OD1" <-> "OD2" Residue "G GLU 4244": "OE1" <-> "OE2" Residue "G ARG 4548": "NH1" <-> "NH2" Residue "G TYR 4554": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4557": "NH1" <-> "NH2" Residue "G TYR 4560": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4563": "NH1" <-> "NH2" Residue "G PHE 4568": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 4638": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4655": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4673": "NH1" <-> "NH2" Residue "G GLU 4676": "OE1" <-> "OE2" Residue "G GLU 4682": "OE1" <-> "OE2" Residue "G PHE 4683": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 4684": "OD1" <-> "OD2" Residue "G ARG 4703": "NH1" <-> "NH2" Residue "G TYR 4715": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 4717": "OD1" <-> "OD2" Residue "G ARG 4722": "NH1" <-> "NH2" Residue "G ASP 4730": "OD1" <-> "OD2" Residue "G ARG 4734": "NH1" <-> "NH2" Residue "G ARG 4736": "NH1" <-> "NH2" Residue "G ASP 4786": "OD1" <-> "OD2" Residue "G TYR 4804": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4807": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4808": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 4815": "OD1" <-> "OD2" Residue "G ARG 4824": "NH1" <-> "NH2" Residue "G TYR 4851": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4860": "NH1" <-> "NH2" Residue "G PHE 4885": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G TYR 4888": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ARG 4892": "NH1" <-> "NH2" Residue "G ASP 4899": "OD1" <-> "OD2" Residue "G GLU 4900": "OE1" <-> "OE2" Residue "G ARG 4913": "NH1" <-> "NH2" Residue "G PHE 4921": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4923": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 4938": "OD1" <-> "OD2" Residue "G GLU 4948": "OE1" <-> "OE2" Residue "G PHE 4968": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 4975": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 4976": "OE1" <-> "OE2" Residue "G GLU 4982": "OE1" <-> "OE2" Residue "G TYR 4994": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G ASP 4999": "OD1" <-> "OD2" Residue "G GLU 5000": "OE1" <-> "OE2" Residue "G GLU 5007": "OE1" <-> "OE2" Residue "G GLU 5016": "OE1" <-> "OE2" Residue "G ARG 5017": "NH1" <-> "NH2" Residue "G ASP 5020": "OD1" <-> "OD2" Residue "G ASP 5026": "OD1" <-> "OD2" Residue "G ARG 5029": "NH1" <-> "NH2" Residue "H GLU 3": "OE1" <-> "OE2" Residue "H PHE 15": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H PHE 48": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "H GLU 60": "OE1" <-> "OE2" Time to flip residues: 0.37s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-1.21rc1-5172/modules/chem_data/mon_lib" Total number of atoms: 116104 Number of models: 1 Model: "" Number of chains: 12 Chain: "A" Number of atoms: 28192 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3949, 28192 Classifications: {'peptide': 3949} Incomplete info: {'truncation_to_alanine': 1016} Link IDs: {'PTRANS': 162, 'TRANS': 3786} Chain breaks: 59 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 3014 Unresolved non-hydrogen angles: 4002 Unresolved non-hydrogen dihedrals: 2167 Unresolved non-hydrogen chiralities: 90 Planarities with less than four sites: {'GLN:plan1': 32, 'ARG:plan': 36, 'TYR:plan': 10, 'ASN:plan1': 22, 'TRP:plan': 8, 'HIS:plan': 13, 'PHE:plan': 8, 'GLU:plan': 156, 'ASP:plan': 75, 'UNK:plan-1': 452} Unresolved non-hydrogen planarities: 1930 Chain: "B" Number of atoms: 804 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 804 Classifications: {'peptide': 107} Incomplete info: {'truncation_to_alanine': 4} Link IDs: {'PTRANS': 7, 'TRANS': 99} Unresolved non-hydrogen bonds: 14 Unresolved non-hydrogen angles: 18 Unresolved non-hydrogen dihedrals: 10 Planarities with less than four sites: {'GLU:plan': 2, 'ASP:plan': 2} Unresolved non-hydrogen planarities: 14 Chain: "C" Number of atoms: 28192 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3949, 28192 Classifications: {'peptide': 3949} Incomplete info: {'truncation_to_alanine': 1016} Link IDs: {'PTRANS': 162, 'TRANS': 3786} Chain breaks: 59 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 3014 Unresolved non-hydrogen angles: 4002 Unresolved non-hydrogen dihedrals: 2167 Unresolved non-hydrogen chiralities: 90 Planarities with less than four sites: {'GLN:plan1': 32, 'ARG:plan': 36, 'TYR:plan': 10, 'ASN:plan1': 22, 'TRP:plan': 8, 'HIS:plan': 13, 'PHE:plan': 8, 'GLU:plan': 156, 'ASP:plan': 75, 'UNK:plan-1': 452} Unresolved non-hydrogen planarities: 1930 Chain: "D" Number of atoms: 804 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 804 Classifications: {'peptide': 107} Incomplete info: {'truncation_to_alanine': 4} Link IDs: {'PTRANS': 7, 'TRANS': 99} Unresolved non-hydrogen bonds: 14 Unresolved non-hydrogen angles: 18 Unresolved non-hydrogen dihedrals: 10 Planarities with less than four sites: {'GLU:plan': 2, 'ASP:plan': 2} Unresolved non-hydrogen planarities: 14 Chain: "E" Number of atoms: 28192 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3949, 28192 Classifications: {'peptide': 3949} Incomplete info: {'truncation_to_alanine': 1016} Link IDs: {'PTRANS': 162, 'TRANS': 3786} Chain breaks: 59 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 3014 Unresolved non-hydrogen angles: 4002 Unresolved non-hydrogen dihedrals: 2167 Unresolved non-hydrogen chiralities: 90 Planarities with less than four sites: {'GLN:plan1': 32, 'ARG:plan': 36, 'TYR:plan': 10, 'ASN:plan1': 22, 'TRP:plan': 8, 'HIS:plan': 13, 'PHE:plan': 8, 'GLU:plan': 156, 'ASP:plan': 75, 'UNK:plan-1': 452} Unresolved non-hydrogen planarities: 1930 Chain: "F" Number of atoms: 804 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 804 Classifications: {'peptide': 107} Incomplete info: {'truncation_to_alanine': 4} Link IDs: {'PTRANS': 7, 'TRANS': 99} Unresolved non-hydrogen bonds: 14 Unresolved non-hydrogen angles: 18 Unresolved non-hydrogen dihedrals: 10 Planarities with less than four sites: {'GLU:plan': 2, 'ASP:plan': 2} Unresolved non-hydrogen planarities: 14 Chain: "G" Number of atoms: 28192 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3949, 28192 Classifications: {'peptide': 3949} Incomplete info: {'truncation_to_alanine': 1016} Link IDs: {'PTRANS': 162, 'TRANS': 3786} Chain breaks: 59 Unresolved chain link angles: 13 Unresolved non-hydrogen bonds: 3014 Unresolved non-hydrogen angles: 4002 Unresolved non-hydrogen dihedrals: 2167 Unresolved non-hydrogen chiralities: 90 Planarities with less than four sites: {'GLN:plan1': 32, 'ARG:plan': 36, 'TYR:plan': 10, 'ASN:plan1': 22, 'TRP:plan': 8, 'HIS:plan': 13, 'PHE:plan': 8, 'GLU:plan': 156, 'ASP:plan': 75, 'UNK:plan-1': 452} Unresolved non-hydrogen planarities: 1930 Chain: "H" Number of atoms: 804 Number of conformers: 1 Conformer: "" Number of residues, atoms: 107, 804 Classifications: {'peptide': 107} Incomplete info: {'truncation_to_alanine': 4} Link IDs: {'PTRANS': 7, 'TRANS': 99} Unresolved non-hydrogen bonds: 14 Unresolved non-hydrogen angles: 18 Unresolved non-hydrogen dihedrals: 10 Planarities with less than four sites: {'GLU:plan': 2, 'ASP:plan': 2} Unresolved non-hydrogen planarities: 14 Chain: "A" Number of atoms: 30 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3, 30 Unusual residues: {' CA': 1, ' ZN': 1, 'F0U': 1} Classifications: {'undetermined': 3} Link IDs: {None: 2} Chain: "C" Number of atoms: 30 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3, 30 Unusual residues: {' CA': 1, ' ZN': 1, 'F0U': 1} Classifications: {'undetermined': 3} Link IDs: {None: 2} Chain: "E" Number of atoms: 30 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3, 30 Unusual residues: {' CA': 1, ' ZN': 1, 'F0U': 1} Classifications: {'undetermined': 3} Link IDs: {None: 2} Chain: "G" Number of atoms: 30 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3, 30 Unusual residues: {' CA': 1, ' ZN': 1, 'F0U': 1} Classifications: {'undetermined': 3} Link IDs: {None: 2} List of CYS excluded from plausible disulfide bonds: (reason: may participate in coordination) ATOM 27531 SG CYS A4958 177.165 201.532 112.734 1.00139.32 S ATOM 56527 SG CYS C4958 201.528 185.720 112.734 1.00139.40 S ATOM 85523 SG CYS E4958 185.716 161.355 112.734 1.00141.08 S ATOM A0B7B SG CYS G4958 161.353 177.167 112.733 1.00141.66 S Time building chain proxies: 42.54, per 1000 atoms: 0.37 Number of scatterers: 116104 At special positions: 0 Unit cell: (363.96, 363.96, 200.88, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 8 Type Number sf(0) Br 4 34.99 Zn 4 29.99 Ca 4 19.99 Cl 8 17.00 S 724 16.00 O 20644 8.00 N 20704 7.00 C 74012 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=0, symmetry=0 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=0, symmetry=0 Time building additional restraints: 31.38 Conformation dependent library (CDL) restraints added in 15.3 seconds Dynamic metal coordination Zn2+ tetrahedral coordination pdb=" ZN A5202 " pdb="ZN ZN A5202 " - pdb=" ND1 HIS A4983 " pdb="ZN ZN A5202 " - pdb=" SG CYS A4958 " pdb="ZN ZN A5202 " - pdb=" NE2 HIS A4978 " pdb=" ZN C5202 " pdb="ZN ZN C5202 " - pdb=" ND1 HIS C4983 " pdb="ZN ZN C5202 " - pdb=" SG CYS C4958 " pdb="ZN ZN C5202 " - pdb=" NE2 HIS C4978 " pdb=" ZN E5202 " pdb="ZN ZN E5202 " - pdb=" ND1 HIS E4983 " pdb="ZN ZN E5202 " - pdb=" SG CYS E4958 " pdb="ZN ZN E5202 " - pdb=" NE2 HIS E4978 " pdb=" ZN G5202 " pdb="ZN ZN G5202 " - pdb=" ND1 HIS G4983 " pdb="ZN ZN G5202 " - pdb=" SG CYS G4958 " pdb="ZN ZN G5202 " - pdb=" NE2 HIS G4978 " 28256 Ramachandran restraints generated. 14128 Oldfield, 0 Emsley, 14128 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 30656 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 532 helices and 72 sheets defined 54.7% alpha, 7.2% beta 0 base pairs and 0 stacking pairs defined. Time for finding SS restraints: 28.91 Creating SS restraints... Processing helix chain 'A' and resid 61 through 66 removed outlier: 4.759A pdb=" N CYS A 65 " --> pdb=" O ASP A 61 " (cutoff:3.500A) Processing helix chain 'A' and resid 77 through 84 removed outlier: 4.722A pdb=" N MET A 81 " --> pdb=" O ALA A 77 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N ALA A 83 " --> pdb=" O GLN A 79 " (cutoff:3.500A) Processing helix chain 'A' and resid 249 through 256 removed outlier: 3.847A pdb=" N CYS A 253 " --> pdb=" O GLY A 249 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N THR A 254 " --> pdb=" O GLY A 250 " (cutoff:3.500A) removed outlier: 4.642A pdb=" N HIS A 255 " --> pdb=" O ALA A 251 " (cutoff:3.500A) removed outlier: 5.444A pdb=" N ALA A 256 " --> pdb=" O VAL A 252 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 249 through 256' Processing helix chain 'A' and resid 394 through 423 removed outlier: 4.600A pdb=" N SER A 398 " --> pdb=" O GLN A 394 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N GLN A 399 " --> pdb=" O GLN A 395 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N ALA A 400 " --> pdb=" O GLU A 396 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N HIS A 405 " --> pdb=" O ALA A 401 " (cutoff:3.500A) removed outlier: 3.589A pdb=" N GLN A 413 " --> pdb=" O GLY A 409 " (cutoff:3.500A) removed outlier: 4.171A pdb=" N ASP A 419 " --> pdb=" O ILE A 415 " (cutoff:3.500A) removed outlier: 4.105A pdb=" N SER A 420 " --> pdb=" O LYS A 416 " (cutoff:3.500A) removed outlier: 4.693A pdb=" N PHE A 421 " --> pdb=" O GLY A 417 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N SER A 422 " --> pdb=" O LEU A 418 " (cutoff:3.500A) removed outlier: 4.567A pdb=" N GLY A 423 " --> pdb=" O ASP A 419 " (cutoff:3.500A) Processing helix chain 'A' and resid 437 through 453 removed outlier: 4.185A pdb=" N LEU A 443 " --> pdb=" O GLU A 439 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N SER A 444 " --> pdb=" O ALA A 440 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N LEU A 445 " --> pdb=" O VAL A 441 " (cutoff:3.500A) removed outlier: 4.898A pdb=" N GLN A 446 " --> pdb=" O ILE A 442 " (cutoff:3.500A) removed outlier: 4.679A pdb=" N ASP A 447 " --> pdb=" O LEU A 443 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N LEU A 448 " --> pdb=" O SER A 444 " (cutoff:3.500A) Processing helix chain 'A' and resid 460 through 482 removed outlier: 3.809A pdb=" N GLN A 465 " --> pdb=" O HIS A 461 " (cutoff:3.500A) removed outlier: 4.367A pdb=" N SER A 466 " --> pdb=" O GLU A 462 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LYS A 467 " --> pdb=" O GLU A 463 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N ASN A 473 " --> pdb=" O ARG A 469 " (cutoff:3.500A) removed outlier: 4.046A pdb=" N GLU A 480 " --> pdb=" O SER A 476 " (cutoff:3.500A) removed outlier: 4.555A pdb=" N GLU A 481 " --> pdb=" O LEU A 477 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N GLY A 482 " --> pdb=" O PHE A 478 " (cutoff:3.500A) Processing helix chain 'A' and resid 483 through 495 removed outlier: 5.369A pdb=" N VAL A 487 " --> pdb=" O MET A 483 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N LEU A 488 " --> pdb=" O LEU A 484 " (cutoff:3.500A) removed outlier: 5.527A pdb=" N ARG A 493 " --> pdb=" O ASN A 489 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU A 494 " --> pdb=" O CYS A 490 " (cutoff:3.500A) Processing helix chain 'A' and resid 508 through 531 removed outlier: 3.764A pdb=" N SER A 514 " --> pdb=" O GLU A 510 " (cutoff:3.500A) removed outlier: 5.791A pdb=" N LYS A 516 " --> pdb=" O ALA A 512 " (cutoff:3.500A) removed outlier: 5.638A pdb=" N GLU A 517 " --> pdb=" O GLU A 513 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N ILE A 518 " --> pdb=" O SER A 514 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N VAL A 519 " --> pdb=" O TRP A 515 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N LEU A 521 " --> pdb=" O GLU A 517 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N GLU A 524 " --> pdb=" O ASN A 520 " (cutoff:3.500A) Processing helix chain 'A' and resid 533 through 542 removed outlier: 4.583A pdb=" N CYS A 537 " --> pdb=" O ASN A 533 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N ALA A 538 " --> pdb=" O ARG A 534 " (cutoff:3.500A) removed outlier: 5.430A pdb=" N LEU A 539 " --> pdb=" O ALA A 535 " (cutoff:3.500A) removed outlier: 4.431A pdb=" N PHE A 540 " --> pdb=" O ASN A 536 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N SER A 541 " --> pdb=" O CYS A 537 " (cutoff:3.500A) removed outlier: 4.999A pdb=" N THR A 542 " --> pdb=" O ALA A 538 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 533 through 542' Processing helix chain 'A' and resid 543 through 551 removed outlier: 4.024A pdb=" N VAL A 547 " --> pdb=" O ASN A 543 " (cutoff:3.500A) removed outlier: 4.337A pdb=" N LYS A 550 " --> pdb=" O TRP A 546 " (cutoff:3.500A) removed outlier: 5.396A pdb=" N LEU A 551 " --> pdb=" O VAL A 547 " (cutoff:3.500A) Processing helix chain 'A' and resid 556 through 571 removed outlier: 4.411A pdb=" N ILE A 560 " --> pdb=" O ALA A 556 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N LEU A 561 " --> pdb=" O SER A 557 " (cutoff:3.500A) removed outlier: 4.661A pdb=" N GLU A 562 " --> pdb=" O SER A 558 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N CYS A 566 " --> pdb=" O GLU A 562 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N LEU A 568 " --> pdb=" O LEU A 564 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N ILE A 569 " --> pdb=" O TYR A 565 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N GLU A 570 " --> pdb=" O CYS A 566 " (cutoff:3.500A) removed outlier: 4.433A pdb=" N SER A 571 " --> pdb=" O VAL A 567 " (cutoff:3.500A) Processing helix chain 'A' and resid 579 through 593 removed outlier: 3.766A pdb=" N ILE A 583 " --> pdb=" O GLN A 579 " (cutoff:3.500A) removed outlier: 4.287A pdb=" N LYS A 584 " --> pdb=" O GLU A 580 " (cutoff:3.500A) removed outlier: 5.528A pdb=" N SER A 585 " --> pdb=" O ASN A 581 " (cutoff:3.500A) removed outlier: 4.362A pdb=" N ILE A 586 " --> pdb=" O HIS A 582 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N ILE A 587 " --> pdb=" O ILE A 583 " (cutoff:3.500A) Processing helix chain 'A' and resid 596 through 609 removed outlier: 4.705A pdb=" N LEU A 600 " --> pdb=" O ASN A 596 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N ASP A 601 " --> pdb=" O HIS A 597 " (cutoff:3.500A) removed outlier: 4.278A pdb=" N VAL A 602 " --> pdb=" O LYS A 598 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N LEU A 603 " --> pdb=" O VAL A 599 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N CYS A 607 " --> pdb=" O LEU A 603 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N VAL A 608 " --> pdb=" O CYS A 604 " (cutoff:3.500A) removed outlier: 5.087A pdb=" N CYS A 609 " --> pdb=" O SER A 605 " (cutoff:3.500A) Processing helix chain 'A' and resid 614 through 629 removed outlier: 3.844A pdb=" N GLN A 618 " --> pdb=" O VAL A 614 " (cutoff:3.500A) removed outlier: 4.970A pdb=" N ASP A 619 " --> pdb=" O ARG A 615 " (cutoff:3.500A) removed outlier: 5.872A pdb=" N LEU A 620 " --> pdb=" O SER A 616 " (cutoff:3.500A) removed outlier: 5.004A pdb=" N ILE A 621 " --> pdb=" O ASN A 617 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N THR A 622 " --> pdb=" O GLN A 618 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N ASN A 624 " --> pdb=" O LEU A 620 " (cutoff:3.500A) removed outlier: 4.670A pdb=" N LEU A 626 " --> pdb=" O THR A 622 " (cutoff:3.500A) Proline residue: A 627 - end of helix Processing helix chain 'A' and resid 864 through 890 removed outlier: 4.318A pdb=" N GLU A 868 " --> pdb=" O PRO A 864 " (cutoff:3.500A) removed outlier: 5.668A pdb=" N ARG A 869 " --> pdb=" O PRO A 865 " (cutoff:3.500A) removed outlier: 5.992A pdb=" N ILE A 870 " --> pdb=" O HIS A 866 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ARG A 871 " --> pdb=" O LEU A 867 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N GLU A 872 " --> pdb=" O GLU A 868 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N ALA A 875 " --> pdb=" O ARG A 871 " (cutoff:3.500A) removed outlier: 3.997A pdb=" N THR A 885 " --> pdb=" O LEU A 881 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N ARG A 886 " --> pdb=" O TRP A 882 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N GLU A 888 " --> pdb=" O LEU A 884 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N GLN A 889 " --> pdb=" O THR A 885 " (cutoff:3.500A) Processing helix chain 'A' and resid 909 through 914 removed outlier: 3.928A pdb=" N LEU A 913 " --> pdb=" O ASN A 909 " (cutoff:3.500A) Proline residue: A 914 - end of helix No H-bonds generated for 'chain 'A' and resid 909 through 914' Processing helix chain 'A' and resid 915 through 936 removed outlier: 3.870A pdb=" N TYR A 920 " --> pdb=" O PRO A 916 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ASN A 921 " --> pdb=" O GLU A 917 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N LYS A 930 " --> pdb=" O GLY A 926 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N THR A 931 " --> pdb=" O GLU A 927 " (cutoff:3.500A) removed outlier: 4.732A pdb=" N LEU A 932 " --> pdb=" O THR A 928 " (cutoff:3.500A) removed outlier: 5.114A pdb=" N LEU A 933 " --> pdb=" O LEU A 929 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N ALA A 934 " --> pdb=" O LYS A 930 " (cutoff:3.500A) removed outlier: 4.489A pdb=" N LEU A 935 " --> pdb=" O THR A 931 " (cutoff:3.500A) removed outlier: 4.055A pdb=" N GLY A 936 " --> pdb=" O LEU A 932 " (cutoff:3.500A) Processing helix chain 'A' and resid 943 through 951 removed outlier: 4.100A pdb=" N GLU A 947 " --> pdb=" O ASP A 943 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ASP A 948 " --> pdb=" O GLU A 944 " (cutoff:3.500A) removed outlier: 5.554A pdb=" N LYS A 951 " --> pdb=" O GLU A 947 " (cutoff:3.500A) Processing helix chain 'A' and resid 979 through 1004 removed outlier: 3.871A pdb=" N THR A 983 " --> pdb=" O PRO A 979 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N LEU A 984 " --> pdb=" O ALA A 980 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N ASP A 986 " --> pdb=" O THR A 982 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N ARG A 987 " --> pdb=" O THR A 983 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLU A 990 " --> pdb=" O ASP A 986 " (cutoff:3.500A) removed outlier: 4.551A pdb=" N VAL A 995 " --> pdb=" O ASN A 991 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N TRP A 996 " --> pdb=" O GLY A 992 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N GLY A1004 " --> pdb=" O ARG A1000 " (cutoff:3.500A) Processing helix chain 'A' and resid 1028 through 1050 removed outlier: 3.974A pdb=" N LYS A1032 " --> pdb=" O ASP A1028 " (cutoff:3.500A) removed outlier: 4.590A pdb=" N ARG A1033 " --> pdb=" O GLU A1029 " (cutoff:3.500A) removed outlier: 4.950A pdb=" N SER A1034 " --> pdb=" O ALA A1030 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N SER A1038 " --> pdb=" O SER A1034 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N GLN A1041 " --> pdb=" O ASP A1037 " (cutoff:3.500A) removed outlier: 5.304A pdb=" N ALA A1042 " --> pdb=" O SER A1038 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N VAL A1043 " --> pdb=" O LEU A1039 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N ARG A1044 " --> pdb=" O CYS A1040 " (cutoff:3.500A) removed outlier: 4.572A pdb=" N THR A1045 " --> pdb=" O GLN A1041 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N GLY A1050 " --> pdb=" O LEU A1046 " (cutoff:3.500A) Processing helix chain 'A' and resid 1207 through 1212 removed outlier: 3.943A pdb=" N LEU A1211 " --> pdb=" O ASP A1207 " (cutoff:3.500A) removed outlier: 5.510A pdb=" N ARG A1212 " --> pdb=" O VAL A1208 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1207 through 1212' Processing helix chain 'A' and resid 1213 through 1218 removed outlier: 4.422A pdb=" N CYS A1217 " --> pdb=" O PHE A1213 " (cutoff:3.500A) removed outlier: 4.473A pdb=" N GLY A1218 " --> pdb=" O PHE A1214 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1213 through 1218' Processing helix chain 'A' and resid 1423 through 1431 removed outlier: 4.172A pdb=" N ILE A1427 " --> pdb=" O ASP A1423 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N LEU A1428 " --> pdb=" O PRO A1424 " (cutoff:3.500A) removed outlier: 4.794A pdb=" N ASN A1429 " --> pdb=" O GLU A1425 " (cutoff:3.500A) removed outlier: 4.274A pdb=" N THR A1430 " --> pdb=" O ILE A1426 " (cutoff:3.500A) removed outlier: 5.920A pdb=" N THR A1431 " --> pdb=" O ILE A1427 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1423 through 1431' Processing helix chain 'A' and resid 1444 through 1449 removed outlier: 4.429A pdb=" N VAL A1448 " --> pdb=" O GLU A1444 " (cutoff:3.500A) removed outlier: 6.110A pdb=" N TRP A1449 " --> pdb=" O PRO A1445 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1444 through 1449' Processing helix chain 'A' and resid 1465 through 1470 removed outlier: 4.076A pdb=" N VAL A1469 " --> pdb=" O ASP A1465 " (cutoff:3.500A) removed outlier: 6.862A pdb=" N ARG A1470 " --> pdb=" O LEU A1466 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1465 through 1470' Processing helix chain 'A' and resid 1496 through 1501 removed outlier: 5.047A pdb=" N PHE A1500 " --> pdb=" O TRP A1496 " (cutoff:3.500A) removed outlier: 4.324A pdb=" N VAL A1501 " --> pdb=" O GLY A1497 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1496 through 1501' Processing helix chain 'A' and resid 1574 through 1581 removed outlier: 4.356A pdb=" N ALA A1578 " --> pdb=" O PRO A1574 " (cutoff:3.500A) removed outlier: 4.339A pdb=" N PHE A1580 " --> pdb=" O SER A1576 " (cutoff:3.500A) removed outlier: 5.717A pdb=" N LEU A1581 " --> pdb=" O ALA A1577 " (cutoff:3.500A) Processing helix chain 'A' and resid 1649 through 1657 removed outlier: 4.184A pdb=" N LEU A1653 " --> pdb=" O ASP A1649 " (cutoff:3.500A) removed outlier: 5.144A pdb=" N SER A1654 " --> pdb=" O ILE A1650 " (cutoff:3.500A) removed outlier: 6.201A pdb=" N GLU A1655 " --> pdb=" O LEU A1651 " (cutoff:3.500A) removed outlier: 4.455A pdb=" N ARG A1656 " --> pdb=" O GLU A1652 " (cutoff:3.500A) removed outlier: 5.082A pdb=" N LEU A1657 " --> pdb=" O LEU A1653 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1649 through 1657' Processing helix chain 'A' and resid 1658 through 1675 removed outlier: 3.864A pdb=" N PHE A1662 " --> pdb=" O ASP A1658 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N HIS A1665 " --> pdb=" O ARG A1661 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N LEU A1667 " --> pdb=" O HIS A1663 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N ARG A1668 " --> pdb=" O SER A1664 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N LEU A1669 " --> pdb=" O HIS A1665 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N CYS A1674 " --> pdb=" O TYR A1670 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N ALA A1675 " --> pdb=" O ARG A1671 " (cutoff:3.500A) Processing helix chain 'A' and resid 1678 through 1689 removed outlier: 4.481A pdb=" N ALA A1682 " --> pdb=" O ASN A1678 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N HIS A1683 " --> pdb=" O ASN A1679 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N ALA A1684 " --> pdb=" O ARG A1680 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N CYS A1686 " --> pdb=" O ALA A1682 " (cutoff:3.500A) removed outlier: 3.958A pdb=" N SER A1687 " --> pdb=" O HIS A1683 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N HIS A1688 " --> pdb=" O ALA A1684 " (cutoff:3.500A) Processing helix chain 'A' and resid 1690 through 1700 removed outlier: 3.750A pdb=" N ALA A1697 " --> pdb=" O GLN A1693 " (cutoff:3.500A) removed outlier: 4.033A pdb=" N GLU A1699 " --> pdb=" O LEU A1695 " (cutoff:3.500A) Processing helix chain 'A' and resid 1704 through 1719 removed outlier: 3.839A pdb=" N TYR A1712 " --> pdb=" O ARG A1708 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N HIS A1719 " --> pdb=" O LEU A1715 " (cutoff:3.500A) Processing helix chain 'A' and resid 1720 through 1731 removed outlier: 4.082A pdb=" N CYS A1724 " --> pdb=" O LEU A1720 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N ARG A1725 " --> pdb=" O GLU A1721 " (cutoff:3.500A) removed outlier: 4.859A pdb=" N SER A1726 " --> pdb=" O SER A1722 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N ARG A1727 " --> pdb=" O ALA A1723 " (cutoff:3.500A) removed outlier: 4.188A pdb=" N MET A1730 " --> pdb=" O SER A1726 " (cutoff:3.500A) Processing helix chain 'A' and resid 1739 through 1744 removed outlier: 4.459A pdb=" N ARG A1743 " --> pdb=" O THR A1739 " (cutoff:3.500A) removed outlier: 5.170A pdb=" N ALA A1744 " --> pdb=" O PRO A1740 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1739 through 1744' Processing helix chain 'A' and resid 1803 through 1825 removed outlier: 4.068A pdb=" N LEU A1807 " --> pdb=" O PRO A1803 " (cutoff:3.500A) removed outlier: 4.846A pdb=" N ASP A1809 " --> pdb=" O GLU A1805 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N LYS A1810 " --> pdb=" O ALA A1806 " (cutoff:3.500A) removed outlier: 4.407A pdb=" N LEU A1812 " --> pdb=" O ARG A1808 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N MET A1814 " --> pdb=" O LYS A1810 " (cutoff:3.500A) removed outlier: 5.202A pdb=" N LEU A1815 " --> pdb=" O ALA A1811 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N ARG A1820 " --> pdb=" O GLY A1816 " (cutoff:3.500A) Processing helix chain 'A' and resid 1833 through 1852 Proline residue: A1840 - end of helix removed outlier: 3.782A pdb=" N THR A1847 " --> pdb=" O LYS A1843 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N LEU A1848 " --> pdb=" O LEU A1844 " (cutoff:3.500A) Processing helix chain 'A' and resid 1855 through 1867 removed outlier: 4.399A pdb=" N VAL A1859 " --> pdb=" O GLY A1855 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N LYS A1860 " --> pdb=" O ASP A1856 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N GLN A1861 " --> pdb=" O GLU A1857 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N ILE A1862 " --> pdb=" O ASP A1858 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLU A1867 " --> pdb=" O LEU A1863 " (cutoff:3.500A) Processing helix chain 'A' and resid 1932 through 1984 removed outlier: 4.263A pdb=" N LYS A1936 " --> pdb=" O PRO A1932 " (cutoff:3.500A) removed outlier: 5.376A pdb=" N LEU A1937 " --> pdb=" O GLU A1933 " (cutoff:3.500A) removed outlier: 6.013A pdb=" N GLN A1938 " --> pdb=" O SER A1934 " (cutoff:3.500A) removed outlier: 4.415A pdb=" N MET A1939 " --> pdb=" O VAL A1935 " (cutoff:3.500A) removed outlier: 3.540A pdb=" N CYS A1940 " --> pdb=" O LYS A1936 " (cutoff:3.500A) removed outlier: 3.714A pdb=" N ARG A1954 " --> pdb=" O GLU A1950 " (cutoff:3.500A) removed outlier: 3.897A pdb=" N VAL A1966 " --> pdb=" O ALA A1962 " (cutoff:3.500A) removed outlier: 5.297A pdb=" N ALA A1971 " --> pdb=" O ASP A1967 " (cutoff:3.500A) removed outlier: 4.336A pdb=" N ASN A1972 " --> pdb=" O LYS A1968 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N ARG A1974 " --> pdb=" O GLN A1970 " (cutoff:3.500A) removed outlier: 4.382A pdb=" N ARG A1982 " --> pdb=" O ALA A1978 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N ALA A1983 " --> pdb=" O LEU A1979 " (cutoff:3.500A) removed outlier: 5.895A pdb=" N PHE A1984 " --> pdb=" O LEU A1980 " (cutoff:3.500A) Processing helix chain 'A' and resid 1987 through 1998 removed outlier: 4.471A pdb=" N THR A1991 " --> pdb=" O SER A1987 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N ALA A1992 " --> pdb=" O ALA A1988 " (cutoff:3.500A) removed outlier: 4.220A pdb=" N ARG A1996 " --> pdb=" O ALA A1992 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N GLU A1997 " --> pdb=" O ARG A1993 " (cutoff:3.500A) Processing helix chain 'A' and resid 2001 through 2011 removed outlier: 4.280A pdb=" N ILE A2006 " --> pdb=" O PRO A2002 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N ASN A2007 " --> pdb=" O GLN A2003 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N LEU A2010 " --> pdb=" O ILE A2006 " (cutoff:3.500A) removed outlier: 4.536A pdb=" N HIS A2011 " --> pdb=" O ASN A2007 " (cutoff:3.500A) Processing helix chain 'A' and resid 2024 through 2043 removed outlier: 4.817A pdb=" N ARG A2028 " --> pdb=" O PRO A2024 " (cutoff:3.500A) removed outlier: 6.389A pdb=" N GLN A2029 " --> pdb=" O GLU A2025 " (cutoff:3.500A) removed outlier: 6.430A pdb=" N ASP A2030 " --> pdb=" O ASP A2026 " (cutoff:3.500A) removed outlier: 5.992A pdb=" N LEU A2031 " --> pdb=" O ILE A2027 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N GLN A2032 " --> pdb=" O ARG A2028 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N GLN A2036 " --> pdb=" O GLN A2032 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N ASP A2037 " --> pdb=" O ASP A2033 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N GLY A2043 " --> pdb=" O LEU A2039 " (cutoff:3.500A) Processing helix chain 'A' and resid 2093 through 2109 removed outlier: 3.624A pdb=" N VAL A2098 " --> pdb=" O LEU A2094 " (cutoff:3.500A) removed outlier: 4.352A pdb=" N SER A2099 " --> pdb=" O GLN A2095 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N HIS A2100 " --> pdb=" O GLU A2096 " (cutoff:3.500A) removed outlier: 3.946A pdb=" N MET A2101 " --> pdb=" O LEU A2097 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N VAL A2102 " --> pdb=" O VAL A2098 " (cutoff:3.500A) removed outlier: 4.529A pdb=" N VAL A2103 " --> pdb=" O SER A2099 " (cutoff:3.500A) removed outlier: 4.083A pdb=" N ARG A2104 " --> pdb=" O HIS A2100 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLU A2108 " --> pdb=" O ARG A2104 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N ASP A2109 " --> pdb=" O TRP A2105 " (cutoff:3.500A) Processing helix chain 'A' and resid 2113 through 2130 removed outlier: 4.255A pdb=" N VAL A2117 " --> pdb=" O SER A2113 " (cutoff:3.500A) removed outlier: 4.194A pdb=" N ARG A2118 " --> pdb=" O PRO A2114 " (cutoff:3.500A) removed outlier: 4.168A pdb=" N PHE A2121 " --> pdb=" O VAL A2117 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N HIS A2125 " --> pdb=" O PHE A2121 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N ARG A2126 " --> pdb=" O SER A2122 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N GLN A2127 " --> pdb=" O LEU A2123 " (cutoff:3.500A) Processing helix chain 'A' and resid 2131 through 2142 Proline residue: A2139 - end of helix removed outlier: 5.551A pdb=" N TYR A2142 " --> pdb=" O LEU A2138 " (cutoff:3.500A) Processing helix chain 'A' and resid 2148 through 2169 removed outlier: 4.644A pdb=" N SER A2154 " --> pdb=" O GLU A2150 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N LEU A2155 " --> pdb=" O ASP A2151 " (cutoff:3.500A) removed outlier: 4.989A pdb=" N ILE A2167 " --> pdb=" O ARG A2163 " (cutoff:3.500A) removed outlier: 4.621A pdb=" N VAL A2168 " --> pdb=" O SER A2164 " (cutoff:3.500A) removed outlier: 5.066A pdb=" N GLN A2169 " --> pdb=" O LEU A2165 " (cutoff:3.500A) Processing helix chain 'A' and resid 2173 through 2189 removed outlier: 5.104A pdb=" N LEU A2177 " --> pdb=" O GLN A2173 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N MET A2178 " --> pdb=" O GLU A2174 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N ILE A2179 " --> pdb=" O GLU A2175 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N SER A2181 " --> pdb=" O LEU A2177 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N MET A2186 " --> pdb=" O ILE A2182 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N ASN A2187 " --> pdb=" O GLY A2183 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N ASN A2188 " --> pdb=" O ASN A2184 " (cutoff:3.500A) removed outlier: 5.096A pdb=" N LYS A2189 " --> pdb=" O ILE A2185 " (cutoff:3.500A) Processing helix chain 'A' and resid 2195 through 2202 removed outlier: 4.419A pdb=" N ARG A2199 " --> pdb=" O PRO A2195 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N ALA A2200 " --> pdb=" O ASN A2196 " (cutoff:3.500A) Processing helix chain 'A' and resid 2203 through 2216 removed outlier: 4.780A pdb=" N MET A2208 " --> pdb=" O HIS A2204 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N VAL A2210 " --> pdb=" O THR A2206 " (cutoff:3.500A) removed outlier: 3.976A pdb=" N MET A2211 " --> pdb=" O VAL A2207 " (cutoff:3.500A) removed outlier: 3.672A pdb=" N ASN A2213 " --> pdb=" O GLU A2209 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N VAL A2214 " --> pdb=" O VAL A2210 " (cutoff:3.500A) Processing helix chain 'A' and resid 2225 through 2244 removed outlier: 4.157A pdb=" N VAL A2229 " --> pdb=" O PHE A2225 " (cutoff:3.500A) removed outlier: 4.559A pdb=" N THR A2230 " --> pdb=" O PRO A2226 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N SER A2231 " --> pdb=" O LYS A2227 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N LEU A2236 " --> pdb=" O CYS A2232 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N TYR A2238 " --> pdb=" O ARG A2234 " (cutoff:3.500A) removed outlier: 4.284A pdb=" N ARG A2241 " --> pdb=" O CYS A2237 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N ILE A2242 " --> pdb=" O TYR A2238 " (cutoff:3.500A) removed outlier: 5.023A pdb=" N SER A2243 " --> pdb=" O PHE A2239 " (cutoff:3.500A) removed outlier: 4.886A pdb=" N ARG A2244 " --> pdb=" O CYS A2240 " (cutoff:3.500A) Processing helix chain 'A' and resid 2245 through 2255 removed outlier: 4.460A pdb=" N SER A2249 " --> pdb=" O GLN A2245 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N MET A2250 " --> pdb=" O ASN A2246 " (cutoff:3.500A) removed outlier: 4.614A pdb=" N ASP A2252 " --> pdb=" O ARG A2248 " (cutoff:3.500A) removed outlier: 5.200A pdb=" N HIS A2253 " --> pdb=" O SER A2249 " (cutoff:3.500A) removed outlier: 3.884A pdb=" N LEU A2254 " --> pdb=" O MET A2250 " (cutoff:3.500A) removed outlier: 5.037A pdb=" N SER A2255 " --> pdb=" O PHE A2251 " (cutoff:3.500A) Processing helix chain 'A' and resid 2256 through 2262 removed outlier: 4.038A pdb=" N ASN A2260 " --> pdb=" O TYR A2256 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N SER A2261 " --> pdb=" O LEU A2257 " (cutoff:3.500A) removed outlier: 5.233A pdb=" N GLY A2262 " --> pdb=" O LEU A2258 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 2256 through 2262' Processing helix chain 'A' and resid 2271 through 2282 removed outlier: 4.709A pdb=" N VAL A2275 " --> pdb=" O THR A2271 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N ALA A2276 " --> pdb=" O PRO A2272 " (cutoff:3.500A) removed outlier: 3.926A pdb=" N VAL A2280 " --> pdb=" O ALA A2276 " (cutoff:3.500A) removed outlier: 4.071A pdb=" N ILE A2281 " --> pdb=" O ALA A2277 " (cutoff:3.500A) removed outlier: 6.514A pdb=" N ASP A2282 " --> pdb=" O ALA A2278 " (cutoff:3.500A) Processing helix chain 'A' and resid 2283 through 2290 removed outlier: 3.708A pdb=" N ALA A2287 " --> pdb=" O ASN A2283 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N ALA A2289 " --> pdb=" O GLU A2285 " (cutoff:3.500A) removed outlier: 5.113A pdb=" N LEU A2290 " --> pdb=" O LEU A2286 " (cutoff:3.500A) Processing helix chain 'A' and resid 2291 through 2308 removed outlier: 4.509A pdb=" N LEU A2295 " --> pdb=" O GLN A2291 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N GLU A2296 " --> pdb=" O GLU A2292 " (cutoff:3.500A) removed outlier: 5.054A pdb=" N LYS A2297 " --> pdb=" O GLN A2293 " (cutoff:3.500A) removed outlier: 5.340A pdb=" N VAL A2298 " --> pdb=" O ASP A2294 " (cutoff:3.500A) removed outlier: 3.773A pdb=" N VAL A2299 " --> pdb=" O LEU A2295 " (cutoff:3.500A) removed outlier: 4.384A pdb=" N LEU A2307 " --> pdb=" O ALA A2303 " (cutoff:3.500A) Processing helix chain 'A' and resid 2310 through 2317 removed outlier: 3.745A pdb=" N LEU A2314 " --> pdb=" O CYS A2310 " (cutoff:3.500A) removed outlier: 3.955A pdb=" N ALA A2315 " --> pdb=" O PRO A2311 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N LYS A2316 " --> pdb=" O MET A2312 " (cutoff:3.500A) Processing helix chain 'A' and resid 2324 through 2340 removed outlier: 3.864A pdb=" N GLY A2328 " --> pdb=" O ASN A2324 " (cutoff:3.500A) removed outlier: 4.694A pdb=" N ARG A2330 " --> pdb=" O CYS A2326 " (cutoff:3.500A) removed outlier: 5.197A pdb=" N TYR A2331 " --> pdb=" O GLY A2327 " (cutoff:3.500A) removed outlier: 4.256A pdb=" N LEU A2332 " --> pdb=" O GLY A2328 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N ASP A2333 " --> pdb=" O GLU A2329 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N PHE A2334 " --> pdb=" O ARG A2330 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N LEU A2335 " --> pdb=" O TYR A2331 " (cutoff:3.500A) Processing helix chain 'A' and resid 2346 through 2361 removed outlier: 4.241A pdb=" N ALA A2350 " --> pdb=" O VAL A2346 " (cutoff:3.500A) removed outlier: 4.566A pdb=" N ASN A2351 " --> pdb=" O GLU A2347 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N VAL A2354 " --> pdb=" O ALA A2350 " (cutoff:3.500A) removed outlier: 4.338A pdb=" N ARG A2355 " --> pdb=" O ASN A2351 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ARG A2359 " --> pdb=" O ARG A2355 " (cutoff:3.500A) removed outlier: 4.764A pdb=" N LYS A2360 " --> pdb=" O LEU A2356 " (cutoff:3.500A) Proline residue: A2361 - end of helix Processing helix chain 'A' and resid 2375 through 2390 removed outlier: 3.976A pdb=" N ALA A2379 " --> pdb=" O GLY A2375 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N ILE A2380 " --> pdb=" O LEU A2376 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N GLU A2382 " --> pdb=" O ALA A2378 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ARG A2385 " --> pdb=" O GLU A2381 " (cutoff:3.500A) Proline residue: A2390 - end of helix Processing helix chain 'A' and resid 2417 through 2437 removed outlier: 3.893A pdb=" N ILE A2422 " --> pdb=" O LEU A2418 " (cutoff:3.500A) removed outlier: 5.011A pdb=" N MET A2423 " --> pdb=" O GLY A2419 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N TYR A2426 " --> pdb=" O ILE A2422 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N ASP A2431 " --> pdb=" O ALA A2427 " (cutoff:3.500A) removed outlier: 4.336A pdb=" N LEU A2432 " --> pdb=" O ALA A2428 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N LEU A2433 " --> pdb=" O LEU A2429 " (cutoff:3.500A) removed outlier: 4.297A pdb=" N ALA A2437 " --> pdb=" O LEU A2433 " (cutoff:3.500A) Processing helix chain 'A' and resid 2439 through 2446 removed outlier: 3.708A pdb=" N ILE A2443 " --> pdb=" O GLU A2439 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N GLN A2444 " --> pdb=" O MET A2440 " (cutoff:3.500A) removed outlier: 4.226A pdb=" N ALA A2445 " --> pdb=" O HIS A2441 " (cutoff:3.500A) removed outlier: 5.633A pdb=" N GLY A2446 " --> pdb=" O LEU A2442 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 2439 through 2446' Processing helix chain 'A' and resid 2447 through 2462 removed outlier: 4.619A pdb=" N LEU A2451 " --> pdb=" O LYS A2447 " (cutoff:3.500A) removed outlier: 5.207A pdb=" N ARG A2452 " --> pdb=" O GLY A2448 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N ILE A2453 " --> pdb=" O GLU A2449 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N ARG A2454 " --> pdb=" O ALA A2450 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N VAL A2461 " --> pdb=" O LEU A2457 " (cutoff:3.500A) Proline residue: A2462 - end of helix Processing helix chain 'A' and resid 2463 through 2472 removed outlier: 4.018A pdb=" N VAL A2467 " --> pdb=" O LEU A2463 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N GLY A2468 " --> pdb=" O ASP A2464 " (cutoff:3.500A) removed outlier: 4.142A pdb=" N ILE A2469 " --> pdb=" O ASP A2465 " (cutoff:3.500A) Processing helix chain 'A' and resid 2495 through 2509 removed outlier: 4.348A pdb=" N LYS A2499 " --> pdb=" O VAL A2495 " (cutoff:3.500A) removed outlier: 4.526A pdb=" N SER A2501 " --> pdb=" O ASP A2497 " (cutoff:3.500A) removed outlier: 4.081A pdb=" N MET A2502 " --> pdb=" O HIS A2498 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N VAL A2503 " --> pdb=" O LYS A2499 " (cutoff:3.500A) removed outlier: 4.510A pdb=" N LEU A2504 " --> pdb=" O ALA A2500 " (cutoff:3.500A) removed outlier: 4.034A pdb=" N ARG A2508 " --> pdb=" O LEU A2504 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N VAL A2509 " --> pdb=" O PHE A2505 " (cutoff:3.500A) Processing helix chain 'A' and resid 2514 through 2537 removed outlier: 4.040A pdb=" N LEU A2518 " --> pdb=" O ASN A2514 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N HIS A2520 " --> pdb=" O ASP A2516 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N LEU A2522 " --> pdb=" O LEU A2518 " (cutoff:3.500A) removed outlier: 3.893A pdb=" N ASP A2523 " --> pdb=" O LEU A2519 " (cutoff:3.500A) removed outlier: 4.603A pdb=" N VAL A2524 " --> pdb=" O HIS A2520 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N GLY A2525 " --> pdb=" O VAL A2521 " (cutoff:3.500A) removed outlier: 4.794A pdb=" N PHE A2526 " --> pdb=" O LEU A2522 " (cutoff:3.500A) removed outlier: 5.435A pdb=" N LEU A2527 " --> pdb=" O ASP A2523 " (cutoff:3.500A) Proline residue: A2528 - end of helix removed outlier: 3.504A pdb=" N ALA A2532 " --> pdb=" O PRO A2528 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N LEU A2536 " --> pdb=" O ALA A2532 " (cutoff:3.500A) Processing helix chain 'A' and resid 2544 through 2566 removed outlier: 3.781A pdb=" N LEU A2548 " --> pdb=" O THR A2544 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N TYR A2553 " --> pdb=" O ALA A2549 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N VAL A2558 " --> pdb=" O LEU A2554 " (cutoff:3.500A) removed outlier: 6.491A pdb=" N LEU A2559 " --> pdb=" O CYS A2555 " (cutoff:3.500A) Proline residue: A2560 - end of helix removed outlier: 3.835A pdb=" N LYS A2564 " --> pdb=" O PRO A2560 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N CYS A2565 " --> pdb=" O LEU A2561 " (cutoff:3.500A) Processing helix chain 'A' and resid 2575 through 2591 removed outlier: 5.098A pdb=" N VAL A2579 " --> pdb=" O ARG A2575 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N ASP A2580 " --> pdb=" O ALA A2576 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N TYR A2587 " --> pdb=" O LEU A2583 " (cutoff:3.500A) removed outlier: 4.865A pdb=" N ARG A2591 " --> pdb=" O TYR A2587 " (cutoff:3.500A) Processing helix chain 'A' and resid 2598 through 2614 removed outlier: 5.122A pdb=" N VAL A2602 " --> pdb=" O ALA A2598 " (cutoff:3.500A) removed outlier: 4.678A pdb=" N ILE A2603 " --> pdb=" O GLN A2599 " (cutoff:3.500A) removed outlier: 4.142A pdb=" N MET A2608 " --> pdb=" O GLU A2604 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N ALA A2609 " --> pdb=" O ASP A2605 " (cutoff:3.500A) removed outlier: 4.747A pdb=" N TYR A2613 " --> pdb=" O ALA A2609 " (cutoff:3.500A) removed outlier: 5.051A pdb=" N ILE A2614 " --> pdb=" O LEU A2610 " (cutoff:3.500A) Processing helix chain 'A' and resid 2618 through 2634 removed outlier: 4.874A pdb=" N LEU A2622 " --> pdb=" O MET A2618 " (cutoff:3.500A) removed outlier: 4.667A pdb=" N ARG A2625 " --> pdb=" O HIS A2621 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N VAL A2627 " --> pdb=" O LEU A2623 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N PHE A2628 " --> pdb=" O ARG A2624 " (cutoff:3.500A) removed outlier: 4.369A pdb=" N ASP A2629 " --> pdb=" O ARG A2625 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N VAL A2630 " --> pdb=" O LEU A2626 " (cutoff:3.500A) Proline residue: A2631 - end of helix removed outlier: 4.886A pdb=" N ASN A2634 " --> pdb=" O VAL A2630 " (cutoff:3.500A) Processing helix chain 'A' and resid 2748 through 2774 removed outlier: 3.907A pdb=" N ASP A2752 " --> pdb=" O PRO A2748 " (cutoff:3.500A) removed outlier: 4.148A pdb=" N SER A2753 " --> pdb=" O GLU A2749 " (cutoff:3.500A) removed outlier: 4.033A pdb=" N ASN A2756 " --> pdb=" O ASP A2752 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N GLN A2772 " --> pdb=" O PHE A2768 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N ASN A2773 " --> pdb=" O ASP A2769 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N ASN A2774 " --> pdb=" O LYS A2770 " (cutoff:3.500A) Processing helix chain 'A' and resid 2798 through 2803 removed outlier: 3.594A pdb=" N GLU A2803 " --> pdb=" O GLU A2799 " (cutoff:3.500A) Processing helix chain 'A' and resid 2805 through 2820 removed outlier: 3.717A pdb=" N ILE A2809 " --> pdb=" O TYR A2805 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N SER A2812 " --> pdb=" O PRO A2808 " (cutoff:3.500A) removed outlier: 4.626A pdb=" N LEU A2813 " --> pdb=" O ILE A2809 " (cutoff:3.500A) Processing helix chain 'A' and resid 2868 through 2896 removed outlier: 3.999A pdb=" N ALA A2873 " --> pdb=" O ARG A2869 " (cutoff:3.500A) Processing helix chain 'A' and resid 2913 through 2932 removed outlier: 4.062A pdb=" N ARG A2918 " --> pdb=" O LYS A2914 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N ARG A2920 " --> pdb=" O LYS A2916 " (cutoff:3.500A) removed outlier: 5.047A pdb=" N GLU A2921 " --> pdb=" O ALA A2917 " (cutoff:3.500A) removed outlier: 4.802A pdb=" N LYS A2922 " --> pdb=" O ARG A2918 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N ALA A2923 " --> pdb=" O ASP A2919 " (cutoff:3.500A) removed outlier: 4.051A pdb=" N MET A2932 " --> pdb=" O LYS A2928 " (cutoff:3.500A) Processing helix chain 'A' and resid 3625 through 3638 removed outlier: 4.574A pdb=" N ARG A3629 " --> pdb=" O SER A3625 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N ARG A3630 " --> pdb=" O LYS A3626 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N VAL A3632 " --> pdb=" O ARG A3628 " (cutoff:3.500A) removed outlier: 4.609A pdb=" N VAL A3633 " --> pdb=" O ARG A3629 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ARG A3637 " --> pdb=" O VAL A3633 " (cutoff:3.500A) Processing helix chain 'A' and resid 3640 through 3645 removed outlier: 3.927A pdb=" N LEU A3644 " --> pdb=" O PRO A3640 " (cutoff:3.500A) Proline residue: A3645 - end of helix No H-bonds generated for 'chain 'A' and resid 3640 through 3645' Processing helix chain 'A' and resid 3646 through 3665 removed outlier: 3.983A pdb=" N ASN A3651 " --> pdb=" O HIS A3647 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N LEU A3654 " --> pdb=" O CYS A3650 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLU A3655 " --> pdb=" O ASN A3651 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N SER A3656 " --> pdb=" O MET A3652 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N ALA A3659 " --> pdb=" O GLU A3655 " (cutoff:3.500A) removed outlier: 3.916A pdb=" N ILE A3662 " --> pdb=" O LYS A3658 " (cutoff:3.500A) removed outlier: 5.142A pdb=" N LEU A3663 " --> pdb=" O ALA A3659 " (cutoff:3.500A) removed outlier: 4.791A pdb=" N THR A3664 " --> pdb=" O ALA A3660 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N GLU A3665 " --> pdb=" O TRP A3661 " (cutoff:3.500A) Processing helix chain 'A' and resid 3668 through 3681 removed outlier: 4.499A pdb=" N ARG A3672 " --> pdb=" O SER A3668 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N MET A3673 " --> pdb=" O PHE A3669 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N ILE A3674 " --> pdb=" O GLU A3670 " (cutoff:3.500A) removed outlier: 3.919A pdb=" N ASP A3675 " --> pdb=" O ASP A3671 " (cutoff:3.500A) removed outlier: 4.188A pdb=" N ASP A3676 " --> pdb=" O ARG A3672 " (cutoff:3.500A) removed outlier: 3.645A pdb=" N LEU A3677 " --> pdb=" O MET A3673 " (cutoff:3.500A) removed outlier: 4.880A pdb=" N GLY A3681 " --> pdb=" O LEU A3677 " (cutoff:3.500A) Processing helix chain 'A' and resid 3696 through 3711 removed outlier: 3.572A pdb=" N LEU A3701 " --> pdb=" O PRO A3697 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ARG A3707 " --> pdb=" O LEU A3703 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N ALA A3709 " --> pdb=" O PHE A3705 " (cutoff:3.500A) removed outlier: 4.740A pdb=" N LEU A3710 " --> pdb=" O SER A3706 " (cutoff:3.500A) removed outlier: 4.881A pdb=" N THR A3711 " --> pdb=" O ARG A3707 " (cutoff:3.500A) Processing helix chain 'A' and resid 3719 through 3735 removed outlier: 4.906A pdb=" N MET A3723 " --> pdb=" O ASP A3719 " (cutoff:3.500A) removed outlier: 4.495A pdb=" N ALA A3724 " --> pdb=" O TYR A3720 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N ASP A3727 " --> pdb=" O MET A3723 " (cutoff:3.500A) removed outlier: 5.006A pdb=" N CYS A3733 " --> pdb=" O MET A3729 " (cutoff:3.500A) removed outlier: 4.292A pdb=" N HIS A3734 " --> pdb=" O ALA A3730 " (cutoff:3.500A) removed outlier: 4.893A pdb=" N LEU A3735 " --> pdb=" O LYS A3731 " (cutoff:3.500A) Processing helix chain 'A' and resid 3752 through 3772 removed outlier: 3.984A pdb=" N LYS A3756 " --> pdb=" O SER A3752 " (cutoff:3.500A) removed outlier: 4.137A pdb=" N LEU A3770 " --> pdb=" O GLN A3766 " (cutoff:3.500A) removed outlier: 4.000A pdb=" N THR A3772 " --> pdb=" O SER A3768 " (cutoff:3.500A) Processing helix chain 'A' and resid 3774 through 3787 removed outlier: 4.033A pdb=" N VAL A3779 " --> pdb=" O ALA A3775 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N LEU A3780 " --> pdb=" O ALA A3776 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N GLN A3781 " --> pdb=" O GLU A3777 " (cutoff:3.500A) removed outlier: 4.134A pdb=" N MET A3782 " --> pdb=" O MET A3778 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N ILE A3783 " --> pdb=" O VAL A3779 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N CYS A3786 " --> pdb=" O MET A3782 " (cutoff:3.500A) removed outlier: 3.766A pdb=" N LYS A3787 " --> pdb=" O ILE A3783 " (cutoff:3.500A) Processing helix chain 'A' and resid 3791 through 3806 removed outlier: 4.045A pdb=" N SER A3795 " --> pdb=" O GLY A3791 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N SER A3796 " --> pdb=" O ALA A3792 " (cutoff:3.500A) removed outlier: 4.566A pdb=" N LYS A3799 " --> pdb=" O SER A3795 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N GLY A3801 " --> pdb=" O THR A3797 " (cutoff:3.500A) Processing helix chain 'A' and resid 3809 through 3824 removed outlier: 4.285A pdb=" N GLN A3813 " --> pdb=" O ASN A3809 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N MET A3816 " --> pdb=" O VAL A3812 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N ASP A3818 " --> pdb=" O GLN A3814 " (cutoff:3.500A) removed outlier: 4.112A pdb=" N TYR A3819 " --> pdb=" O LYS A3815 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N LYS A3823 " --> pdb=" O TYR A3819 " (cutoff:3.500A) Processing helix chain 'A' and resid 3826 through 3839 removed outlier: 6.502A pdb=" N GLN A3830 " --> pdb=" O VAL A3826 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N MET A3836 " --> pdb=" O ILE A3832 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N GLN A3837 " --> pdb=" O GLN A3833 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N THR A3838 " --> pdb=" O ALA A3834 " (cutoff:3.500A) removed outlier: 5.105A pdb=" N CYS A3839 " --> pdb=" O LEU A3835 " (cutoff:3.500A) Processing helix chain 'A' and resid 3843 through 3857 removed outlier: 4.147A pdb=" N PHE A3847 " --> pdb=" O ASP A3843 " (cutoff:3.500A) removed outlier: 5.365A pdb=" N GLU A3848 " --> pdb=" O LEU A3844 " (cutoff:3.500A) removed outlier: 4.555A pdb=" N ARG A3849 " --> pdb=" O ASN A3845 " (cutoff:3.500A) removed outlier: 4.797A pdb=" N GLN A3850 " --> pdb=" O ALA A3846 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N LYS A3852 " --> pdb=" O GLU A3848 " (cutoff:3.500A) removed outlier: 4.127A pdb=" N GLY A3855 " --> pdb=" O ASN A3851 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N LEU A3856 " --> pdb=" O LYS A3852 " (cutoff:3.500A) removed outlier: 5.470A pdb=" N GLY A3857 " --> pdb=" O ALA A3853 " (cutoff:3.500A) Processing helix chain 'A' and resid 3866 through 3871 Processing helix chain 'A' and resid 3877 through 3893 removed outlier: 3.644A pdb=" N THR A3881 " --> pdb=" O ASP A3877 " (cutoff:3.500A) removed outlier: 3.974A pdb=" N CYS A3892 " --> pdb=" O LEU A3888 " (cutoff:3.500A) Processing helix chain 'A' and resid 3896 through 3905 removed outlier: 3.838A pdb=" N GLN A3900 " --> pdb=" O ASN A3896 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N ARG A3904 " --> pdb=" O GLN A3900 " (cutoff:3.500A) Processing helix chain 'A' and resid 3914 through 3938 removed outlier: 3.833A pdb=" N CYS A3918 " --> pdb=" O ASN A3914 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ASP A3932 " --> pdb=" O GLU A3928 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N TYR A3937 " --> pdb=" O PHE A3933 " (cutoff:3.500A) Processing helix chain 'A' and resid 3945 through 3970 removed outlier: 3.979A pdb=" N VAL A3957 " --> pdb=" O LYS A3953 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N GLN A3960 " --> pdb=" O SER A3956 " (cutoff:3.500A) removed outlier: 4.364A pdb=" N ASN A3963 " --> pdb=" O LYS A3959 " (cutoff:3.500A) removed outlier: 4.203A pdb=" N LEU A3965 " --> pdb=" O VAL A3961 " (cutoff:3.500A) removed outlier: 4.618A pdb=" N THR A3966 " --> pdb=" O PHE A3962 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N TYR A3968 " --> pdb=" O SER A3964 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N ILE A3969 " --> pdb=" O LEU A3965 " (cutoff:3.500A) Processing helix chain 'A' and resid 3974 through 3983 removed outlier: 3.696A pdb=" N GLN A3978 " --> pdb=" O THR A3974 " (cutoff:3.500A) removed outlier: 4.249A pdb=" N SER A3979 " --> pdb=" O GLY A3975 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N ALA A3981 " --> pdb=" O GLN A3977 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N HIS A3982 " --> pdb=" O GLN A3978 " (cutoff:3.500A) Processing helix chain 'A' and resid 3984 through 4004 removed outlier: 4.431A pdb=" N ALA A3988 " --> pdb=" O ARG A3984 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N VAL A3995 " --> pdb=" O GLY A3991 " (cutoff:3.500A) removed outlier: 4.611A pdb=" N MET A4000 " --> pdb=" O PHE A3996 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N MET A4001 " --> pdb=" O ALA A3997 " (cutoff:3.500A) removed outlier: 4.329A pdb=" N LYS A4002 " --> pdb=" O HIS A3998 " (cutoff:3.500A) removed outlier: 4.079A pdb=" N ALA A4004 " --> pdb=" O MET A4000 " (cutoff:3.500A) Processing helix chain 'A' and resid 4010 through 4032 removed outlier: 4.129A pdb=" N GLU A4015 " --> pdb=" O GLU A4011 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ASP A4022 " --> pdb=" O ASP A4018 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N VAL A4025 " --> pdb=" O LYS A4021 " (cutoff:3.500A) removed outlier: 4.022A pdb=" N LEU A4027 " --> pdb=" O MET A4023 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N SER A4029 " --> pdb=" O VAL A4025 " (cutoff:3.500A) removed outlier: 4.203A pdb=" N LEU A4030 " --> pdb=" O MET A4026 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N LEU A4031 " --> pdb=" O LEU A4027 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N GLU A4032 " --> pdb=" O LEU A4028 " (cutoff:3.500A) Processing helix chain 'A' and resid 4038 through 4052 removed outlier: 3.687A pdb=" N VAL A4045 " --> pdb=" O ALA A4041 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N MET A4047 " --> pdb=" O GLN A4043 " (cutoff:3.500A) removed outlier: 4.807A pdb=" N LEU A4048 " --> pdb=" O MET A4044 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N VAL A4049 " --> pdb=" O VAL A4045 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N SER A4052 " --> pdb=" O LEU A4048 " (cutoff:3.500A) Processing helix chain 'A' and resid 4053 through 4071 removed outlier: 5.450A pdb=" N MET A4057 " --> pdb=" O SER A4053 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N ILE A4058 " --> pdb=" O ASN A4054 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N PHE A4062 " --> pdb=" O ILE A4058 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N ASP A4063 " --> pdb=" O LEU A4059 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N PHE A4065 " --> pdb=" O PHE A4061 " (cutoff:3.500A) removed outlier: 4.104A pdb=" N LEU A4066 " --> pdb=" O PHE A4062 " (cutoff:3.500A) removed outlier: 4.870A pdb=" N LEU A4068 " --> pdb=" O MET A4064 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N LYS A4069 " --> pdb=" O PHE A4065 " (cutoff:3.500A) removed outlier: 4.461A pdb=" N ASP A4070 " --> pdb=" O LEU A4066 " (cutoff:3.500A) Processing helix chain 'A' and resid 4074 through 4080 removed outlier: 3.913A pdb=" N GLN A4078 " --> pdb=" O SER A4074 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ASP A4079 " --> pdb=" O GLU A4075 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N TYR A4080 " --> pdb=" O ALA A4076 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4074 through 4080' Processing helix chain 'A' and resid 4089 through 4101 removed outlier: 3.545A pdb=" N PHE A4093 " --> pdb=" O SER A4089 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N LYS A4095 " --> pdb=" O LYS A4091 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ALA A4096 " --> pdb=" O ASP A4092 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N SER A4099 " --> pdb=" O LYS A4095 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N GLN A4100 " --> pdb=" O ALA A4096 " (cutoff:3.500A) removed outlier: 5.936A pdb=" N LYS A4101 " --> pdb=" O MET A4097 " (cutoff:3.500A) Processing helix chain 'A' and resid 4107 through 4116 removed outlier: 5.147A pdb=" N LEU A4111 " --> pdb=" O GLU A4107 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N GLU A4116 " --> pdb=" O LEU A4112 " (cutoff:3.500A) Processing helix chain 'A' and resid 4124 through 4137 removed outlier: 3.726A pdb=" N ASN A4130 " --> pdb=" O GLU A4126 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N ARG A4131 " --> pdb=" O GLU A4127 " (cutoff:3.500A) removed outlier: 4.574A pdb=" N PHE A4132 " --> pdb=" O PHE A4128 " (cutoff:3.500A) removed outlier: 4.371A pdb=" N GLN A4133 " --> pdb=" O ALA A4129 " (cutoff:3.500A) removed outlier: 4.199A pdb=" N GLU A4134 " --> pdb=" O ASN A4130 " (cutoff:3.500A) Proline residue: A4135 - end of helix Processing helix chain 'A' and resid 4138 through 4154 removed outlier: 3.801A pdb=" N ASN A4142 " --> pdb=" O ASP A4138 " (cutoff:3.500A) removed outlier: 4.057A pdb=" N LEU A4150 " --> pdb=" O LEU A4146 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N SER A4151 " --> pdb=" O LEU A4147 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N GLU A4152 " --> pdb=" O THR A4148 " (cutoff:3.500A) Processing helix chain 'A' and resid 4157 through 4168 removed outlier: 4.176A pdb=" N ARG A4161 " --> pdb=" O ASP A4157 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ASN A4162 " --> pdb=" O PRO A4158 " (cutoff:3.500A) removed outlier: 4.889A pdb=" N PHE A4163 " --> pdb=" O ARG A4159 " (cutoff:3.500A) removed outlier: 4.736A pdb=" N LEU A4164 " --> pdb=" O LEU A4160 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N GLU A4165 " --> pdb=" O ARG A4161 " (cutoff:3.500A) Processing helix chain 'A' and resid 4169 through 4175 Processing helix chain 'A' and resid 4198 through 4207 removed outlier: 3.773A pdb=" N ALA A4203 " --> pdb=" O GLU A4199 " (cutoff:3.500A) removed outlier: 4.263A pdb=" N GLN A4204 " --> pdb=" O THR A4200 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N TRP A4205 " --> pdb=" O ASN A4201 " (cutoff:3.500A) removed outlier: 4.587A pdb=" N GLU A4206 " --> pdb=" O ARG A4202 " (cutoff:3.500A) removed outlier: 5.498A pdb=" N MET A4207 " --> pdb=" O ALA A4203 " (cutoff:3.500A) Processing helix chain 'A' and resid 4208 through 4224 removed outlier: 4.504A pdb=" N GLU A4212 " --> pdb=" O PRO A4208 " (cutoff:3.500A) removed outlier: 5.101A pdb=" N SER A4213 " --> pdb=" O GLN A4209 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ARG A4215 " --> pdb=" O LYS A4211 " (cutoff:3.500A) removed outlier: 4.371A pdb=" N ASP A4220 " --> pdb=" O GLN A4216 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N VAL A4221 " --> pdb=" O PHE A4217 " (cutoff:3.500A) removed outlier: 4.953A pdb=" N VAL A4222 " --> pdb=" O ILE A4218 " (cutoff:3.500A) removed outlier: 3.873A pdb=" N ASN A4223 " --> pdb=" O PHE A4219 " (cutoff:3.500A) removed outlier: 4.794A pdb=" N GLU A4224 " --> pdb=" O ASP A4220 " (cutoff:3.500A) Processing helix chain 'A' and resid 4229 through 4252 removed outlier: 4.557A pdb=" N LEU A4233 " --> pdb=" O GLU A4229 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N PHE A4234 " --> pdb=" O LYS A4230 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N SER A4236 " --> pdb=" O GLU A4232 " (cutoff:3.500A) Processing helix chain 'A' and resid 4541 through 4559 removed outlier: 4.175A pdb=" N VAL A4546 " --> pdb=" O GLY A4542 " (cutoff:3.500A) removed outlier: 4.190A pdb=" N GLN A4547 " --> pdb=" O GLU A4543 " (cutoff:3.500A) removed outlier: 4.173A pdb=" N VAL A4549 " --> pdb=" O GLU A4545 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N TYR A4554 " --> pdb=" O LYS A4550 " (cutoff:3.500A) removed outlier: 4.343A pdb=" N ASN A4558 " --> pdb=" O TYR A4554 " (cutoff:3.500A) removed outlier: 4.292A pdb=" N PHE A4559 " --> pdb=" O LEU A4555 " (cutoff:3.500A) Processing helix chain 'A' and resid 4560 through 4579 removed outlier: 3.802A pdb=" N ALA A4570 " --> pdb=" O ALA A4566 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N LEU A4578 " --> pdb=" O ASN A4574 " (cutoff:3.500A) removed outlier: 5.101A pdb=" N PHE A4579 " --> pdb=" O PHE A4575 " (cutoff:3.500A) Processing helix chain 'A' and resid 4640 through 4683 removed outlier: 3.941A pdb=" N TRP A4644 " --> pdb=" O GLU A4640 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N CYS A4645 " --> pdb=" O PRO A4641 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N LEU A4648 " --> pdb=" O TRP A4644 " (cutoff:3.500A) removed outlier: 4.901A pdb=" N VAL A4666 " --> pdb=" O ASN A4662 " (cutoff:3.500A) Proline residue: A4667 - end of helix removed outlier: 4.246A pdb=" N LYS A4672 " --> pdb=" O LEU A4668 " (cutoff:3.500A) removed outlier: 5.344A pdb=" N ARG A4673 " --> pdb=" O VAL A4669 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N GLU A4674 " --> pdb=" O ILE A4670 " (cutoff:3.500A) Processing helix chain 'A' and resid 4696 through 4707 removed outlier: 4.769A pdb=" N GLN A4700 " --> pdb=" O ASP A4696 " (cutoff:3.500A) removed outlier: 4.658A pdb=" N TRP A4701 " --> pdb=" O VAL A4697 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N ARG A4703 " --> pdb=" O GLY A4699 " (cutoff:3.500A) removed outlier: 4.835A pdb=" N LEU A4704 " --> pdb=" O GLN A4700 " (cutoff:3.500A) removed outlier: 5.039A pdb=" N VAL A4705 " --> pdb=" O TRP A4701 " (cutoff:3.500A) removed outlier: 4.912A pdb=" N LEU A4706 " --> pdb=" O ASP A4702 " (cutoff:3.500A) removed outlier: 5.354A pdb=" N ASN A4707 " --> pdb=" O ARG A4703 " (cutoff:3.500A) Processing helix chain 'A' and resid 4719 through 4729 removed outlier: 3.586A pdb=" N LYS A4723 " --> pdb=" O PHE A4719 " (cutoff:3.500A) removed outlier: 3.733A pdb=" N VAL A4724 " --> pdb=" O VAL A4720 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N LEU A4725 " --> pdb=" O LYS A4721 " (cutoff:3.500A) Processing helix chain 'A' and resid 4733 through 4742 removed outlier: 3.716A pdb=" N ILE A4737 " --> pdb=" O GLY A4733 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N GLU A4739 " --> pdb=" O GLU A4735 " (cutoff:3.500A) Processing helix chain 'A' and resid 4745 through 4756 removed outlier: 3.739A pdb=" N THR A4751 " --> pdb=" O SER A4747 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N ASN A4754 " --> pdb=" O ILE A4750 " (cutoff:3.500A) Processing helix chain 'A' and resid 4766 through 4772 removed outlier: 4.005A pdb=" N SER A4770 " --> pdb=" O THR A4766 " (cutoff:3.500A) removed outlier: 3.885A pdb=" N ILE A4771 " --> pdb=" O TRP A4767 " (cutoff:3.500A) removed outlier: 5.339A pdb=" N ASP A4772 " --> pdb=" O LEU A4768 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4766 through 4772' Processing helix chain 'A' and resid 4773 through 4787 removed outlier: 4.389A pdb=" N ILE A4777 " --> pdb=" O VAL A4773 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N VAL A4782 " --> pdb=" O TRP A4778 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N ILE A4783 " --> pdb=" O LYS A4779 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N PHE A4784 " --> pdb=" O PHE A4780 " (cutoff:3.500A) removed outlier: 5.595A pdb=" N ASN A4787 " --> pdb=" O ILE A4783 " (cutoff:3.500A) Processing helix chain 'A' and resid 4788 through 4803 removed outlier: 3.525A pdb=" N MET A4796 " --> pdb=" O LEU A4792 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N MET A4798 " --> pdb=" O TRP A4794 " (cutoff:3.500A) removed outlier: 4.400A pdb=" N SER A4799 " --> pdb=" O TYR A4795 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N LEU A4800 " --> pdb=" O MET A4796 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N LEU A4801 " --> pdb=" O VAL A4797 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N HIS A4803 " --> pdb=" O SER A4799 " (cutoff:3.500A) Processing helix chain 'A' and resid 4808 through 4821 removed outlier: 5.049A pdb=" N HIS A4812 " --> pdb=" O PHE A4808 " (cutoff:3.500A) removed outlier: 4.386A pdb=" N LEU A4813 " --> pdb=" O PHE A4809 " (cutoff:3.500A) removed outlier: 4.471A pdb=" N LEU A4814 " --> pdb=" O ALA A4810 " (cutoff:3.500A) removed outlier: 4.721A pdb=" N ASP A4815 " --> pdb=" O ALA A4811 " (cutoff:3.500A) removed outlier: 5.169A pdb=" N ILE A4816 " --> pdb=" O HIS A4812 " (cutoff:3.500A) removed outlier: 4.971A pdb=" N ALA A4817 " --> pdb=" O LEU A4813 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N MET A4818 " --> pdb=" O LEU A4814 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N VAL A4820 " --> pdb=" O ILE A4816 " (cutoff:3.500A) removed outlier: 5.949A pdb=" N LYS A4821 " --> pdb=" O ALA A4817 " (cutoff:3.500A) Processing helix chain 'A' and resid 4822 through 4833 removed outlier: 4.746A pdb=" N ILE A4826 " --> pdb=" O THR A4822 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N LEU A4827 " --> pdb=" O LEU A4823 " (cutoff:3.500A) removed outlier: 3.948A pdb=" N VAL A4830 " --> pdb=" O ILE A4826 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N THR A4831 " --> pdb=" O LEU A4827 " (cutoff:3.500A) Processing helix chain 'A' and resid 4834 through 4858 removed outlier: 4.632A pdb=" N MET A4839 " --> pdb=" O LYS A4835 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N VAL A4848 " --> pdb=" O LEU A4844 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N TYR A4849 " --> pdb=" O ALA A4845 " (cutoff:3.500A) removed outlier: 4.205A pdb=" N VAL A4853 " --> pdb=" O TYR A4849 " (cutoff:3.500A) removed outlier: 4.501A pdb=" N VAL A4854 " --> pdb=" O LEU A4850 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N ALA A4855 " --> pdb=" O TYR A4851 " (cutoff:3.500A) Processing helix chain 'A' and resid 4878 through 4890 Processing helix chain 'A' and resid 4897 through 4902 removed outlier: 4.221A pdb=" N ILE A4901 " --> pdb=" O ILE A4897 " (cutoff:3.500A) removed outlier: 5.128A pdb=" N GLU A4902 " --> pdb=" O GLY A4898 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4897 through 4902' Processing helix chain 'A' and resid 4909 through 4924 removed outlier: 3.544A pdb=" N ARG A4913 " --> pdb=" O TYR A4909 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N VAL A4914 " --> pdb=" O GLU A4910 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N VAL A4915 " --> pdb=" O LEU A4911 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N ILE A4918 " --> pdb=" O VAL A4914 " (cutoff:3.500A) removed outlier: 4.111A pdb=" N PHE A4923 " --> pdb=" O THR A4919 " (cutoff:3.500A) Processing helix chain 'A' and resid 4928 through 4956 removed outlier: 3.964A pdb=" N ILE A4932 " --> pdb=" O LEU A4928 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N ILE A4936 " --> pdb=" O ILE A4932 " (cutoff:3.500A) removed outlier: 4.454A pdb=" N ALA A4939 " --> pdb=" O LEU A4935 " (cutoff:3.500A) removed outlier: 3.684A pdb=" N GLU A4948 " --> pdb=" O ARG A4944 " (cutoff:3.500A) removed outlier: 3.819A pdb=" N VAL A4950 " --> pdb=" O GLN A4946 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N LYS A4951 " --> pdb=" O GLN A4947 " (cutoff:3.500A) Processing helix chain 'A' and resid 4973 through 4981 removed outlier: 4.311A pdb=" N THR A4977 " --> pdb=" O HIS A4973 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N HIS A4978 " --> pdb=" O GLY A4974 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N GLU A4981 " --> pdb=" O THR A4977 " (cutoff:3.500A) Processing helix chain 'A' and resid 4984 through 4999 removed outlier: 4.041A pdb=" N TYR A4988 " --> pdb=" O ASN A4984 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N MET A4989 " --> pdb=" O LEU A4985 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N LEU A4995 " --> pdb=" O PHE A4991 " (cutoff:3.500A) removed outlier: 4.263A pdb=" N ILE A4996 " --> pdb=" O LEU A4992 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ASN A4997 " --> pdb=" O MET A4993 " (cutoff:3.500A) removed outlier: 4.437A pdb=" N LYS A4998 " --> pdb=" O TYR A4994 " (cutoff:3.500A) removed outlier: 6.400A pdb=" N ASP A4999 " --> pdb=" O LEU A4995 " (cutoff:3.500A) Processing helix chain 'A' and resid 5004 through 5017 removed outlier: 3.908A pdb=" N TRP A5011 " --> pdb=" O GLU A5007 " (cutoff:3.500A) removed outlier: 4.457A pdb=" N MET A5013 " --> pdb=" O TYR A5009 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N TYR A5014 " --> pdb=" O VAL A5010 " (cutoff:3.500A) removed outlier: 4.433A pdb=" N GLU A5016 " --> pdb=" O LYS A5012 " (cutoff:3.500A) Processing helix chain 'A' and resid 502 through 507 removed outlier: 3.517A pdb=" N GLU A 505 " --> pdb=" O HIS A 502 " (cutoff:3.500A) removed outlier: 4.502A pdb=" N TYR A 506 " --> pdb=" O PHE A 503 " (cutoff:3.500A) removed outlier: 4.336A pdb=" N ALA A 507 " --> pdb=" O ALA A 504 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 502 through 507' Processing helix chain 'A' and resid 810 through 815 removed outlier: 4.330A pdb=" N GLU A 813 " --> pdb=" O PRO A 810 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N ALA A 814 " --> pdb=" O CYS A 811 " (cutoff:3.500A) removed outlier: 5.198A pdb=" N VAL A 815 " --> pdb=" O HIS A 812 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 810 through 815' Processing helix chain 'A' and resid 4966 through 4971 removed outlier: 3.767A pdb=" N ASP A4969 " --> pdb=" O ASP A4966 " (cutoff:3.500A) removed outlier: 4.404A pdb=" N THR A4970 " --> pdb=" O TYR A4967 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N THR A4971 " --> pdb=" O PHE A4968 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4966 through 4971' Processing helix chain 'A' and resid 5030 through 5035 removed outlier: 4.535A pdb=" N GLU A5033 " --> pdb=" O LYS A5030 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N ASP A5034 " --> pdb=" O GLN A5031 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N GLN A5035 " --> pdb=" O TYR A5032 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 5030 through 5035' Processing helix chain 'A' and resid 4685 through 4690 removed outlier: 3.596A pdb=" N GLU A4690 " --> pdb=" O GLY A4685 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 4685 through 4690' Processing helix chain 'C' and resid 61 through 66 removed outlier: 4.759A pdb=" N CYS C 65 " --> pdb=" O ASP C 61 " (cutoff:3.500A) Processing helix chain 'C' and resid 77 through 84 removed outlier: 4.721A pdb=" N MET C 81 " --> pdb=" O ALA C 77 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N ALA C 83 " --> pdb=" O GLN C 79 " (cutoff:3.500A) Processing helix chain 'C' and resid 249 through 256 removed outlier: 3.848A pdb=" N CYS C 253 " --> pdb=" O GLY C 249 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N THR C 254 " --> pdb=" O GLY C 250 " (cutoff:3.500A) removed outlier: 4.642A pdb=" N HIS C 255 " --> pdb=" O ALA C 251 " (cutoff:3.500A) removed outlier: 5.445A pdb=" N ALA C 256 " --> pdb=" O VAL C 252 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 249 through 256' Processing helix chain 'C' and resid 394 through 423 removed outlier: 4.601A pdb=" N SER C 398 " --> pdb=" O GLN C 394 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N GLN C 399 " --> pdb=" O GLN C 395 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N ALA C 400 " --> pdb=" O GLU C 396 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N HIS C 405 " --> pdb=" O ALA C 401 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N GLN C 413 " --> pdb=" O GLY C 409 " (cutoff:3.500A) removed outlier: 4.171A pdb=" N ASP C 419 " --> pdb=" O ILE C 415 " (cutoff:3.500A) removed outlier: 4.105A pdb=" N SER C 420 " --> pdb=" O LYS C 416 " (cutoff:3.500A) removed outlier: 4.692A pdb=" N PHE C 421 " --> pdb=" O GLY C 417 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N SER C 422 " --> pdb=" O LEU C 418 " (cutoff:3.500A) removed outlier: 4.567A pdb=" N GLY C 423 " --> pdb=" O ASP C 419 " (cutoff:3.500A) Processing helix chain 'C' and resid 437 through 453 removed outlier: 4.185A pdb=" N LEU C 443 " --> pdb=" O GLU C 439 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N SER C 444 " --> pdb=" O ALA C 440 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N LEU C 445 " --> pdb=" O VAL C 441 " (cutoff:3.500A) removed outlier: 4.898A pdb=" N GLN C 446 " --> pdb=" O ILE C 442 " (cutoff:3.500A) removed outlier: 4.680A pdb=" N ASP C 447 " --> pdb=" O LEU C 443 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N LEU C 448 " --> pdb=" O SER C 444 " (cutoff:3.500A) Processing helix chain 'C' and resid 460 through 482 removed outlier: 3.809A pdb=" N GLN C 465 " --> pdb=" O HIS C 461 " (cutoff:3.500A) removed outlier: 4.367A pdb=" N SER C 466 " --> pdb=" O GLU C 462 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LYS C 467 " --> pdb=" O GLU C 463 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N ASN C 473 " --> pdb=" O ARG C 469 " (cutoff:3.500A) removed outlier: 4.046A pdb=" N GLU C 480 " --> pdb=" O SER C 476 " (cutoff:3.500A) removed outlier: 4.555A pdb=" N GLU C 481 " --> pdb=" O LEU C 477 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N GLY C 482 " --> pdb=" O PHE C 478 " (cutoff:3.500A) Processing helix chain 'C' and resid 483 through 495 removed outlier: 5.369A pdb=" N VAL C 487 " --> pdb=" O MET C 483 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N LEU C 488 " --> pdb=" O LEU C 484 " (cutoff:3.500A) removed outlier: 5.527A pdb=" N ARG C 493 " --> pdb=" O ASN C 489 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU C 494 " --> pdb=" O CYS C 490 " (cutoff:3.500A) Processing helix chain 'C' and resid 508 through 531 removed outlier: 3.763A pdb=" N SER C 514 " --> pdb=" O GLU C 510 " (cutoff:3.500A) removed outlier: 5.791A pdb=" N LYS C 516 " --> pdb=" O ALA C 512 " (cutoff:3.500A) removed outlier: 5.638A pdb=" N GLU C 517 " --> pdb=" O GLU C 513 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N ILE C 518 " --> pdb=" O SER C 514 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N VAL C 519 " --> pdb=" O TRP C 515 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N LEU C 521 " --> pdb=" O GLU C 517 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N GLU C 524 " --> pdb=" O ASN C 520 " (cutoff:3.500A) Processing helix chain 'C' and resid 533 through 542 removed outlier: 4.583A pdb=" N CYS C 537 " --> pdb=" O ASN C 533 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N ALA C 538 " --> pdb=" O ARG C 534 " (cutoff:3.500A) removed outlier: 5.430A pdb=" N LEU C 539 " --> pdb=" O ALA C 535 " (cutoff:3.500A) removed outlier: 4.431A pdb=" N PHE C 540 " --> pdb=" O ASN C 536 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N SER C 541 " --> pdb=" O CYS C 537 " (cutoff:3.500A) removed outlier: 4.999A pdb=" N THR C 542 " --> pdb=" O ALA C 538 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 533 through 542' Processing helix chain 'C' and resid 543 through 551 removed outlier: 4.023A pdb=" N VAL C 547 " --> pdb=" O ASN C 543 " (cutoff:3.500A) removed outlier: 4.337A pdb=" N LYS C 550 " --> pdb=" O TRP C 546 " (cutoff:3.500A) removed outlier: 5.396A pdb=" N LEU C 551 " --> pdb=" O VAL C 547 " (cutoff:3.500A) Processing helix chain 'C' and resid 556 through 571 removed outlier: 4.411A pdb=" N ILE C 560 " --> pdb=" O ALA C 556 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N LEU C 561 " --> pdb=" O SER C 557 " (cutoff:3.500A) removed outlier: 4.662A pdb=" N GLU C 562 " --> pdb=" O SER C 558 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N CYS C 566 " --> pdb=" O GLU C 562 " (cutoff:3.500A) removed outlier: 3.955A pdb=" N LEU C 568 " --> pdb=" O LEU C 564 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N ILE C 569 " --> pdb=" O TYR C 565 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N GLU C 570 " --> pdb=" O CYS C 566 " (cutoff:3.500A) removed outlier: 4.434A pdb=" N SER C 571 " --> pdb=" O VAL C 567 " (cutoff:3.500A) Processing helix chain 'C' and resid 579 through 593 removed outlier: 3.765A pdb=" N ILE C 583 " --> pdb=" O GLN C 579 " (cutoff:3.500A) removed outlier: 4.287A pdb=" N LYS C 584 " --> pdb=" O GLU C 580 " (cutoff:3.500A) removed outlier: 5.528A pdb=" N SER C 585 " --> pdb=" O ASN C 581 " (cutoff:3.500A) removed outlier: 4.363A pdb=" N ILE C 586 " --> pdb=" O HIS C 582 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N ILE C 587 " --> pdb=" O ILE C 583 " (cutoff:3.500A) Processing helix chain 'C' and resid 596 through 609 removed outlier: 4.706A pdb=" N LEU C 600 " --> pdb=" O ASN C 596 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N ASP C 601 " --> pdb=" O HIS C 597 " (cutoff:3.500A) removed outlier: 4.278A pdb=" N VAL C 602 " --> pdb=" O LYS C 598 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N LEU C 603 " --> pdb=" O VAL C 599 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N CYS C 607 " --> pdb=" O LEU C 603 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N VAL C 608 " --> pdb=" O CYS C 604 " (cutoff:3.500A) removed outlier: 5.086A pdb=" N CYS C 609 " --> pdb=" O SER C 605 " (cutoff:3.500A) Processing helix chain 'C' and resid 614 through 629 removed outlier: 3.844A pdb=" N GLN C 618 " --> pdb=" O VAL C 614 " (cutoff:3.500A) removed outlier: 4.970A pdb=" N ASP C 619 " --> pdb=" O ARG C 615 " (cutoff:3.500A) removed outlier: 5.872A pdb=" N LEU C 620 " --> pdb=" O SER C 616 " (cutoff:3.500A) removed outlier: 5.004A pdb=" N ILE C 621 " --> pdb=" O ASN C 617 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N THR C 622 " --> pdb=" O GLN C 618 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N ASN C 624 " --> pdb=" O LEU C 620 " (cutoff:3.500A) removed outlier: 4.670A pdb=" N LEU C 626 " --> pdb=" O THR C 622 " (cutoff:3.500A) Proline residue: C 627 - end of helix Processing helix chain 'C' and resid 864 through 890 removed outlier: 4.317A pdb=" N GLU C 868 " --> pdb=" O PRO C 864 " (cutoff:3.500A) removed outlier: 5.668A pdb=" N ARG C 869 " --> pdb=" O PRO C 865 " (cutoff:3.500A) removed outlier: 5.992A pdb=" N ILE C 870 " --> pdb=" O HIS C 866 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ARG C 871 " --> pdb=" O LEU C 867 " (cutoff:3.500A) removed outlier: 3.714A pdb=" N GLU C 872 " --> pdb=" O GLU C 868 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N ALA C 875 " --> pdb=" O ARG C 871 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N THR C 885 " --> pdb=" O LEU C 881 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N ARG C 886 " --> pdb=" O TRP C 882 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N GLU C 888 " --> pdb=" O LEU C 884 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N GLN C 889 " --> pdb=" O THR C 885 " (cutoff:3.500A) Processing helix chain 'C' and resid 909 through 914 removed outlier: 3.928A pdb=" N LEU C 913 " --> pdb=" O ASN C 909 " (cutoff:3.500A) Proline residue: C 914 - end of helix No H-bonds generated for 'chain 'C' and resid 909 through 914' Processing helix chain 'C' and resid 915 through 936 removed outlier: 3.870A pdb=" N TYR C 920 " --> pdb=" O PRO C 916 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ASN C 921 " --> pdb=" O GLU C 917 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N LYS C 930 " --> pdb=" O GLY C 926 " (cutoff:3.500A) removed outlier: 4.388A pdb=" N THR C 931 " --> pdb=" O GLU C 927 " (cutoff:3.500A) removed outlier: 4.732A pdb=" N LEU C 932 " --> pdb=" O THR C 928 " (cutoff:3.500A) removed outlier: 5.114A pdb=" N LEU C 933 " --> pdb=" O LEU C 929 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N ALA C 934 " --> pdb=" O LYS C 930 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N LEU C 935 " --> pdb=" O THR C 931 " (cutoff:3.500A) removed outlier: 4.054A pdb=" N GLY C 936 " --> pdb=" O LEU C 932 " (cutoff:3.500A) Processing helix chain 'C' and resid 943 through 951 removed outlier: 4.100A pdb=" N GLU C 947 " --> pdb=" O ASP C 943 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N ASP C 948 " --> pdb=" O GLU C 944 " (cutoff:3.500A) removed outlier: 5.555A pdb=" N LYS C 951 " --> pdb=" O GLU C 947 " (cutoff:3.500A) Processing helix chain 'C' and resid 979 through 1004 removed outlier: 3.871A pdb=" N THR C 983 " --> pdb=" O PRO C 979 " (cutoff:3.500A) removed outlier: 3.879A pdb=" N LEU C 984 " --> pdb=" O ALA C 980 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N ASP C 986 " --> pdb=" O THR C 982 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N ARG C 987 " --> pdb=" O THR C 983 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLU C 990 " --> pdb=" O ASP C 986 " (cutoff:3.500A) removed outlier: 4.550A pdb=" N VAL C 995 " --> pdb=" O ASN C 991 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N TRP C 996 " --> pdb=" O GLY C 992 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N GLY C1004 " --> pdb=" O ARG C1000 " (cutoff:3.500A) Processing helix chain 'C' and resid 1028 through 1050 removed outlier: 3.974A pdb=" N LYS C1032 " --> pdb=" O ASP C1028 " (cutoff:3.500A) removed outlier: 4.590A pdb=" N ARG C1033 " --> pdb=" O GLU C1029 " (cutoff:3.500A) removed outlier: 4.950A pdb=" N SER C1034 " --> pdb=" O ALA C1030 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N SER C1038 " --> pdb=" O SER C1034 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N GLN C1041 " --> pdb=" O ASP C1037 " (cutoff:3.500A) removed outlier: 5.304A pdb=" N ALA C1042 " --> pdb=" O SER C1038 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N VAL C1043 " --> pdb=" O LEU C1039 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N ARG C1044 " --> pdb=" O CYS C1040 " (cutoff:3.500A) removed outlier: 4.572A pdb=" N THR C1045 " --> pdb=" O GLN C1041 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N GLY C1050 " --> pdb=" O LEU C1046 " (cutoff:3.500A) Processing helix chain 'C' and resid 1207 through 1212 removed outlier: 3.943A pdb=" N LEU C1211 " --> pdb=" O ASP C1207 " (cutoff:3.500A) removed outlier: 5.510A pdb=" N ARG C1212 " --> pdb=" O VAL C1208 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1207 through 1212' Processing helix chain 'C' and resid 1213 through 1218 removed outlier: 4.421A pdb=" N CYS C1217 " --> pdb=" O PHE C1213 " (cutoff:3.500A) removed outlier: 4.473A pdb=" N GLY C1218 " --> pdb=" O PHE C1214 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1213 through 1218' Processing helix chain 'C' and resid 1423 through 1431 removed outlier: 4.171A pdb=" N ILE C1427 " --> pdb=" O ASP C1423 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N LEU C1428 " --> pdb=" O PRO C1424 " (cutoff:3.500A) removed outlier: 4.795A pdb=" N ASN C1429 " --> pdb=" O GLU C1425 " (cutoff:3.500A) removed outlier: 4.274A pdb=" N THR C1430 " --> pdb=" O ILE C1426 " (cutoff:3.500A) removed outlier: 5.919A pdb=" N THR C1431 " --> pdb=" O ILE C1427 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1423 through 1431' Processing helix chain 'C' and resid 1444 through 1449 removed outlier: 4.429A pdb=" N VAL C1448 " --> pdb=" O GLU C1444 " (cutoff:3.500A) removed outlier: 6.110A pdb=" N TRP C1449 " --> pdb=" O PRO C1445 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1444 through 1449' Processing helix chain 'C' and resid 1465 through 1470 removed outlier: 4.075A pdb=" N VAL C1469 " --> pdb=" O ASP C1465 " (cutoff:3.500A) removed outlier: 6.862A pdb=" N ARG C1470 " --> pdb=" O LEU C1466 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1465 through 1470' Processing helix chain 'C' and resid 1496 through 1501 removed outlier: 5.047A pdb=" N PHE C1500 " --> pdb=" O TRP C1496 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N VAL C1501 " --> pdb=" O GLY C1497 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1496 through 1501' Processing helix chain 'C' and resid 1574 through 1581 removed outlier: 4.356A pdb=" N ALA C1578 " --> pdb=" O PRO C1574 " (cutoff:3.500A) removed outlier: 4.339A pdb=" N PHE C1580 " --> pdb=" O SER C1576 " (cutoff:3.500A) removed outlier: 5.717A pdb=" N LEU C1581 " --> pdb=" O ALA C1577 " (cutoff:3.500A) Processing helix chain 'C' and resid 1649 through 1657 removed outlier: 4.184A pdb=" N LEU C1653 " --> pdb=" O ASP C1649 " (cutoff:3.500A) removed outlier: 5.144A pdb=" N SER C1654 " --> pdb=" O ILE C1650 " (cutoff:3.500A) removed outlier: 6.200A pdb=" N GLU C1655 " --> pdb=" O LEU C1651 " (cutoff:3.500A) removed outlier: 4.456A pdb=" N ARG C1656 " --> pdb=" O GLU C1652 " (cutoff:3.500A) removed outlier: 5.082A pdb=" N LEU C1657 " --> pdb=" O LEU C1653 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1649 through 1657' Processing helix chain 'C' and resid 1658 through 1675 removed outlier: 3.865A pdb=" N PHE C1662 " --> pdb=" O ASP C1658 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N HIS C1665 " --> pdb=" O ARG C1661 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N LEU C1667 " --> pdb=" O HIS C1663 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N ARG C1668 " --> pdb=" O SER C1664 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N LEU C1669 " --> pdb=" O HIS C1665 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N CYS C1674 " --> pdb=" O TYR C1670 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N ALA C1675 " --> pdb=" O ARG C1671 " (cutoff:3.500A) Processing helix chain 'C' and resid 1678 through 1689 removed outlier: 4.482A pdb=" N ALA C1682 " --> pdb=" O ASN C1678 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N HIS C1683 " --> pdb=" O ASN C1679 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N ALA C1684 " --> pdb=" O ARG C1680 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N CYS C1686 " --> pdb=" O ALA C1682 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N SER C1687 " --> pdb=" O HIS C1683 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N HIS C1688 " --> pdb=" O ALA C1684 " (cutoff:3.500A) Processing helix chain 'C' and resid 1690 through 1700 removed outlier: 3.749A pdb=" N ALA C1697 " --> pdb=" O GLN C1693 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N GLU C1699 " --> pdb=" O LEU C1695 " (cutoff:3.500A) Processing helix chain 'C' and resid 1704 through 1719 removed outlier: 3.839A pdb=" N TYR C1712 " --> pdb=" O ARG C1708 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N HIS C1719 " --> pdb=" O LEU C1715 " (cutoff:3.500A) Processing helix chain 'C' and resid 1720 through 1731 removed outlier: 4.082A pdb=" N CYS C1724 " --> pdb=" O LEU C1720 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N ARG C1725 " --> pdb=" O GLU C1721 " (cutoff:3.500A) removed outlier: 4.859A pdb=" N SER C1726 " --> pdb=" O SER C1722 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N ARG C1727 " --> pdb=" O ALA C1723 " (cutoff:3.500A) removed outlier: 4.189A pdb=" N MET C1730 " --> pdb=" O SER C1726 " (cutoff:3.500A) Processing helix chain 'C' and resid 1739 through 1744 removed outlier: 4.460A pdb=" N ARG C1743 " --> pdb=" O THR C1739 " (cutoff:3.500A) removed outlier: 5.169A pdb=" N ALA C1744 " --> pdb=" O PRO C1740 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 1739 through 1744' Processing helix chain 'C' and resid 1803 through 1825 removed outlier: 4.068A pdb=" N LEU C1807 " --> pdb=" O PRO C1803 " (cutoff:3.500A) removed outlier: 4.846A pdb=" N ASP C1809 " --> pdb=" O GLU C1805 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N LYS C1810 " --> pdb=" O ALA C1806 " (cutoff:3.500A) removed outlier: 4.407A pdb=" N LEU C1812 " --> pdb=" O ARG C1808 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N MET C1814 " --> pdb=" O LYS C1810 " (cutoff:3.500A) removed outlier: 5.202A pdb=" N LEU C1815 " --> pdb=" O ALA C1811 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N ARG C1820 " --> pdb=" O GLY C1816 " (cutoff:3.500A) Processing helix chain 'C' and resid 1833 through 1852 Proline residue: C1840 - end of helix removed outlier: 3.782A pdb=" N THR C1847 " --> pdb=" O LYS C1843 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N LEU C1848 " --> pdb=" O LEU C1844 " (cutoff:3.500A) Processing helix chain 'C' and resid 1855 through 1867 removed outlier: 4.399A pdb=" N VAL C1859 " --> pdb=" O GLY C1855 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N LYS C1860 " --> pdb=" O ASP C1856 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N GLN C1861 " --> pdb=" O GLU C1857 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N ILE C1862 " --> pdb=" O ASP C1858 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLU C1867 " --> pdb=" O LEU C1863 " (cutoff:3.500A) Processing helix chain 'C' and resid 1932 through 1984 removed outlier: 4.264A pdb=" N LYS C1936 " --> pdb=" O PRO C1932 " (cutoff:3.500A) removed outlier: 5.377A pdb=" N LEU C1937 " --> pdb=" O GLU C1933 " (cutoff:3.500A) removed outlier: 6.012A pdb=" N GLN C1938 " --> pdb=" O SER C1934 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N MET C1939 " --> pdb=" O VAL C1935 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N CYS C1940 " --> pdb=" O LYS C1936 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ARG C1954 " --> pdb=" O GLU C1950 " (cutoff:3.500A) removed outlier: 3.897A pdb=" N VAL C1966 " --> pdb=" O ALA C1962 " (cutoff:3.500A) removed outlier: 5.295A pdb=" N ALA C1971 " --> pdb=" O ASP C1967 " (cutoff:3.500A) removed outlier: 4.336A pdb=" N ASN C1972 " --> pdb=" O LYS C1968 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N ARG C1974 " --> pdb=" O GLN C1970 " (cutoff:3.500A) removed outlier: 4.383A pdb=" N ARG C1982 " --> pdb=" O ALA C1978 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N ALA C1983 " --> pdb=" O LEU C1979 " (cutoff:3.500A) removed outlier: 5.895A pdb=" N PHE C1984 " --> pdb=" O LEU C1980 " (cutoff:3.500A) Processing helix chain 'C' and resid 1987 through 1998 removed outlier: 4.471A pdb=" N THR C1991 " --> pdb=" O SER C1987 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N ALA C1992 " --> pdb=" O ALA C1988 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N ARG C1996 " --> pdb=" O ALA C1992 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N GLU C1997 " --> pdb=" O ARG C1993 " (cutoff:3.500A) Processing helix chain 'C' and resid 2001 through 2011 removed outlier: 4.280A pdb=" N ILE C2006 " --> pdb=" O PRO C2002 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N ASN C2007 " --> pdb=" O GLN C2003 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N LEU C2010 " --> pdb=" O ILE C2006 " (cutoff:3.500A) removed outlier: 4.536A pdb=" N HIS C2011 " --> pdb=" O ASN C2007 " (cutoff:3.500A) Processing helix chain 'C' and resid 2024 through 2043 removed outlier: 4.817A pdb=" N ARG C2028 " --> pdb=" O PRO C2024 " (cutoff:3.500A) removed outlier: 6.389A pdb=" N GLN C2029 " --> pdb=" O GLU C2025 " (cutoff:3.500A) removed outlier: 6.430A pdb=" N ASP C2030 " --> pdb=" O ASP C2026 " (cutoff:3.500A) removed outlier: 5.992A pdb=" N LEU C2031 " --> pdb=" O ILE C2027 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N GLN C2032 " --> pdb=" O ARG C2028 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N GLN C2036 " --> pdb=" O GLN C2032 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N ASP C2037 " --> pdb=" O ASP C2033 " (cutoff:3.500A) removed outlier: 4.075A pdb=" N GLY C2043 " --> pdb=" O LEU C2039 " (cutoff:3.500A) Processing helix chain 'C' and resid 2093 through 2109 removed outlier: 3.625A pdb=" N VAL C2098 " --> pdb=" O LEU C2094 " (cutoff:3.500A) removed outlier: 4.352A pdb=" N SER C2099 " --> pdb=" O GLN C2095 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N HIS C2100 " --> pdb=" O GLU C2096 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N MET C2101 " --> pdb=" O LEU C2097 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N VAL C2102 " --> pdb=" O VAL C2098 " (cutoff:3.500A) removed outlier: 4.529A pdb=" N VAL C2103 " --> pdb=" O SER C2099 " (cutoff:3.500A) removed outlier: 4.084A pdb=" N ARG C2104 " --> pdb=" O HIS C2100 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLU C2108 " --> pdb=" O ARG C2104 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N ASP C2109 " --> pdb=" O TRP C2105 " (cutoff:3.500A) Processing helix chain 'C' and resid 2113 through 2130 removed outlier: 4.255A pdb=" N VAL C2117 " --> pdb=" O SER C2113 " (cutoff:3.500A) removed outlier: 4.194A pdb=" N ARG C2118 " --> pdb=" O PRO C2114 " (cutoff:3.500A) removed outlier: 4.168A pdb=" N PHE C2121 " --> pdb=" O VAL C2117 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N HIS C2125 " --> pdb=" O PHE C2121 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N ARG C2126 " --> pdb=" O SER C2122 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N GLN C2127 " --> pdb=" O LEU C2123 " (cutoff:3.500A) Processing helix chain 'C' and resid 2131 through 2142 Proline residue: C2139 - end of helix removed outlier: 5.551A pdb=" N TYR C2142 " --> pdb=" O LEU C2138 " (cutoff:3.500A) Processing helix chain 'C' and resid 2148 through 2169 removed outlier: 4.645A pdb=" N SER C2154 " --> pdb=" O GLU C2150 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N LEU C2155 " --> pdb=" O ASP C2151 " (cutoff:3.500A) removed outlier: 4.989A pdb=" N ILE C2167 " --> pdb=" O ARG C2163 " (cutoff:3.500A) removed outlier: 4.621A pdb=" N VAL C2168 " --> pdb=" O SER C2164 " (cutoff:3.500A) removed outlier: 5.066A pdb=" N GLN C2169 " --> pdb=" O LEU C2165 " (cutoff:3.500A) Processing helix chain 'C' and resid 2173 through 2189 removed outlier: 5.104A pdb=" N LEU C2177 " --> pdb=" O GLN C2173 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N MET C2178 " --> pdb=" O GLU C2174 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N ILE C2179 " --> pdb=" O GLU C2175 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N SER C2181 " --> pdb=" O LEU C2177 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N MET C2186 " --> pdb=" O ILE C2182 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ASN C2187 " --> pdb=" O GLY C2183 " (cutoff:3.500A) removed outlier: 4.288A pdb=" N ASN C2188 " --> pdb=" O ASN C2184 " (cutoff:3.500A) removed outlier: 5.097A pdb=" N LYS C2189 " --> pdb=" O ILE C2185 " (cutoff:3.500A) Processing helix chain 'C' and resid 2195 through 2202 removed outlier: 4.419A pdb=" N ARG C2199 " --> pdb=" O PRO C2195 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ALA C2200 " --> pdb=" O ASN C2196 " (cutoff:3.500A) Processing helix chain 'C' and resid 2203 through 2216 removed outlier: 4.780A pdb=" N MET C2208 " --> pdb=" O HIS C2204 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N VAL C2210 " --> pdb=" O THR C2206 " (cutoff:3.500A) removed outlier: 3.976A pdb=" N MET C2211 " --> pdb=" O VAL C2207 " (cutoff:3.500A) removed outlier: 3.672A pdb=" N ASN C2213 " --> pdb=" O GLU C2209 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N VAL C2214 " --> pdb=" O VAL C2210 " (cutoff:3.500A) Processing helix chain 'C' and resid 2225 through 2244 removed outlier: 4.157A pdb=" N VAL C2229 " --> pdb=" O PHE C2225 " (cutoff:3.500A) removed outlier: 4.559A pdb=" N THR C2230 " --> pdb=" O PRO C2226 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N SER C2231 " --> pdb=" O LYS C2227 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N LEU C2236 " --> pdb=" O CYS C2232 " (cutoff:3.500A) removed outlier: 3.714A pdb=" N TYR C2238 " --> pdb=" O ARG C2234 " (cutoff:3.500A) removed outlier: 4.284A pdb=" N ARG C2241 " --> pdb=" O CYS C2237 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N ILE C2242 " --> pdb=" O TYR C2238 " (cutoff:3.500A) removed outlier: 5.022A pdb=" N SER C2243 " --> pdb=" O PHE C2239 " (cutoff:3.500A) removed outlier: 4.886A pdb=" N ARG C2244 " --> pdb=" O CYS C2240 " (cutoff:3.500A) Processing helix chain 'C' and resid 2245 through 2255 removed outlier: 4.459A pdb=" N SER C2249 " --> pdb=" O GLN C2245 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N MET C2250 " --> pdb=" O ASN C2246 " (cutoff:3.500A) removed outlier: 4.614A pdb=" N ASP C2252 " --> pdb=" O ARG C2248 " (cutoff:3.500A) removed outlier: 5.200A pdb=" N HIS C2253 " --> pdb=" O SER C2249 " (cutoff:3.500A) removed outlier: 3.884A pdb=" N LEU C2254 " --> pdb=" O MET C2250 " (cutoff:3.500A) removed outlier: 5.037A pdb=" N SER C2255 " --> pdb=" O PHE C2251 " (cutoff:3.500A) Processing helix chain 'C' and resid 2256 through 2262 removed outlier: 4.038A pdb=" N ASN C2260 " --> pdb=" O TYR C2256 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N SER C2261 " --> pdb=" O LEU C2257 " (cutoff:3.500A) removed outlier: 5.233A pdb=" N GLY C2262 " --> pdb=" O LEU C2258 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 2256 through 2262' Processing helix chain 'C' and resid 2271 through 2282 removed outlier: 4.709A pdb=" N VAL C2275 " --> pdb=" O THR C2271 " (cutoff:3.500A) removed outlier: 3.991A pdb=" N ALA C2276 " --> pdb=" O PRO C2272 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N VAL C2280 " --> pdb=" O ALA C2276 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N ILE C2281 " --> pdb=" O ALA C2277 " (cutoff:3.500A) removed outlier: 6.513A pdb=" N ASP C2282 " --> pdb=" O ALA C2278 " (cutoff:3.500A) Processing helix chain 'C' and resid 2283 through 2290 removed outlier: 3.707A pdb=" N ALA C2287 " --> pdb=" O ASN C2283 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N ALA C2289 " --> pdb=" O GLU C2285 " (cutoff:3.500A) removed outlier: 5.113A pdb=" N LEU C2290 " --> pdb=" O LEU C2286 " (cutoff:3.500A) Processing helix chain 'C' and resid 2291 through 2308 removed outlier: 4.509A pdb=" N LEU C2295 " --> pdb=" O GLN C2291 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N GLU C2296 " --> pdb=" O GLU C2292 " (cutoff:3.500A) removed outlier: 5.054A pdb=" N LYS C2297 " --> pdb=" O GLN C2293 " (cutoff:3.500A) removed outlier: 5.340A pdb=" N VAL C2298 " --> pdb=" O ASP C2294 " (cutoff:3.500A) removed outlier: 3.773A pdb=" N VAL C2299 " --> pdb=" O LEU C2295 " (cutoff:3.500A) removed outlier: 4.384A pdb=" N LEU C2307 " --> pdb=" O ALA C2303 " (cutoff:3.500A) Processing helix chain 'C' and resid 2310 through 2317 removed outlier: 3.746A pdb=" N LEU C2314 " --> pdb=" O CYS C2310 " (cutoff:3.500A) removed outlier: 3.955A pdb=" N ALA C2315 " --> pdb=" O PRO C2311 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N LYS C2316 " --> pdb=" O MET C2312 " (cutoff:3.500A) Processing helix chain 'C' and resid 2324 through 2340 removed outlier: 3.864A pdb=" N GLY C2328 " --> pdb=" O ASN C2324 " (cutoff:3.500A) removed outlier: 4.695A pdb=" N ARG C2330 " --> pdb=" O CYS C2326 " (cutoff:3.500A) removed outlier: 5.197A pdb=" N TYR C2331 " --> pdb=" O GLY C2327 " (cutoff:3.500A) removed outlier: 4.256A pdb=" N LEU C2332 " --> pdb=" O GLY C2328 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N ASP C2333 " --> pdb=" O GLU C2329 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N PHE C2334 " --> pdb=" O ARG C2330 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N LEU C2335 " --> pdb=" O TYR C2331 " (cutoff:3.500A) Processing helix chain 'C' and resid 2346 through 2361 removed outlier: 4.241A pdb=" N ALA C2350 " --> pdb=" O VAL C2346 " (cutoff:3.500A) removed outlier: 4.566A pdb=" N ASN C2351 " --> pdb=" O GLU C2347 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N VAL C2354 " --> pdb=" O ALA C2350 " (cutoff:3.500A) removed outlier: 4.338A pdb=" N ARG C2355 " --> pdb=" O ASN C2351 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ARG C2359 " --> pdb=" O ARG C2355 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N LYS C2360 " --> pdb=" O LEU C2356 " (cutoff:3.500A) Proline residue: C2361 - end of helix Processing helix chain 'C' and resid 2375 through 2390 removed outlier: 3.975A pdb=" N ALA C2379 " --> pdb=" O GLY C2375 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N ILE C2380 " --> pdb=" O LEU C2376 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N GLU C2382 " --> pdb=" O ALA C2378 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ARG C2385 " --> pdb=" O GLU C2381 " (cutoff:3.500A) Proline residue: C2390 - end of helix Processing helix chain 'C' and resid 2417 through 2437 removed outlier: 3.893A pdb=" N ILE C2422 " --> pdb=" O LEU C2418 " (cutoff:3.500A) removed outlier: 5.011A pdb=" N MET C2423 " --> pdb=" O GLY C2419 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N TYR C2426 " --> pdb=" O ILE C2422 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N ASP C2431 " --> pdb=" O ALA C2427 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N LEU C2432 " --> pdb=" O ALA C2428 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N LEU C2433 " --> pdb=" O LEU C2429 " (cutoff:3.500A) removed outlier: 4.297A pdb=" N ALA C2437 " --> pdb=" O LEU C2433 " (cutoff:3.500A) Processing helix chain 'C' and resid 2439 through 2446 removed outlier: 3.709A pdb=" N ILE C2443 " --> pdb=" O GLU C2439 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N GLN C2444 " --> pdb=" O MET C2440 " (cutoff:3.500A) removed outlier: 4.226A pdb=" N ALA C2445 " --> pdb=" O HIS C2441 " (cutoff:3.500A) removed outlier: 5.633A pdb=" N GLY C2446 " --> pdb=" O LEU C2442 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 2439 through 2446' Processing helix chain 'C' and resid 2447 through 2462 removed outlier: 4.619A pdb=" N LEU C2451 " --> pdb=" O LYS C2447 " (cutoff:3.500A) removed outlier: 5.207A pdb=" N ARG C2452 " --> pdb=" O GLY C2448 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N ILE C2453 " --> pdb=" O GLU C2449 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N ARG C2454 " --> pdb=" O ALA C2450 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N VAL C2461 " --> pdb=" O LEU C2457 " (cutoff:3.500A) Proline residue: C2462 - end of helix Processing helix chain 'C' and resid 2463 through 2472 removed outlier: 4.018A pdb=" N VAL C2467 " --> pdb=" O LEU C2463 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N GLY C2468 " --> pdb=" O ASP C2464 " (cutoff:3.500A) removed outlier: 4.142A pdb=" N ILE C2469 " --> pdb=" O ASP C2465 " (cutoff:3.500A) Processing helix chain 'C' and resid 2495 through 2509 removed outlier: 4.348A pdb=" N LYS C2499 " --> pdb=" O VAL C2495 " (cutoff:3.500A) removed outlier: 4.526A pdb=" N SER C2501 " --> pdb=" O ASP C2497 " (cutoff:3.500A) removed outlier: 4.081A pdb=" N MET C2502 " --> pdb=" O HIS C2498 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N VAL C2503 " --> pdb=" O LYS C2499 " (cutoff:3.500A) removed outlier: 4.510A pdb=" N LEU C2504 " --> pdb=" O ALA C2500 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N ARG C2508 " --> pdb=" O LEU C2504 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N VAL C2509 " --> pdb=" O PHE C2505 " (cutoff:3.500A) Processing helix chain 'C' and resid 2514 through 2537 removed outlier: 4.039A pdb=" N LEU C2518 " --> pdb=" O ASN C2514 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N HIS C2520 " --> pdb=" O ASP C2516 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N LEU C2522 " --> pdb=" O LEU C2518 " (cutoff:3.500A) removed outlier: 3.893A pdb=" N ASP C2523 " --> pdb=" O LEU C2519 " (cutoff:3.500A) removed outlier: 4.603A pdb=" N VAL C2524 " --> pdb=" O HIS C2520 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N GLY C2525 " --> pdb=" O VAL C2521 " (cutoff:3.500A) removed outlier: 4.794A pdb=" N PHE C2526 " --> pdb=" O LEU C2522 " (cutoff:3.500A) removed outlier: 5.435A pdb=" N LEU C2527 " --> pdb=" O ASP C2523 " (cutoff:3.500A) Proline residue: C2528 - end of helix removed outlier: 3.504A pdb=" N ALA C2532 " --> pdb=" O PRO C2528 " (cutoff:3.500A) removed outlier: 3.916A pdb=" N LEU C2536 " --> pdb=" O ALA C2532 " (cutoff:3.500A) Processing helix chain 'C' and resid 2544 through 2566 removed outlier: 3.781A pdb=" N LEU C2548 " --> pdb=" O THR C2544 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N TYR C2553 " --> pdb=" O ALA C2549 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N VAL C2558 " --> pdb=" O LEU C2554 " (cutoff:3.500A) removed outlier: 6.491A pdb=" N LEU C2559 " --> pdb=" O CYS C2555 " (cutoff:3.500A) Proline residue: C2560 - end of helix removed outlier: 3.836A pdb=" N LYS C2564 " --> pdb=" O PRO C2560 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N CYS C2565 " --> pdb=" O LEU C2561 " (cutoff:3.500A) Processing helix chain 'C' and resid 2575 through 2591 removed outlier: 5.098A pdb=" N VAL C2579 " --> pdb=" O ARG C2575 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N ASP C2580 " --> pdb=" O ALA C2576 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N TYR C2587 " --> pdb=" O LEU C2583 " (cutoff:3.500A) removed outlier: 4.866A pdb=" N ARG C2591 " --> pdb=" O TYR C2587 " (cutoff:3.500A) Processing helix chain 'C' and resid 2598 through 2614 removed outlier: 5.121A pdb=" N VAL C2602 " --> pdb=" O ALA C2598 " (cutoff:3.500A) removed outlier: 4.678A pdb=" N ILE C2603 " --> pdb=" O GLN C2599 " (cutoff:3.500A) removed outlier: 4.141A pdb=" N MET C2608 " --> pdb=" O GLU C2604 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N ALA C2609 " --> pdb=" O ASP C2605 " (cutoff:3.500A) removed outlier: 4.747A pdb=" N TYR C2613 " --> pdb=" O ALA C2609 " (cutoff:3.500A) removed outlier: 5.051A pdb=" N ILE C2614 " --> pdb=" O LEU C2610 " (cutoff:3.500A) Processing helix chain 'C' and resid 2618 through 2634 removed outlier: 4.874A pdb=" N LEU C2622 " --> pdb=" O MET C2618 " (cutoff:3.500A) removed outlier: 4.666A pdb=" N ARG C2625 " --> pdb=" O HIS C2621 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N VAL C2627 " --> pdb=" O LEU C2623 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N PHE C2628 " --> pdb=" O ARG C2624 " (cutoff:3.500A) removed outlier: 4.368A pdb=" N ASP C2629 " --> pdb=" O ARG C2625 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N VAL C2630 " --> pdb=" O LEU C2626 " (cutoff:3.500A) Proline residue: C2631 - end of helix removed outlier: 4.886A pdb=" N ASN C2634 " --> pdb=" O VAL C2630 " (cutoff:3.500A) Processing helix chain 'C' and resid 2748 through 2774 removed outlier: 3.906A pdb=" N ASP C2752 " --> pdb=" O PRO C2748 " (cutoff:3.500A) removed outlier: 4.148A pdb=" N SER C2753 " --> pdb=" O GLU C2749 " (cutoff:3.500A) removed outlier: 4.033A pdb=" N ASN C2756 " --> pdb=" O ASP C2752 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N GLN C2772 " --> pdb=" O PHE C2768 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N ASN C2773 " --> pdb=" O ASP C2769 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N ASN C2774 " --> pdb=" O LYS C2770 " (cutoff:3.500A) Processing helix chain 'C' and resid 2798 through 2803 removed outlier: 3.594A pdb=" N GLU C2803 " --> pdb=" O GLU C2799 " (cutoff:3.500A) Processing helix chain 'C' and resid 2805 through 2820 removed outlier: 3.717A pdb=" N ILE C2809 " --> pdb=" O TYR C2805 " (cutoff:3.500A) removed outlier: 4.489A pdb=" N SER C2812 " --> pdb=" O PRO C2808 " (cutoff:3.500A) removed outlier: 4.626A pdb=" N LEU C2813 " --> pdb=" O ILE C2809 " (cutoff:3.500A) Processing helix chain 'C' and resid 2868 through 2896 removed outlier: 3.999A pdb=" N ALA C2873 " --> pdb=" O ARG C2869 " (cutoff:3.500A) Processing helix chain 'C' and resid 2913 through 2932 removed outlier: 4.062A pdb=" N ARG C2918 " --> pdb=" O LYS C2914 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N ARG C2920 " --> pdb=" O LYS C2916 " (cutoff:3.500A) removed outlier: 5.047A pdb=" N GLU C2921 " --> pdb=" O ALA C2917 " (cutoff:3.500A) removed outlier: 4.802A pdb=" N LYS C2922 " --> pdb=" O ARG C2918 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N ALA C2923 " --> pdb=" O ASP C2919 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N MET C2932 " --> pdb=" O LYS C2928 " (cutoff:3.500A) Processing helix chain 'C' and resid 3625 through 3638 removed outlier: 4.575A pdb=" N ARG C3629 " --> pdb=" O SER C3625 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N ARG C3630 " --> pdb=" O LYS C3626 " (cutoff:3.500A) removed outlier: 4.157A pdb=" N VAL C3632 " --> pdb=" O ARG C3628 " (cutoff:3.500A) removed outlier: 4.609A pdb=" N VAL C3633 " --> pdb=" O ARG C3629 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ARG C3637 " --> pdb=" O VAL C3633 " (cutoff:3.500A) Processing helix chain 'C' and resid 3640 through 3645 removed outlier: 3.927A pdb=" N LEU C3644 " --> pdb=" O PRO C3640 " (cutoff:3.500A) Proline residue: C3645 - end of helix No H-bonds generated for 'chain 'C' and resid 3640 through 3645' Processing helix chain 'C' and resid 3646 through 3665 removed outlier: 3.983A pdb=" N ASN C3651 " --> pdb=" O HIS C3647 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N LEU C3654 " --> pdb=" O CYS C3650 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N GLU C3655 " --> pdb=" O ASN C3651 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N SER C3656 " --> pdb=" O MET C3652 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N ALA C3659 " --> pdb=" O GLU C3655 " (cutoff:3.500A) removed outlier: 3.916A pdb=" N ILE C3662 " --> pdb=" O LYS C3658 " (cutoff:3.500A) removed outlier: 5.143A pdb=" N LEU C3663 " --> pdb=" O ALA C3659 " (cutoff:3.500A) removed outlier: 4.791A pdb=" N THR C3664 " --> pdb=" O ALA C3660 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N GLU C3665 " --> pdb=" O TRP C3661 " (cutoff:3.500A) Processing helix chain 'C' and resid 3668 through 3681 removed outlier: 4.499A pdb=" N ARG C3672 " --> pdb=" O SER C3668 " (cutoff:3.500A) removed outlier: 3.773A pdb=" N MET C3673 " --> pdb=" O PHE C3669 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N ILE C3674 " --> pdb=" O GLU C3670 " (cutoff:3.500A) removed outlier: 3.919A pdb=" N ASP C3675 " --> pdb=" O ASP C3671 " (cutoff:3.500A) removed outlier: 4.188A pdb=" N ASP C3676 " --> pdb=" O ARG C3672 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N LEU C3677 " --> pdb=" O MET C3673 " (cutoff:3.500A) removed outlier: 4.881A pdb=" N GLY C3681 " --> pdb=" O LEU C3677 " (cutoff:3.500A) Processing helix chain 'C' and resid 3696 through 3711 removed outlier: 3.572A pdb=" N LEU C3701 " --> pdb=" O PRO C3697 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ARG C3707 " --> pdb=" O LEU C3703 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N ALA C3709 " --> pdb=" O PHE C3705 " (cutoff:3.500A) removed outlier: 4.740A pdb=" N LEU C3710 " --> pdb=" O SER C3706 " (cutoff:3.500A) removed outlier: 4.881A pdb=" N THR C3711 " --> pdb=" O ARG C3707 " (cutoff:3.500A) Processing helix chain 'C' and resid 3719 through 3735 removed outlier: 4.905A pdb=" N MET C3723 " --> pdb=" O ASP C3719 " (cutoff:3.500A) removed outlier: 4.495A pdb=" N ALA C3724 " --> pdb=" O TYR C3720 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N ASP C3727 " --> pdb=" O MET C3723 " (cutoff:3.500A) removed outlier: 5.005A pdb=" N CYS C3733 " --> pdb=" O MET C3729 " (cutoff:3.500A) removed outlier: 4.292A pdb=" N HIS C3734 " --> pdb=" O ALA C3730 " (cutoff:3.500A) removed outlier: 4.894A pdb=" N LEU C3735 " --> pdb=" O LYS C3731 " (cutoff:3.500A) Processing helix chain 'C' and resid 3752 through 3772 removed outlier: 3.983A pdb=" N LYS C3756 " --> pdb=" O SER C3752 " (cutoff:3.500A) removed outlier: 4.137A pdb=" N LEU C3770 " --> pdb=" O GLN C3766 " (cutoff:3.500A) removed outlier: 4.000A pdb=" N THR C3772 " --> pdb=" O SER C3768 " (cutoff:3.500A) Processing helix chain 'C' and resid 3774 through 3787 removed outlier: 4.033A pdb=" N VAL C3779 " --> pdb=" O ALA C3775 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N LEU C3780 " --> pdb=" O ALA C3776 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N GLN C3781 " --> pdb=" O GLU C3777 " (cutoff:3.500A) removed outlier: 4.134A pdb=" N MET C3782 " --> pdb=" O MET C3778 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N ILE C3783 " --> pdb=" O VAL C3779 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N CYS C3786 " --> pdb=" O MET C3782 " (cutoff:3.500A) removed outlier: 3.766A pdb=" N LYS C3787 " --> pdb=" O ILE C3783 " (cutoff:3.500A) Processing helix chain 'C' and resid 3791 through 3806 removed outlier: 4.047A pdb=" N SER C3795 " --> pdb=" O GLY C3791 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N SER C3796 " --> pdb=" O ALA C3792 " (cutoff:3.500A) removed outlier: 4.567A pdb=" N LYS C3799 " --> pdb=" O SER C3795 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N GLY C3801 " --> pdb=" O THR C3797 " (cutoff:3.500A) Processing helix chain 'C' and resid 3809 through 3824 removed outlier: 4.284A pdb=" N GLN C3813 " --> pdb=" O ASN C3809 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N MET C3816 " --> pdb=" O VAL C3812 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N ASP C3818 " --> pdb=" O GLN C3814 " (cutoff:3.500A) removed outlier: 4.112A pdb=" N TYR C3819 " --> pdb=" O LYS C3815 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N LYS C3823 " --> pdb=" O TYR C3819 " (cutoff:3.500A) Processing helix chain 'C' and resid 3826 through 3839 removed outlier: 6.502A pdb=" N GLN C3830 " --> pdb=" O VAL C3826 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N MET C3836 " --> pdb=" O ILE C3832 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N GLN C3837 " --> pdb=" O GLN C3833 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N THR C3838 " --> pdb=" O ALA C3834 " (cutoff:3.500A) removed outlier: 5.105A pdb=" N CYS C3839 " --> pdb=" O LEU C3835 " (cutoff:3.500A) Processing helix chain 'C' and resid 3843 through 3857 removed outlier: 4.148A pdb=" N PHE C3847 " --> pdb=" O ASP C3843 " (cutoff:3.500A) removed outlier: 5.365A pdb=" N GLU C3848 " --> pdb=" O LEU C3844 " (cutoff:3.500A) removed outlier: 4.554A pdb=" N ARG C3849 " --> pdb=" O ASN C3845 " (cutoff:3.500A) removed outlier: 4.797A pdb=" N GLN C3850 " --> pdb=" O ALA C3846 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N LYS C3852 " --> pdb=" O GLU C3848 " (cutoff:3.500A) removed outlier: 4.127A pdb=" N GLY C3855 " --> pdb=" O ASN C3851 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N LEU C3856 " --> pdb=" O LYS C3852 " (cutoff:3.500A) removed outlier: 5.470A pdb=" N GLY C3857 " --> pdb=" O ALA C3853 " (cutoff:3.500A) Processing helix chain 'C' and resid 3866 through 3871 Processing helix chain 'C' and resid 3877 through 3893 removed outlier: 3.643A pdb=" N THR C3881 " --> pdb=" O ASP C3877 " (cutoff:3.500A) removed outlier: 3.974A pdb=" N CYS C3892 " --> pdb=" O LEU C3888 " (cutoff:3.500A) Processing helix chain 'C' and resid 3896 through 3905 removed outlier: 3.838A pdb=" N GLN C3900 " --> pdb=" O ASN C3896 " (cutoff:3.500A) removed outlier: 3.937A pdb=" N ARG C3904 " --> pdb=" O GLN C3900 " (cutoff:3.500A) Processing helix chain 'C' and resid 3914 through 3938 removed outlier: 3.833A pdb=" N CYS C3918 " --> pdb=" O ASN C3914 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ASP C3932 " --> pdb=" O GLU C3928 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N TYR C3937 " --> pdb=" O PHE C3933 " (cutoff:3.500A) Processing helix chain 'C' and resid 3945 through 3970 removed outlier: 3.979A pdb=" N VAL C3957 " --> pdb=" O LYS C3953 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N GLN C3960 " --> pdb=" O SER C3956 " (cutoff:3.500A) removed outlier: 4.365A pdb=" N ASN C3963 " --> pdb=" O LYS C3959 " (cutoff:3.500A) removed outlier: 4.202A pdb=" N LEU C3965 " --> pdb=" O VAL C3961 " (cutoff:3.500A) removed outlier: 4.618A pdb=" N THR C3966 " --> pdb=" O PHE C3962 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N TYR C3968 " --> pdb=" O SER C3964 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N ILE C3969 " --> pdb=" O LEU C3965 " (cutoff:3.500A) Processing helix chain 'C' and resid 3974 through 3983 removed outlier: 3.696A pdb=" N GLN C3978 " --> pdb=" O THR C3974 " (cutoff:3.500A) removed outlier: 4.249A pdb=" N SER C3979 " --> pdb=" O GLY C3975 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N ALA C3981 " --> pdb=" O GLN C3977 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N HIS C3982 " --> pdb=" O GLN C3978 " (cutoff:3.500A) Processing helix chain 'C' and resid 3984 through 4004 removed outlier: 4.431A pdb=" N ALA C3988 " --> pdb=" O ARG C3984 " (cutoff:3.500A) removed outlier: 3.969A pdb=" N VAL C3995 " --> pdb=" O GLY C3991 " (cutoff:3.500A) removed outlier: 4.611A pdb=" N MET C4000 " --> pdb=" O PHE C3996 " (cutoff:3.500A) removed outlier: 4.409A pdb=" N MET C4001 " --> pdb=" O ALA C3997 " (cutoff:3.500A) removed outlier: 4.329A pdb=" N LYS C4002 " --> pdb=" O HIS C3998 " (cutoff:3.500A) removed outlier: 4.079A pdb=" N ALA C4004 " --> pdb=" O MET C4000 " (cutoff:3.500A) Processing helix chain 'C' and resid 4010 through 4032 removed outlier: 4.130A pdb=" N GLU C4015 " --> pdb=" O GLU C4011 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ASP C4022 " --> pdb=" O ASP C4018 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N VAL C4025 " --> pdb=" O LYS C4021 " (cutoff:3.500A) removed outlier: 4.022A pdb=" N LEU C4027 " --> pdb=" O MET C4023 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N SER C4029 " --> pdb=" O VAL C4025 " (cutoff:3.500A) removed outlier: 4.203A pdb=" N LEU C4030 " --> pdb=" O MET C4026 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N LEU C4031 " --> pdb=" O LEU C4027 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N GLU C4032 " --> pdb=" O LEU C4028 " (cutoff:3.500A) Processing helix chain 'C' and resid 4038 through 4052 removed outlier: 3.687A pdb=" N VAL C4045 " --> pdb=" O ALA C4041 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N MET C4047 " --> pdb=" O GLN C4043 " (cutoff:3.500A) removed outlier: 4.807A pdb=" N LEU C4048 " --> pdb=" O MET C4044 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N VAL C4049 " --> pdb=" O VAL C4045 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N SER C4052 " --> pdb=" O LEU C4048 " (cutoff:3.500A) Processing helix chain 'C' and resid 4053 through 4071 removed outlier: 5.450A pdb=" N MET C4057 " --> pdb=" O SER C4053 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N ILE C4058 " --> pdb=" O ASN C4054 " (cutoff:3.500A) removed outlier: 4.100A pdb=" N PHE C4062 " --> pdb=" O ILE C4058 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N ASP C4063 " --> pdb=" O LEU C4059 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N PHE C4065 " --> pdb=" O PHE C4061 " (cutoff:3.500A) removed outlier: 4.104A pdb=" N LEU C4066 " --> pdb=" O PHE C4062 " (cutoff:3.500A) removed outlier: 4.870A pdb=" N LEU C4068 " --> pdb=" O MET C4064 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N LYS C4069 " --> pdb=" O PHE C4065 " (cutoff:3.500A) removed outlier: 4.461A pdb=" N ASP C4070 " --> pdb=" O LEU C4066 " (cutoff:3.500A) Processing helix chain 'C' and resid 4074 through 4080 removed outlier: 3.914A pdb=" N GLN C4078 " --> pdb=" O SER C4074 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ASP C4079 " --> pdb=" O GLU C4075 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N TYR C4080 " --> pdb=" O ALA C4076 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 4074 through 4080' Processing helix chain 'C' and resid 4089 through 4101 removed outlier: 3.545A pdb=" N PHE C4093 " --> pdb=" O SER C4089 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N LYS C4095 " --> pdb=" O LYS C4091 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ALA C4096 " --> pdb=" O ASP C4092 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N SER C4099 " --> pdb=" O LYS C4095 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N GLN C4100 " --> pdb=" O ALA C4096 " (cutoff:3.500A) removed outlier: 5.938A pdb=" N LYS C4101 " --> pdb=" O MET C4097 " (cutoff:3.500A) Processing helix chain 'C' and resid 4107 through 4116 removed outlier: 5.148A pdb=" N LEU C4111 " --> pdb=" O GLU C4107 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N GLU C4116 " --> pdb=" O LEU C4112 " (cutoff:3.500A) Processing helix chain 'C' and resid 4124 through 4137 removed outlier: 3.726A pdb=" N ASN C4130 " --> pdb=" O GLU C4126 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N ARG C4131 " --> pdb=" O GLU C4127 " (cutoff:3.500A) removed outlier: 4.574A pdb=" N PHE C4132 " --> pdb=" O PHE C4128 " (cutoff:3.500A) removed outlier: 4.371A pdb=" N GLN C4133 " --> pdb=" O ALA C4129 " (cutoff:3.500A) removed outlier: 4.199A pdb=" N GLU C4134 " --> pdb=" O ASN C4130 " (cutoff:3.500A) Proline residue: C4135 - end of helix Processing helix chain 'C' and resid 4138 through 4154 removed outlier: 3.801A pdb=" N ASN C4142 " --> pdb=" O ASP C4138 " (cutoff:3.500A) removed outlier: 4.057A pdb=" N LEU C4150 " --> pdb=" O LEU C4146 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N SER C4151 " --> pdb=" O LEU C4147 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N GLU C4152 " --> pdb=" O THR C4148 " (cutoff:3.500A) Processing helix chain 'C' and resid 4157 through 4168 removed outlier: 4.177A pdb=" N ARG C4161 " --> pdb=" O ASP C4157 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ASN C4162 " --> pdb=" O PRO C4158 " (cutoff:3.500A) removed outlier: 4.890A pdb=" N PHE C4163 " --> pdb=" O ARG C4159 " (cutoff:3.500A) removed outlier: 4.735A pdb=" N LEU C4164 " --> pdb=" O LEU C4160 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N GLU C4165 " --> pdb=" O ARG C4161 " (cutoff:3.500A) Processing helix chain 'C' and resid 4169 through 4175 Processing helix chain 'C' and resid 4198 through 4207 removed outlier: 3.773A pdb=" N ALA C4203 " --> pdb=" O GLU C4199 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N GLN C4204 " --> pdb=" O THR C4200 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N TRP C4205 " --> pdb=" O ASN C4201 " (cutoff:3.500A) removed outlier: 4.587A pdb=" N GLU C4206 " --> pdb=" O ARG C4202 " (cutoff:3.500A) removed outlier: 5.498A pdb=" N MET C4207 " --> pdb=" O ALA C4203 " (cutoff:3.500A) Processing helix chain 'C' and resid 4208 through 4224 removed outlier: 4.504A pdb=" N GLU C4212 " --> pdb=" O PRO C4208 " (cutoff:3.500A) removed outlier: 5.101A pdb=" N SER C4213 " --> pdb=" O GLN C4209 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ARG C4215 " --> pdb=" O LYS C4211 " (cutoff:3.500A) removed outlier: 4.371A pdb=" N ASP C4220 " --> pdb=" O GLN C4216 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N VAL C4221 " --> pdb=" O PHE C4217 " (cutoff:3.500A) removed outlier: 4.953A pdb=" N VAL C4222 " --> pdb=" O ILE C4218 " (cutoff:3.500A) removed outlier: 3.873A pdb=" N ASN C4223 " --> pdb=" O PHE C4219 " (cutoff:3.500A) removed outlier: 4.794A pdb=" N GLU C4224 " --> pdb=" O ASP C4220 " (cutoff:3.500A) Processing helix chain 'C' and resid 4229 through 4252 removed outlier: 4.557A pdb=" N LEU C4233 " --> pdb=" O GLU C4229 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N PHE C4234 " --> pdb=" O LYS C4230 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N SER C4236 " --> pdb=" O GLU C4232 " (cutoff:3.500A) Processing helix chain 'C' and resid 4541 through 4559 removed outlier: 4.175A pdb=" N VAL C4546 " --> pdb=" O GLY C4542 " (cutoff:3.500A) removed outlier: 4.189A pdb=" N GLN C4547 " --> pdb=" O GLU C4543 " (cutoff:3.500A) removed outlier: 4.173A pdb=" N VAL C4549 " --> pdb=" O GLU C4545 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N TYR C4554 " --> pdb=" O LYS C4550 " (cutoff:3.500A) removed outlier: 4.343A pdb=" N ASN C4558 " --> pdb=" O TYR C4554 " (cutoff:3.500A) removed outlier: 4.292A pdb=" N PHE C4559 " --> pdb=" O LEU C4555 " (cutoff:3.500A) Processing helix chain 'C' and resid 4560 through 4579 removed outlier: 3.802A pdb=" N ALA C4570 " --> pdb=" O ALA C4566 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N LEU C4578 " --> pdb=" O ASN C4574 " (cutoff:3.500A) removed outlier: 5.101A pdb=" N PHE C4579 " --> pdb=" O PHE C4575 " (cutoff:3.500A) Processing helix chain 'C' and resid 4640 through 4683 removed outlier: 3.941A pdb=" N TRP C4644 " --> pdb=" O GLU C4640 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N CYS C4645 " --> pdb=" O PRO C4641 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N LEU C4648 " --> pdb=" O TRP C4644 " (cutoff:3.500A) removed outlier: 4.901A pdb=" N VAL C4666 " --> pdb=" O ASN C4662 " (cutoff:3.500A) Proline residue: C4667 - end of helix removed outlier: 4.245A pdb=" N LYS C4672 " --> pdb=" O LEU C4668 " (cutoff:3.500A) removed outlier: 5.344A pdb=" N ARG C4673 " --> pdb=" O VAL C4669 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N GLU C4674 " --> pdb=" O ILE C4670 " (cutoff:3.500A) Processing helix chain 'C' and resid 4696 through 4707 removed outlier: 4.769A pdb=" N GLN C4700 " --> pdb=" O ASP C4696 " (cutoff:3.500A) removed outlier: 4.658A pdb=" N TRP C4701 " --> pdb=" O VAL C4697 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N ARG C4703 " --> pdb=" O GLY C4699 " (cutoff:3.500A) removed outlier: 4.834A pdb=" N LEU C4704 " --> pdb=" O GLN C4700 " (cutoff:3.500A) removed outlier: 5.039A pdb=" N VAL C4705 " --> pdb=" O TRP C4701 " (cutoff:3.500A) removed outlier: 4.912A pdb=" N LEU C4706 " --> pdb=" O ASP C4702 " (cutoff:3.500A) removed outlier: 5.354A pdb=" N ASN C4707 " --> pdb=" O ARG C4703 " (cutoff:3.500A) Processing helix chain 'C' and resid 4719 through 4729 removed outlier: 3.586A pdb=" N LYS C4723 " --> pdb=" O PHE C4719 " (cutoff:3.500A) removed outlier: 3.734A pdb=" N VAL C4724 " --> pdb=" O VAL C4720 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N LEU C4725 " --> pdb=" O LYS C4721 " (cutoff:3.500A) Processing helix chain 'C' and resid 4733 through 4742 removed outlier: 3.716A pdb=" N ILE C4737 " --> pdb=" O GLY C4733 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N GLU C4739 " --> pdb=" O GLU C4735 " (cutoff:3.500A) Processing helix chain 'C' and resid 4745 through 4756 removed outlier: 3.739A pdb=" N THR C4751 " --> pdb=" O SER C4747 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N ASN C4754 " --> pdb=" O ILE C4750 " (cutoff:3.500A) Processing helix chain 'C' and resid 4766 through 4772 removed outlier: 4.005A pdb=" N SER C4770 " --> pdb=" O THR C4766 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N ILE C4771 " --> pdb=" O TRP C4767 " (cutoff:3.500A) removed outlier: 5.338A pdb=" N ASP C4772 " --> pdb=" O LEU C4768 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 4766 through 4772' Processing helix chain 'C' and resid 4773 through 4787 removed outlier: 4.389A pdb=" N ILE C4777 " --> pdb=" O VAL C4773 " (cutoff:3.500A) removed outlier: 3.634A pdb=" N VAL C4782 " --> pdb=" O TRP C4778 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N ILE C4783 " --> pdb=" O LYS C4779 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N PHE C4784 " --> pdb=" O PHE C4780 " (cutoff:3.500A) removed outlier: 5.595A pdb=" N ASN C4787 " --> pdb=" O ILE C4783 " (cutoff:3.500A) Processing helix chain 'C' and resid 4788 through 4803 removed outlier: 3.525A pdb=" N MET C4796 " --> pdb=" O LEU C4792 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N MET C4798 " --> pdb=" O TRP C4794 " (cutoff:3.500A) removed outlier: 4.400A pdb=" N SER C4799 " --> pdb=" O TYR C4795 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N LEU C4800 " --> pdb=" O MET C4796 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N LEU C4801 " --> pdb=" O VAL C4797 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N HIS C4803 " --> pdb=" O SER C4799 " (cutoff:3.500A) Processing helix chain 'C' and resid 4808 through 4821 removed outlier: 5.050A pdb=" N HIS C4812 " --> pdb=" O PHE C4808 " (cutoff:3.500A) removed outlier: 4.386A pdb=" N LEU C4813 " --> pdb=" O PHE C4809 " (cutoff:3.500A) removed outlier: 4.471A pdb=" N LEU C4814 " --> pdb=" O ALA C4810 " (cutoff:3.500A) removed outlier: 4.720A pdb=" N ASP C4815 " --> pdb=" O ALA C4811 " (cutoff:3.500A) removed outlier: 5.169A pdb=" N ILE C4816 " --> pdb=" O HIS C4812 " (cutoff:3.500A) removed outlier: 4.971A pdb=" N ALA C4817 " --> pdb=" O LEU C4813 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N MET C4818 " --> pdb=" O LEU C4814 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N VAL C4820 " --> pdb=" O ILE C4816 " (cutoff:3.500A) removed outlier: 5.949A pdb=" N LYS C4821 " --> pdb=" O ALA C4817 " (cutoff:3.500A) Processing helix chain 'C' and resid 4822 through 4833 removed outlier: 4.746A pdb=" N ILE C4826 " --> pdb=" O THR C4822 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N LEU C4827 " --> pdb=" O LEU C4823 " (cutoff:3.500A) removed outlier: 3.949A pdb=" N VAL C4830 " --> pdb=" O ILE C4826 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N THR C4831 " --> pdb=" O LEU C4827 " (cutoff:3.500A) Processing helix chain 'C' and resid 4834 through 4858 removed outlier: 4.632A pdb=" N MET C4839 " --> pdb=" O LYS C4835 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N VAL C4848 " --> pdb=" O LEU C4844 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N TYR C4849 " --> pdb=" O ALA C4845 " (cutoff:3.500A) removed outlier: 4.205A pdb=" N VAL C4853 " --> pdb=" O TYR C4849 " (cutoff:3.500A) removed outlier: 4.501A pdb=" N VAL C4854 " --> pdb=" O LEU C4850 " (cutoff:3.500A) removed outlier: 4.334A pdb=" N ALA C4855 " --> pdb=" O TYR C4851 " (cutoff:3.500A) Processing helix chain 'C' and resid 4878 through 4890 Processing helix chain 'C' and resid 4897 through 4902 removed outlier: 4.221A pdb=" N ILE C4901 " --> pdb=" O ILE C4897 " (cutoff:3.500A) removed outlier: 5.128A pdb=" N GLU C4902 " --> pdb=" O GLY C4898 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 4897 through 4902' Processing helix chain 'C' and resid 4909 through 4924 removed outlier: 3.544A pdb=" N ARG C4913 " --> pdb=" O TYR C4909 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N VAL C4914 " --> pdb=" O GLU C4910 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N VAL C4915 " --> pdb=" O LEU C4911 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N ILE C4918 " --> pdb=" O VAL C4914 " (cutoff:3.500A) removed outlier: 4.111A pdb=" N PHE C4923 " --> pdb=" O THR C4919 " (cutoff:3.500A) Processing helix chain 'C' and resid 4928 through 4956 removed outlier: 3.965A pdb=" N ILE C4932 " --> pdb=" O LEU C4928 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N ILE C4936 " --> pdb=" O ILE C4932 " (cutoff:3.500A) removed outlier: 4.454A pdb=" N ALA C4939 " --> pdb=" O LEU C4935 " (cutoff:3.500A) removed outlier: 3.684A pdb=" N GLU C4948 " --> pdb=" O ARG C4944 " (cutoff:3.500A) removed outlier: 3.819A pdb=" N VAL C4950 " --> pdb=" O GLN C4946 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N LYS C4951 " --> pdb=" O GLN C4947 " (cutoff:3.500A) Processing helix chain 'C' and resid 4973 through 4981 removed outlier: 4.310A pdb=" N THR C4977 " --> pdb=" O HIS C4973 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N HIS C4978 " --> pdb=" O GLY C4974 " (cutoff:3.500A) removed outlier: 4.334A pdb=" N GLU C4981 " --> pdb=" O THR C4977 " (cutoff:3.500A) Processing helix chain 'C' and resid 4984 through 4999 removed outlier: 4.041A pdb=" N TYR C4988 " --> pdb=" O ASN C4984 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N MET C4989 " --> pdb=" O LEU C4985 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N LEU C4995 " --> pdb=" O PHE C4991 " (cutoff:3.500A) removed outlier: 4.263A pdb=" N ILE C4996 " --> pdb=" O LEU C4992 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ASN C4997 " --> pdb=" O MET C4993 " (cutoff:3.500A) removed outlier: 4.437A pdb=" N LYS C4998 " --> pdb=" O TYR C4994 " (cutoff:3.500A) removed outlier: 6.400A pdb=" N ASP C4999 " --> pdb=" O LEU C4995 " (cutoff:3.500A) Processing helix chain 'C' and resid 5004 through 5017 removed outlier: 3.908A pdb=" N TRP C5011 " --> pdb=" O GLU C5007 " (cutoff:3.500A) removed outlier: 4.457A pdb=" N MET C5013 " --> pdb=" O TYR C5009 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N TYR C5014 " --> pdb=" O VAL C5010 " (cutoff:3.500A) removed outlier: 4.433A pdb=" N GLU C5016 " --> pdb=" O LYS C5012 " (cutoff:3.500A) Processing helix chain 'C' and resid 502 through 507 removed outlier: 3.516A pdb=" N GLU C 505 " --> pdb=" O HIS C 502 " (cutoff:3.500A) removed outlier: 4.503A pdb=" N TYR C 506 " --> pdb=" O PHE C 503 " (cutoff:3.500A) removed outlier: 4.337A pdb=" N ALA C 507 " --> pdb=" O ALA C 504 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 502 through 507' Processing helix chain 'C' and resid 810 through 815 removed outlier: 4.329A pdb=" N GLU C 813 " --> pdb=" O PRO C 810 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N ALA C 814 " --> pdb=" O CYS C 811 " (cutoff:3.500A) removed outlier: 5.197A pdb=" N VAL C 815 " --> pdb=" O HIS C 812 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 810 through 815' Processing helix chain 'C' and resid 4966 through 4971 removed outlier: 3.767A pdb=" N ASP C4969 " --> pdb=" O ASP C4966 " (cutoff:3.500A) removed outlier: 4.404A pdb=" N THR C4970 " --> pdb=" O TYR C4967 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N THR C4971 " --> pdb=" O PHE C4968 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 4966 through 4971' Processing helix chain 'C' and resid 5030 through 5035 removed outlier: 4.535A pdb=" N GLU C5033 " --> pdb=" O LYS C5030 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N ASP C5034 " --> pdb=" O GLN C5031 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N GLN C5035 " --> pdb=" O TYR C5032 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 5030 through 5035' Processing helix chain 'C' and resid 4685 through 4690 removed outlier: 3.596A pdb=" N GLU C4690 " --> pdb=" O GLY C4685 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 4685 through 4690' Processing helix chain 'E' and resid 61 through 66 removed outlier: 4.759A pdb=" N CYS E 65 " --> pdb=" O ASP E 61 " (cutoff:3.500A) Processing helix chain 'E' and resid 77 through 84 removed outlier: 4.722A pdb=" N MET E 81 " --> pdb=" O ALA E 77 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N ALA E 83 " --> pdb=" O GLN E 79 " (cutoff:3.500A) Processing helix chain 'E' and resid 249 through 256 removed outlier: 3.848A pdb=" N CYS E 253 " --> pdb=" O GLY E 249 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N THR E 254 " --> pdb=" O GLY E 250 " (cutoff:3.500A) removed outlier: 4.642A pdb=" N HIS E 255 " --> pdb=" O ALA E 251 " (cutoff:3.500A) removed outlier: 5.445A pdb=" N ALA E 256 " --> pdb=" O VAL E 252 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 249 through 256' Processing helix chain 'E' and resid 394 through 423 removed outlier: 4.600A pdb=" N SER E 398 " --> pdb=" O GLN E 394 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N GLN E 399 " --> pdb=" O GLN E 395 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N ALA E 400 " --> pdb=" O GLU E 396 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N HIS E 405 " --> pdb=" O ALA E 401 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N GLN E 413 " --> pdb=" O GLY E 409 " (cutoff:3.500A) removed outlier: 4.171A pdb=" N ASP E 419 " --> pdb=" O ILE E 415 " (cutoff:3.500A) removed outlier: 4.105A pdb=" N SER E 420 " --> pdb=" O LYS E 416 " (cutoff:3.500A) removed outlier: 4.692A pdb=" N PHE E 421 " --> pdb=" O GLY E 417 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N SER E 422 " --> pdb=" O LEU E 418 " (cutoff:3.500A) removed outlier: 4.567A pdb=" N GLY E 423 " --> pdb=" O ASP E 419 " (cutoff:3.500A) Processing helix chain 'E' and resid 437 through 453 removed outlier: 4.186A pdb=" N LEU E 443 " --> pdb=" O GLU E 439 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N SER E 444 " --> pdb=" O ALA E 440 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N LEU E 445 " --> pdb=" O VAL E 441 " (cutoff:3.500A) removed outlier: 4.898A pdb=" N GLN E 446 " --> pdb=" O ILE E 442 " (cutoff:3.500A) removed outlier: 4.680A pdb=" N ASP E 447 " --> pdb=" O LEU E 443 " (cutoff:3.500A) removed outlier: 4.070A pdb=" N LEU E 448 " --> pdb=" O SER E 444 " (cutoff:3.500A) Processing helix chain 'E' and resid 460 through 482 removed outlier: 3.809A pdb=" N GLN E 465 " --> pdb=" O HIS E 461 " (cutoff:3.500A) removed outlier: 4.367A pdb=" N SER E 466 " --> pdb=" O GLU E 462 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LYS E 467 " --> pdb=" O GLU E 463 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N ASN E 473 " --> pdb=" O ARG E 469 " (cutoff:3.500A) removed outlier: 4.045A pdb=" N GLU E 480 " --> pdb=" O SER E 476 " (cutoff:3.500A) removed outlier: 4.555A pdb=" N GLU E 481 " --> pdb=" O LEU E 477 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N GLY E 482 " --> pdb=" O PHE E 478 " (cutoff:3.500A) Processing helix chain 'E' and resid 483 through 495 removed outlier: 5.370A pdb=" N VAL E 487 " --> pdb=" O MET E 483 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N LEU E 488 " --> pdb=" O LEU E 484 " (cutoff:3.500A) removed outlier: 5.526A pdb=" N ARG E 493 " --> pdb=" O ASN E 489 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU E 494 " --> pdb=" O CYS E 490 " (cutoff:3.500A) Processing helix chain 'E' and resid 508 through 531 removed outlier: 3.763A pdb=" N SER E 514 " --> pdb=" O GLU E 510 " (cutoff:3.500A) removed outlier: 5.791A pdb=" N LYS E 516 " --> pdb=" O ALA E 512 " (cutoff:3.500A) removed outlier: 5.638A pdb=" N GLU E 517 " --> pdb=" O GLU E 513 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N ILE E 518 " --> pdb=" O SER E 514 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N VAL E 519 " --> pdb=" O TRP E 515 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N LEU E 521 " --> pdb=" O GLU E 517 " (cutoff:3.500A) removed outlier: 3.733A pdb=" N GLU E 524 " --> pdb=" O ASN E 520 " (cutoff:3.500A) Processing helix chain 'E' and resid 533 through 542 removed outlier: 4.583A pdb=" N CYS E 537 " --> pdb=" O ASN E 533 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N ALA E 538 " --> pdb=" O ARG E 534 " (cutoff:3.500A) removed outlier: 5.429A pdb=" N LEU E 539 " --> pdb=" O ALA E 535 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N PHE E 540 " --> pdb=" O ASN E 536 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N SER E 541 " --> pdb=" O CYS E 537 " (cutoff:3.500A) removed outlier: 4.999A pdb=" N THR E 542 " --> pdb=" O ALA E 538 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 533 through 542' Processing helix chain 'E' and resid 543 through 551 removed outlier: 4.023A pdb=" N VAL E 547 " --> pdb=" O ASN E 543 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N LYS E 550 " --> pdb=" O TRP E 546 " (cutoff:3.500A) removed outlier: 5.397A pdb=" N LEU E 551 " --> pdb=" O VAL E 547 " (cutoff:3.500A) Processing helix chain 'E' and resid 556 through 571 removed outlier: 4.411A pdb=" N ILE E 560 " --> pdb=" O ALA E 556 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N LEU E 561 " --> pdb=" O SER E 557 " (cutoff:3.500A) removed outlier: 4.662A pdb=" N GLU E 562 " --> pdb=" O SER E 558 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N CYS E 566 " --> pdb=" O GLU E 562 " (cutoff:3.500A) removed outlier: 3.955A pdb=" N LEU E 568 " --> pdb=" O LEU E 564 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N ILE E 569 " --> pdb=" O TYR E 565 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N GLU E 570 " --> pdb=" O CYS E 566 " (cutoff:3.500A) removed outlier: 4.434A pdb=" N SER E 571 " --> pdb=" O VAL E 567 " (cutoff:3.500A) Processing helix chain 'E' and resid 579 through 593 removed outlier: 3.765A pdb=" N ILE E 583 " --> pdb=" O GLN E 579 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N LYS E 584 " --> pdb=" O GLU E 580 " (cutoff:3.500A) removed outlier: 5.528A pdb=" N SER E 585 " --> pdb=" O ASN E 581 " (cutoff:3.500A) removed outlier: 4.363A pdb=" N ILE E 586 " --> pdb=" O HIS E 582 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N ILE E 587 " --> pdb=" O ILE E 583 " (cutoff:3.500A) Processing helix chain 'E' and resid 596 through 609 removed outlier: 4.705A pdb=" N LEU E 600 " --> pdb=" O ASN E 596 " (cutoff:3.500A) removed outlier: 4.057A pdb=" N ASP E 601 " --> pdb=" O HIS E 597 " (cutoff:3.500A) removed outlier: 4.278A pdb=" N VAL E 602 " --> pdb=" O LYS E 598 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N LEU E 603 " --> pdb=" O VAL E 599 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N CYS E 607 " --> pdb=" O LEU E 603 " (cutoff:3.500A) removed outlier: 4.372A pdb=" N VAL E 608 " --> pdb=" O CYS E 604 " (cutoff:3.500A) removed outlier: 5.086A pdb=" N CYS E 609 " --> pdb=" O SER E 605 " (cutoff:3.500A) Processing helix chain 'E' and resid 614 through 629 removed outlier: 3.844A pdb=" N GLN E 618 " --> pdb=" O VAL E 614 " (cutoff:3.500A) removed outlier: 4.970A pdb=" N ASP E 619 " --> pdb=" O ARG E 615 " (cutoff:3.500A) removed outlier: 5.872A pdb=" N LEU E 620 " --> pdb=" O SER E 616 " (cutoff:3.500A) removed outlier: 5.004A pdb=" N ILE E 621 " --> pdb=" O ASN E 617 " (cutoff:3.500A) removed outlier: 4.369A pdb=" N THR E 622 " --> pdb=" O GLN E 618 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N ASN E 624 " --> pdb=" O LEU E 620 " (cutoff:3.500A) removed outlier: 4.670A pdb=" N LEU E 626 " --> pdb=" O THR E 622 " (cutoff:3.500A) Proline residue: E 627 - end of helix Processing helix chain 'E' and resid 864 through 890 removed outlier: 4.317A pdb=" N GLU E 868 " --> pdb=" O PRO E 864 " (cutoff:3.500A) removed outlier: 5.668A pdb=" N ARG E 869 " --> pdb=" O PRO E 865 " (cutoff:3.500A) removed outlier: 5.992A pdb=" N ILE E 870 " --> pdb=" O HIS E 866 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N ARG E 871 " --> pdb=" O LEU E 867 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N GLU E 872 " --> pdb=" O GLU E 868 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N ALA E 875 " --> pdb=" O ARG E 871 " (cutoff:3.500A) removed outlier: 3.997A pdb=" N THR E 885 " --> pdb=" O LEU E 881 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N ARG E 886 " --> pdb=" O TRP E 882 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N GLU E 888 " --> pdb=" O LEU E 884 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N GLN E 889 " --> pdb=" O THR E 885 " (cutoff:3.500A) Processing helix chain 'E' and resid 909 through 914 removed outlier: 3.928A pdb=" N LEU E 913 " --> pdb=" O ASN E 909 " (cutoff:3.500A) Proline residue: E 914 - end of helix No H-bonds generated for 'chain 'E' and resid 909 through 914' Processing helix chain 'E' and resid 915 through 936 removed outlier: 3.871A pdb=" N TYR E 920 " --> pdb=" O PRO E 916 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N ASN E 921 " --> pdb=" O GLU E 917 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N LYS E 930 " --> pdb=" O GLY E 926 " (cutoff:3.500A) removed outlier: 4.388A pdb=" N THR E 931 " --> pdb=" O GLU E 927 " (cutoff:3.500A) removed outlier: 4.732A pdb=" N LEU E 932 " --> pdb=" O THR E 928 " (cutoff:3.500A) removed outlier: 5.115A pdb=" N LEU E 933 " --> pdb=" O LEU E 929 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N ALA E 934 " --> pdb=" O LYS E 930 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N LEU E 935 " --> pdb=" O THR E 931 " (cutoff:3.500A) removed outlier: 4.054A pdb=" N GLY E 936 " --> pdb=" O LEU E 932 " (cutoff:3.500A) Processing helix chain 'E' and resid 943 through 951 removed outlier: 4.100A pdb=" N GLU E 947 " --> pdb=" O ASP E 943 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N ASP E 948 " --> pdb=" O GLU E 944 " (cutoff:3.500A) removed outlier: 5.554A pdb=" N LYS E 951 " --> pdb=" O GLU E 947 " (cutoff:3.500A) Processing helix chain 'E' and resid 979 through 1004 removed outlier: 3.871A pdb=" N THR E 983 " --> pdb=" O PRO E 979 " (cutoff:3.500A) removed outlier: 3.879A pdb=" N LEU E 984 " --> pdb=" O ALA E 980 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N ASP E 986 " --> pdb=" O THR E 982 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N ARG E 987 " --> pdb=" O THR E 983 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLU E 990 " --> pdb=" O ASP E 986 " (cutoff:3.500A) removed outlier: 4.551A pdb=" N VAL E 995 " --> pdb=" O ASN E 991 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N TRP E 996 " --> pdb=" O GLY E 992 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N GLY E1004 " --> pdb=" O ARG E1000 " (cutoff:3.500A) Processing helix chain 'E' and resid 1028 through 1050 removed outlier: 3.974A pdb=" N LYS E1032 " --> pdb=" O ASP E1028 " (cutoff:3.500A) removed outlier: 4.590A pdb=" N ARG E1033 " --> pdb=" O GLU E1029 " (cutoff:3.500A) removed outlier: 4.950A pdb=" N SER E1034 " --> pdb=" O ALA E1030 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N SER E1038 " --> pdb=" O SER E1034 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N GLN E1041 " --> pdb=" O ASP E1037 " (cutoff:3.500A) removed outlier: 5.304A pdb=" N ALA E1042 " --> pdb=" O SER E1038 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N VAL E1043 " --> pdb=" O LEU E1039 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N ARG E1044 " --> pdb=" O CYS E1040 " (cutoff:3.500A) removed outlier: 4.572A pdb=" N THR E1045 " --> pdb=" O GLN E1041 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N GLY E1050 " --> pdb=" O LEU E1046 " (cutoff:3.500A) Processing helix chain 'E' and resid 1207 through 1212 removed outlier: 3.942A pdb=" N LEU E1211 " --> pdb=" O ASP E1207 " (cutoff:3.500A) removed outlier: 5.510A pdb=" N ARG E1212 " --> pdb=" O VAL E1208 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1207 through 1212' Processing helix chain 'E' and resid 1213 through 1218 removed outlier: 4.422A pdb=" N CYS E1217 " --> pdb=" O PHE E1213 " (cutoff:3.500A) removed outlier: 4.473A pdb=" N GLY E1218 " --> pdb=" O PHE E1214 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1213 through 1218' Processing helix chain 'E' and resid 1423 through 1431 removed outlier: 4.172A pdb=" N ILE E1427 " --> pdb=" O ASP E1423 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N LEU E1428 " --> pdb=" O PRO E1424 " (cutoff:3.500A) removed outlier: 4.795A pdb=" N ASN E1429 " --> pdb=" O GLU E1425 " (cutoff:3.500A) removed outlier: 4.273A pdb=" N THR E1430 " --> pdb=" O ILE E1426 " (cutoff:3.500A) removed outlier: 5.920A pdb=" N THR E1431 " --> pdb=" O ILE E1427 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1423 through 1431' Processing helix chain 'E' and resid 1444 through 1449 removed outlier: 4.429A pdb=" N VAL E1448 " --> pdb=" O GLU E1444 " (cutoff:3.500A) removed outlier: 6.110A pdb=" N TRP E1449 " --> pdb=" O PRO E1445 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1444 through 1449' Processing helix chain 'E' and resid 1465 through 1470 removed outlier: 4.075A pdb=" N VAL E1469 " --> pdb=" O ASP E1465 " (cutoff:3.500A) removed outlier: 6.861A pdb=" N ARG E1470 " --> pdb=" O LEU E1466 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1465 through 1470' Processing helix chain 'E' and resid 1496 through 1501 removed outlier: 5.047A pdb=" N PHE E1500 " --> pdb=" O TRP E1496 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N VAL E1501 " --> pdb=" O GLY E1497 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1496 through 1501' Processing helix chain 'E' and resid 1574 through 1581 removed outlier: 4.356A pdb=" N ALA E1578 " --> pdb=" O PRO E1574 " (cutoff:3.500A) removed outlier: 4.339A pdb=" N PHE E1580 " --> pdb=" O SER E1576 " (cutoff:3.500A) removed outlier: 5.717A pdb=" N LEU E1581 " --> pdb=" O ALA E1577 " (cutoff:3.500A) Processing helix chain 'E' and resid 1649 through 1657 removed outlier: 4.184A pdb=" N LEU E1653 " --> pdb=" O ASP E1649 " (cutoff:3.500A) removed outlier: 5.144A pdb=" N SER E1654 " --> pdb=" O ILE E1650 " (cutoff:3.500A) removed outlier: 6.200A pdb=" N GLU E1655 " --> pdb=" O LEU E1651 " (cutoff:3.500A) removed outlier: 4.456A pdb=" N ARG E1656 " --> pdb=" O GLU E1652 " (cutoff:3.500A) removed outlier: 5.082A pdb=" N LEU E1657 " --> pdb=" O LEU E1653 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1649 through 1657' Processing helix chain 'E' and resid 1658 through 1675 removed outlier: 3.865A pdb=" N PHE E1662 " --> pdb=" O ASP E1658 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N HIS E1665 " --> pdb=" O ARG E1661 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N LEU E1667 " --> pdb=" O HIS E1663 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N ARG E1668 " --> pdb=" O SER E1664 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N LEU E1669 " --> pdb=" O HIS E1665 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N CYS E1674 " --> pdb=" O TYR E1670 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N ALA E1675 " --> pdb=" O ARG E1671 " (cutoff:3.500A) Processing helix chain 'E' and resid 1678 through 1689 removed outlier: 4.482A pdb=" N ALA E1682 " --> pdb=" O ASN E1678 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N HIS E1683 " --> pdb=" O ASN E1679 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N ALA E1684 " --> pdb=" O ARG E1680 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N CYS E1686 " --> pdb=" O ALA E1682 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N SER E1687 " --> pdb=" O HIS E1683 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N HIS E1688 " --> pdb=" O ALA E1684 " (cutoff:3.500A) Processing helix chain 'E' and resid 1690 through 1700 removed outlier: 3.749A pdb=" N ALA E1697 " --> pdb=" O GLN E1693 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N GLU E1699 " --> pdb=" O LEU E1695 " (cutoff:3.500A) Processing helix chain 'E' and resid 1704 through 1719 removed outlier: 3.839A pdb=" N TYR E1712 " --> pdb=" O ARG E1708 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N HIS E1719 " --> pdb=" O LEU E1715 " (cutoff:3.500A) Processing helix chain 'E' and resid 1720 through 1731 removed outlier: 4.083A pdb=" N CYS E1724 " --> pdb=" O LEU E1720 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N ARG E1725 " --> pdb=" O GLU E1721 " (cutoff:3.500A) removed outlier: 4.859A pdb=" N SER E1726 " --> pdb=" O SER E1722 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N ARG E1727 " --> pdb=" O ALA E1723 " (cutoff:3.500A) removed outlier: 4.188A pdb=" N MET E1730 " --> pdb=" O SER E1726 " (cutoff:3.500A) Processing helix chain 'E' and resid 1739 through 1744 removed outlier: 4.459A pdb=" N ARG E1743 " --> pdb=" O THR E1739 " (cutoff:3.500A) removed outlier: 5.170A pdb=" N ALA E1744 " --> pdb=" O PRO E1740 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 1739 through 1744' Processing helix chain 'E' and resid 1803 through 1825 removed outlier: 4.068A pdb=" N LEU E1807 " --> pdb=" O PRO E1803 " (cutoff:3.500A) removed outlier: 4.846A pdb=" N ASP E1809 " --> pdb=" O GLU E1805 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N LYS E1810 " --> pdb=" O ALA E1806 " (cutoff:3.500A) removed outlier: 4.407A pdb=" N LEU E1812 " --> pdb=" O ARG E1808 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N MET E1814 " --> pdb=" O LYS E1810 " (cutoff:3.500A) removed outlier: 5.202A pdb=" N LEU E1815 " --> pdb=" O ALA E1811 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N ARG E1820 " --> pdb=" O GLY E1816 " (cutoff:3.500A) Processing helix chain 'E' and resid 1833 through 1852 Proline residue: E1840 - end of helix removed outlier: 3.782A pdb=" N THR E1847 " --> pdb=" O LYS E1843 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N LEU E1848 " --> pdb=" O LEU E1844 " (cutoff:3.500A) Processing helix chain 'E' and resid 1855 through 1867 removed outlier: 4.399A pdb=" N VAL E1859 " --> pdb=" O GLY E1855 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N LYS E1860 " --> pdb=" O ASP E1856 " (cutoff:3.500A) removed outlier: 4.002A pdb=" N GLN E1861 " --> pdb=" O GLU E1857 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N ILE E1862 " --> pdb=" O ASP E1858 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLU E1867 " --> pdb=" O LEU E1863 " (cutoff:3.500A) Processing helix chain 'E' and resid 1932 through 1984 removed outlier: 4.263A pdb=" N LYS E1936 " --> pdb=" O PRO E1932 " (cutoff:3.500A) removed outlier: 5.376A pdb=" N LEU E1937 " --> pdb=" O GLU E1933 " (cutoff:3.500A) removed outlier: 6.012A pdb=" N GLN E1938 " --> pdb=" O SER E1934 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N MET E1939 " --> pdb=" O VAL E1935 " (cutoff:3.500A) removed outlier: 3.540A pdb=" N CYS E1940 " --> pdb=" O LYS E1936 " (cutoff:3.500A) removed outlier: 3.714A pdb=" N ARG E1954 " --> pdb=" O GLU E1950 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N VAL E1966 " --> pdb=" O ALA E1962 " (cutoff:3.500A) removed outlier: 5.296A pdb=" N ALA E1971 " --> pdb=" O ASP E1967 " (cutoff:3.500A) removed outlier: 4.336A pdb=" N ASN E1972 " --> pdb=" O LYS E1968 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N ARG E1974 " --> pdb=" O GLN E1970 " (cutoff:3.500A) removed outlier: 4.382A pdb=" N ARG E1982 " --> pdb=" O ALA E1978 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N ALA E1983 " --> pdb=" O LEU E1979 " (cutoff:3.500A) removed outlier: 5.895A pdb=" N PHE E1984 " --> pdb=" O LEU E1980 " (cutoff:3.500A) Processing helix chain 'E' and resid 1987 through 1998 removed outlier: 4.471A pdb=" N THR E1991 " --> pdb=" O SER E1987 " (cutoff:3.500A) removed outlier: 4.468A pdb=" N ALA E1992 " --> pdb=" O ALA E1988 " (cutoff:3.500A) removed outlier: 4.220A pdb=" N ARG E1996 " --> pdb=" O ALA E1992 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N GLU E1997 " --> pdb=" O ARG E1993 " (cutoff:3.500A) Processing helix chain 'E' and resid 2001 through 2011 removed outlier: 4.280A pdb=" N ILE E2006 " --> pdb=" O PRO E2002 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N ASN E2007 " --> pdb=" O GLN E2003 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N LEU E2010 " --> pdb=" O ILE E2006 " (cutoff:3.500A) removed outlier: 4.536A pdb=" N HIS E2011 " --> pdb=" O ASN E2007 " (cutoff:3.500A) Processing helix chain 'E' and resid 2024 through 2043 removed outlier: 4.817A pdb=" N ARG E2028 " --> pdb=" O PRO E2024 " (cutoff:3.500A) removed outlier: 6.389A pdb=" N GLN E2029 " --> pdb=" O GLU E2025 " (cutoff:3.500A) removed outlier: 6.430A pdb=" N ASP E2030 " --> pdb=" O ASP E2026 " (cutoff:3.500A) removed outlier: 5.993A pdb=" N LEU E2031 " --> pdb=" O ILE E2027 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N GLN E2032 " --> pdb=" O ARG E2028 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N GLN E2036 " --> pdb=" O GLN E2032 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N ASP E2037 " --> pdb=" O ASP E2033 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N GLY E2043 " --> pdb=" O LEU E2039 " (cutoff:3.500A) Processing helix chain 'E' and resid 2093 through 2109 removed outlier: 3.625A pdb=" N VAL E2098 " --> pdb=" O LEU E2094 " (cutoff:3.500A) removed outlier: 4.352A pdb=" N SER E2099 " --> pdb=" O GLN E2095 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N HIS E2100 " --> pdb=" O GLU E2096 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N MET E2101 " --> pdb=" O LEU E2097 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N VAL E2102 " --> pdb=" O VAL E2098 " (cutoff:3.500A) removed outlier: 4.529A pdb=" N VAL E2103 " --> pdb=" O SER E2099 " (cutoff:3.500A) removed outlier: 4.084A pdb=" N ARG E2104 " --> pdb=" O HIS E2100 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLU E2108 " --> pdb=" O ARG E2104 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N ASP E2109 " --> pdb=" O TRP E2105 " (cutoff:3.500A) Processing helix chain 'E' and resid 2113 through 2130 removed outlier: 4.255A pdb=" N VAL E2117 " --> pdb=" O SER E2113 " (cutoff:3.500A) removed outlier: 4.194A pdb=" N ARG E2118 " --> pdb=" O PRO E2114 " (cutoff:3.500A) removed outlier: 4.168A pdb=" N PHE E2121 " --> pdb=" O VAL E2117 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N HIS E2125 " --> pdb=" O PHE E2121 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N ARG E2126 " --> pdb=" O SER E2122 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N GLN E2127 " --> pdb=" O LEU E2123 " (cutoff:3.500A) Processing helix chain 'E' and resid 2131 through 2142 Proline residue: E2139 - end of helix removed outlier: 5.551A pdb=" N TYR E2142 " --> pdb=" O LEU E2138 " (cutoff:3.500A) Processing helix chain 'E' and resid 2148 through 2169 removed outlier: 4.645A pdb=" N SER E2154 " --> pdb=" O GLU E2150 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N LEU E2155 " --> pdb=" O ASP E2151 " (cutoff:3.500A) removed outlier: 4.989A pdb=" N ILE E2167 " --> pdb=" O ARG E2163 " (cutoff:3.500A) removed outlier: 4.621A pdb=" N VAL E2168 " --> pdb=" O SER E2164 " (cutoff:3.500A) removed outlier: 5.065A pdb=" N GLN E2169 " --> pdb=" O LEU E2165 " (cutoff:3.500A) Processing helix chain 'E' and resid 2173 through 2189 removed outlier: 5.103A pdb=" N LEU E2177 " --> pdb=" O GLN E2173 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N MET E2178 " --> pdb=" O GLU E2174 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N ILE E2179 " --> pdb=" O GLU E2175 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N SER E2181 " --> pdb=" O LEU E2177 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N MET E2186 " --> pdb=" O ILE E2182 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ASN E2187 " --> pdb=" O GLY E2183 " (cutoff:3.500A) removed outlier: 4.288A pdb=" N ASN E2188 " --> pdb=" O ASN E2184 " (cutoff:3.500A) removed outlier: 5.097A pdb=" N LYS E2189 " --> pdb=" O ILE E2185 " (cutoff:3.500A) Processing helix chain 'E' and resid 2195 through 2202 removed outlier: 4.419A pdb=" N ARG E2199 " --> pdb=" O PRO E2195 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N ALA E2200 " --> pdb=" O ASN E2196 " (cutoff:3.500A) Processing helix chain 'E' and resid 2203 through 2216 removed outlier: 4.780A pdb=" N MET E2208 " --> pdb=" O HIS E2204 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N VAL E2210 " --> pdb=" O THR E2206 " (cutoff:3.500A) removed outlier: 3.976A pdb=" N MET E2211 " --> pdb=" O VAL E2207 " (cutoff:3.500A) removed outlier: 3.672A pdb=" N ASN E2213 " --> pdb=" O GLU E2209 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N VAL E2214 " --> pdb=" O VAL E2210 " (cutoff:3.500A) Processing helix chain 'E' and resid 2225 through 2244 removed outlier: 4.157A pdb=" N VAL E2229 " --> pdb=" O PHE E2225 " (cutoff:3.500A) removed outlier: 4.559A pdb=" N THR E2230 " --> pdb=" O PRO E2226 " (cutoff:3.500A) removed outlier: 3.895A pdb=" N SER E2231 " --> pdb=" O LYS E2227 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N LEU E2236 " --> pdb=" O CYS E2232 " (cutoff:3.500A) removed outlier: 3.714A pdb=" N TYR E2238 " --> pdb=" O ARG E2234 " (cutoff:3.500A) removed outlier: 4.284A pdb=" N ARG E2241 " --> pdb=" O CYS E2237 " (cutoff:3.500A) removed outlier: 3.872A pdb=" N ILE E2242 " --> pdb=" O TYR E2238 " (cutoff:3.500A) removed outlier: 5.023A pdb=" N SER E2243 " --> pdb=" O PHE E2239 " (cutoff:3.500A) removed outlier: 4.886A pdb=" N ARG E2244 " --> pdb=" O CYS E2240 " (cutoff:3.500A) Processing helix chain 'E' and resid 2245 through 2255 removed outlier: 4.460A pdb=" N SER E2249 " --> pdb=" O GLN E2245 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N MET E2250 " --> pdb=" O ASN E2246 " (cutoff:3.500A) removed outlier: 4.614A pdb=" N ASP E2252 " --> pdb=" O ARG E2248 " (cutoff:3.500A) removed outlier: 5.201A pdb=" N HIS E2253 " --> pdb=" O SER E2249 " (cutoff:3.500A) removed outlier: 3.884A pdb=" N LEU E2254 " --> pdb=" O MET E2250 " (cutoff:3.500A) removed outlier: 5.037A pdb=" N SER E2255 " --> pdb=" O PHE E2251 " (cutoff:3.500A) Processing helix chain 'E' and resid 2256 through 2262 removed outlier: 4.038A pdb=" N ASN E2260 " --> pdb=" O TYR E2256 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N SER E2261 " --> pdb=" O LEU E2257 " (cutoff:3.500A) removed outlier: 5.233A pdb=" N GLY E2262 " --> pdb=" O LEU E2258 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 2256 through 2262' Processing helix chain 'E' and resid 2271 through 2282 removed outlier: 4.709A pdb=" N VAL E2275 " --> pdb=" O THR E2271 " (cutoff:3.500A) removed outlier: 3.991A pdb=" N ALA E2276 " --> pdb=" O PRO E2272 " (cutoff:3.500A) removed outlier: 3.926A pdb=" N VAL E2280 " --> pdb=" O ALA E2276 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N ILE E2281 " --> pdb=" O ALA E2277 " (cutoff:3.500A) removed outlier: 6.513A pdb=" N ASP E2282 " --> pdb=" O ALA E2278 " (cutoff:3.500A) Processing helix chain 'E' and resid 2283 through 2290 removed outlier: 3.707A pdb=" N ALA E2287 " --> pdb=" O ASN E2283 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N ALA E2289 " --> pdb=" O GLU E2285 " (cutoff:3.500A) removed outlier: 5.113A pdb=" N LEU E2290 " --> pdb=" O LEU E2286 " (cutoff:3.500A) Processing helix chain 'E' and resid 2291 through 2308 removed outlier: 4.509A pdb=" N LEU E2295 " --> pdb=" O GLN E2291 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N GLU E2296 " --> pdb=" O GLU E2292 " (cutoff:3.500A) removed outlier: 5.054A pdb=" N LYS E2297 " --> pdb=" O GLN E2293 " (cutoff:3.500A) removed outlier: 5.340A pdb=" N VAL E2298 " --> pdb=" O ASP E2294 " (cutoff:3.500A) removed outlier: 3.773A pdb=" N VAL E2299 " --> pdb=" O LEU E2295 " (cutoff:3.500A) removed outlier: 4.383A pdb=" N LEU E2307 " --> pdb=" O ALA E2303 " (cutoff:3.500A) Processing helix chain 'E' and resid 2310 through 2317 removed outlier: 3.745A pdb=" N LEU E2314 " --> pdb=" O CYS E2310 " (cutoff:3.500A) removed outlier: 3.955A pdb=" N ALA E2315 " --> pdb=" O PRO E2311 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N LYS E2316 " --> pdb=" O MET E2312 " (cutoff:3.500A) Processing helix chain 'E' and resid 2324 through 2340 removed outlier: 3.864A pdb=" N GLY E2328 " --> pdb=" O ASN E2324 " (cutoff:3.500A) removed outlier: 4.695A pdb=" N ARG E2330 " --> pdb=" O CYS E2326 " (cutoff:3.500A) removed outlier: 5.198A pdb=" N TYR E2331 " --> pdb=" O GLY E2327 " (cutoff:3.500A) removed outlier: 4.256A pdb=" N LEU E2332 " --> pdb=" O GLY E2328 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N ASP E2333 " --> pdb=" O GLU E2329 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N PHE E2334 " --> pdb=" O ARG E2330 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N LEU E2335 " --> pdb=" O TYR E2331 " (cutoff:3.500A) Processing helix chain 'E' and resid 2346 through 2361 removed outlier: 4.241A pdb=" N ALA E2350 " --> pdb=" O VAL E2346 " (cutoff:3.500A) removed outlier: 4.566A pdb=" N ASN E2351 " --> pdb=" O GLU E2347 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N VAL E2354 " --> pdb=" O ALA E2350 " (cutoff:3.500A) removed outlier: 4.339A pdb=" N ARG E2355 " --> pdb=" O ASN E2351 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ARG E2359 " --> pdb=" O ARG E2355 " (cutoff:3.500A) removed outlier: 4.764A pdb=" N LYS E2360 " --> pdb=" O LEU E2356 " (cutoff:3.500A) Proline residue: E2361 - end of helix Processing helix chain 'E' and resid 2375 through 2390 removed outlier: 3.975A pdb=" N ALA E2379 " --> pdb=" O GLY E2375 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N ILE E2380 " --> pdb=" O LEU E2376 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N GLU E2382 " --> pdb=" O ALA E2378 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ARG E2385 " --> pdb=" O GLU E2381 " (cutoff:3.500A) Proline residue: E2390 - end of helix Processing helix chain 'E' and resid 2417 through 2437 removed outlier: 3.893A pdb=" N ILE E2422 " --> pdb=" O LEU E2418 " (cutoff:3.500A) removed outlier: 5.010A pdb=" N MET E2423 " --> pdb=" O GLY E2419 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N TYR E2426 " --> pdb=" O ILE E2422 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N ASP E2431 " --> pdb=" O ALA E2427 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N LEU E2432 " --> pdb=" O ALA E2428 " (cutoff:3.500A) removed outlier: 3.734A pdb=" N LEU E2433 " --> pdb=" O LEU E2429 " (cutoff:3.500A) removed outlier: 4.297A pdb=" N ALA E2437 " --> pdb=" O LEU E2433 " (cutoff:3.500A) Processing helix chain 'E' and resid 2439 through 2446 removed outlier: 3.708A pdb=" N ILE E2443 " --> pdb=" O GLU E2439 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N GLN E2444 " --> pdb=" O MET E2440 " (cutoff:3.500A) removed outlier: 4.226A pdb=" N ALA E2445 " --> pdb=" O HIS E2441 " (cutoff:3.500A) removed outlier: 5.633A pdb=" N GLY E2446 " --> pdb=" O LEU E2442 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 2439 through 2446' Processing helix chain 'E' and resid 2447 through 2462 removed outlier: 4.618A pdb=" N LEU E2451 " --> pdb=" O LYS E2447 " (cutoff:3.500A) removed outlier: 5.208A pdb=" N ARG E2452 " --> pdb=" O GLY E2448 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N ILE E2453 " --> pdb=" O GLU E2449 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N ARG E2454 " --> pdb=" O ALA E2450 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N VAL E2461 " --> pdb=" O LEU E2457 " (cutoff:3.500A) Proline residue: E2462 - end of helix Processing helix chain 'E' and resid 2463 through 2472 removed outlier: 4.018A pdb=" N VAL E2467 " --> pdb=" O LEU E2463 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N GLY E2468 " --> pdb=" O ASP E2464 " (cutoff:3.500A) removed outlier: 4.142A pdb=" N ILE E2469 " --> pdb=" O ASP E2465 " (cutoff:3.500A) Processing helix chain 'E' and resid 2495 through 2509 removed outlier: 4.348A pdb=" N LYS E2499 " --> pdb=" O VAL E2495 " (cutoff:3.500A) removed outlier: 4.526A pdb=" N SER E2501 " --> pdb=" O ASP E2497 " (cutoff:3.500A) removed outlier: 4.082A pdb=" N MET E2502 " --> pdb=" O HIS E2498 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N VAL E2503 " --> pdb=" O LYS E2499 " (cutoff:3.500A) removed outlier: 4.511A pdb=" N LEU E2504 " --> pdb=" O ALA E2500 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N ARG E2508 " --> pdb=" O LEU E2504 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N VAL E2509 " --> pdb=" O PHE E2505 " (cutoff:3.500A) Processing helix chain 'E' and resid 2514 through 2537 removed outlier: 4.039A pdb=" N LEU E2518 " --> pdb=" O ASN E2514 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N HIS E2520 " --> pdb=" O ASP E2516 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N LEU E2522 " --> pdb=" O LEU E2518 " (cutoff:3.500A) removed outlier: 3.893A pdb=" N ASP E2523 " --> pdb=" O LEU E2519 " (cutoff:3.500A) removed outlier: 4.603A pdb=" N VAL E2524 " --> pdb=" O HIS E2520 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N GLY E2525 " --> pdb=" O VAL E2521 " (cutoff:3.500A) removed outlier: 4.794A pdb=" N PHE E2526 " --> pdb=" O LEU E2522 " (cutoff:3.500A) removed outlier: 5.435A pdb=" N LEU E2527 " --> pdb=" O ASP E2523 " (cutoff:3.500A) Proline residue: E2528 - end of helix removed outlier: 3.504A pdb=" N ALA E2532 " --> pdb=" O PRO E2528 " (cutoff:3.500A) removed outlier: 3.916A pdb=" N LEU E2536 " --> pdb=" O ALA E2532 " (cutoff:3.500A) Processing helix chain 'E' and resid 2544 through 2566 removed outlier: 3.781A pdb=" N LEU E2548 " --> pdb=" O THR E2544 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N TYR E2553 " --> pdb=" O ALA E2549 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N VAL E2558 " --> pdb=" O LEU E2554 " (cutoff:3.500A) removed outlier: 6.491A pdb=" N LEU E2559 " --> pdb=" O CYS E2555 " (cutoff:3.500A) Proline residue: E2560 - end of helix removed outlier: 3.836A pdb=" N LYS E2564 " --> pdb=" O PRO E2560 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N CYS E2565 " --> pdb=" O LEU E2561 " (cutoff:3.500A) Processing helix chain 'E' and resid 2575 through 2591 removed outlier: 5.098A pdb=" N VAL E2579 " --> pdb=" O ARG E2575 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N ASP E2580 " --> pdb=" O ALA E2576 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N TYR E2587 " --> pdb=" O LEU E2583 " (cutoff:3.500A) removed outlier: 4.866A pdb=" N ARG E2591 " --> pdb=" O TYR E2587 " (cutoff:3.500A) Processing helix chain 'E' and resid 2598 through 2614 removed outlier: 5.120A pdb=" N VAL E2602 " --> pdb=" O ALA E2598 " (cutoff:3.500A) removed outlier: 4.678A pdb=" N ILE E2603 " --> pdb=" O GLN E2599 " (cutoff:3.500A) removed outlier: 4.141A pdb=" N MET E2608 " --> pdb=" O GLU E2604 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N ALA E2609 " --> pdb=" O ASP E2605 " (cutoff:3.500A) removed outlier: 4.747A pdb=" N TYR E2613 " --> pdb=" O ALA E2609 " (cutoff:3.500A) removed outlier: 5.051A pdb=" N ILE E2614 " --> pdb=" O LEU E2610 " (cutoff:3.500A) Processing helix chain 'E' and resid 2618 through 2634 removed outlier: 4.874A pdb=" N LEU E2622 " --> pdb=" O MET E2618 " (cutoff:3.500A) removed outlier: 4.667A pdb=" N ARG E2625 " --> pdb=" O HIS E2621 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N VAL E2627 " --> pdb=" O LEU E2623 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N PHE E2628 " --> pdb=" O ARG E2624 " (cutoff:3.500A) removed outlier: 4.368A pdb=" N ASP E2629 " --> pdb=" O ARG E2625 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N VAL E2630 " --> pdb=" O LEU E2626 " (cutoff:3.500A) Proline residue: E2631 - end of helix removed outlier: 4.886A pdb=" N ASN E2634 " --> pdb=" O VAL E2630 " (cutoff:3.500A) Processing helix chain 'E' and resid 2748 through 2774 removed outlier: 3.905A pdb=" N ASP E2752 " --> pdb=" O PRO E2748 " (cutoff:3.500A) removed outlier: 4.148A pdb=" N SER E2753 " --> pdb=" O GLU E2749 " (cutoff:3.500A) removed outlier: 4.033A pdb=" N ASN E2756 " --> pdb=" O ASP E2752 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N GLN E2772 " --> pdb=" O PHE E2768 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N ASN E2773 " --> pdb=" O ASP E2769 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N ASN E2774 " --> pdb=" O LYS E2770 " (cutoff:3.500A) Processing helix chain 'E' and resid 2798 through 2803 removed outlier: 3.595A pdb=" N GLU E2803 " --> pdb=" O GLU E2799 " (cutoff:3.500A) Processing helix chain 'E' and resid 2805 through 2820 removed outlier: 3.717A pdb=" N ILE E2809 " --> pdb=" O TYR E2805 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N SER E2812 " --> pdb=" O PRO E2808 " (cutoff:3.500A) removed outlier: 4.626A pdb=" N LEU E2813 " --> pdb=" O ILE E2809 " (cutoff:3.500A) Processing helix chain 'E' and resid 2868 through 2896 removed outlier: 4.000A pdb=" N ALA E2873 " --> pdb=" O ARG E2869 " (cutoff:3.500A) Processing helix chain 'E' and resid 2913 through 2932 removed outlier: 4.061A pdb=" N ARG E2918 " --> pdb=" O LYS E2914 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N ARG E2920 " --> pdb=" O LYS E2916 " (cutoff:3.500A) removed outlier: 5.047A pdb=" N GLU E2921 " --> pdb=" O ALA E2917 " (cutoff:3.500A) removed outlier: 4.801A pdb=" N LYS E2922 " --> pdb=" O ARG E2918 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N ALA E2923 " --> pdb=" O ASP E2919 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N MET E2932 " --> pdb=" O LYS E2928 " (cutoff:3.500A) Processing helix chain 'E' and resid 3625 through 3638 removed outlier: 4.574A pdb=" N ARG E3629 " --> pdb=" O SER E3625 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N ARG E3630 " --> pdb=" O LYS E3626 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N VAL E3632 " --> pdb=" O ARG E3628 " (cutoff:3.500A) removed outlier: 4.609A pdb=" N VAL E3633 " --> pdb=" O ARG E3629 " (cutoff:3.500A) removed outlier: 3.830A pdb=" N ARG E3637 " --> pdb=" O VAL E3633 " (cutoff:3.500A) Processing helix chain 'E' and resid 3640 through 3645 removed outlier: 3.927A pdb=" N LEU E3644 " --> pdb=" O PRO E3640 " (cutoff:3.500A) Proline residue: E3645 - end of helix No H-bonds generated for 'chain 'E' and resid 3640 through 3645' Processing helix chain 'E' and resid 3646 through 3665 removed outlier: 3.983A pdb=" N ASN E3651 " --> pdb=" O HIS E3647 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N LEU E3654 " --> pdb=" O CYS E3650 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLU E3655 " --> pdb=" O ASN E3651 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N SER E3656 " --> pdb=" O MET E3652 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N ALA E3659 " --> pdb=" O GLU E3655 " (cutoff:3.500A) removed outlier: 3.916A pdb=" N ILE E3662 " --> pdb=" O LYS E3658 " (cutoff:3.500A) removed outlier: 5.142A pdb=" N LEU E3663 " --> pdb=" O ALA E3659 " (cutoff:3.500A) removed outlier: 4.791A pdb=" N THR E3664 " --> pdb=" O ALA E3660 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N GLU E3665 " --> pdb=" O TRP E3661 " (cutoff:3.500A) Processing helix chain 'E' and resid 3668 through 3681 removed outlier: 4.499A pdb=" N ARG E3672 " --> pdb=" O SER E3668 " (cutoff:3.500A) removed outlier: 3.773A pdb=" N MET E3673 " --> pdb=" O PHE E3669 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N ILE E3674 " --> pdb=" O GLU E3670 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N ASP E3675 " --> pdb=" O ASP E3671 " (cutoff:3.500A) removed outlier: 4.189A pdb=" N ASP E3676 " --> pdb=" O ARG E3672 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N LEU E3677 " --> pdb=" O MET E3673 " (cutoff:3.500A) removed outlier: 4.880A pdb=" N GLY E3681 " --> pdb=" O LEU E3677 " (cutoff:3.500A) Processing helix chain 'E' and resid 3696 through 3711 removed outlier: 3.572A pdb=" N LEU E3701 " --> pdb=" O PRO E3697 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ARG E3707 " --> pdb=" O LEU E3703 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N ALA E3709 " --> pdb=" O PHE E3705 " (cutoff:3.500A) removed outlier: 4.741A pdb=" N LEU E3710 " --> pdb=" O SER E3706 " (cutoff:3.500A) removed outlier: 4.881A pdb=" N THR E3711 " --> pdb=" O ARG E3707 " (cutoff:3.500A) Processing helix chain 'E' and resid 3719 through 3735 removed outlier: 4.906A pdb=" N MET E3723 " --> pdb=" O ASP E3719 " (cutoff:3.500A) removed outlier: 4.495A pdb=" N ALA E3724 " --> pdb=" O TYR E3720 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N ASP E3727 " --> pdb=" O MET E3723 " (cutoff:3.500A) removed outlier: 5.005A pdb=" N CYS E3733 " --> pdb=" O MET E3729 " (cutoff:3.500A) removed outlier: 4.292A pdb=" N HIS E3734 " --> pdb=" O ALA E3730 " (cutoff:3.500A) removed outlier: 4.894A pdb=" N LEU E3735 " --> pdb=" O LYS E3731 " (cutoff:3.500A) Processing helix chain 'E' and resid 3752 through 3772 removed outlier: 3.984A pdb=" N LYS E3756 " --> pdb=" O SER E3752 " (cutoff:3.500A) removed outlier: 4.137A pdb=" N LEU E3770 " --> pdb=" O GLN E3766 " (cutoff:3.500A) removed outlier: 4.000A pdb=" N THR E3772 " --> pdb=" O SER E3768 " (cutoff:3.500A) Processing helix chain 'E' and resid 3774 through 3787 removed outlier: 4.033A pdb=" N VAL E3779 " --> pdb=" O ALA E3775 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N LEU E3780 " --> pdb=" O ALA E3776 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N GLN E3781 " --> pdb=" O GLU E3777 " (cutoff:3.500A) removed outlier: 4.134A pdb=" N MET E3782 " --> pdb=" O MET E3778 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N ILE E3783 " --> pdb=" O VAL E3779 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N CYS E3786 " --> pdb=" O MET E3782 " (cutoff:3.500A) removed outlier: 3.766A pdb=" N LYS E3787 " --> pdb=" O ILE E3783 " (cutoff:3.500A) Processing helix chain 'E' and resid 3791 through 3806 removed outlier: 4.046A pdb=" N SER E3795 " --> pdb=" O GLY E3791 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N SER E3796 " --> pdb=" O ALA E3792 " (cutoff:3.500A) removed outlier: 4.566A pdb=" N LYS E3799 " --> pdb=" O SER E3795 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N GLY E3801 " --> pdb=" O THR E3797 " (cutoff:3.500A) Processing helix chain 'E' and resid 3809 through 3824 removed outlier: 4.285A pdb=" N GLN E3813 " --> pdb=" O ASN E3809 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N MET E3816 " --> pdb=" O VAL E3812 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N ASP E3818 " --> pdb=" O GLN E3814 " (cutoff:3.500A) removed outlier: 4.111A pdb=" N TYR E3819 " --> pdb=" O LYS E3815 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N LYS E3823 " --> pdb=" O TYR E3819 " (cutoff:3.500A) Processing helix chain 'E' and resid 3826 through 3839 removed outlier: 6.502A pdb=" N GLN E3830 " --> pdb=" O VAL E3826 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N MET E3836 " --> pdb=" O ILE E3832 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N GLN E3837 " --> pdb=" O GLN E3833 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N THR E3838 " --> pdb=" O ALA E3834 " (cutoff:3.500A) removed outlier: 5.105A pdb=" N CYS E3839 " --> pdb=" O LEU E3835 " (cutoff:3.500A) Processing helix chain 'E' and resid 3843 through 3857 removed outlier: 4.147A pdb=" N PHE E3847 " --> pdb=" O ASP E3843 " (cutoff:3.500A) removed outlier: 5.365A pdb=" N GLU E3848 " --> pdb=" O LEU E3844 " (cutoff:3.500A) removed outlier: 4.553A pdb=" N ARG E3849 " --> pdb=" O ASN E3845 " (cutoff:3.500A) removed outlier: 4.797A pdb=" N GLN E3850 " --> pdb=" O ALA E3846 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N LYS E3852 " --> pdb=" O GLU E3848 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N GLY E3855 " --> pdb=" O ASN E3851 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N LEU E3856 " --> pdb=" O LYS E3852 " (cutoff:3.500A) removed outlier: 5.470A pdb=" N GLY E3857 " --> pdb=" O ALA E3853 " (cutoff:3.500A) Processing helix chain 'E' and resid 3866 through 3871 Processing helix chain 'E' and resid 3877 through 3893 removed outlier: 3.644A pdb=" N THR E3881 " --> pdb=" O ASP E3877 " (cutoff:3.500A) removed outlier: 3.974A pdb=" N CYS E3892 " --> pdb=" O LEU E3888 " (cutoff:3.500A) Processing helix chain 'E' and resid 3896 through 3905 removed outlier: 3.838A pdb=" N GLN E3900 " --> pdb=" O ASN E3896 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N ARG E3904 " --> pdb=" O GLN E3900 " (cutoff:3.500A) Processing helix chain 'E' and resid 3914 through 3938 removed outlier: 3.833A pdb=" N CYS E3918 " --> pdb=" O ASN E3914 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ASP E3932 " --> pdb=" O GLU E3928 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N TYR E3937 " --> pdb=" O PHE E3933 " (cutoff:3.500A) Processing helix chain 'E' and resid 3945 through 3970 removed outlier: 3.979A pdb=" N VAL E3957 " --> pdb=" O LYS E3953 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N GLN E3960 " --> pdb=" O SER E3956 " (cutoff:3.500A) removed outlier: 4.364A pdb=" N ASN E3963 " --> pdb=" O LYS E3959 " (cutoff:3.500A) removed outlier: 4.202A pdb=" N LEU E3965 " --> pdb=" O VAL E3961 " (cutoff:3.500A) removed outlier: 4.618A pdb=" N THR E3966 " --> pdb=" O PHE E3962 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N TYR E3968 " --> pdb=" O SER E3964 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N ILE E3969 " --> pdb=" O LEU E3965 " (cutoff:3.500A) Processing helix chain 'E' and resid 3974 through 3983 removed outlier: 3.697A pdb=" N GLN E3978 " --> pdb=" O THR E3974 " (cutoff:3.500A) removed outlier: 4.249A pdb=" N SER E3979 " --> pdb=" O GLY E3975 " (cutoff:3.500A) removed outlier: 3.664A pdb=" N ALA E3981 " --> pdb=" O GLN E3977 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N HIS E3982 " --> pdb=" O GLN E3978 " (cutoff:3.500A) Processing helix chain 'E' and resid 3984 through 4004 removed outlier: 4.431A pdb=" N ALA E3988 " --> pdb=" O ARG E3984 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N VAL E3995 " --> pdb=" O GLY E3991 " (cutoff:3.500A) removed outlier: 4.611A pdb=" N MET E4000 " --> pdb=" O PHE E3996 " (cutoff:3.500A) removed outlier: 4.409A pdb=" N MET E4001 " --> pdb=" O ALA E3997 " (cutoff:3.500A) removed outlier: 4.329A pdb=" N LYS E4002 " --> pdb=" O HIS E3998 " (cutoff:3.500A) removed outlier: 4.079A pdb=" N ALA E4004 " --> pdb=" O MET E4000 " (cutoff:3.500A) Processing helix chain 'E' and resid 4010 through 4032 removed outlier: 4.130A pdb=" N GLU E4015 " --> pdb=" O GLU E4011 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ASP E4022 " --> pdb=" O ASP E4018 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N VAL E4025 " --> pdb=" O LYS E4021 " (cutoff:3.500A) removed outlier: 4.022A pdb=" N LEU E4027 " --> pdb=" O MET E4023 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N SER E4029 " --> pdb=" O VAL E4025 " (cutoff:3.500A) removed outlier: 4.203A pdb=" N LEU E4030 " --> pdb=" O MET E4026 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N LEU E4031 " --> pdb=" O LEU E4027 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N GLU E4032 " --> pdb=" O LEU E4028 " (cutoff:3.500A) Processing helix chain 'E' and resid 4038 through 4052 removed outlier: 3.686A pdb=" N VAL E4045 " --> pdb=" O ALA E4041 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N MET E4047 " --> pdb=" O GLN E4043 " (cutoff:3.500A) removed outlier: 4.808A pdb=" N LEU E4048 " --> pdb=" O MET E4044 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N VAL E4049 " --> pdb=" O VAL E4045 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N SER E4052 " --> pdb=" O LEU E4048 " (cutoff:3.500A) Processing helix chain 'E' and resid 4053 through 4071 removed outlier: 5.450A pdb=" N MET E4057 " --> pdb=" O SER E4053 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N ILE E4058 " --> pdb=" O ASN E4054 " (cutoff:3.500A) removed outlier: 4.100A pdb=" N PHE E4062 " --> pdb=" O ILE E4058 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N ASP E4063 " --> pdb=" O LEU E4059 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N PHE E4065 " --> pdb=" O PHE E4061 " (cutoff:3.500A) removed outlier: 4.105A pdb=" N LEU E4066 " --> pdb=" O PHE E4062 " (cutoff:3.500A) removed outlier: 4.870A pdb=" N LEU E4068 " --> pdb=" O MET E4064 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N LYS E4069 " --> pdb=" O PHE E4065 " (cutoff:3.500A) removed outlier: 4.461A pdb=" N ASP E4070 " --> pdb=" O LEU E4066 " (cutoff:3.500A) Processing helix chain 'E' and resid 4074 through 4080 removed outlier: 3.913A pdb=" N GLN E4078 " --> pdb=" O SER E4074 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ASP E4079 " --> pdb=" O GLU E4075 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N TYR E4080 " --> pdb=" O ALA E4076 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4074 through 4080' Processing helix chain 'E' and resid 4089 through 4101 removed outlier: 3.544A pdb=" N PHE E4093 " --> pdb=" O SER E4089 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N LYS E4095 " --> pdb=" O LYS E4091 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ALA E4096 " --> pdb=" O ASP E4092 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N SER E4099 " --> pdb=" O LYS E4095 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N GLN E4100 " --> pdb=" O ALA E4096 " (cutoff:3.500A) removed outlier: 5.938A pdb=" N LYS E4101 " --> pdb=" O MET E4097 " (cutoff:3.500A) Processing helix chain 'E' and resid 4107 through 4116 removed outlier: 5.148A pdb=" N LEU E4111 " --> pdb=" O GLU E4107 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N GLU E4116 " --> pdb=" O LEU E4112 " (cutoff:3.500A) Processing helix chain 'E' and resid 4124 through 4137 removed outlier: 3.725A pdb=" N ASN E4130 " --> pdb=" O GLU E4126 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N ARG E4131 " --> pdb=" O GLU E4127 " (cutoff:3.500A) removed outlier: 4.574A pdb=" N PHE E4132 " --> pdb=" O PHE E4128 " (cutoff:3.500A) removed outlier: 4.371A pdb=" N GLN E4133 " --> pdb=" O ALA E4129 " (cutoff:3.500A) removed outlier: 4.198A pdb=" N GLU E4134 " --> pdb=" O ASN E4130 " (cutoff:3.500A) Proline residue: E4135 - end of helix Processing helix chain 'E' and resid 4138 through 4154 removed outlier: 3.802A pdb=" N ASN E4142 " --> pdb=" O ASP E4138 " (cutoff:3.500A) removed outlier: 4.057A pdb=" N LEU E4150 " --> pdb=" O LEU E4146 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N SER E4151 " --> pdb=" O LEU E4147 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N GLU E4152 " --> pdb=" O THR E4148 " (cutoff:3.500A) Processing helix chain 'E' and resid 4157 through 4168 removed outlier: 4.176A pdb=" N ARG E4161 " --> pdb=" O ASP E4157 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ASN E4162 " --> pdb=" O PRO E4158 " (cutoff:3.500A) removed outlier: 4.890A pdb=" N PHE E4163 " --> pdb=" O ARG E4159 " (cutoff:3.500A) removed outlier: 4.736A pdb=" N LEU E4164 " --> pdb=" O LEU E4160 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N GLU E4165 " --> pdb=" O ARG E4161 " (cutoff:3.500A) Processing helix chain 'E' and resid 4169 through 4175 Processing helix chain 'E' and resid 4198 through 4207 removed outlier: 3.772A pdb=" N ALA E4203 " --> pdb=" O GLU E4199 " (cutoff:3.500A) removed outlier: 4.263A pdb=" N GLN E4204 " --> pdb=" O THR E4200 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N TRP E4205 " --> pdb=" O ASN E4201 " (cutoff:3.500A) removed outlier: 4.587A pdb=" N GLU E4206 " --> pdb=" O ARG E4202 " (cutoff:3.500A) removed outlier: 5.499A pdb=" N MET E4207 " --> pdb=" O ALA E4203 " (cutoff:3.500A) Processing helix chain 'E' and resid 4208 through 4224 removed outlier: 4.504A pdb=" N GLU E4212 " --> pdb=" O PRO E4208 " (cutoff:3.500A) removed outlier: 5.101A pdb=" N SER E4213 " --> pdb=" O GLN E4209 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ARG E4215 " --> pdb=" O LYS E4211 " (cutoff:3.500A) removed outlier: 4.371A pdb=" N ASP E4220 " --> pdb=" O GLN E4216 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N VAL E4221 " --> pdb=" O PHE E4217 " (cutoff:3.500A) removed outlier: 4.953A pdb=" N VAL E4222 " --> pdb=" O ILE E4218 " (cutoff:3.500A) removed outlier: 3.874A pdb=" N ASN E4223 " --> pdb=" O PHE E4219 " (cutoff:3.500A) removed outlier: 4.793A pdb=" N GLU E4224 " --> pdb=" O ASP E4220 " (cutoff:3.500A) Processing helix chain 'E' and resid 4229 through 4252 removed outlier: 4.556A pdb=" N LEU E4233 " --> pdb=" O GLU E4229 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N PHE E4234 " --> pdb=" O LYS E4230 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N SER E4236 " --> pdb=" O GLU E4232 " (cutoff:3.500A) Processing helix chain 'E' and resid 4541 through 4559 removed outlier: 4.175A pdb=" N VAL E4546 " --> pdb=" O GLY E4542 " (cutoff:3.500A) removed outlier: 4.190A pdb=" N GLN E4547 " --> pdb=" O GLU E4543 " (cutoff:3.500A) removed outlier: 4.174A pdb=" N VAL E4549 " --> pdb=" O GLU E4545 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N TYR E4554 " --> pdb=" O LYS E4550 " (cutoff:3.500A) removed outlier: 4.343A pdb=" N ASN E4558 " --> pdb=" O TYR E4554 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N PHE E4559 " --> pdb=" O LEU E4555 " (cutoff:3.500A) Processing helix chain 'E' and resid 4560 through 4579 removed outlier: 3.802A pdb=" N ALA E4570 " --> pdb=" O ALA E4566 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N LEU E4578 " --> pdb=" O ASN E4574 " (cutoff:3.500A) removed outlier: 5.101A pdb=" N PHE E4579 " --> pdb=" O PHE E4575 " (cutoff:3.500A) Processing helix chain 'E' and resid 4640 through 4683 removed outlier: 3.941A pdb=" N TRP E4644 " --> pdb=" O GLU E4640 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N CYS E4645 " --> pdb=" O PRO E4641 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N LEU E4648 " --> pdb=" O TRP E4644 " (cutoff:3.500A) removed outlier: 4.901A pdb=" N VAL E4666 " --> pdb=" O ASN E4662 " (cutoff:3.500A) Proline residue: E4667 - end of helix removed outlier: 4.245A pdb=" N LYS E4672 " --> pdb=" O LEU E4668 " (cutoff:3.500A) removed outlier: 5.344A pdb=" N ARG E4673 " --> pdb=" O VAL E4669 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N GLU E4674 " --> pdb=" O ILE E4670 " (cutoff:3.500A) Processing helix chain 'E' and resid 4696 through 4707 removed outlier: 4.769A pdb=" N GLN E4700 " --> pdb=" O ASP E4696 " (cutoff:3.500A) removed outlier: 4.658A pdb=" N TRP E4701 " --> pdb=" O VAL E4697 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N ARG E4703 " --> pdb=" O GLY E4699 " (cutoff:3.500A) removed outlier: 4.834A pdb=" N LEU E4704 " --> pdb=" O GLN E4700 " (cutoff:3.500A) removed outlier: 5.039A pdb=" N VAL E4705 " --> pdb=" O TRP E4701 " (cutoff:3.500A) removed outlier: 4.912A pdb=" N LEU E4706 " --> pdb=" O ASP E4702 " (cutoff:3.500A) removed outlier: 5.354A pdb=" N ASN E4707 " --> pdb=" O ARG E4703 " (cutoff:3.500A) Processing helix chain 'E' and resid 4719 through 4729 removed outlier: 3.585A pdb=" N LYS E4723 " --> pdb=" O PHE E4719 " (cutoff:3.500A) removed outlier: 3.734A pdb=" N VAL E4724 " --> pdb=" O VAL E4720 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N LEU E4725 " --> pdb=" O LYS E4721 " (cutoff:3.500A) Processing helix chain 'E' and resid 4733 through 4742 removed outlier: 3.716A pdb=" N ILE E4737 " --> pdb=" O GLY E4733 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N GLU E4739 " --> pdb=" O GLU E4735 " (cutoff:3.500A) Processing helix chain 'E' and resid 4745 through 4756 removed outlier: 3.738A pdb=" N THR E4751 " --> pdb=" O SER E4747 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N ASN E4754 " --> pdb=" O ILE E4750 " (cutoff:3.500A) Processing helix chain 'E' and resid 4766 through 4772 removed outlier: 4.005A pdb=" N SER E4770 " --> pdb=" O THR E4766 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N ILE E4771 " --> pdb=" O TRP E4767 " (cutoff:3.500A) removed outlier: 5.339A pdb=" N ASP E4772 " --> pdb=" O LEU E4768 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4766 through 4772' Processing helix chain 'E' and resid 4773 through 4787 removed outlier: 4.389A pdb=" N ILE E4777 " --> pdb=" O VAL E4773 " (cutoff:3.500A) removed outlier: 3.633A pdb=" N VAL E4782 " --> pdb=" O TRP E4778 " (cutoff:3.500A) removed outlier: 3.933A pdb=" N ILE E4783 " --> pdb=" O LYS E4779 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N PHE E4784 " --> pdb=" O PHE E4780 " (cutoff:3.500A) removed outlier: 5.594A pdb=" N ASN E4787 " --> pdb=" O ILE E4783 " (cutoff:3.500A) Processing helix chain 'E' and resid 4788 through 4803 removed outlier: 3.525A pdb=" N MET E4796 " --> pdb=" O LEU E4792 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N MET E4798 " --> pdb=" O TRP E4794 " (cutoff:3.500A) removed outlier: 4.400A pdb=" N SER E4799 " --> pdb=" O TYR E4795 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N LEU E4800 " --> pdb=" O MET E4796 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N LEU E4801 " --> pdb=" O VAL E4797 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N HIS E4803 " --> pdb=" O SER E4799 " (cutoff:3.500A) Processing helix chain 'E' and resid 4808 through 4821 removed outlier: 5.049A pdb=" N HIS E4812 " --> pdb=" O PHE E4808 " (cutoff:3.500A) removed outlier: 4.386A pdb=" N LEU E4813 " --> pdb=" O PHE E4809 " (cutoff:3.500A) removed outlier: 4.471A pdb=" N LEU E4814 " --> pdb=" O ALA E4810 " (cutoff:3.500A) removed outlier: 4.721A pdb=" N ASP E4815 " --> pdb=" O ALA E4811 " (cutoff:3.500A) removed outlier: 5.169A pdb=" N ILE E4816 " --> pdb=" O HIS E4812 " (cutoff:3.500A) removed outlier: 4.971A pdb=" N ALA E4817 " --> pdb=" O LEU E4813 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N MET E4818 " --> pdb=" O LEU E4814 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N VAL E4820 " --> pdb=" O ILE E4816 " (cutoff:3.500A) removed outlier: 5.949A pdb=" N LYS E4821 " --> pdb=" O ALA E4817 " (cutoff:3.500A) Processing helix chain 'E' and resid 4822 through 4833 removed outlier: 4.746A pdb=" N ILE E4826 " --> pdb=" O THR E4822 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N LEU E4827 " --> pdb=" O LEU E4823 " (cutoff:3.500A) removed outlier: 3.949A pdb=" N VAL E4830 " --> pdb=" O ILE E4826 " (cutoff:3.500A) removed outlier: 4.290A pdb=" N THR E4831 " --> pdb=" O LEU E4827 " (cutoff:3.500A) Processing helix chain 'E' and resid 4834 through 4858 removed outlier: 4.632A pdb=" N MET E4839 " --> pdb=" O LYS E4835 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N VAL E4848 " --> pdb=" O LEU E4844 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N TYR E4849 " --> pdb=" O ALA E4845 " (cutoff:3.500A) removed outlier: 4.205A pdb=" N VAL E4853 " --> pdb=" O TYR E4849 " (cutoff:3.500A) removed outlier: 4.501A pdb=" N VAL E4854 " --> pdb=" O LEU E4850 " (cutoff:3.500A) removed outlier: 4.334A pdb=" N ALA E4855 " --> pdb=" O TYR E4851 " (cutoff:3.500A) Processing helix chain 'E' and resid 4878 through 4890 Processing helix chain 'E' and resid 4897 through 4902 removed outlier: 4.221A pdb=" N ILE E4901 " --> pdb=" O ILE E4897 " (cutoff:3.500A) removed outlier: 5.128A pdb=" N GLU E4902 " --> pdb=" O GLY E4898 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4897 through 4902' Processing helix chain 'E' and resid 4909 through 4924 removed outlier: 3.544A pdb=" N ARG E4913 " --> pdb=" O TYR E4909 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N VAL E4914 " --> pdb=" O GLU E4910 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N VAL E4915 " --> pdb=" O LEU E4911 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N ILE E4918 " --> pdb=" O VAL E4914 " (cutoff:3.500A) removed outlier: 4.111A pdb=" N PHE E4923 " --> pdb=" O THR E4919 " (cutoff:3.500A) Processing helix chain 'E' and resid 4928 through 4956 removed outlier: 3.964A pdb=" N ILE E4932 " --> pdb=" O LEU E4928 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N ILE E4936 " --> pdb=" O ILE E4932 " (cutoff:3.500A) removed outlier: 4.455A pdb=" N ALA E4939 " --> pdb=" O LEU E4935 " (cutoff:3.500A) removed outlier: 3.683A pdb=" N GLU E4948 " --> pdb=" O ARG E4944 " (cutoff:3.500A) removed outlier: 3.819A pdb=" N VAL E4950 " --> pdb=" O GLN E4946 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N LYS E4951 " --> pdb=" O GLN E4947 " (cutoff:3.500A) Processing helix chain 'E' and resid 4973 through 4981 removed outlier: 4.311A pdb=" N THR E4977 " --> pdb=" O HIS E4973 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N HIS E4978 " --> pdb=" O GLY E4974 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N GLU E4981 " --> pdb=" O THR E4977 " (cutoff:3.500A) Processing helix chain 'E' and resid 4984 through 4999 removed outlier: 4.040A pdb=" N TYR E4988 " --> pdb=" O ASN E4984 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N MET E4989 " --> pdb=" O LEU E4985 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N LEU E4995 " --> pdb=" O PHE E4991 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N ILE E4996 " --> pdb=" O LEU E4992 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ASN E4997 " --> pdb=" O MET E4993 " (cutoff:3.500A) removed outlier: 4.437A pdb=" N LYS E4998 " --> pdb=" O TYR E4994 " (cutoff:3.500A) removed outlier: 6.401A pdb=" N ASP E4999 " --> pdb=" O LEU E4995 " (cutoff:3.500A) Processing helix chain 'E' and resid 5004 through 5017 removed outlier: 3.908A pdb=" N TRP E5011 " --> pdb=" O GLU E5007 " (cutoff:3.500A) removed outlier: 4.457A pdb=" N MET E5013 " --> pdb=" O TYR E5009 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N TYR E5014 " --> pdb=" O VAL E5010 " (cutoff:3.500A) removed outlier: 4.432A pdb=" N GLU E5016 " --> pdb=" O LYS E5012 " (cutoff:3.500A) Processing helix chain 'E' and resid 502 through 507 removed outlier: 3.517A pdb=" N GLU E 505 " --> pdb=" O HIS E 502 " (cutoff:3.500A) removed outlier: 4.502A pdb=" N TYR E 506 " --> pdb=" O PHE E 503 " (cutoff:3.500A) removed outlier: 4.336A pdb=" N ALA E 507 " --> pdb=" O ALA E 504 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 502 through 507' Processing helix chain 'E' and resid 810 through 815 removed outlier: 4.329A pdb=" N GLU E 813 " --> pdb=" O PRO E 810 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N ALA E 814 " --> pdb=" O CYS E 811 " (cutoff:3.500A) removed outlier: 5.198A pdb=" N VAL E 815 " --> pdb=" O HIS E 812 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 810 through 815' Processing helix chain 'E' and resid 4966 through 4971 removed outlier: 3.766A pdb=" N ASP E4969 " --> pdb=" O ASP E4966 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N THR E4970 " --> pdb=" O TYR E4967 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N THR E4971 " --> pdb=" O PHE E4968 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4966 through 4971' Processing helix chain 'E' and resid 5030 through 5035 removed outlier: 4.535A pdb=" N GLU E5033 " --> pdb=" O LYS E5030 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N ASP E5034 " --> pdb=" O GLN E5031 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N GLN E5035 " --> pdb=" O TYR E5032 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 5030 through 5035' Processing helix chain 'E' and resid 4685 through 4690 removed outlier: 3.595A pdb=" N GLU E4690 " --> pdb=" O GLY E4685 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 4685 through 4690' Processing helix chain 'G' and resid 61 through 66 removed outlier: 4.758A pdb=" N CYS G 65 " --> pdb=" O ASP G 61 " (cutoff:3.500A) Processing helix chain 'G' and resid 77 through 84 removed outlier: 4.722A pdb=" N MET G 81 " --> pdb=" O ALA G 77 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N ALA G 83 " --> pdb=" O GLN G 79 " (cutoff:3.500A) Processing helix chain 'G' and resid 249 through 256 removed outlier: 3.848A pdb=" N CYS G 253 " --> pdb=" O GLY G 249 " (cutoff:3.500A) removed outlier: 3.914A pdb=" N THR G 254 " --> pdb=" O GLY G 250 " (cutoff:3.500A) removed outlier: 4.642A pdb=" N HIS G 255 " --> pdb=" O ALA G 251 " (cutoff:3.500A) removed outlier: 5.444A pdb=" N ALA G 256 " --> pdb=" O VAL G 252 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 249 through 256' Processing helix chain 'G' and resid 394 through 423 removed outlier: 4.600A pdb=" N SER G 398 " --> pdb=" O GLN G 394 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N GLN G 399 " --> pdb=" O GLN G 395 " (cutoff:3.500A) removed outlier: 4.751A pdb=" N ALA G 400 " --> pdb=" O GLU G 396 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N HIS G 405 " --> pdb=" O ALA G 401 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N GLN G 413 " --> pdb=" O GLY G 409 " (cutoff:3.500A) removed outlier: 4.171A pdb=" N ASP G 419 " --> pdb=" O ILE G 415 " (cutoff:3.500A) removed outlier: 4.105A pdb=" N SER G 420 " --> pdb=" O LYS G 416 " (cutoff:3.500A) removed outlier: 4.692A pdb=" N PHE G 421 " --> pdb=" O GLY G 417 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N SER G 422 " --> pdb=" O LEU G 418 " (cutoff:3.500A) removed outlier: 4.568A pdb=" N GLY G 423 " --> pdb=" O ASP G 419 " (cutoff:3.500A) Processing helix chain 'G' and resid 437 through 453 removed outlier: 4.186A pdb=" N LEU G 443 " --> pdb=" O GLU G 439 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N SER G 444 " --> pdb=" O ALA G 440 " (cutoff:3.500A) removed outlier: 4.623A pdb=" N LEU G 445 " --> pdb=" O VAL G 441 " (cutoff:3.500A) removed outlier: 4.898A pdb=" N GLN G 446 " --> pdb=" O ILE G 442 " (cutoff:3.500A) removed outlier: 4.680A pdb=" N ASP G 447 " --> pdb=" O LEU G 443 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N LEU G 448 " --> pdb=" O SER G 444 " (cutoff:3.500A) Processing helix chain 'G' and resid 460 through 482 removed outlier: 3.809A pdb=" N GLN G 465 " --> pdb=" O HIS G 461 " (cutoff:3.500A) removed outlier: 4.367A pdb=" N SER G 466 " --> pdb=" O GLU G 462 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N LYS G 467 " --> pdb=" O GLU G 463 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N ASN G 473 " --> pdb=" O ARG G 469 " (cutoff:3.500A) removed outlier: 4.046A pdb=" N GLU G 480 " --> pdb=" O SER G 476 " (cutoff:3.500A) removed outlier: 4.555A pdb=" N GLU G 481 " --> pdb=" O LEU G 477 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N GLY G 482 " --> pdb=" O PHE G 478 " (cutoff:3.500A) Processing helix chain 'G' and resid 483 through 495 removed outlier: 5.370A pdb=" N VAL G 487 " --> pdb=" O MET G 483 " (cutoff:3.500A) removed outlier: 4.749A pdb=" N LEU G 488 " --> pdb=" O LEU G 484 " (cutoff:3.500A) removed outlier: 5.526A pdb=" N ARG G 493 " --> pdb=" O ASN G 489 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N LEU G 494 " --> pdb=" O CYS G 490 " (cutoff:3.500A) Processing helix chain 'G' and resid 508 through 531 removed outlier: 3.764A pdb=" N SER G 514 " --> pdb=" O GLU G 510 " (cutoff:3.500A) removed outlier: 5.791A pdb=" N LYS G 516 " --> pdb=" O ALA G 512 " (cutoff:3.500A) removed outlier: 5.638A pdb=" N GLU G 517 " --> pdb=" O GLU G 513 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N ILE G 518 " --> pdb=" O SER G 514 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N VAL G 519 " --> pdb=" O TRP G 515 " (cutoff:3.500A) removed outlier: 4.166A pdb=" N LEU G 521 " --> pdb=" O GLU G 517 " (cutoff:3.500A) removed outlier: 3.733A pdb=" N GLU G 524 " --> pdb=" O ASN G 520 " (cutoff:3.500A) Processing helix chain 'G' and resid 533 through 542 removed outlier: 4.583A pdb=" N CYS G 537 " --> pdb=" O ASN G 533 " (cutoff:3.500A) removed outlier: 4.617A pdb=" N ALA G 538 " --> pdb=" O ARG G 534 " (cutoff:3.500A) removed outlier: 5.430A pdb=" N LEU G 539 " --> pdb=" O ALA G 535 " (cutoff:3.500A) removed outlier: 4.431A pdb=" N PHE G 540 " --> pdb=" O ASN G 536 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N SER G 541 " --> pdb=" O CYS G 537 " (cutoff:3.500A) removed outlier: 4.998A pdb=" N THR G 542 " --> pdb=" O ALA G 538 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 533 through 542' Processing helix chain 'G' and resid 543 through 551 removed outlier: 4.023A pdb=" N VAL G 547 " --> pdb=" O ASN G 543 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N LYS G 550 " --> pdb=" O TRP G 546 " (cutoff:3.500A) removed outlier: 5.397A pdb=" N LEU G 551 " --> pdb=" O VAL G 547 " (cutoff:3.500A) Processing helix chain 'G' and resid 556 through 571 removed outlier: 4.411A pdb=" N ILE G 560 " --> pdb=" O ALA G 556 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N LEU G 561 " --> pdb=" O SER G 557 " (cutoff:3.500A) removed outlier: 4.663A pdb=" N GLU G 562 " --> pdb=" O SER G 558 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N CYS G 566 " --> pdb=" O GLU G 562 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N LEU G 568 " --> pdb=" O LEU G 564 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N ILE G 569 " --> pdb=" O TYR G 565 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N GLU G 570 " --> pdb=" O CYS G 566 " (cutoff:3.500A) removed outlier: 4.434A pdb=" N SER G 571 " --> pdb=" O VAL G 567 " (cutoff:3.500A) Processing helix chain 'G' and resid 579 through 593 removed outlier: 3.765A pdb=" N ILE G 583 " --> pdb=" O GLN G 579 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N LYS G 584 " --> pdb=" O GLU G 580 " (cutoff:3.500A) removed outlier: 5.528A pdb=" N SER G 585 " --> pdb=" O ASN G 581 " (cutoff:3.500A) removed outlier: 4.362A pdb=" N ILE G 586 " --> pdb=" O HIS G 582 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N ILE G 587 " --> pdb=" O ILE G 583 " (cutoff:3.500A) Processing helix chain 'G' and resid 596 through 609 removed outlier: 4.705A pdb=" N LEU G 600 " --> pdb=" O ASN G 596 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N ASP G 601 " --> pdb=" O HIS G 597 " (cutoff:3.500A) removed outlier: 4.278A pdb=" N VAL G 602 " --> pdb=" O LYS G 598 " (cutoff:3.500A) removed outlier: 4.487A pdb=" N LEU G 603 " --> pdb=" O VAL G 599 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N CYS G 607 " --> pdb=" O LEU G 603 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N VAL G 608 " --> pdb=" O CYS G 604 " (cutoff:3.500A) removed outlier: 5.086A pdb=" N CYS G 609 " --> pdb=" O SER G 605 " (cutoff:3.500A) Processing helix chain 'G' and resid 614 through 629 removed outlier: 3.845A pdb=" N GLN G 618 " --> pdb=" O VAL G 614 " (cutoff:3.500A) removed outlier: 4.971A pdb=" N ASP G 619 " --> pdb=" O ARG G 615 " (cutoff:3.500A) removed outlier: 5.873A pdb=" N LEU G 620 " --> pdb=" O SER G 616 " (cutoff:3.500A) removed outlier: 5.003A pdb=" N ILE G 621 " --> pdb=" O ASN G 617 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N THR G 622 " --> pdb=" O GLN G 618 " (cutoff:3.500A) removed outlier: 3.973A pdb=" N ASN G 624 " --> pdb=" O LEU G 620 " (cutoff:3.500A) removed outlier: 4.671A pdb=" N LEU G 626 " --> pdb=" O THR G 622 " (cutoff:3.500A) Proline residue: G 627 - end of helix Processing helix chain 'G' and resid 864 through 890 removed outlier: 4.318A pdb=" N GLU G 868 " --> pdb=" O PRO G 864 " (cutoff:3.500A) removed outlier: 5.668A pdb=" N ARG G 869 " --> pdb=" O PRO G 865 " (cutoff:3.500A) removed outlier: 5.992A pdb=" N ILE G 870 " --> pdb=" O HIS G 866 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N ARG G 871 " --> pdb=" O LEU G 867 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N GLU G 872 " --> pdb=" O GLU G 868 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N ALA G 875 " --> pdb=" O ARG G 871 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N THR G 885 " --> pdb=" O LEU G 881 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N ARG G 886 " --> pdb=" O TRP G 882 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N GLU G 888 " --> pdb=" O LEU G 884 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N GLN G 889 " --> pdb=" O THR G 885 " (cutoff:3.500A) Processing helix chain 'G' and resid 909 through 914 removed outlier: 3.928A pdb=" N LEU G 913 " --> pdb=" O ASN G 909 " (cutoff:3.500A) Proline residue: G 914 - end of helix No H-bonds generated for 'chain 'G' and resid 909 through 914' Processing helix chain 'G' and resid 915 through 936 removed outlier: 3.870A pdb=" N TYR G 920 " --> pdb=" O PRO G 916 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ASN G 921 " --> pdb=" O GLU G 917 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N LYS G 930 " --> pdb=" O GLY G 926 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N THR G 931 " --> pdb=" O GLU G 927 " (cutoff:3.500A) removed outlier: 4.732A pdb=" N LEU G 932 " --> pdb=" O THR G 928 " (cutoff:3.500A) removed outlier: 5.114A pdb=" N LEU G 933 " --> pdb=" O LEU G 929 " (cutoff:3.500A) removed outlier: 4.334A pdb=" N ALA G 934 " --> pdb=" O LYS G 930 " (cutoff:3.500A) removed outlier: 4.490A pdb=" N LEU G 935 " --> pdb=" O THR G 931 " (cutoff:3.500A) removed outlier: 4.055A pdb=" N GLY G 936 " --> pdb=" O LEU G 932 " (cutoff:3.500A) Processing helix chain 'G' and resid 943 through 951 removed outlier: 4.100A pdb=" N GLU G 947 " --> pdb=" O ASP G 943 " (cutoff:3.500A) removed outlier: 4.027A pdb=" N ASP G 948 " --> pdb=" O GLU G 944 " (cutoff:3.500A) removed outlier: 5.554A pdb=" N LYS G 951 " --> pdb=" O GLU G 947 " (cutoff:3.500A) Processing helix chain 'G' and resid 979 through 1004 removed outlier: 3.871A pdb=" N THR G 983 " --> pdb=" O PRO G 979 " (cutoff:3.500A) removed outlier: 3.879A pdb=" N LEU G 984 " --> pdb=" O ALA G 980 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N ASP G 986 " --> pdb=" O THR G 982 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N ARG G 987 " --> pdb=" O THR G 983 " (cutoff:3.500A) removed outlier: 4.268A pdb=" N GLU G 990 " --> pdb=" O ASP G 986 " (cutoff:3.500A) removed outlier: 4.551A pdb=" N VAL G 995 " --> pdb=" O ASN G 991 " (cutoff:3.500A) removed outlier: 4.094A pdb=" N TRP G 996 " --> pdb=" O GLY G 992 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N GLY G1004 " --> pdb=" O ARG G1000 " (cutoff:3.500A) Processing helix chain 'G' and resid 1028 through 1050 removed outlier: 3.974A pdb=" N LYS G1032 " --> pdb=" O ASP G1028 " (cutoff:3.500A) removed outlier: 4.590A pdb=" N ARG G1033 " --> pdb=" O GLU G1029 " (cutoff:3.500A) removed outlier: 4.949A pdb=" N SER G1034 " --> pdb=" O ALA G1030 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N SER G1038 " --> pdb=" O SER G1034 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N GLN G1041 " --> pdb=" O ASP G1037 " (cutoff:3.500A) removed outlier: 5.304A pdb=" N ALA G1042 " --> pdb=" O SER G1038 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N VAL G1043 " --> pdb=" O LEU G1039 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N ARG G1044 " --> pdb=" O CYS G1040 " (cutoff:3.500A) removed outlier: 4.571A pdb=" N THR G1045 " --> pdb=" O GLN G1041 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N GLY G1050 " --> pdb=" O LEU G1046 " (cutoff:3.500A) Processing helix chain 'G' and resid 1207 through 1212 removed outlier: 3.943A pdb=" N LEU G1211 " --> pdb=" O ASP G1207 " (cutoff:3.500A) removed outlier: 5.510A pdb=" N ARG G1212 " --> pdb=" O VAL G1208 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1207 through 1212' Processing helix chain 'G' and resid 1213 through 1218 removed outlier: 4.421A pdb=" N CYS G1217 " --> pdb=" O PHE G1213 " (cutoff:3.500A) removed outlier: 4.473A pdb=" N GLY G1218 " --> pdb=" O PHE G1214 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1213 through 1218' Processing helix chain 'G' and resid 1423 through 1431 removed outlier: 4.172A pdb=" N ILE G1427 " --> pdb=" O ASP G1423 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N LEU G1428 " --> pdb=" O PRO G1424 " (cutoff:3.500A) removed outlier: 4.795A pdb=" N ASN G1429 " --> pdb=" O GLU G1425 " (cutoff:3.500A) removed outlier: 4.274A pdb=" N THR G1430 " --> pdb=" O ILE G1426 " (cutoff:3.500A) removed outlier: 5.919A pdb=" N THR G1431 " --> pdb=" O ILE G1427 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1423 through 1431' Processing helix chain 'G' and resid 1444 through 1449 removed outlier: 4.429A pdb=" N VAL G1448 " --> pdb=" O GLU G1444 " (cutoff:3.500A) removed outlier: 6.110A pdb=" N TRP G1449 " --> pdb=" O PRO G1445 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1444 through 1449' Processing helix chain 'G' and resid 1465 through 1470 removed outlier: 4.075A pdb=" N VAL G1469 " --> pdb=" O ASP G1465 " (cutoff:3.500A) removed outlier: 6.862A pdb=" N ARG G1470 " --> pdb=" O LEU G1466 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1465 through 1470' Processing helix chain 'G' and resid 1496 through 1501 removed outlier: 5.047A pdb=" N PHE G1500 " --> pdb=" O TRP G1496 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N VAL G1501 " --> pdb=" O GLY G1497 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1496 through 1501' Processing helix chain 'G' and resid 1574 through 1581 removed outlier: 4.356A pdb=" N ALA G1578 " --> pdb=" O PRO G1574 " (cutoff:3.500A) removed outlier: 4.339A pdb=" N PHE G1580 " --> pdb=" O SER G1576 " (cutoff:3.500A) removed outlier: 5.717A pdb=" N LEU G1581 " --> pdb=" O ALA G1577 " (cutoff:3.500A) Processing helix chain 'G' and resid 1649 through 1657 removed outlier: 4.183A pdb=" N LEU G1653 " --> pdb=" O ASP G1649 " (cutoff:3.500A) removed outlier: 5.144A pdb=" N SER G1654 " --> pdb=" O ILE G1650 " (cutoff:3.500A) removed outlier: 6.200A pdb=" N GLU G1655 " --> pdb=" O LEU G1651 " (cutoff:3.500A) removed outlier: 4.455A pdb=" N ARG G1656 " --> pdb=" O GLU G1652 " (cutoff:3.500A) removed outlier: 5.081A pdb=" N LEU G1657 " --> pdb=" O LEU G1653 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1649 through 1657' Processing helix chain 'G' and resid 1658 through 1675 removed outlier: 3.864A pdb=" N PHE G1662 " --> pdb=" O ASP G1658 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N HIS G1665 " --> pdb=" O ARG G1661 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N LEU G1667 " --> pdb=" O HIS G1663 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N ARG G1668 " --> pdb=" O SER G1664 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N LEU G1669 " --> pdb=" O HIS G1665 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N CYS G1674 " --> pdb=" O TYR G1670 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N ALA G1675 " --> pdb=" O ARG G1671 " (cutoff:3.500A) Processing helix chain 'G' and resid 1678 through 1689 removed outlier: 4.482A pdb=" N ALA G1682 " --> pdb=" O ASN G1678 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N HIS G1683 " --> pdb=" O ASN G1679 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N ALA G1684 " --> pdb=" O ARG G1680 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N CYS G1686 " --> pdb=" O ALA G1682 " (cutoff:3.500A) removed outlier: 3.957A pdb=" N SER G1687 " --> pdb=" O HIS G1683 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N HIS G1688 " --> pdb=" O ALA G1684 " (cutoff:3.500A) Processing helix chain 'G' and resid 1690 through 1700 removed outlier: 3.749A pdb=" N ALA G1697 " --> pdb=" O GLN G1693 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N GLU G1699 " --> pdb=" O LEU G1695 " (cutoff:3.500A) Processing helix chain 'G' and resid 1704 through 1719 removed outlier: 3.839A pdb=" N TYR G1712 " --> pdb=" O ARG G1708 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N HIS G1719 " --> pdb=" O LEU G1715 " (cutoff:3.500A) Processing helix chain 'G' and resid 1720 through 1731 removed outlier: 4.082A pdb=" N CYS G1724 " --> pdb=" O LEU G1720 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N ARG G1725 " --> pdb=" O GLU G1721 " (cutoff:3.500A) removed outlier: 4.860A pdb=" N SER G1726 " --> pdb=" O SER G1722 " (cutoff:3.500A) removed outlier: 4.095A pdb=" N ARG G1727 " --> pdb=" O ALA G1723 " (cutoff:3.500A) removed outlier: 4.189A pdb=" N MET G1730 " --> pdb=" O SER G1726 " (cutoff:3.500A) Processing helix chain 'G' and resid 1739 through 1744 removed outlier: 4.459A pdb=" N ARG G1743 " --> pdb=" O THR G1739 " (cutoff:3.500A) removed outlier: 5.170A pdb=" N ALA G1744 " --> pdb=" O PRO G1740 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 1739 through 1744' Processing helix chain 'G' and resid 1803 through 1825 removed outlier: 4.068A pdb=" N LEU G1807 " --> pdb=" O PRO G1803 " (cutoff:3.500A) removed outlier: 4.846A pdb=" N ASP G1809 " --> pdb=" O GLU G1805 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N LYS G1810 " --> pdb=" O ALA G1806 " (cutoff:3.500A) removed outlier: 4.407A pdb=" N LEU G1812 " --> pdb=" O ARG G1808 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N MET G1814 " --> pdb=" O LYS G1810 " (cutoff:3.500A) removed outlier: 5.203A pdb=" N LEU G1815 " --> pdb=" O ALA G1811 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N ARG G1820 " --> pdb=" O GLY G1816 " (cutoff:3.500A) Processing helix chain 'G' and resid 1833 through 1852 Proline residue: G1840 - end of helix removed outlier: 3.782A pdb=" N THR G1847 " --> pdb=" O LYS G1843 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N LEU G1848 " --> pdb=" O LEU G1844 " (cutoff:3.500A) Processing helix chain 'G' and resid 1855 through 1867 removed outlier: 4.400A pdb=" N VAL G1859 " --> pdb=" O GLY G1855 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N LYS G1860 " --> pdb=" O ASP G1856 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N GLN G1861 " --> pdb=" O GLU G1857 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N ILE G1862 " --> pdb=" O ASP G1858 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLU G1867 " --> pdb=" O LEU G1863 " (cutoff:3.500A) Processing helix chain 'G' and resid 1932 through 1984 removed outlier: 4.263A pdb=" N LYS G1936 " --> pdb=" O PRO G1932 " (cutoff:3.500A) removed outlier: 5.377A pdb=" N LEU G1937 " --> pdb=" O GLU G1933 " (cutoff:3.500A) removed outlier: 6.013A pdb=" N GLN G1938 " --> pdb=" O SER G1934 " (cutoff:3.500A) removed outlier: 4.414A pdb=" N MET G1939 " --> pdb=" O VAL G1935 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N CYS G1940 " --> pdb=" O LYS G1936 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ARG G1954 " --> pdb=" O GLU G1950 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N VAL G1966 " --> pdb=" O ALA G1962 " (cutoff:3.500A) removed outlier: 5.296A pdb=" N ALA G1971 " --> pdb=" O ASP G1967 " (cutoff:3.500A) removed outlier: 4.336A pdb=" N ASN G1972 " --> pdb=" O LYS G1968 " (cutoff:3.500A) removed outlier: 3.834A pdb=" N ARG G1974 " --> pdb=" O GLN G1970 " (cutoff:3.500A) removed outlier: 4.382A pdb=" N ARG G1982 " --> pdb=" O ALA G1978 " (cutoff:3.500A) removed outlier: 4.077A pdb=" N ALA G1983 " --> pdb=" O LEU G1979 " (cutoff:3.500A) removed outlier: 5.895A pdb=" N PHE G1984 " --> pdb=" O LEU G1980 " (cutoff:3.500A) Processing helix chain 'G' and resid 1987 through 1998 removed outlier: 4.471A pdb=" N THR G1991 " --> pdb=" O SER G1987 " (cutoff:3.500A) removed outlier: 4.468A pdb=" N ALA G1992 " --> pdb=" O ALA G1988 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N ARG G1996 " --> pdb=" O ALA G1992 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N GLU G1997 " --> pdb=" O ARG G1993 " (cutoff:3.500A) Processing helix chain 'G' and resid 2001 through 2011 removed outlier: 4.280A pdb=" N ILE G2006 " --> pdb=" O PRO G2002 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N ASN G2007 " --> pdb=" O GLN G2003 " (cutoff:3.500A) removed outlier: 3.998A pdb=" N LEU G2010 " --> pdb=" O ILE G2006 " (cutoff:3.500A) removed outlier: 4.536A pdb=" N HIS G2011 " --> pdb=" O ASN G2007 " (cutoff:3.500A) Processing helix chain 'G' and resid 2024 through 2043 removed outlier: 4.817A pdb=" N ARG G2028 " --> pdb=" O PRO G2024 " (cutoff:3.500A) removed outlier: 6.389A pdb=" N GLN G2029 " --> pdb=" O GLU G2025 " (cutoff:3.500A) removed outlier: 6.430A pdb=" N ASP G2030 " --> pdb=" O ASP G2026 " (cutoff:3.500A) removed outlier: 5.992A pdb=" N LEU G2031 " --> pdb=" O ILE G2027 " (cutoff:3.500A) removed outlier: 4.073A pdb=" N GLN G2032 " --> pdb=" O ARG G2028 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N GLN G2036 " --> pdb=" O GLN G2032 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N ASP G2037 " --> pdb=" O ASP G2033 " (cutoff:3.500A) removed outlier: 4.074A pdb=" N GLY G2043 " --> pdb=" O LEU G2039 " (cutoff:3.500A) Processing helix chain 'G' and resid 2093 through 2109 removed outlier: 3.623A pdb=" N VAL G2098 " --> pdb=" O LEU G2094 " (cutoff:3.500A) removed outlier: 4.352A pdb=" N SER G2099 " --> pdb=" O GLN G2095 " (cutoff:3.500A) removed outlier: 4.196A pdb=" N HIS G2100 " --> pdb=" O GLU G2096 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N MET G2101 " --> pdb=" O LEU G2097 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N VAL G2102 " --> pdb=" O VAL G2098 " (cutoff:3.500A) removed outlier: 4.528A pdb=" N VAL G2103 " --> pdb=" O SER G2099 " (cutoff:3.500A) removed outlier: 4.084A pdb=" N ARG G2104 " --> pdb=" O HIS G2100 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLU G2108 " --> pdb=" O ARG G2104 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N ASP G2109 " --> pdb=" O TRP G2105 " (cutoff:3.500A) Processing helix chain 'G' and resid 2113 through 2130 removed outlier: 4.255A pdb=" N VAL G2117 " --> pdb=" O SER G2113 " (cutoff:3.500A) removed outlier: 4.194A pdb=" N ARG G2118 " --> pdb=" O PRO G2114 " (cutoff:3.500A) removed outlier: 4.168A pdb=" N PHE G2121 " --> pdb=" O VAL G2117 " (cutoff:3.500A) removed outlier: 4.138A pdb=" N HIS G2125 " --> pdb=" O PHE G2121 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N ARG G2126 " --> pdb=" O SER G2122 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N GLN G2127 " --> pdb=" O LEU G2123 " (cutoff:3.500A) Processing helix chain 'G' and resid 2131 through 2142 Proline residue: G2139 - end of helix removed outlier: 5.552A pdb=" N TYR G2142 " --> pdb=" O LEU G2138 " (cutoff:3.500A) Processing helix chain 'G' and resid 2148 through 2169 removed outlier: 4.645A pdb=" N SER G2154 " --> pdb=" O GLU G2150 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N LEU G2155 " --> pdb=" O ASP G2151 " (cutoff:3.500A) removed outlier: 4.989A pdb=" N ILE G2167 " --> pdb=" O ARG G2163 " (cutoff:3.500A) removed outlier: 4.621A pdb=" N VAL G2168 " --> pdb=" O SER G2164 " (cutoff:3.500A) removed outlier: 5.065A pdb=" N GLN G2169 " --> pdb=" O LEU G2165 " (cutoff:3.500A) Processing helix chain 'G' and resid 2173 through 2189 removed outlier: 5.104A pdb=" N LEU G2177 " --> pdb=" O GLN G2173 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N MET G2178 " --> pdb=" O GLU G2174 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N ILE G2179 " --> pdb=" O GLU G2175 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N SER G2181 " --> pdb=" O LEU G2177 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N MET G2186 " --> pdb=" O ILE G2182 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N ASN G2187 " --> pdb=" O GLY G2183 " (cutoff:3.500A) removed outlier: 4.289A pdb=" N ASN G2188 " --> pdb=" O ASN G2184 " (cutoff:3.500A) removed outlier: 5.097A pdb=" N LYS G2189 " --> pdb=" O ILE G2185 " (cutoff:3.500A) Processing helix chain 'G' and resid 2195 through 2202 removed outlier: 4.420A pdb=" N ARG G2199 " --> pdb=" O PRO G2195 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ALA G2200 " --> pdb=" O ASN G2196 " (cutoff:3.500A) Processing helix chain 'G' and resid 2203 through 2216 removed outlier: 4.780A pdb=" N MET G2208 " --> pdb=" O HIS G2204 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N VAL G2210 " --> pdb=" O THR G2206 " (cutoff:3.500A) removed outlier: 3.976A pdb=" N MET G2211 " --> pdb=" O VAL G2207 " (cutoff:3.500A) removed outlier: 3.672A pdb=" N ASN G2213 " --> pdb=" O GLU G2209 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N VAL G2214 " --> pdb=" O VAL G2210 " (cutoff:3.500A) Processing helix chain 'G' and resid 2225 through 2244 removed outlier: 4.157A pdb=" N VAL G2229 " --> pdb=" O PHE G2225 " (cutoff:3.500A) removed outlier: 4.559A pdb=" N THR G2230 " --> pdb=" O PRO G2226 " (cutoff:3.500A) removed outlier: 3.894A pdb=" N SER G2231 " --> pdb=" O LYS G2227 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N LEU G2236 " --> pdb=" O CYS G2232 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N TYR G2238 " --> pdb=" O ARG G2234 " (cutoff:3.500A) removed outlier: 4.283A pdb=" N ARG G2241 " --> pdb=" O CYS G2237 " (cutoff:3.500A) removed outlier: 3.872A pdb=" N ILE G2242 " --> pdb=" O TYR G2238 " (cutoff:3.500A) removed outlier: 5.022A pdb=" N SER G2243 " --> pdb=" O PHE G2239 " (cutoff:3.500A) removed outlier: 4.886A pdb=" N ARG G2244 " --> pdb=" O CYS G2240 " (cutoff:3.500A) Processing helix chain 'G' and resid 2245 through 2255 removed outlier: 4.460A pdb=" N SER G2249 " --> pdb=" O GLN G2245 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N MET G2250 " --> pdb=" O ASN G2246 " (cutoff:3.500A) removed outlier: 4.614A pdb=" N ASP G2252 " --> pdb=" O ARG G2248 " (cutoff:3.500A) removed outlier: 5.200A pdb=" N HIS G2253 " --> pdb=" O SER G2249 " (cutoff:3.500A) removed outlier: 3.884A pdb=" N LEU G2254 " --> pdb=" O MET G2250 " (cutoff:3.500A) removed outlier: 5.037A pdb=" N SER G2255 " --> pdb=" O PHE G2251 " (cutoff:3.500A) Processing helix chain 'G' and resid 2256 through 2262 removed outlier: 4.038A pdb=" N ASN G2260 " --> pdb=" O TYR G2256 " (cutoff:3.500A) removed outlier: 4.956A pdb=" N SER G2261 " --> pdb=" O LEU G2257 " (cutoff:3.500A) removed outlier: 5.233A pdb=" N GLY G2262 " --> pdb=" O LEU G2258 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 2256 through 2262' Processing helix chain 'G' and resid 2271 through 2282 removed outlier: 4.709A pdb=" N VAL G2275 " --> pdb=" O THR G2271 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N ALA G2276 " --> pdb=" O PRO G2272 " (cutoff:3.500A) removed outlier: 3.926A pdb=" N VAL G2280 " --> pdb=" O ALA G2276 " (cutoff:3.500A) removed outlier: 4.071A pdb=" N ILE G2281 " --> pdb=" O ALA G2277 " (cutoff:3.500A) removed outlier: 6.513A pdb=" N ASP G2282 " --> pdb=" O ALA G2278 " (cutoff:3.500A) Processing helix chain 'G' and resid 2283 through 2290 removed outlier: 3.707A pdb=" N ALA G2287 " --> pdb=" O ASN G2283 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N ALA G2289 " --> pdb=" O GLU G2285 " (cutoff:3.500A) removed outlier: 5.112A pdb=" N LEU G2290 " --> pdb=" O LEU G2286 " (cutoff:3.500A) Processing helix chain 'G' and resid 2291 through 2308 removed outlier: 4.510A pdb=" N LEU G2295 " --> pdb=" O GLN G2291 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N GLU G2296 " --> pdb=" O GLU G2292 " (cutoff:3.500A) removed outlier: 5.054A pdb=" N LYS G2297 " --> pdb=" O GLN G2293 " (cutoff:3.500A) removed outlier: 5.340A pdb=" N VAL G2298 " --> pdb=" O ASP G2294 " (cutoff:3.500A) removed outlier: 3.773A pdb=" N VAL G2299 " --> pdb=" O LEU G2295 " (cutoff:3.500A) removed outlier: 4.384A pdb=" N LEU G2307 " --> pdb=" O ALA G2303 " (cutoff:3.500A) Processing helix chain 'G' and resid 2310 through 2317 removed outlier: 3.745A pdb=" N LEU G2314 " --> pdb=" O CYS G2310 " (cutoff:3.500A) removed outlier: 3.955A pdb=" N ALA G2315 " --> pdb=" O PRO G2311 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N LYS G2316 " --> pdb=" O MET G2312 " (cutoff:3.500A) Processing helix chain 'G' and resid 2324 through 2340 removed outlier: 3.864A pdb=" N GLY G2328 " --> pdb=" O ASN G2324 " (cutoff:3.500A) removed outlier: 4.695A pdb=" N ARG G2330 " --> pdb=" O CYS G2326 " (cutoff:3.500A) removed outlier: 5.198A pdb=" N TYR G2331 " --> pdb=" O GLY G2327 " (cutoff:3.500A) removed outlier: 4.256A pdb=" N LEU G2332 " --> pdb=" O GLY G2328 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N ASP G2333 " --> pdb=" O GLU G2329 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N PHE G2334 " --> pdb=" O ARG G2330 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N LEU G2335 " --> pdb=" O TYR G2331 " (cutoff:3.500A) Processing helix chain 'G' and resid 2346 through 2361 removed outlier: 4.242A pdb=" N ALA G2350 " --> pdb=" O VAL G2346 " (cutoff:3.500A) removed outlier: 4.566A pdb=" N ASN G2351 " --> pdb=" O GLU G2347 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N VAL G2354 " --> pdb=" O ALA G2350 " (cutoff:3.500A) removed outlier: 4.339A pdb=" N ARG G2355 " --> pdb=" O ASN G2351 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ARG G2359 " --> pdb=" O ARG G2355 " (cutoff:3.500A) removed outlier: 4.764A pdb=" N LYS G2360 " --> pdb=" O LEU G2356 " (cutoff:3.500A) Proline residue: G2361 - end of helix Processing helix chain 'G' and resid 2375 through 2390 removed outlier: 3.976A pdb=" N ALA G2379 " --> pdb=" O GLY G2375 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N ILE G2380 " --> pdb=" O LEU G2376 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N GLU G2382 " --> pdb=" O ALA G2378 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N ARG G2385 " --> pdb=" O GLU G2381 " (cutoff:3.500A) Proline residue: G2390 - end of helix Processing helix chain 'G' and resid 2417 through 2437 removed outlier: 3.893A pdb=" N ILE G2422 " --> pdb=" O LEU G2418 " (cutoff:3.500A) removed outlier: 5.011A pdb=" N MET G2423 " --> pdb=" O GLY G2419 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N TYR G2426 " --> pdb=" O ILE G2422 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N ASP G2431 " --> pdb=" O ALA G2427 " (cutoff:3.500A) removed outlier: 4.335A pdb=" N LEU G2432 " --> pdb=" O ALA G2428 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N LEU G2433 " --> pdb=" O LEU G2429 " (cutoff:3.500A) removed outlier: 4.297A pdb=" N ALA G2437 " --> pdb=" O LEU G2433 " (cutoff:3.500A) Processing helix chain 'G' and resid 2439 through 2446 removed outlier: 3.708A pdb=" N ILE G2443 " --> pdb=" O GLU G2439 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N GLN G2444 " --> pdb=" O MET G2440 " (cutoff:3.500A) removed outlier: 4.226A pdb=" N ALA G2445 " --> pdb=" O HIS G2441 " (cutoff:3.500A) removed outlier: 5.633A pdb=" N GLY G2446 " --> pdb=" O LEU G2442 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 2439 through 2446' Processing helix chain 'G' and resid 2447 through 2462 removed outlier: 4.618A pdb=" N LEU G2451 " --> pdb=" O LYS G2447 " (cutoff:3.500A) removed outlier: 5.208A pdb=" N ARG G2452 " --> pdb=" O GLY G2448 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N ILE G2453 " --> pdb=" O GLU G2449 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N ARG G2454 " --> pdb=" O ALA G2450 " (cutoff:3.500A) removed outlier: 3.801A pdb=" N VAL G2461 " --> pdb=" O LEU G2457 " (cutoff:3.500A) Proline residue: G2462 - end of helix Processing helix chain 'G' and resid 2463 through 2472 removed outlier: 4.019A pdb=" N VAL G2467 " --> pdb=" O LEU G2463 " (cutoff:3.500A) removed outlier: 4.014A pdb=" N GLY G2468 " --> pdb=" O ASP G2464 " (cutoff:3.500A) removed outlier: 4.142A pdb=" N ILE G2469 " --> pdb=" O ASP G2465 " (cutoff:3.500A) Processing helix chain 'G' and resid 2495 through 2509 removed outlier: 4.348A pdb=" N LYS G2499 " --> pdb=" O VAL G2495 " (cutoff:3.500A) removed outlier: 4.526A pdb=" N SER G2501 " --> pdb=" O ASP G2497 " (cutoff:3.500A) removed outlier: 4.082A pdb=" N MET G2502 " --> pdb=" O HIS G2498 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N VAL G2503 " --> pdb=" O LYS G2499 " (cutoff:3.500A) removed outlier: 4.511A pdb=" N LEU G2504 " --> pdb=" O ALA G2500 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N ARG G2508 " --> pdb=" O LEU G2504 " (cutoff:3.500A) removed outlier: 4.591A pdb=" N VAL G2509 " --> pdb=" O PHE G2505 " (cutoff:3.500A) Processing helix chain 'G' and resid 2514 through 2537 removed outlier: 4.039A pdb=" N LEU G2518 " --> pdb=" O ASN G2514 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N HIS G2520 " --> pdb=" O ASP G2516 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N LEU G2522 " --> pdb=" O LEU G2518 " (cutoff:3.500A) removed outlier: 3.892A pdb=" N ASP G2523 " --> pdb=" O LEU G2519 " (cutoff:3.500A) removed outlier: 4.603A pdb=" N VAL G2524 " --> pdb=" O HIS G2520 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N GLY G2525 " --> pdb=" O VAL G2521 " (cutoff:3.500A) removed outlier: 4.793A pdb=" N PHE G2526 " --> pdb=" O LEU G2522 " (cutoff:3.500A) removed outlier: 5.435A pdb=" N LEU G2527 " --> pdb=" O ASP G2523 " (cutoff:3.500A) Proline residue: G2528 - end of helix removed outlier: 3.504A pdb=" N ALA G2532 " --> pdb=" O PRO G2528 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N LEU G2536 " --> pdb=" O ALA G2532 " (cutoff:3.500A) Processing helix chain 'G' and resid 2544 through 2566 removed outlier: 3.781A pdb=" N LEU G2548 " --> pdb=" O THR G2544 " (cutoff:3.500A) removed outlier: 3.726A pdb=" N TYR G2553 " --> pdb=" O ALA G2549 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N VAL G2558 " --> pdb=" O LEU G2554 " (cutoff:3.500A) removed outlier: 6.491A pdb=" N LEU G2559 " --> pdb=" O CYS G2555 " (cutoff:3.500A) Proline residue: G2560 - end of helix removed outlier: 3.835A pdb=" N LYS G2564 " --> pdb=" O PRO G2560 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N CYS G2565 " --> pdb=" O LEU G2561 " (cutoff:3.500A) Processing helix chain 'G' and resid 2575 through 2591 removed outlier: 5.097A pdb=" N VAL G2579 " --> pdb=" O ARG G2575 " (cutoff:3.500A) removed outlier: 4.016A pdb=" N ASP G2580 " --> pdb=" O ALA G2576 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N TYR G2587 " --> pdb=" O LEU G2583 " (cutoff:3.500A) removed outlier: 4.866A pdb=" N ARG G2591 " --> pdb=" O TYR G2587 " (cutoff:3.500A) Processing helix chain 'G' and resid 2598 through 2614 removed outlier: 5.121A pdb=" N VAL G2602 " --> pdb=" O ALA G2598 " (cutoff:3.500A) removed outlier: 4.678A pdb=" N ILE G2603 " --> pdb=" O GLN G2599 " (cutoff:3.500A) removed outlier: 4.142A pdb=" N MET G2608 " --> pdb=" O GLU G2604 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N ALA G2609 " --> pdb=" O ASP G2605 " (cutoff:3.500A) removed outlier: 4.748A pdb=" N TYR G2613 " --> pdb=" O ALA G2609 " (cutoff:3.500A) removed outlier: 5.052A pdb=" N ILE G2614 " --> pdb=" O LEU G2610 " (cutoff:3.500A) Processing helix chain 'G' and resid 2618 through 2634 removed outlier: 4.874A pdb=" N LEU G2622 " --> pdb=" O MET G2618 " (cutoff:3.500A) removed outlier: 4.667A pdb=" N ARG G2625 " --> pdb=" O HIS G2621 " (cutoff:3.500A) removed outlier: 3.656A pdb=" N VAL G2627 " --> pdb=" O LEU G2623 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N PHE G2628 " --> pdb=" O ARG G2624 " (cutoff:3.500A) removed outlier: 4.368A pdb=" N ASP G2629 " --> pdb=" O ARG G2625 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N VAL G2630 " --> pdb=" O LEU G2626 " (cutoff:3.500A) Proline residue: G2631 - end of helix removed outlier: 4.885A pdb=" N ASN G2634 " --> pdb=" O VAL G2630 " (cutoff:3.500A) Processing helix chain 'G' and resid 2748 through 2774 removed outlier: 3.906A pdb=" N ASP G2752 " --> pdb=" O PRO G2748 " (cutoff:3.500A) removed outlier: 4.148A pdb=" N SER G2753 " --> pdb=" O GLU G2749 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N ASN G2756 " --> pdb=" O ASP G2752 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N GLN G2772 " --> pdb=" O PHE G2768 " (cutoff:3.500A) removed outlier: 4.159A pdb=" N ASN G2773 " --> pdb=" O ASP G2769 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N ASN G2774 " --> pdb=" O LYS G2770 " (cutoff:3.500A) Processing helix chain 'G' and resid 2798 through 2803 removed outlier: 3.594A pdb=" N GLU G2803 " --> pdb=" O GLU G2799 " (cutoff:3.500A) Processing helix chain 'G' and resid 2805 through 2820 removed outlier: 3.717A pdb=" N ILE G2809 " --> pdb=" O TYR G2805 " (cutoff:3.500A) removed outlier: 4.489A pdb=" N SER G2812 " --> pdb=" O PRO G2808 " (cutoff:3.500A) removed outlier: 4.626A pdb=" N LEU G2813 " --> pdb=" O ILE G2809 " (cutoff:3.500A) Processing helix chain 'G' and resid 2868 through 2896 removed outlier: 3.999A pdb=" N ALA G2873 " --> pdb=" O ARG G2869 " (cutoff:3.500A) Processing helix chain 'G' and resid 2913 through 2932 removed outlier: 4.061A pdb=" N ARG G2918 " --> pdb=" O LYS G2914 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N ARG G2920 " --> pdb=" O LYS G2916 " (cutoff:3.500A) removed outlier: 5.047A pdb=" N GLU G2921 " --> pdb=" O ALA G2917 " (cutoff:3.500A) removed outlier: 4.801A pdb=" N LYS G2922 " --> pdb=" O ARG G2918 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N ALA G2923 " --> pdb=" O ASP G2919 " (cutoff:3.500A) removed outlier: 4.050A pdb=" N MET G2932 " --> pdb=" O LYS G2928 " (cutoff:3.500A) Processing helix chain 'G' and resid 3625 through 3638 removed outlier: 4.574A pdb=" N ARG G3629 " --> pdb=" O SER G3625 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N ARG G3630 " --> pdb=" O LYS G3626 " (cutoff:3.500A) removed outlier: 4.157A pdb=" N VAL G3632 " --> pdb=" O ARG G3628 " (cutoff:3.500A) removed outlier: 4.609A pdb=" N VAL G3633 " --> pdb=" O ARG G3629 " (cutoff:3.500A) removed outlier: 3.831A pdb=" N ARG G3637 " --> pdb=" O VAL G3633 " (cutoff:3.500A) Processing helix chain 'G' and resid 3640 through 3645 removed outlier: 3.927A pdb=" N LEU G3644 " --> pdb=" O PRO G3640 " (cutoff:3.500A) Proline residue: G3645 - end of helix No H-bonds generated for 'chain 'G' and resid 3640 through 3645' Processing helix chain 'G' and resid 3646 through 3665 removed outlier: 3.983A pdb=" N ASN G3651 " --> pdb=" O HIS G3647 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N LEU G3654 " --> pdb=" O CYS G3650 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N GLU G3655 " --> pdb=" O ASN G3651 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N SER G3656 " --> pdb=" O MET G3652 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N ALA G3659 " --> pdb=" O GLU G3655 " (cutoff:3.500A) removed outlier: 3.916A pdb=" N ILE G3662 " --> pdb=" O LYS G3658 " (cutoff:3.500A) removed outlier: 5.142A pdb=" N LEU G3663 " --> pdb=" O ALA G3659 " (cutoff:3.500A) removed outlier: 4.791A pdb=" N THR G3664 " --> pdb=" O ALA G3660 " (cutoff:3.500A) removed outlier: 4.051A pdb=" N GLU G3665 " --> pdb=" O TRP G3661 " (cutoff:3.500A) Processing helix chain 'G' and resid 3668 through 3681 removed outlier: 4.499A pdb=" N ARG G3672 " --> pdb=" O SER G3668 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N MET G3673 " --> pdb=" O PHE G3669 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N ILE G3674 " --> pdb=" O GLU G3670 " (cutoff:3.500A) removed outlier: 3.920A pdb=" N ASP G3675 " --> pdb=" O ASP G3671 " (cutoff:3.500A) removed outlier: 4.189A pdb=" N ASP G3676 " --> pdb=" O ARG G3672 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N LEU G3677 " --> pdb=" O MET G3673 " (cutoff:3.500A) removed outlier: 4.880A pdb=" N GLY G3681 " --> pdb=" O LEU G3677 " (cutoff:3.500A) Processing helix chain 'G' and resid 3696 through 3711 removed outlier: 3.572A pdb=" N LEU G3701 " --> pdb=" O PRO G3697 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N ARG G3707 " --> pdb=" O LEU G3703 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N ALA G3709 " --> pdb=" O PHE G3705 " (cutoff:3.500A) removed outlier: 4.740A pdb=" N LEU G3710 " --> pdb=" O SER G3706 " (cutoff:3.500A) removed outlier: 4.881A pdb=" N THR G3711 " --> pdb=" O ARG G3707 " (cutoff:3.500A) Processing helix chain 'G' and resid 3719 through 3735 removed outlier: 4.906A pdb=" N MET G3723 " --> pdb=" O ASP G3719 " (cutoff:3.500A) removed outlier: 4.495A pdb=" N ALA G3724 " --> pdb=" O TYR G3720 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N ASP G3727 " --> pdb=" O MET G3723 " (cutoff:3.500A) removed outlier: 5.006A pdb=" N CYS G3733 " --> pdb=" O MET G3729 " (cutoff:3.500A) removed outlier: 4.293A pdb=" N HIS G3734 " --> pdb=" O ALA G3730 " (cutoff:3.500A) removed outlier: 4.894A pdb=" N LEU G3735 " --> pdb=" O LYS G3731 " (cutoff:3.500A) Processing helix chain 'G' and resid 3752 through 3772 removed outlier: 3.983A pdb=" N LYS G3756 " --> pdb=" O SER G3752 " (cutoff:3.500A) removed outlier: 4.137A pdb=" N LEU G3770 " --> pdb=" O GLN G3766 " (cutoff:3.500A) removed outlier: 4.000A pdb=" N THR G3772 " --> pdb=" O SER G3768 " (cutoff:3.500A) Processing helix chain 'G' and resid 3774 through 3787 removed outlier: 4.033A pdb=" N VAL G3779 " --> pdb=" O ALA G3775 " (cutoff:3.500A) removed outlier: 4.942A pdb=" N LEU G3780 " --> pdb=" O ALA G3776 " (cutoff:3.500A) removed outlier: 4.314A pdb=" N GLN G3781 " --> pdb=" O GLU G3777 " (cutoff:3.500A) removed outlier: 4.134A pdb=" N MET G3782 " --> pdb=" O MET G3778 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N ILE G3783 " --> pdb=" O VAL G3779 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N CYS G3786 " --> pdb=" O MET G3782 " (cutoff:3.500A) removed outlier: 3.766A pdb=" N LYS G3787 " --> pdb=" O ILE G3783 " (cutoff:3.500A) Processing helix chain 'G' and resid 3791 through 3806 removed outlier: 4.047A pdb=" N SER G3795 " --> pdb=" O GLY G3791 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N SER G3796 " --> pdb=" O ALA G3792 " (cutoff:3.500A) removed outlier: 4.566A pdb=" N LYS G3799 " --> pdb=" O SER G3795 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N GLY G3801 " --> pdb=" O THR G3797 " (cutoff:3.500A) Processing helix chain 'G' and resid 3809 through 3824 removed outlier: 4.284A pdb=" N GLN G3813 " --> pdb=" O ASN G3809 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N MET G3816 " --> pdb=" O VAL G3812 " (cutoff:3.500A) removed outlier: 4.475A pdb=" N ASP G3818 " --> pdb=" O GLN G3814 " (cutoff:3.500A) removed outlier: 4.112A pdb=" N TYR G3819 " --> pdb=" O LYS G3815 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N LYS G3823 " --> pdb=" O TYR G3819 " (cutoff:3.500A) Processing helix chain 'G' and resid 3826 through 3839 removed outlier: 6.502A pdb=" N GLN G3830 " --> pdb=" O VAL G3826 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N MET G3836 " --> pdb=" O ILE G3832 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N GLN G3837 " --> pdb=" O GLN G3833 " (cutoff:3.500A) removed outlier: 3.906A pdb=" N THR G3838 " --> pdb=" O ALA G3834 " (cutoff:3.500A) removed outlier: 5.105A pdb=" N CYS G3839 " --> pdb=" O LEU G3835 " (cutoff:3.500A) Processing helix chain 'G' and resid 3843 through 3857 removed outlier: 4.147A pdb=" N PHE G3847 " --> pdb=" O ASP G3843 " (cutoff:3.500A) removed outlier: 5.365A pdb=" N GLU G3848 " --> pdb=" O LEU G3844 " (cutoff:3.500A) removed outlier: 4.554A pdb=" N ARG G3849 " --> pdb=" O ASN G3845 " (cutoff:3.500A) removed outlier: 4.797A pdb=" N GLN G3850 " --> pdb=" O ALA G3846 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N LYS G3852 " --> pdb=" O GLU G3848 " (cutoff:3.500A) removed outlier: 4.127A pdb=" N GLY G3855 " --> pdb=" O ASN G3851 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N LEU G3856 " --> pdb=" O LYS G3852 " (cutoff:3.500A) removed outlier: 5.470A pdb=" N GLY G3857 " --> pdb=" O ALA G3853 " (cutoff:3.500A) Processing helix chain 'G' and resid 3866 through 3871 Processing helix chain 'G' and resid 3877 through 3893 removed outlier: 3.643A pdb=" N THR G3881 " --> pdb=" O ASP G3877 " (cutoff:3.500A) removed outlier: 3.974A pdb=" N CYS G3892 " --> pdb=" O LEU G3888 " (cutoff:3.500A) Processing helix chain 'G' and resid 3896 through 3905 removed outlier: 3.838A pdb=" N GLN G3900 " --> pdb=" O ASN G3896 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N ARG G3904 " --> pdb=" O GLN G3900 " (cutoff:3.500A) Processing helix chain 'G' and resid 3914 through 3938 removed outlier: 3.833A pdb=" N CYS G3918 " --> pdb=" O ASN G3914 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ASP G3932 " --> pdb=" O GLU G3928 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N TYR G3937 " --> pdb=" O PHE G3933 " (cutoff:3.500A) Processing helix chain 'G' and resid 3945 through 3970 removed outlier: 3.979A pdb=" N VAL G3957 " --> pdb=" O LYS G3953 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N GLN G3960 " --> pdb=" O SER G3956 " (cutoff:3.500A) removed outlier: 4.364A pdb=" N ASN G3963 " --> pdb=" O LYS G3959 " (cutoff:3.500A) removed outlier: 4.203A pdb=" N LEU G3965 " --> pdb=" O VAL G3961 " (cutoff:3.500A) removed outlier: 4.618A pdb=" N THR G3966 " --> pdb=" O PHE G3962 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N TYR G3968 " --> pdb=" O SER G3964 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N ILE G3969 " --> pdb=" O LEU G3965 " (cutoff:3.500A) Processing helix chain 'G' and resid 3974 through 3983 removed outlier: 3.696A pdb=" N GLN G3978 " --> pdb=" O THR G3974 " (cutoff:3.500A) removed outlier: 4.249A pdb=" N SER G3979 " --> pdb=" O GLY G3975 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N ALA G3981 " --> pdb=" O GLN G3977 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N HIS G3982 " --> pdb=" O GLN G3978 " (cutoff:3.500A) Processing helix chain 'G' and resid 3984 through 4004 removed outlier: 4.431A pdb=" N ALA G3988 " --> pdb=" O ARG G3984 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N VAL G3995 " --> pdb=" O GLY G3991 " (cutoff:3.500A) removed outlier: 4.610A pdb=" N MET G4000 " --> pdb=" O PHE G3996 " (cutoff:3.500A) removed outlier: 4.409A pdb=" N MET G4001 " --> pdb=" O ALA G3997 " (cutoff:3.500A) removed outlier: 4.329A pdb=" N LYS G4002 " --> pdb=" O HIS G3998 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ALA G4004 " --> pdb=" O MET G4000 " (cutoff:3.500A) Processing helix chain 'G' and resid 4010 through 4032 removed outlier: 4.130A pdb=" N GLU G4015 " --> pdb=" O GLU G4011 " (cutoff:3.500A) removed outlier: 4.031A pdb=" N ASP G4022 " --> pdb=" O ASP G4018 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N VAL G4025 " --> pdb=" O LYS G4021 " (cutoff:3.500A) removed outlier: 4.022A pdb=" N LEU G4027 " --> pdb=" O MET G4023 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N SER G4029 " --> pdb=" O VAL G4025 " (cutoff:3.500A) removed outlier: 4.203A pdb=" N LEU G4030 " --> pdb=" O MET G4026 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N LEU G4031 " --> pdb=" O LEU G4027 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N GLU G4032 " --> pdb=" O LEU G4028 " (cutoff:3.500A) Processing helix chain 'G' and resid 4038 through 4052 removed outlier: 3.687A pdb=" N VAL G4045 " --> pdb=" O ALA G4041 " (cutoff:3.500A) removed outlier: 4.209A pdb=" N MET G4047 " --> pdb=" O GLN G4043 " (cutoff:3.500A) removed outlier: 4.807A pdb=" N LEU G4048 " --> pdb=" O MET G4044 " (cutoff:3.500A) removed outlier: 3.781A pdb=" N VAL G4049 " --> pdb=" O VAL G4045 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N SER G4052 " --> pdb=" O LEU G4048 " (cutoff:3.500A) Processing helix chain 'G' and resid 4053 through 4071 removed outlier: 5.450A pdb=" N MET G4057 " --> pdb=" O SER G4053 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N ILE G4058 " --> pdb=" O ASN G4054 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N PHE G4062 " --> pdb=" O ILE G4058 " (cutoff:3.500A) removed outlier: 3.917A pdb=" N ASP G4063 " --> pdb=" O LEU G4059 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N PHE G4065 " --> pdb=" O PHE G4061 " (cutoff:3.500A) removed outlier: 4.105A pdb=" N LEU G4066 " --> pdb=" O PHE G4062 " (cutoff:3.500A) removed outlier: 4.870A pdb=" N LEU G4068 " --> pdb=" O MET G4064 " (cutoff:3.500A) removed outlier: 5.058A pdb=" N LYS G4069 " --> pdb=" O PHE G4065 " (cutoff:3.500A) removed outlier: 4.461A pdb=" N ASP G4070 " --> pdb=" O LEU G4066 " (cutoff:3.500A) Processing helix chain 'G' and resid 4074 through 4080 removed outlier: 3.913A pdb=" N GLN G4078 " --> pdb=" O SER G4074 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N ASP G4079 " --> pdb=" O GLU G4075 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N TYR G4080 " --> pdb=" O ALA G4076 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4074 through 4080' Processing helix chain 'G' and resid 4089 through 4101 removed outlier: 3.544A pdb=" N PHE G4093 " --> pdb=" O SER G4089 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N LYS G4095 " --> pdb=" O LYS G4091 " (cutoff:3.500A) removed outlier: 4.081A pdb=" N ALA G4096 " --> pdb=" O ASP G4092 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N SER G4099 " --> pdb=" O LYS G4095 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N GLN G4100 " --> pdb=" O ALA G4096 " (cutoff:3.500A) removed outlier: 5.937A pdb=" N LYS G4101 " --> pdb=" O MET G4097 " (cutoff:3.500A) Processing helix chain 'G' and resid 4107 through 4116 removed outlier: 5.148A pdb=" N LEU G4111 " --> pdb=" O GLU G4107 " (cutoff:3.500A) removed outlier: 4.624A pdb=" N GLU G4116 " --> pdb=" O LEU G4112 " (cutoff:3.500A) Processing helix chain 'G' and resid 4124 through 4137 removed outlier: 3.727A pdb=" N ASN G4130 " --> pdb=" O GLU G4126 " (cutoff:3.500A) removed outlier: 4.057A pdb=" N ARG G4131 " --> pdb=" O GLU G4127 " (cutoff:3.500A) removed outlier: 4.574A pdb=" N PHE G4132 " --> pdb=" O PHE G4128 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N GLN G4133 " --> pdb=" O ALA G4129 " (cutoff:3.500A) removed outlier: 4.199A pdb=" N GLU G4134 " --> pdb=" O ASN G4130 " (cutoff:3.500A) Proline residue: G4135 - end of helix Processing helix chain 'G' and resid 4138 through 4154 removed outlier: 3.801A pdb=" N ASN G4142 " --> pdb=" O ASP G4138 " (cutoff:3.500A) removed outlier: 4.057A pdb=" N LEU G4150 " --> pdb=" O LEU G4146 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N SER G4151 " --> pdb=" O LEU G4147 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N GLU G4152 " --> pdb=" O THR G4148 " (cutoff:3.500A) Processing helix chain 'G' and resid 4157 through 4168 removed outlier: 4.176A pdb=" N ARG G4161 " --> pdb=" O ASP G4157 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N ASN G4162 " --> pdb=" O PRO G4158 " (cutoff:3.500A) removed outlier: 4.890A pdb=" N PHE G4163 " --> pdb=" O ARG G4159 " (cutoff:3.500A) removed outlier: 4.736A pdb=" N LEU G4164 " --> pdb=" O LEU G4160 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N GLU G4165 " --> pdb=" O ARG G4161 " (cutoff:3.500A) Processing helix chain 'G' and resid 4169 through 4175 Processing helix chain 'G' and resid 4198 through 4207 removed outlier: 3.773A pdb=" N ALA G4203 " --> pdb=" O GLU G4199 " (cutoff:3.500A) removed outlier: 4.263A pdb=" N GLN G4204 " --> pdb=" O THR G4200 " (cutoff:3.500A) removed outlier: 4.028A pdb=" N TRP G4205 " --> pdb=" O ASN G4201 " (cutoff:3.500A) removed outlier: 4.587A pdb=" N GLU G4206 " --> pdb=" O ARG G4202 " (cutoff:3.500A) removed outlier: 5.498A pdb=" N MET G4207 " --> pdb=" O ALA G4203 " (cutoff:3.500A) Processing helix chain 'G' and resid 4208 through 4224 removed outlier: 4.504A pdb=" N GLU G4212 " --> pdb=" O PRO G4208 " (cutoff:3.500A) removed outlier: 5.102A pdb=" N SER G4213 " --> pdb=" O GLN G4209 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N ARG G4215 " --> pdb=" O LYS G4211 " (cutoff:3.500A) removed outlier: 4.371A pdb=" N ASP G4220 " --> pdb=" O GLN G4216 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N VAL G4221 " --> pdb=" O PHE G4217 " (cutoff:3.500A) removed outlier: 4.953A pdb=" N VAL G4222 " --> pdb=" O ILE G4218 " (cutoff:3.500A) removed outlier: 3.873A pdb=" N ASN G4223 " --> pdb=" O PHE G4219 " (cutoff:3.500A) removed outlier: 4.793A pdb=" N GLU G4224 " --> pdb=" O ASP G4220 " (cutoff:3.500A) Processing helix chain 'G' and resid 4229 through 4252 removed outlier: 4.556A pdb=" N LEU G4233 " --> pdb=" O GLU G4229 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N PHE G4234 " --> pdb=" O LYS G4230 " (cutoff:3.500A) removed outlier: 4.325A pdb=" N SER G4236 " --> pdb=" O GLU G4232 " (cutoff:3.500A) Processing helix chain 'G' and resid 4541 through 4559 removed outlier: 4.177A pdb=" N VAL G4546 " --> pdb=" O GLY G4542 " (cutoff:3.500A) removed outlier: 4.189A pdb=" N GLN G4547 " --> pdb=" O GLU G4543 " (cutoff:3.500A) removed outlier: 4.173A pdb=" N VAL G4549 " --> pdb=" O GLU G4545 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N TYR G4554 " --> pdb=" O LYS G4550 " (cutoff:3.500A) removed outlier: 4.343A pdb=" N ASN G4558 " --> pdb=" O TYR G4554 " (cutoff:3.500A) removed outlier: 4.293A pdb=" N PHE G4559 " --> pdb=" O LEU G4555 " (cutoff:3.500A) Processing helix chain 'G' and resid 4560 through 4579 removed outlier: 3.802A pdb=" N ALA G4570 " --> pdb=" O ALA G4566 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N LEU G4578 " --> pdb=" O ASN G4574 " (cutoff:3.500A) removed outlier: 5.101A pdb=" N PHE G4579 " --> pdb=" O PHE G4575 " (cutoff:3.500A) Processing helix chain 'G' and resid 4640 through 4683 removed outlier: 3.941A pdb=" N TRP G4644 " --> pdb=" O GLU G4640 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N CYS G4645 " --> pdb=" O PRO G4641 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N LEU G4648 " --> pdb=" O TRP G4644 " (cutoff:3.500A) removed outlier: 4.901A pdb=" N VAL G4666 " --> pdb=" O ASN G4662 " (cutoff:3.500A) Proline residue: G4667 - end of helix removed outlier: 4.245A pdb=" N LYS G4672 " --> pdb=" O LEU G4668 " (cutoff:3.500A) removed outlier: 5.344A pdb=" N ARG G4673 " --> pdb=" O VAL G4669 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N GLU G4674 " --> pdb=" O ILE G4670 " (cutoff:3.500A) Processing helix chain 'G' and resid 4696 through 4707 removed outlier: 4.769A pdb=" N GLN G4700 " --> pdb=" O ASP G4696 " (cutoff:3.500A) removed outlier: 4.658A pdb=" N TRP G4701 " --> pdb=" O VAL G4697 " (cutoff:3.500A) removed outlier: 4.412A pdb=" N ARG G4703 " --> pdb=" O GLY G4699 " (cutoff:3.500A) removed outlier: 4.834A pdb=" N LEU G4704 " --> pdb=" O GLN G4700 " (cutoff:3.500A) removed outlier: 5.039A pdb=" N VAL G4705 " --> pdb=" O TRP G4701 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N LEU G4706 " --> pdb=" O ASP G4702 " (cutoff:3.500A) removed outlier: 5.354A pdb=" N ASN G4707 " --> pdb=" O ARG G4703 " (cutoff:3.500A) Processing helix chain 'G' and resid 4719 through 4729 removed outlier: 3.585A pdb=" N LYS G4723 " --> pdb=" O PHE G4719 " (cutoff:3.500A) removed outlier: 3.733A pdb=" N VAL G4724 " --> pdb=" O VAL G4720 " (cutoff:3.500A) removed outlier: 4.344A pdb=" N LEU G4725 " --> pdb=" O LYS G4721 " (cutoff:3.500A) Processing helix chain 'G' and resid 4733 through 4742 removed outlier: 3.716A pdb=" N ILE G4737 " --> pdb=" O GLY G4733 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N GLU G4739 " --> pdb=" O GLU G4735 " (cutoff:3.500A) Processing helix chain 'G' and resid 4745 through 4756 removed outlier: 3.738A pdb=" N THR G4751 " --> pdb=" O SER G4747 " (cutoff:3.500A) removed outlier: 3.825A pdb=" N ASN G4754 " --> pdb=" O ILE G4750 " (cutoff:3.500A) Processing helix chain 'G' and resid 4766 through 4772 removed outlier: 4.005A pdb=" N SER G4770 " --> pdb=" O THR G4766 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N ILE G4771 " --> pdb=" O TRP G4767 " (cutoff:3.500A) removed outlier: 5.339A pdb=" N ASP G4772 " --> pdb=" O LEU G4768 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4766 through 4772' Processing helix chain 'G' and resid 4773 through 4787 removed outlier: 4.389A pdb=" N ILE G4777 " --> pdb=" O VAL G4773 " (cutoff:3.500A) removed outlier: 3.634A pdb=" N VAL G4782 " --> pdb=" O TRP G4778 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N ILE G4783 " --> pdb=" O LYS G4779 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N PHE G4784 " --> pdb=" O PHE G4780 " (cutoff:3.500A) removed outlier: 5.594A pdb=" N ASN G4787 " --> pdb=" O ILE G4783 " (cutoff:3.500A) Processing helix chain 'G' and resid 4788 through 4803 removed outlier: 3.524A pdb=" N MET G4796 " --> pdb=" O LEU G4792 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N MET G4798 " --> pdb=" O TRP G4794 " (cutoff:3.500A) removed outlier: 4.400A pdb=" N SER G4799 " --> pdb=" O TYR G4795 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N LEU G4800 " --> pdb=" O MET G4796 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N LEU G4801 " --> pdb=" O VAL G4797 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N HIS G4803 " --> pdb=" O SER G4799 " (cutoff:3.500A) Processing helix chain 'G' and resid 4808 through 4821 removed outlier: 5.049A pdb=" N HIS G4812 " --> pdb=" O PHE G4808 " (cutoff:3.500A) removed outlier: 4.386A pdb=" N LEU G4813 " --> pdb=" O PHE G4809 " (cutoff:3.500A) removed outlier: 4.471A pdb=" N LEU G4814 " --> pdb=" O ALA G4810 " (cutoff:3.500A) removed outlier: 4.721A pdb=" N ASP G4815 " --> pdb=" O ALA G4811 " (cutoff:3.500A) removed outlier: 5.169A pdb=" N ILE G4816 " --> pdb=" O HIS G4812 " (cutoff:3.500A) removed outlier: 4.971A pdb=" N ALA G4817 " --> pdb=" O LEU G4813 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N MET G4818 " --> pdb=" O LEU G4814 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N VAL G4820 " --> pdb=" O ILE G4816 " (cutoff:3.500A) removed outlier: 5.949A pdb=" N LYS G4821 " --> pdb=" O ALA G4817 " (cutoff:3.500A) Processing helix chain 'G' and resid 4822 through 4833 removed outlier: 4.746A pdb=" N ILE G4826 " --> pdb=" O THR G4822 " (cutoff:3.500A) removed outlier: 4.308A pdb=" N LEU G4827 " --> pdb=" O LEU G4823 " (cutoff:3.500A) removed outlier: 3.948A pdb=" N VAL G4830 " --> pdb=" O ILE G4826 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N THR G4831 " --> pdb=" O LEU G4827 " (cutoff:3.500A) Processing helix chain 'G' and resid 4834 through 4858 removed outlier: 4.632A pdb=" N MET G4839 " --> pdb=" O LYS G4835 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N VAL G4848 " --> pdb=" O LEU G4844 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N TYR G4849 " --> pdb=" O ALA G4845 " (cutoff:3.500A) removed outlier: 4.205A pdb=" N VAL G4853 " --> pdb=" O TYR G4849 " (cutoff:3.500A) removed outlier: 4.501A pdb=" N VAL G4854 " --> pdb=" O LEU G4850 " (cutoff:3.500A) removed outlier: 4.334A pdb=" N ALA G4855 " --> pdb=" O TYR G4851 " (cutoff:3.500A) Processing helix chain 'G' and resid 4878 through 4890 Processing helix chain 'G' and resid 4897 through 4902 removed outlier: 4.221A pdb=" N ILE G4901 " --> pdb=" O ILE G4897 " (cutoff:3.500A) removed outlier: 5.128A pdb=" N GLU G4902 " --> pdb=" O GLY G4898 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4897 through 4902' Processing helix chain 'G' and resid 4909 through 4924 removed outlier: 3.544A pdb=" N ARG G4913 " --> pdb=" O TYR G4909 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N VAL G4914 " --> pdb=" O GLU G4910 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N VAL G4915 " --> pdb=" O LEU G4911 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N ILE G4918 " --> pdb=" O VAL G4914 " (cutoff:3.500A) removed outlier: 4.111A pdb=" N PHE G4923 " --> pdb=" O THR G4919 " (cutoff:3.500A) Processing helix chain 'G' and resid 4928 through 4956 removed outlier: 3.965A pdb=" N ILE G4932 " --> pdb=" O LEU G4928 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N ILE G4936 " --> pdb=" O ILE G4932 " (cutoff:3.500A) removed outlier: 4.454A pdb=" N ALA G4939 " --> pdb=" O LEU G4935 " (cutoff:3.500A) removed outlier: 3.684A pdb=" N GLU G4948 " --> pdb=" O ARG G4944 " (cutoff:3.500A) removed outlier: 3.819A pdb=" N VAL G4950 " --> pdb=" O GLN G4946 " (cutoff:3.500A) removed outlier: 4.410A pdb=" N LYS G4951 " --> pdb=" O GLN G4947 " (cutoff:3.500A) Processing helix chain 'G' and resid 4973 through 4981 removed outlier: 4.310A pdb=" N THR G4977 " --> pdb=" O HIS G4973 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N HIS G4978 " --> pdb=" O GLY G4974 " (cutoff:3.500A) removed outlier: 4.334A pdb=" N GLU G4981 " --> pdb=" O THR G4977 " (cutoff:3.500A) Processing helix chain 'G' and resid 4984 through 4999 removed outlier: 4.041A pdb=" N TYR G4988 " --> pdb=" O ASN G4984 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N MET G4989 " --> pdb=" O LEU G4985 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N LEU G4995 " --> pdb=" O PHE G4991 " (cutoff:3.500A) removed outlier: 4.263A pdb=" N ILE G4996 " --> pdb=" O LEU G4992 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N ASN G4997 " --> pdb=" O MET G4993 " (cutoff:3.500A) removed outlier: 4.437A pdb=" N LYS G4998 " --> pdb=" O TYR G4994 " (cutoff:3.500A) removed outlier: 6.400A pdb=" N ASP G4999 " --> pdb=" O LEU G4995 " (cutoff:3.500A) Processing helix chain 'G' and resid 5004 through 5017 removed outlier: 3.908A pdb=" N TRP G5011 " --> pdb=" O GLU G5007 " (cutoff:3.500A) removed outlier: 4.458A pdb=" N MET G5013 " --> pdb=" O TYR G5009 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N TYR G5014 " --> pdb=" O VAL G5010 " (cutoff:3.500A) removed outlier: 4.433A pdb=" N GLU G5016 " --> pdb=" O LYS G5012 " (cutoff:3.500A) Processing helix chain 'G' and resid 502 through 507 removed outlier: 3.516A pdb=" N GLU G 505 " --> pdb=" O HIS G 502 " (cutoff:3.500A) removed outlier: 4.502A pdb=" N TYR G 506 " --> pdb=" O PHE G 503 " (cutoff:3.500A) removed outlier: 4.336A pdb=" N ALA G 507 " --> pdb=" O ALA G 504 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 502 through 507' Processing helix chain 'G' and resid 810 through 815 removed outlier: 4.330A pdb=" N GLU G 813 " --> pdb=" O PRO G 810 " (cutoff:3.500A) removed outlier: 3.560A pdb=" N ALA G 814 " --> pdb=" O CYS G 811 " (cutoff:3.500A) removed outlier: 5.198A pdb=" N VAL G 815 " --> pdb=" O HIS G 812 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 810 through 815' Processing helix chain 'G' and resid 4966 through 4971 removed outlier: 3.767A pdb=" N ASP G4969 " --> pdb=" O ASP G4966 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N THR G4970 " --> pdb=" O TYR G4967 " (cutoff:3.500A) removed outlier: 3.991A pdb=" N THR G4971 " --> pdb=" O PHE G4968 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4966 through 4971' Processing helix chain 'G' and resid 5030 through 5035 removed outlier: 4.535A pdb=" N GLU G5033 " --> pdb=" O LYS G5030 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N ASP G5034 " --> pdb=" O GLN G5031 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N GLN G5035 " --> pdb=" O TYR G5032 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 5030 through 5035' Processing helix chain 'G' and resid 4685 through 4690 removed outlier: 3.595A pdb=" N GLU G4690 " --> pdb=" O GLY G4685 " (cutoff:3.500A) No H-bonds generated for 'chain 'G' and resid 4685 through 4690' Processing helix chain 'B' and resid 38 through 43 removed outlier: 5.432A pdb=" N ARG B 42 " --> pdb=" O SER B 38 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N ASN B 43 " --> pdb=" O SER B 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 38 through 43' Processing helix chain 'B' and resid 56 through 66 removed outlier: 3.944A pdb=" N GLU B 61 " --> pdb=" O LYS B 57 " (cutoff:3.500A) removed outlier: 4.542A pdb=" N GLY B 62 " --> pdb=" O GLY B 58 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N ALA B 64 " --> pdb=" O GLU B 60 " (cutoff:3.500A) removed outlier: 4.168A pdb=" N GLN B 65 " --> pdb=" O GLU B 61 " (cutoff:3.500A) removed outlier: 4.477A pdb=" N MET B 66 " --> pdb=" O GLY B 62 " (cutoff:3.500A) Processing helix chain 'B' and resid 77 through 82 removed outlier: 3.917A pdb=" N ALA B 81 " --> pdb=" O THR B 77 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N TYR B 82 " --> pdb=" O PRO B 78 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 77 through 82' Processing helix chain 'D' and resid 38 through 43 removed outlier: 5.433A pdb=" N ARG D 42 " --> pdb=" O SER D 38 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N ASN D 43 " --> pdb=" O SER D 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 38 through 43' Processing helix chain 'D' and resid 56 through 66 removed outlier: 3.943A pdb=" N GLU D 61 " --> pdb=" O LYS D 57 " (cutoff:3.500A) removed outlier: 4.541A pdb=" N GLY D 62 " --> pdb=" O GLY D 58 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N ALA D 64 " --> pdb=" O GLU D 60 " (cutoff:3.500A) removed outlier: 4.168A pdb=" N GLN D 65 " --> pdb=" O GLU D 61 " (cutoff:3.500A) removed outlier: 4.477A pdb=" N MET D 66 " --> pdb=" O GLY D 62 " (cutoff:3.500A) Processing helix chain 'D' and resid 77 through 82 removed outlier: 3.917A pdb=" N ALA D 81 " --> pdb=" O THR D 77 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N TYR D 82 " --> pdb=" O PRO D 78 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 77 through 82' Processing helix chain 'F' and resid 38 through 43 removed outlier: 5.432A pdb=" N ARG F 42 " --> pdb=" O SER F 38 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N ASN F 43 " --> pdb=" O SER F 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 38 through 43' Processing helix chain 'F' and resid 56 through 66 removed outlier: 3.943A pdb=" N GLU F 61 " --> pdb=" O LYS F 57 " (cutoff:3.500A) removed outlier: 4.542A pdb=" N GLY F 62 " --> pdb=" O GLY F 58 " (cutoff:3.500A) removed outlier: 4.025A pdb=" N ALA F 64 " --> pdb=" O GLU F 60 " (cutoff:3.500A) removed outlier: 4.167A pdb=" N GLN F 65 " --> pdb=" O GLU F 61 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N MET F 66 " --> pdb=" O GLY F 62 " (cutoff:3.500A) Processing helix chain 'F' and resid 77 through 82 removed outlier: 3.918A pdb=" N ALA F 81 " --> pdb=" O THR F 77 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N TYR F 82 " --> pdb=" O PRO F 78 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 77 through 82' Processing helix chain 'H' and resid 38 through 43 removed outlier: 5.432A pdb=" N ARG H 42 " --> pdb=" O SER H 38 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N ASN H 43 " --> pdb=" O SER H 39 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 38 through 43' Processing helix chain 'H' and resid 56 through 66 removed outlier: 3.944A pdb=" N GLU H 61 " --> pdb=" O LYS H 57 " (cutoff:3.500A) removed outlier: 4.543A pdb=" N GLY H 62 " --> pdb=" O GLY H 58 " (cutoff:3.500A) removed outlier: 4.024A pdb=" N ALA H 64 " --> pdb=" O GLU H 60 " (cutoff:3.500A) removed outlier: 4.168A pdb=" N GLN H 65 " --> pdb=" O GLU H 61 " (cutoff:3.500A) removed outlier: 4.478A pdb=" N MET H 66 " --> pdb=" O GLY H 62 " (cutoff:3.500A) Processing helix chain 'H' and resid 77 through 82 removed outlier: 3.918A pdb=" N ALA H 81 " --> pdb=" O THR H 77 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N TYR H 82 " --> pdb=" O PRO H 78 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 77 through 82' Processing sheet with id= 1, first strand: chain 'A' and resid 47 through 52 removed outlier: 4.425A pdb=" N PHE A 48 " --> pdb=" O ALA A 38 " (cutoff:3.500A) removed outlier: 5.958A pdb=" N LYS A 34 " --> pdb=" O THR A 52 " (cutoff:3.500A) removed outlier: 5.487A pdb=" N LEU A 22 " --> pdb=" O LEU A 37 " (cutoff:3.500A) removed outlier: 10.072A pdb=" N ALA A 39 " --> pdb=" O VAL A 20 " (cutoff:3.500A) removed outlier: 13.705A pdb=" N VAL A 20 " --> pdb=" O ALA A 39 " (cutoff:3.500A) removed outlier: 6.530A pdb=" N GLU A 19 " --> pdb=" O ILE A 205 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N ASN A 203 " --> pdb=" O VAL A 21 " (cutoff:3.500A) Processing sheet with id= 2, first strand: chain 'A' and resid 71 through 74 removed outlier: 4.566A pdb=" N GLN A 71 " --> pdb=" O LEU A 108 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N LEU A 108 " --> pdb=" O GLN A 71 " (cutoff:3.500A) removed outlier: 4.124A pdb=" N LEU A 73 " --> pdb=" O ALA A 106 " (cutoff:3.500A) removed outlier: 4.375A pdb=" N HIS A 105 " --> pdb=" O MET A 150 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N ALA A 153 " --> pdb=" O ASP A 168 " (cutoff:3.500A) removed outlier: 9.087A pdb=" N ASP A 168 " --> pdb=" O ALA A 153 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'A' and resid 230 through 233 removed outlier: 3.584A pdb=" N GLU A 248 " --> pdb=" O CYS A 230 " (cutoff:3.500A) removed outlier: 6.254A pdb=" N VAL A 245 " --> pdb=" O ALA A 376 " (cutoff:3.500A) Processing sheet with id= 4, first strand: chain 'A' and resid 280 through 284 removed outlier: 3.773A pdb=" N GLU A 263 " --> pdb=" O ARG A 281 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N LEU A 262 " --> pdb=" O HIS A 218 " (cutoff:3.500A) removed outlier: 4.460A pdb=" N HIS A 218 " --> pdb=" O LEU A 262 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N PHE A 223 " --> pdb=" O PHE A 389 " (cutoff:3.500A) Processing sheet with id= 5, first strand: chain 'A' and resid 644 through 647 removed outlier: 5.829A pdb=" N ARG A 822 " --> pdb=" O ASN A 647 " (cutoff:3.500A) Processing sheet with id= 6, first strand: chain 'A' and resid 661 through 668 removed outlier: 3.793A pdb=" N TRP A 662 " --> pdb=" O LEU A 748 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N LEU A 748 " --> pdb=" O TRP A 662 " (cutoff:3.500A) removed outlier: 4.661A pdb=" N PHE A 664 " --> pdb=" O CYS A 746 " (cutoff:3.500A) removed outlier: 4.507A pdb=" N CYS A 746 " --> pdb=" O PHE A 664 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N SER A 754 " --> pdb=" O ASP A 749 " (cutoff:3.500A) Processing sheet with id= 7, first strand: chain 'A' and resid 829 through 832 removed outlier: 4.779A pdb=" N TYR A 829 " --> pdb=" O VAL A 840 " (cutoff:3.500A) Processing sheet with id= 8, first strand: chain 'A' and resid 891 through 894 Processing sheet with id= 9, first strand: chain 'A' and resid 937 through 941 removed outlier: 4.327A pdb=" N HIS A 938 " --> pdb=" O GLU A1054 " (cutoff:3.500A) removed outlier: 3.599A pdb=" N ASN A1052 " --> pdb=" O GLY A 940 " (cutoff:3.500A) Processing sheet with id= 10, first strand: chain 'A' and resid 1005 through 1008 removed outlier: 3.936A pdb=" N ASN A1018 " --> pdb=" O SER A1006 " (cutoff:3.500A) Processing sheet with id= 11, first strand: chain 'A' and resid 1099 through 1104 removed outlier: 6.940A pdb=" N GLU A1099 " --> pdb=" O GLY A1195 " (cutoff:3.500A) removed outlier: 3.796A pdb=" N GLY A1103 " --> pdb=" O VAL A1191 " (cutoff:3.500A) removed outlier: 5.081A pdb=" N ILE A1074 " --> pdb=" O SER A1239 " (cutoff:3.500A) Processing sheet with id= 12, first strand: chain 'A' and resid 1159 through 1164 removed outlier: 3.595A pdb=" N CYS A1151 " --> pdb=" O PHE A1090 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N PHE A1090 " --> pdb=" O CYS A1151 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N ILE A1153 " --> pdb=" O TRP A1088 " (cutoff:3.500A) removed outlier: 4.503A pdb=" N TRP A1088 " --> pdb=" O ILE A1153 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLU A1091 " --> pdb=" O ASN A1203 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N GLU A1093 " --> pdb=" O HIS A1201 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N HIS A1201 " --> pdb=" O GLU A1093 " (cutoff:3.500A) Processing sheet with id= 13, first strand: chain 'A' and resid 1255 through 1262 removed outlier: 4.649A pdb=" N CYS A1269 " --> pdb=" O MET A1260 " (cutoff:3.500A) removed outlier: 5.770A pdb=" N GLY A1262 " --> pdb=" O PRO A1267 " (cutoff:3.500A) removed outlier: 4.723A pdb=" N LEU A1566 " --> pdb=" O PRO A1268 " (cutoff:3.500A) removed outlier: 4.099A pdb=" N LEU A1270 " --> pdb=" O PHE A1564 " (cutoff:3.500A) removed outlier: 4.868A pdb=" N ILE A1562 " --> pdb=" O LEU A1272 " (cutoff:3.500A) removed outlier: 6.745A pdb=" N VAL A1561 " --> pdb=" O PHE A1440 " (cutoff:3.500A) removed outlier: 3.651A pdb=" N GLN A1563 " --> pdb=" O ARG A1438 " (cutoff:3.500A) removed outlier: 4.368A pdb=" N SER A1436 " --> pdb=" O GLU A1565 " (cutoff:3.500A) removed outlier: 5.777A pdb=" N GLY A1567 " --> pdb=" O TYR A1434 " (cutoff:3.500A) removed outlier: 6.082A pdb=" N TYR A1434 " --> pdb=" O GLY A1567 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N LEU A1514 " --> pdb=" O VAL A1439 " (cutoff:3.500A) Processing sheet with id= 14, first strand: chain 'A' and resid 1286 through 1291 Processing sheet with id= 15, first strand: chain 'A' and resid 1471 through 1475 Processing sheet with id= 16, first strand: chain 'A' and resid 1616 through 1619 removed outlier: 3.746A pdb=" N GLU A1616 " --> pdb=" O GLN A1629 " (cutoff:3.500A) Processing sheet with id= 17, first strand: chain 'A' and resid 4177 through 4182 removed outlier: 5.367A pdb=" N TYR A4177 " --> pdb=" O ILE A4197 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N ILE A4197 " --> pdb=" O TYR A4177 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N GLY A4179 " --> pdb=" O PHE A4195 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N PHE A4195 " --> pdb=" O GLY A4179 " (cutoff:3.500A) Processing sheet with id= 18, first strand: chain 'C' and resid 47 through 52 removed outlier: 4.425A pdb=" N PHE C 48 " --> pdb=" O ALA C 38 " (cutoff:3.500A) removed outlier: 5.958A pdb=" N LYS C 34 " --> pdb=" O THR C 52 " (cutoff:3.500A) removed outlier: 5.488A pdb=" N LEU C 22 " --> pdb=" O LEU C 37 " (cutoff:3.500A) removed outlier: 10.071A pdb=" N ALA C 39 " --> pdb=" O VAL C 20 " (cutoff:3.500A) removed outlier: 13.705A pdb=" N VAL C 20 " --> pdb=" O ALA C 39 " (cutoff:3.500A) removed outlier: 6.530A pdb=" N GLU C 19 " --> pdb=" O ILE C 205 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N ASN C 203 " --> pdb=" O VAL C 21 " (cutoff:3.500A) Processing sheet with id= 19, first strand: chain 'C' and resid 71 through 74 removed outlier: 4.566A pdb=" N GLN C 71 " --> pdb=" O LEU C 108 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N LEU C 108 " --> pdb=" O GLN C 71 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N LEU C 73 " --> pdb=" O ALA C 106 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N HIS C 105 " --> pdb=" O MET C 150 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N ALA C 153 " --> pdb=" O ASP C 168 " (cutoff:3.500A) removed outlier: 9.087A pdb=" N ASP C 168 " --> pdb=" O ALA C 153 " (cutoff:3.500A) Processing sheet with id= 20, first strand: chain 'C' and resid 230 through 233 removed outlier: 3.584A pdb=" N GLU C 248 " --> pdb=" O CYS C 230 " (cutoff:3.500A) removed outlier: 6.254A pdb=" N VAL C 245 " --> pdb=" O ALA C 376 " (cutoff:3.500A) Processing sheet with id= 21, first strand: chain 'C' and resid 280 through 284 removed outlier: 3.773A pdb=" N GLU C 263 " --> pdb=" O ARG C 281 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N LEU C 262 " --> pdb=" O HIS C 218 " (cutoff:3.500A) removed outlier: 4.460A pdb=" N HIS C 218 " --> pdb=" O LEU C 262 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N PHE C 223 " --> pdb=" O PHE C 389 " (cutoff:3.500A) Processing sheet with id= 22, first strand: chain 'C' and resid 644 through 647 removed outlier: 5.829A pdb=" N ARG C 822 " --> pdb=" O ASN C 647 " (cutoff:3.500A) Processing sheet with id= 23, first strand: chain 'C' and resid 661 through 668 removed outlier: 3.795A pdb=" N TRP C 662 " --> pdb=" O LEU C 748 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N LEU C 748 " --> pdb=" O TRP C 662 " (cutoff:3.500A) removed outlier: 4.661A pdb=" N PHE C 664 " --> pdb=" O CYS C 746 " (cutoff:3.500A) removed outlier: 4.507A pdb=" N CYS C 746 " --> pdb=" O PHE C 664 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N SER C 754 " --> pdb=" O ASP C 749 " (cutoff:3.500A) Processing sheet with id= 24, first strand: chain 'C' and resid 829 through 832 removed outlier: 4.779A pdb=" N TYR C 829 " --> pdb=" O VAL C 840 " (cutoff:3.500A) Processing sheet with id= 25, first strand: chain 'C' and resid 891 through 894 Processing sheet with id= 26, first strand: chain 'C' and resid 937 through 941 removed outlier: 4.327A pdb=" N HIS C 938 " --> pdb=" O GLU C1054 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N ASN C1052 " --> pdb=" O GLY C 940 " (cutoff:3.500A) Processing sheet with id= 27, first strand: chain 'C' and resid 1005 through 1008 removed outlier: 3.936A pdb=" N ASN C1018 " --> pdb=" O SER C1006 " (cutoff:3.500A) Processing sheet with id= 28, first strand: chain 'C' and resid 1099 through 1104 removed outlier: 6.940A pdb=" N GLU C1099 " --> pdb=" O GLY C1195 " (cutoff:3.500A) removed outlier: 3.797A pdb=" N GLY C1103 " --> pdb=" O VAL C1191 " (cutoff:3.500A) removed outlier: 5.081A pdb=" N ILE C1074 " --> pdb=" O SER C1239 " (cutoff:3.500A) Processing sheet with id= 29, first strand: chain 'C' and resid 1159 through 1164 removed outlier: 3.594A pdb=" N CYS C1151 " --> pdb=" O PHE C1090 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N PHE C1090 " --> pdb=" O CYS C1151 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N ILE C1153 " --> pdb=" O TRP C1088 " (cutoff:3.500A) removed outlier: 4.502A pdb=" N TRP C1088 " --> pdb=" O ILE C1153 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLU C1091 " --> pdb=" O ASN C1203 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N GLU C1093 " --> pdb=" O HIS C1201 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N HIS C1201 " --> pdb=" O GLU C1093 " (cutoff:3.500A) Processing sheet with id= 30, first strand: chain 'C' and resid 1255 through 1262 removed outlier: 4.647A pdb=" N CYS C1269 " --> pdb=" O MET C1260 " (cutoff:3.500A) removed outlier: 5.769A pdb=" N GLY C1262 " --> pdb=" O PRO C1267 " (cutoff:3.500A) removed outlier: 4.723A pdb=" N LEU C1566 " --> pdb=" O PRO C1268 " (cutoff:3.500A) removed outlier: 4.098A pdb=" N LEU C1270 " --> pdb=" O PHE C1564 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N ILE C1562 " --> pdb=" O LEU C1272 " (cutoff:3.500A) removed outlier: 6.745A pdb=" N VAL C1561 " --> pdb=" O PHE C1440 " (cutoff:3.500A) removed outlier: 3.651A pdb=" N GLN C1563 " --> pdb=" O ARG C1438 " (cutoff:3.500A) removed outlier: 4.368A pdb=" N SER C1436 " --> pdb=" O GLU C1565 " (cutoff:3.500A) removed outlier: 5.778A pdb=" N GLY C1567 " --> pdb=" O TYR C1434 " (cutoff:3.500A) removed outlier: 6.083A pdb=" N TYR C1434 " --> pdb=" O GLY C1567 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N LEU C1514 " --> pdb=" O VAL C1439 " (cutoff:3.500A) Processing sheet with id= 31, first strand: chain 'C' and resid 1286 through 1291 Processing sheet with id= 32, first strand: chain 'C' and resid 1471 through 1475 Processing sheet with id= 33, first strand: chain 'C' and resid 1616 through 1619 removed outlier: 3.746A pdb=" N GLU C1616 " --> pdb=" O GLN C1629 " (cutoff:3.500A) Processing sheet with id= 34, first strand: chain 'C' and resid 4177 through 4182 removed outlier: 5.368A pdb=" N TYR C4177 " --> pdb=" O ILE C4197 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N ILE C4197 " --> pdb=" O TYR C4177 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N GLY C4179 " --> pdb=" O PHE C4195 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N PHE C4195 " --> pdb=" O GLY C4179 " (cutoff:3.500A) Processing sheet with id= 35, first strand: chain 'E' and resid 47 through 52 removed outlier: 4.425A pdb=" N PHE E 48 " --> pdb=" O ALA E 38 " (cutoff:3.500A) removed outlier: 5.958A pdb=" N LYS E 34 " --> pdb=" O THR E 52 " (cutoff:3.500A) removed outlier: 5.487A pdb=" N LEU E 22 " --> pdb=" O LEU E 37 " (cutoff:3.500A) removed outlier: 10.072A pdb=" N ALA E 39 " --> pdb=" O VAL E 20 " (cutoff:3.500A) removed outlier: 13.705A pdb=" N VAL E 20 " --> pdb=" O ALA E 39 " (cutoff:3.500A) removed outlier: 6.529A pdb=" N GLU E 19 " --> pdb=" O ILE E 205 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N ASN E 203 " --> pdb=" O VAL E 21 " (cutoff:3.500A) Processing sheet with id= 36, first strand: chain 'E' and resid 71 through 74 removed outlier: 4.566A pdb=" N GLN E 71 " --> pdb=" O LEU E 108 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N LEU E 108 " --> pdb=" O GLN E 71 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N LEU E 73 " --> pdb=" O ALA E 106 " (cutoff:3.500A) removed outlier: 4.375A pdb=" N HIS E 105 " --> pdb=" O MET E 150 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N ALA E 153 " --> pdb=" O ASP E 168 " (cutoff:3.500A) removed outlier: 9.087A pdb=" N ASP E 168 " --> pdb=" O ALA E 153 " (cutoff:3.500A) Processing sheet with id= 37, first strand: chain 'E' and resid 230 through 233 removed outlier: 3.584A pdb=" N GLU E 248 " --> pdb=" O CYS E 230 " (cutoff:3.500A) removed outlier: 6.255A pdb=" N VAL E 245 " --> pdb=" O ALA E 376 " (cutoff:3.500A) Processing sheet with id= 38, first strand: chain 'E' and resid 280 through 284 removed outlier: 3.773A pdb=" N GLU E 263 " --> pdb=" O ARG E 281 " (cutoff:3.500A) removed outlier: 3.984A pdb=" N LEU E 262 " --> pdb=" O HIS E 218 " (cutoff:3.500A) removed outlier: 4.460A pdb=" N HIS E 218 " --> pdb=" O LEU E 262 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N PHE E 223 " --> pdb=" O PHE E 389 " (cutoff:3.500A) Processing sheet with id= 39, first strand: chain 'E' and resid 644 through 647 removed outlier: 5.829A pdb=" N ARG E 822 " --> pdb=" O ASN E 647 " (cutoff:3.500A) Processing sheet with id= 40, first strand: chain 'E' and resid 661 through 668 removed outlier: 3.794A pdb=" N TRP E 662 " --> pdb=" O LEU E 748 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N LEU E 748 " --> pdb=" O TRP E 662 " (cutoff:3.500A) removed outlier: 4.661A pdb=" N PHE E 664 " --> pdb=" O CYS E 746 " (cutoff:3.500A) removed outlier: 4.507A pdb=" N CYS E 746 " --> pdb=" O PHE E 664 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N SER E 754 " --> pdb=" O ASP E 749 " (cutoff:3.500A) Processing sheet with id= 41, first strand: chain 'E' and resid 829 through 832 removed outlier: 4.779A pdb=" N TYR E 829 " --> pdb=" O VAL E 840 " (cutoff:3.500A) Processing sheet with id= 42, first strand: chain 'E' and resid 891 through 894 Processing sheet with id= 43, first strand: chain 'E' and resid 937 through 941 removed outlier: 4.327A pdb=" N HIS E 938 " --> pdb=" O GLU E1054 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N ASN E1052 " --> pdb=" O GLY E 940 " (cutoff:3.500A) Processing sheet with id= 44, first strand: chain 'E' and resid 1005 through 1008 removed outlier: 3.937A pdb=" N ASN E1018 " --> pdb=" O SER E1006 " (cutoff:3.500A) Processing sheet with id= 45, first strand: chain 'E' and resid 1099 through 1104 removed outlier: 6.940A pdb=" N GLU E1099 " --> pdb=" O GLY E1195 " (cutoff:3.500A) removed outlier: 3.796A pdb=" N GLY E1103 " --> pdb=" O VAL E1191 " (cutoff:3.500A) removed outlier: 5.081A pdb=" N ILE E1074 " --> pdb=" O SER E1239 " (cutoff:3.500A) Processing sheet with id= 46, first strand: chain 'E' and resid 1159 through 1164 removed outlier: 3.595A pdb=" N CYS E1151 " --> pdb=" O PHE E1090 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N PHE E1090 " --> pdb=" O CYS E1151 " (cutoff:3.500A) removed outlier: 4.061A pdb=" N ILE E1153 " --> pdb=" O TRP E1088 " (cutoff:3.500A) removed outlier: 4.503A pdb=" N TRP E1088 " --> pdb=" O ILE E1153 " (cutoff:3.500A) removed outlier: 3.540A pdb=" N GLU E1091 " --> pdb=" O ASN E1203 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N GLU E1093 " --> pdb=" O HIS E1201 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N HIS E1201 " --> pdb=" O GLU E1093 " (cutoff:3.500A) Processing sheet with id= 47, first strand: chain 'E' and resid 1255 through 1262 removed outlier: 4.648A pdb=" N CYS E1269 " --> pdb=" O MET E1260 " (cutoff:3.500A) removed outlier: 5.770A pdb=" N GLY E1262 " --> pdb=" O PRO E1267 " (cutoff:3.500A) removed outlier: 4.723A pdb=" N LEU E1566 " --> pdb=" O PRO E1268 " (cutoff:3.500A) removed outlier: 4.097A pdb=" N LEU E1270 " --> pdb=" O PHE E1564 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N ILE E1562 " --> pdb=" O LEU E1272 " (cutoff:3.500A) removed outlier: 6.745A pdb=" N VAL E1561 " --> pdb=" O PHE E1440 " (cutoff:3.500A) removed outlier: 3.651A pdb=" N GLN E1563 " --> pdb=" O ARG E1438 " (cutoff:3.500A) removed outlier: 4.367A pdb=" N SER E1436 " --> pdb=" O GLU E1565 " (cutoff:3.500A) removed outlier: 5.777A pdb=" N GLY E1567 " --> pdb=" O TYR E1434 " (cutoff:3.500A) removed outlier: 6.083A pdb=" N TYR E1434 " --> pdb=" O GLY E1567 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N LEU E1514 " --> pdb=" O VAL E1439 " (cutoff:3.500A) Processing sheet with id= 48, first strand: chain 'E' and resid 1286 through 1291 Processing sheet with id= 49, first strand: chain 'E' and resid 1471 through 1475 Processing sheet with id= 50, first strand: chain 'E' and resid 1616 through 1619 removed outlier: 3.746A pdb=" N GLU E1616 " --> pdb=" O GLN E1629 " (cutoff:3.500A) Processing sheet with id= 51, first strand: chain 'E' and resid 4177 through 4182 removed outlier: 5.368A pdb=" N TYR E4177 " --> pdb=" O ILE E4197 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N ILE E4197 " --> pdb=" O TYR E4177 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N GLY E4179 " --> pdb=" O PHE E4195 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N PHE E4195 " --> pdb=" O GLY E4179 " (cutoff:3.500A) Processing sheet with id= 52, first strand: chain 'G' and resid 47 through 52 removed outlier: 4.425A pdb=" N PHE G 48 " --> pdb=" O ALA G 38 " (cutoff:3.500A) removed outlier: 5.958A pdb=" N LYS G 34 " --> pdb=" O THR G 52 " (cutoff:3.500A) removed outlier: 5.487A pdb=" N LEU G 22 " --> pdb=" O LEU G 37 " (cutoff:3.500A) removed outlier: 10.072A pdb=" N ALA G 39 " --> pdb=" O VAL G 20 " (cutoff:3.500A) removed outlier: 13.705A pdb=" N VAL G 20 " --> pdb=" O ALA G 39 " (cutoff:3.500A) removed outlier: 6.530A pdb=" N GLU G 19 " --> pdb=" O ILE G 205 " (cutoff:3.500A) removed outlier: 4.210A pdb=" N ASN G 203 " --> pdb=" O VAL G 21 " (cutoff:3.500A) Processing sheet with id= 53, first strand: chain 'G' and resid 71 through 74 removed outlier: 4.566A pdb=" N GLN G 71 " --> pdb=" O LEU G 108 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N LEU G 108 " --> pdb=" O GLN G 71 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N LEU G 73 " --> pdb=" O ALA G 106 " (cutoff:3.500A) removed outlier: 4.374A pdb=" N HIS G 105 " --> pdb=" O MET G 150 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N ALA G 153 " --> pdb=" O ASP G 168 " (cutoff:3.500A) removed outlier: 9.087A pdb=" N ASP G 168 " --> pdb=" O ALA G 153 " (cutoff:3.500A) Processing sheet with id= 54, first strand: chain 'G' and resid 230 through 233 removed outlier: 3.584A pdb=" N GLU G 248 " --> pdb=" O CYS G 230 " (cutoff:3.500A) removed outlier: 6.255A pdb=" N VAL G 245 " --> pdb=" O ALA G 376 " (cutoff:3.500A) Processing sheet with id= 55, first strand: chain 'G' and resid 280 through 284 removed outlier: 3.773A pdb=" N GLU G 263 " --> pdb=" O ARG G 281 " (cutoff:3.500A) removed outlier: 3.985A pdb=" N LEU G 262 " --> pdb=" O HIS G 218 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N HIS G 218 " --> pdb=" O LEU G 262 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N PHE G 223 " --> pdb=" O PHE G 389 " (cutoff:3.500A) Processing sheet with id= 56, first strand: chain 'G' and resid 644 through 647 removed outlier: 5.829A pdb=" N ARG G 822 " --> pdb=" O ASN G 647 " (cutoff:3.500A) Processing sheet with id= 57, first strand: chain 'G' and resid 661 through 668 removed outlier: 3.794A pdb=" N TRP G 662 " --> pdb=" O LEU G 748 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N LEU G 748 " --> pdb=" O TRP G 662 " (cutoff:3.500A) removed outlier: 4.661A pdb=" N PHE G 664 " --> pdb=" O CYS G 746 " (cutoff:3.500A) removed outlier: 4.507A pdb=" N CYS G 746 " --> pdb=" O PHE G 664 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N SER G 754 " --> pdb=" O ASP G 749 " (cutoff:3.500A) Processing sheet with id= 58, first strand: chain 'G' and resid 829 through 832 removed outlier: 4.779A pdb=" N TYR G 829 " --> pdb=" O VAL G 840 " (cutoff:3.500A) Processing sheet with id= 59, first strand: chain 'G' and resid 891 through 894 Processing sheet with id= 60, first strand: chain 'G' and resid 937 through 941 removed outlier: 4.326A pdb=" N HIS G 938 " --> pdb=" O GLU G1054 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N ASN G1052 " --> pdb=" O GLY G 940 " (cutoff:3.500A) Processing sheet with id= 61, first strand: chain 'G' and resid 1005 through 1008 removed outlier: 3.936A pdb=" N ASN G1018 " --> pdb=" O SER G1006 " (cutoff:3.500A) Processing sheet with id= 62, first strand: chain 'G' and resid 1099 through 1104 removed outlier: 6.940A pdb=" N GLU G1099 " --> pdb=" O GLY G1195 " (cutoff:3.500A) removed outlier: 3.797A pdb=" N GLY G1103 " --> pdb=" O VAL G1191 " (cutoff:3.500A) removed outlier: 5.080A pdb=" N ILE G1074 " --> pdb=" O SER G1239 " (cutoff:3.500A) Processing sheet with id= 63, first strand: chain 'G' and resid 1159 through 1164 removed outlier: 3.594A pdb=" N CYS G1151 " --> pdb=" O PHE G1090 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N PHE G1090 " --> pdb=" O CYS G1151 " (cutoff:3.500A) removed outlier: 4.060A pdb=" N ILE G1153 " --> pdb=" O TRP G1088 " (cutoff:3.500A) removed outlier: 4.503A pdb=" N TRP G1088 " --> pdb=" O ILE G1153 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N GLU G1091 " --> pdb=" O ASN G1203 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N GLU G1093 " --> pdb=" O HIS G1201 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N HIS G1201 " --> pdb=" O GLU G1093 " (cutoff:3.500A) Processing sheet with id= 64, first strand: chain 'G' and resid 1255 through 1262 removed outlier: 4.648A pdb=" N CYS G1269 " --> pdb=" O MET G1260 " (cutoff:3.500A) removed outlier: 5.769A pdb=" N GLY G1262 " --> pdb=" O PRO G1267 " (cutoff:3.500A) removed outlier: 4.723A pdb=" N LEU G1566 " --> pdb=" O PRO G1268 " (cutoff:3.500A) removed outlier: 4.098A pdb=" N LEU G1270 " --> pdb=" O PHE G1564 " (cutoff:3.500A) removed outlier: 4.867A pdb=" N ILE G1562 " --> pdb=" O LEU G1272 " (cutoff:3.500A) removed outlier: 6.745A pdb=" N VAL G1561 " --> pdb=" O PHE G1440 " (cutoff:3.500A) removed outlier: 3.651A pdb=" N GLN G1563 " --> pdb=" O ARG G1438 " (cutoff:3.500A) removed outlier: 4.368A pdb=" N SER G1436 " --> pdb=" O GLU G1565 " (cutoff:3.500A) removed outlier: 5.778A pdb=" N GLY G1567 " --> pdb=" O TYR G1434 " (cutoff:3.500A) removed outlier: 6.083A pdb=" N TYR G1434 " --> pdb=" O GLY G1567 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N LEU G1514 " --> pdb=" O VAL G1439 " (cutoff:3.500A) Processing sheet with id= 65, first strand: chain 'G' and resid 1286 through 1291 Processing sheet with id= 66, first strand: chain 'G' and resid 1471 through 1475 Processing sheet with id= 67, first strand: chain 'G' and resid 1616 through 1619 removed outlier: 3.746A pdb=" N GLU G1616 " --> pdb=" O GLN G1629 " (cutoff:3.500A) Processing sheet with id= 68, first strand: chain 'G' and resid 4177 through 4182 removed outlier: 5.367A pdb=" N TYR G4177 " --> pdb=" O ILE G4197 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N ILE G4197 " --> pdb=" O TYR G4177 " (cutoff:3.500A) removed outlier: 4.128A pdb=" N GLY G4179 " --> pdb=" O PHE G4195 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N PHE G4195 " --> pdb=" O GLY G4179 " (cutoff:3.500A) Processing sheet with id= 69, first strand: chain 'B' and resid 2 through 7 removed outlier: 4.213A pdb=" N GLU B 3 " --> pdb=" O THR B 75 " (cutoff:3.500A) removed outlier: 6.595A pdb=" N ARG B 71 " --> pdb=" O ILE B 7 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N THR B 27 " --> pdb=" O ASP B 100 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N GLU B 102 " --> pdb=" O HIS B 25 " (cutoff:3.500A) removed outlier: 7.639A pdb=" N VAL B 23 " --> pdb=" O LEU B 104 " (cutoff:3.500A) removed outlier: 3.786A pdb=" N PHE B 46 " --> pdb=" O VAL B 24 " (cutoff:3.500A) Processing sheet with id= 70, first strand: chain 'D' and resid 2 through 7 removed outlier: 4.213A pdb=" N GLU D 3 " --> pdb=" O THR D 75 " (cutoff:3.500A) removed outlier: 6.595A pdb=" N ARG D 71 " --> pdb=" O ILE D 7 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N THR D 27 " --> pdb=" O ASP D 100 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N GLU D 102 " --> pdb=" O HIS D 25 " (cutoff:3.500A) removed outlier: 7.640A pdb=" N VAL D 23 " --> pdb=" O LEU D 104 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N PHE D 46 " --> pdb=" O VAL D 24 " (cutoff:3.500A) Processing sheet with id= 71, first strand: chain 'F' and resid 2 through 7 removed outlier: 4.212A pdb=" N GLU F 3 " --> pdb=" O THR F 75 " (cutoff:3.500A) removed outlier: 6.595A pdb=" N ARG F 71 " --> pdb=" O ILE F 7 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N THR F 27 " --> pdb=" O ASP F 100 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N GLU F 102 " --> pdb=" O HIS F 25 " (cutoff:3.500A) removed outlier: 7.641A pdb=" N VAL F 23 " --> pdb=" O LEU F 104 " (cutoff:3.500A) removed outlier: 3.785A pdb=" N PHE F 46 " --> pdb=" O VAL F 24 " (cutoff:3.500A) Processing sheet with id= 72, first strand: chain 'H' and resid 2 through 7 removed outlier: 4.214A pdb=" N GLU H 3 " --> pdb=" O THR H 75 " (cutoff:3.500A) removed outlier: 6.595A pdb=" N ARG H 71 " --> pdb=" O ILE H 7 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N THR H 27 " --> pdb=" O ASP H 100 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N GLU H 102 " --> pdb=" O HIS H 25 " (cutoff:3.500A) removed outlier: 7.641A pdb=" N VAL H 23 " --> pdb=" O LEU H 104 " (cutoff:3.500A) removed outlier: 3.786A pdb=" N PHE H 46 " --> pdb=" O VAL H 24 " (cutoff:3.500A) 3604 hydrogen bonds defined for protein. 10752 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 0 hydrogen bonds 0 hydrogen bond angles 0 basepair planarities 0 basepair parallelities 0 stacking parallelities Total time for adding SS restraints: 60.23 Time building geometry restraints manager: 35.02 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.21 - 1.35: 38786 1.35 - 1.49: 29100 1.49 - 1.62: 49250 1.62 - 1.76: 8 1.76 - 1.89: 1140 Bond restraints: 118284 Sorted by residual: bond pdb=" CAN F0U A5203 " pdb=" CAO F0U A5203 " ideal model delta sigma weight residual 1.478 1.348 0.130 2.00e-02 2.50e+03 4.24e+01 bond pdb=" CAN F0U C5203 " pdb=" CAO F0U C5203 " ideal model delta sigma weight residual 1.478 1.348 0.130 2.00e-02 2.50e+03 4.24e+01 bond pdb=" CAN F0U E5203 " pdb=" CAO F0U E5203 " ideal model delta sigma weight residual 1.478 1.348 0.130 2.00e-02 2.50e+03 4.24e+01 bond pdb=" CAN F0U G5203 " pdb=" CAO F0U G5203 " ideal model delta sigma weight residual 1.478 1.348 0.130 2.00e-02 2.50e+03 4.24e+01 bond pdb=" CAG F0U E5203 " pdb=" CAH F0U E5203 " ideal model delta sigma weight residual 1.501 1.391 0.110 2.00e-02 2.50e+03 3.02e+01 ... (remaining 118279 not shown) Histogram of bond angle deviations from ideal: 96.52 - 104.32: 1871 104.32 - 112.11: 54399 112.11 - 119.91: 49311 119.91 - 127.71: 54341 127.71 - 135.51: 1098 Bond angle restraints: 161020 Sorted by residual: angle pdb=" C PRO E2022 " pdb=" N LEU E2023 " pdb=" CA LEU E2023 " ideal model delta sigma weight residual 120.49 134.40 -13.91 1.42e+00 4.96e-01 9.59e+01 angle pdb=" C PRO G2022 " pdb=" N LEU G2023 " pdb=" CA LEU G2023 " ideal model delta sigma weight residual 120.49 134.38 -13.89 1.42e+00 4.96e-01 9.57e+01 angle pdb=" C PRO C2022 " pdb=" N LEU C2023 " pdb=" CA LEU C2023 " ideal model delta sigma weight residual 120.49 134.36 -13.87 1.42e+00 4.96e-01 9.54e+01 angle pdb=" C PRO A2022 " pdb=" N LEU A2023 " pdb=" CA LEU A2023 " ideal model delta sigma weight residual 120.49 134.36 -13.87 1.42e+00 4.96e-01 9.54e+01 angle pdb=" CA ARG C 998 " pdb=" CB ARG C 998 " pdb=" CG ARG C 998 " ideal model delta sigma weight residual 114.10 132.39 -18.29 2.00e+00 2.50e-01 8.36e+01 ... (remaining 161015 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 18.09: 62176 18.09 - 36.19: 6420 36.19 - 54.28: 1237 54.28 - 72.37: 263 72.37 - 90.46: 88 Dihedral angle restraints: 70184 sinusoidal: 23128 harmonic: 47056 Sorted by residual: dihedral pdb=" CA ASP C4018 " pdb=" C ASP C4018 " pdb=" N LEU C4019 " pdb=" CA LEU C4019 " ideal model delta harmonic sigma weight residual 180.00 148.18 31.82 0 5.00e+00 4.00e-02 4.05e+01 dihedral pdb=" CA ASP E4018 " pdb=" C ASP E4018 " pdb=" N LEU E4019 " pdb=" CA LEU E4019 " ideal model delta harmonic sigma weight residual 180.00 148.25 31.75 0 5.00e+00 4.00e-02 4.03e+01 dihedral pdb=" CA ASP G4018 " pdb=" C ASP G4018 " pdb=" N LEU G4019 " pdb=" CA LEU G4019 " ideal model delta harmonic sigma weight residual 180.00 148.25 31.75 0 5.00e+00 4.00e-02 4.03e+01 ... (remaining 70181 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.156: 18586 0.156 - 0.313: 362 0.313 - 0.469: 8 0.469 - 0.626: 0 0.626 - 0.782: 4 Chirality restraints: 18960 Sorted by residual: chirality pdb=" CG LEU E4017 " pdb=" CB LEU E4017 " pdb=" CD1 LEU E4017 " pdb=" CD2 LEU E4017 " both_signs ideal model delta sigma weight residual False -2.59 -1.81 -0.78 2.00e-01 2.50e+01 1.53e+01 chirality pdb=" CG LEU C4017 " pdb=" CB LEU C4017 " pdb=" CD1 LEU C4017 " pdb=" CD2 LEU C4017 " both_signs ideal model delta sigma weight residual False -2.59 -1.81 -0.78 2.00e-01 2.50e+01 1.53e+01 chirality pdb=" CG LEU A4017 " pdb=" CB LEU A4017 " pdb=" CD1 LEU A4017 " pdb=" CD2 LEU A4017 " both_signs ideal model delta sigma weight residual False -2.59 -1.81 -0.78 2.00e-01 2.50e+01 1.52e+01 ... (remaining 18957 not shown) Planarity restraints: 20816 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" CB TYR A4715 " -0.024 2.00e-02 2.50e+03 3.14e-02 1.97e+01 pdb=" CG TYR A4715 " 0.076 2.00e-02 2.50e+03 pdb=" CD1 TYR A4715 " -0.025 2.00e-02 2.50e+03 pdb=" CD2 TYR A4715 " -0.030 2.00e-02 2.50e+03 pdb=" CE1 TYR A4715 " -0.001 2.00e-02 2.50e+03 pdb=" CE2 TYR A4715 " 0.004 2.00e-02 2.50e+03 pdb=" CZ TYR A4715 " -0.002 2.00e-02 2.50e+03 pdb=" OH TYR A4715 " 0.000 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" CB TYR G4715 " -0.023 2.00e-02 2.50e+03 3.13e-02 1.95e+01 pdb=" CG TYR G4715 " 0.076 2.00e-02 2.50e+03 pdb=" CD1 TYR G4715 " -0.025 2.00e-02 2.50e+03 pdb=" CD2 TYR G4715 " -0.030 2.00e-02 2.50e+03 pdb=" CE1 TYR G4715 " -0.001 2.00e-02 2.50e+03 pdb=" CE2 TYR G4715 " 0.004 2.00e-02 2.50e+03 pdb=" CZ TYR G4715 " -0.002 2.00e-02 2.50e+03 pdb=" OH TYR G4715 " 0.001 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" CB TYR E4715 " 0.023 2.00e-02 2.50e+03 3.12e-02 1.95e+01 pdb=" CG TYR E4715 " -0.076 2.00e-02 2.50e+03 pdb=" CD1 TYR E4715 " 0.025 2.00e-02 2.50e+03 pdb=" CD2 TYR E4715 " 0.029 2.00e-02 2.50e+03 pdb=" CE1 TYR E4715 " 0.001 2.00e-02 2.50e+03 pdb=" CE2 TYR E4715 " -0.004 2.00e-02 2.50e+03 pdb=" CZ TYR E4715 " 0.002 2.00e-02 2.50e+03 pdb=" OH TYR E4715 " -0.001 2.00e-02 2.50e+03 ... (remaining 20813 not shown) Histogram of nonbonded interaction distances: 1.54 - 2.21: 8 2.21 - 2.88: 41375 2.88 - 3.56: 156012 3.56 - 4.23: 254535 4.23 - 4.90: 404894 Nonbonded interactions: 856824 Sorted by model distance: nonbonded pdb=" OE2 GLU A3893 " pdb="CA CA A5201 " model vdw 1.538 2.510 nonbonded pdb=" OE2 GLU C3893 " pdb="CA CA C5201 " model vdw 1.654 2.510 nonbonded pdb=" OE2 GLU G3893 " pdb="CA CA G5201 " model vdw 1.804 2.510 nonbonded pdb=" OE1 GLU C3893 " pdb="CA CA C5201 " model vdw 1.858 2.510 nonbonded pdb=" CD GLU C3893 " pdb="CA CA C5201 " model vdw 1.891 2.740 ... (remaining 856819 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model Found NCS groups: ncs_group { reference = chain 'A' selection = chain 'C' selection = chain 'E' selection = chain 'G' } ncs_group { reference = chain 'B' selection = chain 'D' selection = chain 'F' selection = chain 'H' } Set up NCS constraints Number of NCS constrained groups: 2 pdb_interpretation.ncs_group { reference = chain 'A' selection = chain 'C' selection = chain 'E' selection = chain 'G' } pdb_interpretation.ncs_group { reference = chain 'B' selection = chain 'D' selection = chain 'F' selection = chain 'H' } Set refine NCS operators NCS operators will be refined. Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=1.00 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as group one per residue Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 3.390 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.010 Assert all atoms have isotropic ADPs: 0.010 Construct map_model_manager: 0.090 Extract box with map and model: 20.210 Check model and map are aligned: 1.440 Set scattering table: 0.750 Process input model: 270.760 Find NCS groups from input model: 5.680 Set up NCS constraints: 0.580 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.030 Extract rigid body selections: 0.000 Check and reset occupancies: 0.020 Load rotamer database and sin/cos tables:2.160 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 305.130 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.6873 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.006 0.130 118284 Z= 0.359 Angle : 1.235 18.586 161020 Z= 0.615 Chirality : 0.061 0.782 18960 Planarity : 0.007 0.080 20816 Dihedral : 16.009 90.464 39528 Min Nonbonded Distance : 1.538 Molprobity Statistics. All-atom Clashscore : 5.47 Ramachandran Plot: Outliers : 0.06 % Allowed : 6.23 % Favored : 93.71 % Rotamer: Outliers : 1.67 % Allowed : 9.27 % Favored : 89.07 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.06 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -4.86 (0.05), residues: 14128 helix: -3.82 (0.04), residues: 5752 sheet: -1.59 (0.15), residues: 1104 loop : -2.98 (0.06), residues: 7272 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.048 0.003 TRP E 891 HIS 0.035 0.003 HIS C 273 PHE 0.045 0.003 PHE G4234 TYR 0.076 0.003 TYR A4715 ARG 0.037 0.003 ARG G1671 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 28256 Ramachandran restraints generated. 14128 Oldfield, 0 Emsley, 14128 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 28256 Ramachandran restraints generated. 14128 Oldfield, 0 Emsley, 14128 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 706 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 30 poor density : 676 time to evaluate : 2.143 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 30 outliers final: 8 residues processed: 694 average time/residue: 0.3202 time to fit residues: 349.4343 Evaluate side-chains 441 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 8 poor density : 433 time to evaluate : 2.162 Switching outliers to nearest non-outliers outliers start: 8 outliers final: 0 residues processed: 8 average time/residue: 0.2944 time to fit residues: 6.8270 Evaluate side-chains 48 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 13 poor density : 35 time to evaluate : 0.094 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 13 outliers final: 1 residues processed: 42 average time/residue: 0.1205 time to fit residues: 5.4215 Evaluate side-chains 26 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 25 time to evaluate : 0.068 Switching outliers to nearest non-outliers outliers start: 1 outliers final: 0 residues processed: 1 average time/residue: 0.0165 time to fit residues: 0.1156 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Rotamers are restrained with sigma=5.00 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1616 random chunks: chunk 1364 optimal weight: 5.9990 chunk 1224 optimal weight: 0.7980 chunk 679 optimal weight: 9.9990 chunk 418 optimal weight: 3.9990 chunk 826 optimal weight: 0.0170 chunk 654 optimal weight: 20.0000 chunk 1266 optimal weight: 0.0060 chunk 490 optimal weight: 0.0370 chunk 770 optimal weight: 0.0870 chunk 942 optimal weight: 0.0570 chunk 1467 optimal weight: 10.0000 overall best weight: 0.0408 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: E 44 ASN ** E 57 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** E 255 HIS E 533 ASN E 582 HIS E1127 HIS E1252 HIS E1274 HIS E1281 ASN E1458 HIS ** E1569 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** E1702 HIS E1952 GLN E2003 GLN E2107 GLN E2180 GLN E2188 ASN E2193 GLN E2245 GLN ** E2551 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** E2599 GLN E3647 HIS E3651 ASN E3766 GLN E3781 GLN E3814 GLN E3837 GLN E3851 ASN E3889 GLN E3906 GLN E3950 ASN E3970 GLN E4034 ASN E4037 ASN E4124 ASN E4574 ASN E4650 HIS E4832 HIS E4833 ASN E4857 ASN E4886 HIS Total number of N/Q/H flips: 38 Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: D 31 GLN D 87 HIS Total number of N/Q/H flips: 2 ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.6879 moved from start: 0.2604 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.003 0.044 118284 Z= 0.170 Angle : 0.679 11.098 161020 Z= 0.336 Chirality : 0.041 0.177 18960 Planarity : 0.005 0.062 20816 Dihedral : 5.287 27.224 17144 Min Nonbonded Distance : 1.963 Molprobity Statistics. All-atom Clashscore : 10.65 Ramachandran Plot: Outliers : 0.00 % Allowed : 3.91 % Favored : 96.09 % Rotamer: Outliers : 0.12 % Allowed : 6.75 % Favored : 93.14 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.00 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -3.62 (0.06), residues: 14128 helix: -2.56 (0.06), residues: 5728 sheet: -1.28 (0.15), residues: 1076 loop : -2.45 (0.06), residues: 7324 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.025 0.002 TRP E1005 HIS 0.014 0.001 HIS G2253 PHE 0.044 0.001 PHE A3962 TYR 0.029 0.001 TYR C1435 ARG 0.015 0.001 ARG B 40 *********************** REFINEMENT MACRO_CYCLE 2 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 21402 Ramachandran restraints generated. 10701 Oldfield, 0 Emsley, 10701 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 21402 Ramachandran restraints generated. 10701 Oldfield, 0 Emsley, 10701 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 548 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 3 poor density : 545 time to evaluate : 2.156 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 3 outliers final: 0 residues processed: 548 average time/residue: 0.3170 time to fit residues: 279.6353 Evaluate side-chains 383 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 383 time to evaluate : 2.206 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 2.9032 Evaluate side-chains 28 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 28 time to evaluate : 0.069 Fit side-chains revert: symmetry clash revert: symmetry clash outliers start: 0 outliers final: 0 residues processed: 28 average time/residue: 0.1479 time to fit residues: 4.4139 Evaluate side-chains 24 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 24 time to evaluate : 0.063 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 0.0846 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Rotamers are restrained with sigma=4.50 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1616 random chunks: chunk 815 optimal weight: 3.9990 chunk 455 optimal weight: 2.9990 chunk 1221 optimal weight: 4.9990 chunk 999 optimal weight: 6.9990 chunk 404 optimal weight: 10.0000 chunk 1470 optimal weight: 10.0000 chunk 1588 optimal weight: 5.9990 chunk 1309 optimal weight: 20.0000 chunk 1457 optimal weight: 9.9990 chunk 501 optimal weight: 9.9990 chunk 1179 optimal weight: 0.4980 overall best weight: 3.6988 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: E 57 ASN E 79 GLN E 98 HIS ** E 284 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E 634 GLN E1084 GLN ** E1125 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E1158 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E1679 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** E1952 GLN ** E1973 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** E2041 HIS E2193 GLN ** E2498 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E2551 ASN ** E3667 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E3781 GLN E3814 GLN E3833 GLN E3977 GLN E4133 GLN E4246 GLN E4574 ASN ** E4707 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E4812 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E4946 GLN Total number of N/Q/H flips: 17 Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: B 25 HIS B 87 HIS Total number of N/Q/H flips: 2 ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7154 moved from start: 0.3953 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.004 0.090 118284 Z= 0.277 Angle : 0.729 13.281 161020 Z= 0.370 Chirality : 0.043 0.177 18960 Planarity : 0.007 0.231 20816 Dihedral : 5.124 43.191 17144 Min Nonbonded Distance : 2.082 Molprobity Statistics. All-atom Clashscore : 16.43 Ramachandran Plot: Outliers : 0.00 % Allowed : 5.55 % Favored : 94.45 % Rotamer: Outliers : 0.27 % Allowed : 7.44 % Favored : 92.28 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.03 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -2.95 (0.06), residues: 14128 helix: -1.90 (0.06), residues: 5940 sheet: -1.62 (0.15), residues: 1144 loop : -2.01 (0.07), residues: 7044 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.033 0.003 TRP E5019 HIS 0.007 0.001 HIS G5003 PHE 0.038 0.002 PHE C3992 TYR 0.056 0.002 TYR A 117 ARG 0.072 0.001 ARG G 15 *********************** REFINEMENT MACRO_CYCLE 3 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 21192 Ramachandran restraints generated. 10596 Oldfield, 0 Emsley, 10596 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 21192 Ramachandran restraints generated. 10596 Oldfield, 0 Emsley, 10596 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 488 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 6 poor density : 482 time to evaluate : 1.944 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 6 outliers final: 2 residues processed: 485 average time/residue: 0.2903 time to fit residues: 225.0970 Evaluate side-chains 351 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 2 poor density : 349 time to evaluate : 2.185 Switching outliers to nearest non-outliers outliers start: 2 outliers final: 0 residues processed: 2 average time/residue: 0.2312 time to fit residues: 3.8419 Evaluate side-chains 29 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 28 time to evaluate : 0.069 Fit side-chains revert: symmetry clash outliers start: 1 outliers final: 0 residues processed: 28 average time/residue: 0.1451 time to fit residues: 4.3488 Evaluate side-chains 18 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 18 time to evaluate : 0.075 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 0.0938 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Rotamers are restrained with sigma=4.00 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1616 random chunks: chunk 1452 optimal weight: 0.0970 chunk 1105 optimal weight: 0.0970 chunk 762 optimal weight: 2.9990 chunk 162 optimal weight: 0.0040 chunk 701 optimal weight: 0.0370 chunk 987 optimal weight: 4.9990 chunk 1475 optimal weight: 10.0000 chunk 1562 optimal weight: 9.9990 chunk 770 optimal weight: 20.0000 chunk 1398 optimal weight: 10.0000 chunk 420 optimal weight: 3.9990 overall best weight: 0.6468 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: E 79 GLN ** E 105 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E 255 HIS ** E 284 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E 350 HIS E 475 GLN ** E 618 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E1158 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** E1663 HIS E1949 GLN E2498 HIS E3651 ASN E3781 GLN E3833 GLN E4246 GLN E4574 ASN Total number of N/Q/H flips: 12 Analyzing N/Q/H residues for possible flip corrections... No N/Q/H corrections needed this macrocycle ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7086 moved from start: 0.4119 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.003 0.069 118284 Z= 0.182 Angle : 0.661 9.731 161020 Z= 0.324 Chirality : 0.042 0.225 18960 Planarity : 0.005 0.099 20816 Dihedral : 4.824 32.909 17144 Min Nonbonded Distance : 2.093 Molprobity Statistics. All-atom Clashscore : 12.96 Ramachandran Plot: Outliers : 0.00 % Allowed : 4.84 % Favored : 95.16 % Rotamer: Outliers : 0.12 % Allowed : 4.69 % Favored : 95.19 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.00 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -2.62 (0.06), residues: 14128 helix: -1.57 (0.06), residues: 5908 sheet: -1.45 (0.15), residues: 1136 loop : -1.88 (0.07), residues: 7084 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.028 0.002 TRP E1005 HIS 0.035 0.001 HIS C 98 PHE 0.039 0.002 PHE B 99 TYR 0.032 0.002 TYR G 103 ARG 0.042 0.001 ARG E 110 *********************** REFINEMENT MACRO_CYCLE 4 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 20982 Ramachandran restraints generated. 10491 Oldfield, 0 Emsley, 10491 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 20982 Ramachandran restraints generated. 10491 Oldfield, 0 Emsley, 10491 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 469 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 3 poor density : 466 time to evaluate : 2.164 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 3 outliers final: 1 residues processed: 467 average time/residue: 0.3014 time to fit residues: 228.7855 Evaluate side-chains 362 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 361 time to evaluate : 3.671 Switching outliers to nearest non-outliers outliers start: 1 outliers final: 0 residues processed: 1 average time/residue: 0.2294 time to fit residues: 3.4854 Evaluate side-chains 29 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 29 time to evaluate : 0.070 Fit side-chains revert: symmetry clash outliers start: 0 outliers final: 0 residues processed: 29 average time/residue: 0.1653 time to fit residues: 5.1208 Evaluate side-chains 19 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 19 time to evaluate : 0.071 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 0.0971 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Rotamers are restrained with sigma=3.50 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1616 random chunks: chunk 1300 optimal weight: 30.0000 chunk 886 optimal weight: 9.9990 chunk 22 optimal weight: 3.9990 chunk 1163 optimal weight: 0.0670 chunk 644 optimal weight: 2.9990 chunk 1332 optimal weight: 0.0040 chunk 1079 optimal weight: 10.0000 chunk 1 optimal weight: 6.9990 chunk 797 optimal weight: 0.9990 chunk 1402 optimal weight: 0.5980 chunk 394 optimal weight: 10.0000 overall best weight: 0.9334 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: ** E 284 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E 475 GLN ** E 618 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** E 994 ASN ** E1158 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E1458 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E1460 HIS E1702 HIS E4020 GLN E4246 GLN E4574 ASN ** E4812 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** Total number of N/Q/H flips: 7 Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: F 53 GLN F 87 HIS Total number of N/Q/H flips: 2 ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7084 moved from start: 0.4225 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.003 0.069 118284 Z= 0.201 Angle : 0.668 10.197 161020 Z= 0.327 Chirality : 0.042 0.340 18960 Planarity : 0.005 0.169 20816 Dihedral : 4.783 35.099 17144 Min Nonbonded Distance : 2.091 Molprobity Statistics. All-atom Clashscore : 14.52 Ramachandran Plot: Outliers : 0.00 % Allowed : 4.78 % Favored : 95.22 % Rotamer: Outliers : 0.08 % Allowed : 2.87 % Favored : 97.05 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.00 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -2.51 (0.07), residues: 14128 helix: -1.43 (0.06), residues: 5892 sheet: -1.56 (0.14), residues: 1168 loop : -1.85 (0.07), residues: 7068 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.021 0.002 TRP E 356 HIS 0.016 0.001 HIS A 98 PHE 0.051 0.002 PHE G3992 TYR 0.036 0.002 TYR G 117 ARG 0.067 0.001 ARG E 76 *********************** REFINEMENT MACRO_CYCLE 5 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 20982 Ramachandran restraints generated. 10491 Oldfield, 0 Emsley, 10491 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 20982 Ramachandran restraints generated. 10491 Oldfield, 0 Emsley, 10491 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 453 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 453 time to evaluate : 2.174 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 0 outliers final: 0 residues processed: 453 average time/residue: 0.2886 time to fit residues: 215.6415 Evaluate side-chains 344 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 344 time to evaluate : 2.185 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 3.0122 Evaluate side-chains 29 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 2 poor density : 27 time to evaluate : 0.069 Fit side-chains outliers start: 2 outliers final: 1 residues processed: 28 average time/residue: 0.1531 time to fit residues: 4.5704 Evaluate side-chains 21 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 20 time to evaluate : 0.069 Switching outliers to nearest non-outliers outliers start: 1 outliers final: 0 residues processed: 1 average time/residue: 0.0109 time to fit residues: 0.1093 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Rotamers are restrained with sigma=3.00 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1616 random chunks: chunk 525 optimal weight: 9.9990 chunk 1406 optimal weight: 6.9990 chunk 308 optimal weight: 20.0000 chunk 917 optimal weight: 0.5980 chunk 385 optimal weight: 0.8980 chunk 1563 optimal weight: 10.0000 chunk 1297 optimal weight: 4.9990 chunk 723 optimal weight: 0.0060 chunk 130 optimal weight: 0.0470 chunk 517 optimal weight: 1.9990 chunk 820 optimal weight: 0.0270 overall best weight: 0.3152 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: E 98 HIS E 113 HIS ** E 284 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E 475 GLN E 489 ASN ** E 618 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E 624 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** E1035 ASN ** E1158 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** E1460 HIS E2551 ASN E3781 GLN E3833 GLN ** E3927 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** E3977 GLN E4574 ASN Total number of N/Q/H flips: 11 Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: F 87 HIS Total number of N/Q/H flips: 1 ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7041 moved from start: 0.4385 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.002 0.056 118284 Z= 0.140 Angle : 0.615 13.700 161020 Z= 0.298 Chirality : 0.041 0.206 18960 Planarity : 0.004 0.069 20816 Dihedral : 4.425 26.944 17144 Min Nonbonded Distance : 2.089 Molprobity Statistics. All-atom Clashscore : 11.08 Ramachandran Plot: Outliers : 0.00 % Allowed : 4.47 % Favored : 95.53 % Rotamer: Outliers : 0.04 % Allowed : 2.75 % Favored : 97.21 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.00 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -2.27 (0.07), residues: 14128 helix: -1.18 (0.06), residues: 5872 sheet: -1.29 (0.16), residues: 1060 loop : -1.79 (0.07), residues: 7196 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.024 0.001 TRP A1005 HIS 0.021 0.001 HIS E 98 PHE 0.045 0.001 PHE E3962 TYR 0.034 0.001 TYR E 103 ARG 0.009 0.001 ARG B 40 *********************** REFINEMENT MACRO_CYCLE 6 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 20982 Ramachandran restraints generated. 10491 Oldfield, 0 Emsley, 10491 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 20982 Ramachandran restraints generated. 10491 Oldfield, 0 Emsley, 10491 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 472 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 472 time to evaluate : 2.289 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 0 outliers final: 0 residues processed: 472 average time/residue: 0.2972 time to fit residues: 228.4177 Evaluate side-chains 361 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 361 time to evaluate : 2.179 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 2.9899 Evaluate side-chains 26 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 25 time to evaluate : 0.068 Fit side-chains revert: symmetry clash outliers start: 1 outliers final: 0 residues processed: 25 average time/residue: 0.1528 time to fit residues: 4.0878 Evaluate side-chains 21 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 21 time to evaluate : 0.069 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 0.0925 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Rotamers are restrained with sigma=2.50 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1616 random chunks: chunk 1507 optimal weight: 0.3980 chunk 176 optimal weight: 0.7980 chunk 890 optimal weight: 40.0000 chunk 1141 optimal weight: 10.0000 chunk 884 optimal weight: 0.0070 chunk 1316 optimal weight: 2.9990 chunk 873 optimal weight: 5.9990 chunk 1557 optimal weight: 0.0010 chunk 974 optimal weight: 0.4980 chunk 949 optimal weight: 2.9990 chunk 719 optimal weight: 1.9990 overall best weight: 0.3404 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: E 197 GLN ** E 284 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E 475 GLN ** E 618 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** E 624 ASN E 678 GLN ** E1158 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** E1458 HIS E1460 HIS E2551 ASN E3781 GLN E3814 GLN E3833 GLN E3909 ASN ** E3927 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** E3977 GLN E4246 GLN E4574 ASN E4946 GLN ** E5003 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** Total number of N/Q/H flips: 15 Analyzing N/Q/H residues for possible flip corrections... No N/Q/H corrections needed this macrocycle ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7035 moved from start: 0.4603 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.002 0.057 118284 Z= 0.142 Angle : 0.610 10.571 161020 Z= 0.296 Chirality : 0.040 0.212 18960 Planarity : 0.004 0.054 20816 Dihedral : 4.288 27.394 17144 Min Nonbonded Distance : 2.083 Molprobity Statistics. All-atom Clashscore : 11.18 Ramachandran Plot: Outliers : 0.00 % Allowed : 4.61 % Favored : 95.39 % Rotamer: Outliers : 0.04 % Allowed : 2.02 % Favored : 97.94 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.00 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -2.03 (0.07), residues: 14128 helix: -0.95 (0.07), residues: 5840 sheet: -1.25 (0.15), residues: 1068 loop : -1.66 (0.07), residues: 7220 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.019 0.001 TRP C1005 HIS 0.013 0.001 HIS C 98 PHE 0.034 0.001 PHE C 478 TYR 0.032 0.001 TYR E 103 ARG 0.016 0.001 ARG D 40 *********************** REFINEMENT MACRO_CYCLE 7 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 20982 Ramachandran restraints generated. 10491 Oldfield, 0 Emsley, 10491 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 20982 Ramachandran restraints generated. 10491 Oldfield, 0 Emsley, 10491 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 484 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 483 time to evaluate : 2.194 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 1 outliers final: 0 residues processed: 483 average time/residue: 0.2995 time to fit residues: 235.5088 Evaluate side-chains 351 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 351 time to evaluate : 2.201 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 2.9862 Evaluate side-chains 25 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 25 time to evaluate : 0.069 Fit side-chains revert: symmetry clash revert: symmetry clash outliers start: 0 outliers final: 0 residues processed: 25 average time/residue: 0.1276 time to fit residues: 3.4555 Evaluate side-chains 20 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 20 time to evaluate : 0.069 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 0.0926 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Rotamers are restrained with sigma=2.00 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1616 random chunks: chunk 963 optimal weight: 5.9990 chunk 622 optimal weight: 0.5980 chunk 930 optimal weight: 2.9990 chunk 469 optimal weight: 0.0050 chunk 306 optimal weight: 8.9990 chunk 301 optimal weight: 9.9990 chunk 990 optimal weight: 0.4980 chunk 1061 optimal weight: 20.0000 chunk 770 optimal weight: 0.9980 chunk 145 optimal weight: 3.9990 chunk 1224 optimal weight: 1.9990 overall best weight: 0.8196 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: ** E 105 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E 475 GLN ** E 618 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E1158 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** E1460 HIS ** E1952 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** E2551 ASN E3781 GLN E3833 GLN ** E3927 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** E4574 ASN Total number of N/Q/H flips: 6 Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: F 87 HIS Total number of N/Q/H flips: 1 ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7050 moved from start: 0.4798 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.002 0.057 118284 Z= 0.153 Angle : 0.623 16.955 161020 Z= 0.303 Chirality : 0.041 0.174 18960 Planarity : 0.004 0.075 20816 Dihedral : 4.224 26.541 17144 Min Nonbonded Distance : 2.054 Molprobity Statistics. All-atom Clashscore : 11.86 Ramachandran Plot: Outliers : 0.03 % Allowed : 4.42 % Favored : 95.55 % Rotamer: Outliers : 0.04 % Allowed : 1.74 % Favored : 98.22 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.00 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -1.93 (0.07), residues: 14128 helix: -0.87 (0.07), residues: 5828 sheet: -1.14 (0.15), residues: 1044 loop : -1.62 (0.07), residues: 7256 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.023 0.001 TRP E4716 HIS 0.007 0.001 HIS E 98 PHE 0.043 0.001 PHE G3992 TYR 0.031 0.001 TYR C 103 ARG 0.021 0.001 ARG A 76 *********************** REFINEMENT MACRO_CYCLE 8 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 20982 Ramachandran restraints generated. 10491 Oldfield, 0 Emsley, 10491 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 20982 Ramachandran restraints generated. 10491 Oldfield, 0 Emsley, 10491 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 464 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 464 time to evaluate : 2.191 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 0 outliers final: 0 residues processed: 464 average time/residue: 0.2912 time to fit residues: 221.9188 Evaluate side-chains 345 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 345 time to evaluate : 2.218 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 3.0406 Evaluate side-chains 28 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 27 time to evaluate : 0.069 Fit side-chains revert: symmetry clash revert: symmetry clash outliers start: 1 outliers final: 0 residues processed: 27 average time/residue: 0.1578 time to fit residues: 4.5371 Evaluate side-chains 22 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 22 time to evaluate : 0.069 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 0.0931 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Rotamers are restrained with sigma=1.50 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1616 random chunks: chunk 1416 optimal weight: 10.0000 chunk 1492 optimal weight: 20.0000 chunk 1361 optimal weight: 0.0020 chunk 1451 optimal weight: 4.9990 chunk 1491 optimal weight: 20.0000 chunk 873 optimal weight: 0.3980 chunk 632 optimal weight: 10.0000 chunk 1139 optimal weight: 7.9990 chunk 445 optimal weight: 0.5980 chunk 1311 optimal weight: 9.9990 chunk 1372 optimal weight: 20.0000 overall best weight: 2.7992 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: ** G 105 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** ** G 475 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** ** G 618 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** ** G 838 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** ** G1158 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** G1458 HIS G1460 HIS G1560 ASN G2551 ASN G3781 GLN G3833 GLN ** G3927 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** G4574 ASN ** G4812 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** Total number of N/Q/H flips: 7 Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: B 87 HIS Total number of N/Q/H flips: 1 ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7183 moved from start: 0.5360 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.004 0.071 118284 Z= 0.233 Angle : 0.677 14.180 161020 Z= 0.338 Chirality : 0.042 0.291 18960 Planarity : 0.005 0.110 20816 Dihedral : 4.418 25.991 17144 Min Nonbonded Distance : 1.933 Molprobity Statistics. All-atom Clashscore : 15.73 Ramachandran Plot: Outliers : 0.00 % Allowed : 4.98 % Favored : 95.02 % Rotamer: Outliers : 0.08 % Allowed : 0.66 % Favored : 99.26 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.00 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -1.80 (0.07), residues: 14128 helix: -0.77 (0.07), residues: 5928 sheet: -1.32 (0.15), residues: 1096 loop : -1.48 (0.07), residues: 7104 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.021 0.002 TRP G1237 HIS 0.008 0.001 HIS C2441 PHE 0.027 0.002 PHE E3992 TYR 0.043 0.002 TYR C 117 ARG 0.025 0.001 ARG A1131 *********************** REFINEMENT MACRO_CYCLE 9 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 14128 Ramachandran restraints generated. 7064 Oldfield, 0 Emsley, 7064 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 14128 Ramachandran restraints generated. 7064 Oldfield, 0 Emsley, 7064 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 448 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 447 time to evaluate : 2.170 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 1 outliers final: 0 residues processed: 447 average time/residue: 0.2944 time to fit residues: 216.2487 Evaluate side-chains 333 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 333 time to evaluate : 2.190 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 2.9870 Evaluate side-chains 24 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 23 time to evaluate : 0.069 Fit side-chains revert: symmetry clash revert: symmetry clash outliers start: 1 outliers final: 0 residues processed: 23 average time/residue: 0.1574 time to fit residues: 3.8703 Evaluate side-chains 18 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 18 time to evaluate : 0.068 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 0.0920 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Rotamers are restrained with sigma=1.00 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1616 random chunks: chunk 1446 optimal weight: 7.9990 chunk 953 optimal weight: 3.9990 chunk 1534 optimal weight: 5.9990 chunk 936 optimal weight: 0.0980 chunk 728 optimal weight: 1.9990 chunk 1066 optimal weight: 9.9990 chunk 1609 optimal weight: 5.9990 chunk 1481 optimal weight: 9.9990 chunk 1282 optimal weight: 5.9990 chunk 133 optimal weight: 0.0010 chunk 990 optimal weight: 8.9990 overall best weight: 2.4192 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: ** E 105 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** E 201 ASN ** E 475 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E 618 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E 838 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** ** E1125 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** E2112 GLN E3781 GLN ** E3927 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** E4574 ASN E4946 GLN Total number of N/Q/H flips: 5 Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: F 87 HIS Total number of N/Q/H flips: 1 ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7192 moved from start: 0.5687 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.003 0.053 118284 Z= 0.198 Angle : 0.666 16.661 161020 Z= 0.328 Chirality : 0.042 0.227 18960 Planarity : 0.004 0.056 20816 Dihedral : 4.415 25.026 17144 Min Nonbonded Distance : 2.024 Molprobity Statistics. All-atom Clashscore : 14.96 Ramachandran Plot: Outliers : 0.00 % Allowed : 5.58 % Favored : 94.42 % Rotamer: Outliers : 0.08 % Allowed : 0.58 % Favored : 99.34 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.00 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -1.95 (0.07), residues: 14128 helix: -0.91 (0.07), residues: 5808 sheet: -1.52 (0.15), residues: 1120 loop : -1.52 (0.07), residues: 7200 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.020 0.001 TRP E1005 HIS 0.006 0.001 HIS C2441 PHE 0.029 0.002 PHE A3880 TYR 0.061 0.002 TYR C 117 ARG 0.017 0.001 ARG C 110 ********************** REFINEMENT MACRO_CYCLE 10 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 14128 Ramachandran restraints generated. 7064 Oldfield, 0 Emsley, 7064 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 14128 Ramachandran restraints generated. 7064 Oldfield, 0 Emsley, 7064 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 441 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 440 time to evaluate : 2.214 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash outliers start: 1 outliers final: 1 residues processed: 441 average time/residue: 0.2888 time to fit residues: 211.2863 Evaluate side-chains 344 residues out of total 3059 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 343 time to evaluate : 2.251 Switching outliers to nearest non-outliers outliers start: 1 outliers final: 0 residues processed: 1 average time/residue: 0.2274 time to fit residues: 3.4060 Evaluate side-chains 24 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1 poor density : 23 time to evaluate : 0.069 Fit side-chains revert: symmetry clash revert: symmetry clash outliers start: 1 outliers final: 0 residues processed: 23 average time/residue: 0.1401 time to fit residues: 3.4777 Evaluate side-chains 19 residues out of total 88 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 0 poor density : 19 time to evaluate : 0.069 Switching outliers to nearest non-outliers outliers start: 0 outliers final: 0 residues processed: 0 time to fit residues: 0.0926 ------------------------------------------------------------------------------- Set rotamer restraints ********************** Rotamers are restrained with sigma=1.00 ------------------------------------------------------------------------------- XYZ refinement ************** Weight determination summary: number of chunks: 1616 random chunks: chunk 786 optimal weight: 0.9990 chunk 1018 optimal weight: 4.9990 chunk 1365 optimal weight: 2.9990 chunk 392 optimal weight: 3.9990 chunk 1182 optimal weight: 8.9990 chunk 189 optimal weight: 3.9990 chunk 356 optimal weight: 1.9990 chunk 1284 optimal weight: 0.9990 chunk 537 optimal weight: 8.9990 chunk 1318 optimal weight: 5.9990 chunk 162 optimal weight: 0.1980 overall best weight: 1.4388 ------------------------------------------------------------------------------- NQH flips ********* Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: ** E 105 HIS ** both conformations clash, **PLEASE CHECK MANUALLY** ** E 475 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E 618 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E1125 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E2213 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** E2260 ASN E3851 ASN ** E3909 ASN ** both conformations clash, **PLEASE CHECK MANUALLY** ** E3927 GLN ** both conformations clash, **PLEASE CHECK MANUALLY** E4574 ASN Total number of N/Q/H flips: 3 Analyzing N/Q/H residues for possible flip corrections... Flipped N/Q/H residues before XYZ refinement: B 87 HIS Total number of N/Q/H flips: 1 ------------------------------------------------------------------------------- Update NCS operators ******************** ------------------------------------------------------------------------------- ADP refinement ************** |-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------| | r_work = 0.4000 r_free = 0.4000 target = 0.105086 restraints weight = None | |-----------------------------------------------------------------------------| |-group b-factor refinement (macro cycle = 1; iterations = 47)----------------| | r_work = 0.3563 r_free = 0.3563 target = 0.082972 restraints weight = 192919.890| |-----------------------------------------------------------------------------| |-group b-factor refinement (macro cycle = 2; iterations = 37)----------------| | r_work = 0.3578 r_free = 0.3578 target = 0.083041 restraints weight = 154963.793| |-----------------------------------------------------------------------------| |-group b-factor refinement (macro cycle = 3; iterations = 24)----------------| | r_work = 0.3581 r_free = 0.3581 target = 0.083609 restraints weight = 130968.829| |-----------------------------------------------------------------------------| r_work (final): 0.3439 |-group b-factor refinement (macro cycle = 0; iterations = 0)-----------------| | r_work = 0.3448 r_free = 0.3448 target = 0.068532 restraints weight = None | |-----------------------------------------------------------------------------| |-group b-factor refinement (macro cycle = 1; iterations = 30)----------------| | r_work = 0.3142 r_free = 0.3142 target = 0.056028 restraints weight = 5368.901| |-----------------------------------------------------------------------------| |-group b-factor refinement (macro cycle = 2; iterations = 29)----------------| | r_work = 0.3162 r_free = 0.3162 target = 0.056842 restraints weight = 4430.945| |-----------------------------------------------------------------------------| |-group b-factor refinement (macro cycle = 3; iterations = 29)----------------| | r_work = 0.3176 r_free = 0.3176 target = 0.057471 restraints weight = 3853.978| |-----------------------------------------------------------------------------| r_work (final): 0.3123 ------------------------------------------------------------------------------- Occupancy refinement ******************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7468 moved from start: 0.5802 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.003 0.054 118284 Z= 0.177 Angle : 0.647 12.013 161020 Z= 0.319 Chirality : 0.041 0.219 18960 Planarity : 0.004 0.131 20816 Dihedral : 4.367 25.345 17144 Min Nonbonded Distance : 1.937 Molprobity Statistics. All-atom Clashscore : 15.11 Ramachandran Plot: Outliers : 0.00 % Allowed : 5.49 % Favored : 94.51 % Rotamer: Outliers : 0.04 % Allowed : 0.39 % Favored : 99.57 % Cbeta Deviations : 0.00 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.00 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -1.92 (0.07), residues: 14128 helix: -0.90 (0.07), residues: 5820 sheet: -1.51 (0.15), residues: 1120 loop : -1.50 (0.07), residues: 7188 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.019 0.001 TRP E1005 HIS 0.005 0.001 HIS D 25 PHE 0.036 0.002 PHE C1464 TYR 0.038 0.001 TYR C 117 ARG 0.025 0.001 ARG E 76 Origin is already at (0, 0, 0), no shifts will be applied =============================================================================== Job complete usr+sys time: 14610.72 seconds wall clock time: 260 minutes 42.23 seconds (15642.23 seconds total)