phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7ckr_30391/11_2022/7ckr_30391_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7ckr_30391/11_2022/7ckr_30391.map refinement.macro_cycles=10 scattering_table=electron resolution=3.0 write_initial_geo_file=False >& 7ckr.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7ckr_30391/11_2022/7ckr_30391.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7ckr_30391/11_2022/7ckr_30391.map 3.0
Refinement ran but no refined model file.