phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7cm7_30403/05_2023/7cm7_30403_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7cm7_30403/05_2023/7cm7_30403.map refinement.macro_cycles=10 scattering_table=electron resolution=2.6 write_initial_geo_file=False >& 7cm7.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7cm7_30403/05_2023/7cm7_30403.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7cm7_30403/05_2023/7cm7_30403.map 2.6
Refinement ran but no refined model file.