phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7d77_30603/12_2021/7d77_30603_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7d77_30603/12_2021/7d77_30603.map refinement.macro_cycles=10 scattering_table=electron resolution=2.9 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7d77_30603/12_2021/7d77_30603_ligands.cif >& 7d77.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7d77_30603/12_2021/7d77_30603.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7d77_30603/12_2021/7d77_30603.map 2.9
Refinement ran but no refined model file.