phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7d65_30589/04_2022/7d65_30589_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7d65_30589/04_2022/7d65_30589.map refinement.macro_cycles=10 scattering_table=electron resolution=2.94 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7d65_30589/04_2022/7d65_30589_ligands.cif >& 7d65.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7d65_30589/04_2022/7d65_30589.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7d65_30589/04_2022/7d65_30589.map 2.94
Refinement ran but no refined model file.