Starting phenix.real_space_refine on Sat Mar 16 05:18:44 2024 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7dco_30637/03_2024/7dco_30637_neut_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7dco_30637/03_2024/7dco_30637.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=2.5 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7dco_30637/03_2024/7dco_30637.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7dco_30637/03_2024/7dco_30637.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7dco_30637/03_2024/7dco_30637_neut_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7dco_30637/03_2024/7dco_30637_neut_updated.pdb" } resolution = 2.5 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= -0.000 sd= 0.006 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 8 Type Number sf(0) Gaussians Ca 1 9.91 5 Zn 15 6.06 5 P 563 5.49 5 Mg 6 5.21 5 S 479 5.16 5 C 79049 2.51 5 N 22192 2.21 5 O 27570 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "A ARG 238": "NH1" <-> "NH2" Residue "A ARG 284": "NH1" <-> "NH2" Residue "A ARG 313": "NH1" <-> "NH2" Residue "A ARG 376": "NH1" <-> "NH2" Residue "A ARG 488": "NH1" <-> "NH2" Residue "A ARG 610": "NH1" <-> "NH2" Residue "A ARG 668": "NH1" <-> "NH2" Residue "A ARG 678": "NH1" <-> "NH2" Residue "A ARG 749": "NH1" <-> "NH2" Residue "A ARG 780": "NH1" <-> "NH2" Residue "A ARG 791": "NH1" <-> "NH2" Residue "A ARG 814": "NH1" <-> "NH2" Residue "A ARG 833": "NH1" <-> "NH2" Residue "A ARG 854": "NH1" <-> "NH2" Residue "A GLU 1051": "OE1" <-> "OE2" Residue "A GLU 1178": "OE1" <-> "OE2" Residue "A ARG 1370": "NH1" <-> "NH2" Residue "A ARG 1442": "NH1" <-> "NH2" Residue "A ARG 1490": "NH1" <-> "NH2" Residue "A ARG 1499": "NH1" <-> "NH2" Residue "A ARG 1506": "NH1" <-> "NH2" Residue "A ARG 1511": "NH1" <-> "NH2" Residue "A ARG 1605": "NH1" <-> "NH2" Residue "A TYR 1692": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "A ARG 1750": "NH1" <-> "NH2" Residue "A ARG 1803": "NH1" <-> "NH2" Residue "A ARG 2013": "NH1" <-> "NH2" Residue "A ARG 2065": "NH1" <-> "NH2" Residue "A ARG 2153": "NH1" <-> "NH2" Residue "C ARG 120": "NH1" <-> "NH2" Residue "C ARG 176": "NH1" <-> "NH2" Residue "C ARG 187": "NH1" <-> "NH2" Residue "C ARG 441": "NH1" <-> "NH2" Residue "C ARG 510": "NH1" <-> "NH2" Residue "D PHE 453": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D TYR 475": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 576": "NH1" <-> "NH2" Residue "D ARG 713": "NH1" <-> "NH2" Residue "D ARG 810": "NH1" <-> "NH2" Residue "D ARG 877": "NH1" <-> "NH2" Residue "D ARG 1119": "NH1" <-> "NH2" Residue "D ARG 1126": "NH1" <-> "NH2" Residue "D ARG 1147": "NH1" <-> "NH2" Residue "D ARG 1213": "NH1" <-> "NH2" Residue "D TYR 1254": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "D ARG 1389": "NH1" <-> "NH2" Residue "D ARG 1912": "NH1" <-> "NH2" Residue "h ARG 11": "NH1" <-> "NH2" Residue "j ARG 82": "NH1" <-> "NH2" Residue "k ARG 30": "NH1" <-> "NH2" Residue "m ARG 88": "NH1" <-> "NH2" Residue "n ARG 63": "NH1" <-> "NH2" Residue "n ARG 97": "NH1" <-> "NH2" Residue "u ARG 228": "NH1" <-> "NH2" Residue "u ARG 341": "NH1" <-> "NH2" Residue "u ARG 445": "NH1" <-> "NH2" Residue "w PHE 124": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "1 ARG 186": "NH1" <-> "NH2" Residue "1 ARG 259": "NH1" <-> "NH2" Residue "1 GLU 437": "OE1" <-> "OE2" Residue "1 ARG 476": "NH1" <-> "NH2" Residue "1 ARG 556": "NH1" <-> "NH2" Residue "1 ARG 593": "NH1" <-> "NH2" Residue "1 ARG 694": "NH1" <-> "NH2" Residue "1 ARG 744": "NH1" <-> "NH2" Residue "1 ARG 849": "NH1" <-> "NH2" Residue "1 ARG 898": "NH1" <-> "NH2" Residue "1 ARG 931": "NH1" <-> "NH2" Residue "1 ARG 936": "NH1" <-> "NH2" Residue "2 ARG 155": "NH1" <-> "NH2" Residue "2 ARG 186": "NH1" <-> "NH2" Residue "2 ARG 192": "NH1" <-> "NH2" Residue "2 ARG 209": "NH1" <-> "NH2" Residue "3 ARG 170": "NH1" <-> "NH2" Residue "3 ARG 181": "NH1" <-> "NH2" Residue "3 ARG 185": "NH1" <-> "NH2" Residue "3 ARG 186": "NH1" <-> "NH2" Residue "3 ARG 223": "NH1" <-> "NH2" Residue "3 ARG 232": "NH1" <-> "NH2" Residue "3 ARG 400": "NH1" <-> "NH2" Residue "3 ARG 608": "NH1" <-> "NH2" Residue "3 ARG 617": "NH1" <-> "NH2" Residue "3 ARG 631": "NH1" <-> "NH2" Residue "3 ARG 732": "NH1" <-> "NH2" Residue "3 ARG 767": "NH1" <-> "NH2" Residue "3 ARG 768": "NH1" <-> "NH2" Residue "3 ARG 781": "NH1" <-> "NH2" Residue "3 ARG 839": "NH1" <-> "NH2" Residue "3 ARG 870": "NH1" <-> "NH2" Residue "3 ARG 875": "NH1" <-> "NH2" Residue "3 ARG 952": "NH1" <-> "NH2" Residue "3 ARG 989": "NH1" <-> "NH2" Residue "3 ARG 1002": "NH1" <-> "NH2" Residue "3 ARG 1061": "NH1" <-> "NH2" Residue "3 ARG 1084": "NH1" <-> "NH2" Residue "3 ARG 1142": "NH1" <-> "NH2" Residue "3 TYR 1218": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "3 ARG 1302": "NH1" <-> "NH2" Residue "3 ARG 1308": "NH1" <-> "NH2" Residue "3 ARG 1315": "NH1" <-> "NH2" Residue "3 ARG 1328": "NH1" <-> "NH2" Residue "3 ARG 1357": "NH1" <-> "NH2" Residue "4 PHE 141": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "6 ARG 6": "NH1" <-> "NH2" Residue "6 ARG 36": "NH1" <-> "NH2" Residue "6 ARG 57": "NH1" <-> "NH2" Residue "L ARG 85": "NH1" <-> "NH2" Residue "N ARG 8": "NH1" <-> "NH2" Residue "N ARG 31": "NH1" <-> "NH2" Residue "N ARG 151": "NH1" <-> "NH2" Residue "T ARG 143": "NH1" <-> "NH2" Residue "T PHE 155": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "T ARG 244": "NH1" <-> "NH2" Residue "T ARG 254": "NH1" <-> "NH2" Residue "P ARG 47": "NH1" <-> "NH2" Residue "P ARG 69": "NH1" <-> "NH2" Residue "P ARG 125": "NH1" <-> "NH2" Residue "P ARG 306": "NH1" <-> "NH2" Residue "P ARG 318": "NH1" <-> "NH2" Residue "Q PHE 46": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "Q ARG 63": "NH1" <-> "NH2" Residue "Q ARG 261": "NH1" <-> "NH2" Residue "Y ARG 176": "NH1" <-> "NH2" Residue "X PHE 74": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "Z ARG 155": "NH1" <-> "NH2" Residue "Z ARG 212": "NH1" <-> "NH2" Residue "W ARG 60": "NH1" <-> "NH2" Residue "W ARG 63": "NH1" <-> "NH2" Residue "V ARG 15": "NH1" <-> "NH2" Residue "V ARG 22": "NH1" <-> "NH2" Residue "V ARG 42": "NH1" <-> "NH2" Residue "V ARG 53": "NH1" <-> "NH2" Residue "V ARG 71": "NH1" <-> "NH2" Residue "V ARG 108": "NH1" <-> "NH2" Residue "V ARG 149": "NH1" <-> "NH2" Residue "V ARG 178": "NH1" <-> "NH2" Residue "V ARG 191": "NH1" <-> "NH2" Residue "V ARG 201": "NH1" <-> "NH2" Residue "V ARG 382": "NH1" <-> "NH2" Residue "V ARG 439": "NH1" <-> "NH2" Residue "y GLU 96": "OE1" <-> "OE2" Residue "x ARG 401": "NH1" <-> "NH2" Residue "x ARG 402": "NH1" <-> "NH2" Residue "x ARG 465": "NH1" <-> "NH2" Time to flip residues: 0.24s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/chem_data/mon_lib" Total number of atoms: 129875 Number of models: 1 Model: "" Number of chains: 91 Chain: "A" Number of atoms: 18135 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2205, 18135 Classifications: {'peptide': 2205} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PCIS': 4, 'PTRANS': 107, 'TRANS': 2093} Chain breaks: 2 Unresolved non-hydrogen bonds: 3 Unresolved non-hydrogen angles: 4 Unresolved non-hydrogen dihedrals: 2 Unresolved non-hydrogen chiralities: 1 Chain: "B" Number of atoms: 3795 Number of conformers: 1 Conformer: "" Number of residues, atoms: 179, 3795 Classifications: {'RNA': 179} Modifications used: {'5*END': 1, 'rna2p_pur': 18, 'rna2p_pyr': 10, 'rna3p_pur': 70, 'rna3p_pyr': 81} Link IDs: {'rna2p': 28, 'rna3p': 150} Chain breaks: 1 Chain: "C" Number of atoms: 7328 Number of conformers: 1 Conformer: "" Number of residues, atoms: 918, 7328 Classifications: {'peptide': 918} Link IDs: {'PTRANS': 51, 'TRANS': 866} Chain breaks: 2 Chain: "D" Number of atoms: 14666 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1828, 14666 Classifications: {'peptide': 1828} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 78, 'TRANS': 1749} Chain breaks: 3 Chain: "d" Number of atoms: 316 Number of conformers: 1 Conformer: "" Number of residues, atoms: 79, 316 Classifications: {'peptide': 79} Incomplete info: {'backbone_only': 73} Link IDs: {'PTRANS': 4, 'TRANS': 74} Unresolved chain link angles: 4 Unresolved non-hydrogen bonds: 297 Unresolved non-hydrogen angles: 434 Unresolved non-hydrogen dihedrals: 175 Unresolved non-hydrogen chiralities: 102 Planarities with less than four sites: {'GLN:plan1': 5, 'ASP:plan': 4, 'TYR:plan': 1, 'ASN:plan1': 3, 'HIS:plan': 2, 'PHE:plan': 2, 'GLU:plan': 5, 'ARG:plan': 3} Unresolved non-hydrogen planarities: 117 Chain: "a" Number of atoms: 292 Number of conformers: 1 Conformer: "" Number of residues, atoms: 73, 292 Classifications: {'peptide': 73} Incomplete info: {'backbone_only': 69} Link IDs: {'PTRANS': 1, 'TRANS': 71} Chain breaks: 1 Unresolved chain link angles: 1 Unresolved non-hydrogen bonds: 302 Unresolved non-hydrogen angles: 435 Unresolved non-hydrogen dihedrals: 182 Unresolved non-hydrogen chiralities: 98 Planarities with less than four sites: {'GLN:plan1': 3, 'HIS:plan': 2, 'TYR:plan': 2, 'ASN:plan1': 3, 'ASP:plan': 4, 'PHE:plan': 1, 'GLU:plan': 6, 'ARG:plan': 6} Unresolved non-hydrogen planarities: 129 Chain: "b" Number of atoms: 308 Number of conformers: 1 Conformer: "" Number of residues, atoms: 77, 308 Classifications: {'peptide': 77} Incomplete info: {'backbone_only': 75} Link IDs: {'PTRANS': 3, 'TRANS': 73} Chain breaks: 2 Unresolved chain link angles: 3 Unresolved non-hydrogen bonds: 298 Unresolved non-hydrogen angles: 438 Unresolved non-hydrogen dihedrals: 170 Unresolved non-hydrogen chiralities: 108 Planarities with less than four sites: {'GLN:plan1': 6, 'ASN:plan1': 7, 'TRP:plan': 1, 'ASP:plan': 5, 'PHE:plan': 1, 'GLU:plan': 2, 'ARG:plan': 2} Unresolved non-hydrogen planarities: 107 Chain: "c" Number of atoms: 360 Number of conformers: 1 Conformer: "" Number of residues, atoms: 90, 360 Classifications: {'peptide': 90} Incomplete info: {'backbone_only': 88} Link IDs: {'PTRANS': 3, 'TRANS': 86} Chain breaks: 1 Unresolved chain link angles: 3 Unresolved non-hydrogen bonds: 395 Unresolved non-hydrogen angles: 563 Unresolved non-hydrogen dihedrals: 253 Unresolved non-hydrogen chiralities: 118 Planarities with less than four sites: {'HIS:plan': 3, 'ASN:plan1': 7, 'TRP:plan': 1, 'ASP:plan': 3, 'PHE:plan': 5, 'GLU:plan': 9, 'ARG:plan': 7} Unresolved non-hydrogen planarities: 174 Chain: "e" Number of atoms: 288 Number of conformers: 1 Conformer: "" Number of residues, atoms: 72, 288 Classifications: {'peptide': 72} Incomplete info: {'backbone_only': 68} Link IDs: {'PTRANS': 3, 'TRANS': 68} Chain breaks: 2 Unresolved chain link angles: 3 Unresolved non-hydrogen bonds: 298 Unresolved non-hydrogen angles: 431 Unresolved non-hydrogen dihedrals: 185 Unresolved non-hydrogen chiralities: 96 Planarities with less than four sites: {'GLN:plan1': 4, 'ASN:plan1': 4, 'TRP:plan': 1, 'ASP:plan': 4, 'PHE:plan': 5, 'GLU:plan': 6, 'ARG:plan': 1} Unresolved non-hydrogen planarities: 122 Chain: "f" Number of atoms: 280 Number of conformers: 1 Conformer: "" Number of residues, atoms: 70, 280 Classifications: {'peptide': 70} Incomplete info: {'backbone_only': 64} Link IDs: {'PTRANS': 3, 'TRANS': 66} Chain breaks: 1 Unresolved chain link angles: 3 Unresolved non-hydrogen bonds: 293 Unresolved non-hydrogen angles: 424 Unresolved non-hydrogen dihedrals: 186 Unresolved non-hydrogen chiralities: 87 Planarities with less than four sites: {'GLN:plan1': 2, 'ASP:plan': 1, 'TYR:plan': 3, 'ASN:plan1': 7, 'HIS:plan': 2, 'PHE:plan': 4, 'GLU:plan': 6, 'ARG:plan': 4} Unresolved non-hydrogen planarities: 148 Chain: "g" Number of atoms: 280 Number of conformers: 1 Conformer: "" Number of residues, atoms: 70, 280 Classifications: {'peptide': 70} Incomplete info: {'backbone_only': 65} Link IDs: {'PTRANS': 1, 'TRANS': 68} Chain breaks: 2 Unresolved chain link angles: 1 Unresolved non-hydrogen bonds: 265 Unresolved non-hydrogen angles: 384 Unresolved non-hydrogen dihedrals: 157 Unresolved non-hydrogen chiralities: 89 Planarities with less than four sites: {'GLN:plan1': 1, 'HIS:plan': 1, 'TYR:plan': 2, 'ASN:plan1': 7, 'ASP:plan': 5, 'PHE:plan': 1, 'GLU:plan': 3, 'ARG:plan': 3} Unresolved non-hydrogen planarities: 108 Chain: "F" Number of atoms: 2192 Number of conformers: 1 Conformer: "" Number of residues, atoms: 103, 2192 Classifications: {'RNA': 103} Modifications used: {'rna2p_pur': 9, 'rna2p_pyr': 11, 'rna3p_pur': 46, 'rna3p_pyr': 37} Link IDs: {'rna2p': 20, 'rna3p': 82} Chain: "G" Number of atoms: 2099 Number of conformers: 1 Conformer: "" Number of residues, atoms: 105, 2099 Inner-chain residues flagged as termini: ['pdbres=" A G 468 "'] Classifications: {'RNA': 105} Modifications used: {'5*END': 1, 'rna2p_pur': 20, 'rna2p_pyr': 15, 'rna3p_pur': 36, 'rna3p_pyr': 33} Link IDs: {'rna2p': 35, 'rna3p': 69} Chain breaks: 3 Unresolved chain link dihedrals: 1 Unresolved non-hydrogen bonds: 138 Unresolved non-hydrogen angles: 217 Unresolved non-hydrogen dihedrals: 138 Unresolved non-hydrogen chiralities: 14 Planarities with less than four sites: {' U:plan': 1, ' A%rna3p_pur:plan2': 10, ' A%rna3p_pur:plan': 10} Unresolved non-hydrogen planarities: 129 Chain: "H" Number of atoms: 3566 Number of conformers: 1 Conformer: "" Number of residues, atoms: 169, 3566 Classifications: {'RNA': 169} Modifications used: {'rna2p_pur': 6, 'rna2p_pyr': 10, 'rna3p_pur': 67, 'rna3p_pyr': 86} Link IDs: {'rna2p': 16, 'rna3p': 152} Chain breaks: 7 Chain: "o" Number of atoms: 841 Number of conformers: 1 Conformer: "" Number of residues, atoms: 135, 841 Classifications: {'peptide': 135} Incomplete info: {'truncation_to_alanine': 19} Link IDs: {'PTRANS': 6, 'TRANS': 128} Chain breaks: 4 Unresolved chain link angles: 5 Unresolved non-hydrogen bonds: 273 Unresolved non-hydrogen angles: 373 Unresolved non-hydrogen dihedrals: 203 Unresolved non-hydrogen chiralities: 36 Planarities with less than four sites: {'GLN:plan1': 6, 'ARG:plan': 9, 'TYR:plan': 2, 'ASN:plan1': 7, 'HIS:plan': 6, 'PHE:plan': 2, 'GLU:plan': 7, 'ASP:plan': 8} Unresolved non-hydrogen planarities: 167 Chain: "p" Number of atoms: 476 Number of conformers: 1 Conformer: "" Number of residues, atoms: 75, 476 Classifications: {'peptide': 75} Incomplete info: {'truncation_to_alanine': 10} Link IDs: {'PTRANS': 1, 'TRANS': 73} Unresolved chain link angles: 1 Unresolved non-hydrogen bonds: 144 Unresolved non-hydrogen angles: 190 Unresolved non-hydrogen dihedrals: 113 Unresolved non-hydrogen chiralities: 15 Planarities with less than four sites: {'GLN:plan1': 5, 'ASN:plan1': 4, 'ASP:plan': 1, 'PHE:plan': 6, 'GLU:plan': 4, 'ARG:plan': 4} Unresolved non-hydrogen planarities: 90 Chain: "h" Number of atoms: 610 Number of conformers: 1 Conformer: "" Number of residues, atoms: 78, 610 Classifications: {'peptide': 78} Incomplete info: {'truncation_to_alanine': 4} Link IDs: {'PTRANS': 2, 'TRANS': 75} Chain breaks: 1 Unresolved non-hydrogen bonds: 15 Unresolved non-hydrogen angles: 17 Unresolved non-hydrogen dihedrals: 13 Planarities with less than four sites: {'GLU:plan': 1, 'ASP:plan': 1} Unresolved non-hydrogen planarities: 7 Chain: "i" Number of atoms: 575 Number of conformers: 1 Conformer: "" Number of residues, atoms: 75, 575 Classifications: {'peptide': 75} Incomplete info: {'truncation_to_alanine': 3} Link IDs: {'PTRANS': 5, 'TRANS': 69} Chain breaks: 1 Unresolved non-hydrogen bonds: 12 Unresolved non-hydrogen angles: 14 Unresolved non-hydrogen dihedrals: 10 Planarities with less than four sites: {'GLU:plan': 2} Unresolved non-hydrogen planarities: 8 Chain: "j" Number of atoms: 554 Number of conformers: 1 Conformer: "" Number of residues, atoms: 70, 554 Classifications: {'peptide': 70} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PTRANS': 2, 'TRANS': 67} Chain breaks: 1 Unresolved non-hydrogen bonds: 4 Unresolved non-hydrogen angles: 5 Unresolved non-hydrogen dihedrals: 3 Planarities with less than four sites: {'GLU:plan': 1} Unresolved non-hydrogen planarities: 4 Chain: "k" Number of atoms: 529 Number of conformers: 1 Conformer: "" Number of residues, atoms: 69, 529 Classifications: {'peptide': 69} Incomplete info: {'truncation_to_alanine': 2} Link IDs: {'PTRANS': 1, 'TRANS': 67} Chain breaks: 1 Unresolved non-hydrogen bonds: 7 Unresolved non-hydrogen angles: 9 Unresolved non-hydrogen dihedrals: 5 Planarities with less than four sites: {'GLU:plan': 1, 'ASP:plan': 1} Unresolved non-hydrogen planarities: 7 Chain: "l" Number of atoms: 611 Number of conformers: 1 Conformer: "" Number of residues, atoms: 81, 611 Classifications: {'peptide': 81} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 2} Link IDs: {'PCIS': 1, 'PTRANS': 3, 'TRANS': 76} Unresolved non-hydrogen bonds: 12 Unresolved non-hydrogen angles: 16 Unresolved non-hydrogen dihedrals: 8 Unresolved non-hydrogen chiralities: 1 Planarities with less than four sites: {'GLN:plan1': 1, 'GLU:plan': 1, 'ASP:plan': 1} Unresolved non-hydrogen planarities: 11 Chain: "m" Number of atoms: 644 Number of conformers: 1 Conformer: "" Number of residues, atoms: 82, 644 Classifications: {'peptide': 82} Link IDs: {'PTRANS': 3, 'TRANS': 78} Chain breaks: 1 Chain: "n" Number of atoms: 528 Number of conformers: 1 Conformer: "" Number of residues, atoms: 65, 528 Classifications: {'peptide': 65} Incomplete info: {'truncation_to_alanine': 2} Link IDs: {'PTRANS': 1, 'TRANS': 63} Unresolved non-hydrogen bonds: 8 Unresolved non-hydrogen angles: 10 Unresolved non-hydrogen dihedrals: 6 Planarities with less than four sites: {'GLU:plan': 2} Unresolved non-hydrogen planarities: 8 Chain: "u" Number of atoms: 3899 Number of conformers: 1 Conformer: "" Number of residues, atoms: 461, 3899 Classifications: {'peptide': 461} Incomplete info: {'truncation_to_alanine': 5} Link IDs: {'PTRANS': 10, 'TRANS': 450} Chain breaks: 3 Unresolved non-hydrogen bonds: 17 Unresolved non-hydrogen angles: 20 Unresolved non-hydrogen dihedrals: 14 Unresolved non-hydrogen chiralities: 1 Planarities with less than four sites: {'GLU:plan': 1, 'ASP:plan': 1} Unresolved non-hydrogen planarities: 7 Chain: "w" Number of atoms: 1084 Number of conformers: 1 Conformer: "" Number of residues, atoms: 127, 1084 Classifications: {'peptide': 127} Link IDs: {'PTRANS': 2, 'TRANS': 124} Chain breaks: 1 Chain: "v" Number of atoms: 1621 Number of conformers: 1 Conformer: "" Number of residues, atoms: 207, 1621 Classifications: {'peptide': 207} Incomplete info: {'truncation_to_alanine': 2} Link IDs: {'PTRANS': 7, 'TRANS': 199} Chain breaks: 2 Unresolved non-hydrogen bonds: 7 Unresolved non-hydrogen angles: 8 Unresolved non-hydrogen dihedrals: 6 Unresolved non-hydrogen chiralities: 1 Chain: "1" Number of atoms: 7376 Number of conformers: 1 Conformer: "" Number of residues, atoms: 930, 7376 Classifications: {'peptide': 930} Incomplete info: {'truncation_to_alanine': 11} Link IDs: {'PCIS': 2, 'PTRANS': 45, 'TRANS': 882} Chain breaks: 1 Unresolved chain link angles: 1 Unresolved non-hydrogen bonds: 34 Unresolved non-hydrogen angles: 42 Unresolved non-hydrogen dihedrals: 27 Unresolved non-hydrogen chiralities: 4 Planarities with less than four sites: {'GLU:plan': 2, 'ASP:plan': 1} Unresolved non-hydrogen planarities: 11 Chain: "2" Number of atoms: 1793 Number of conformers: 1 Conformer: "" Number of residues, atoms: 220, 1793 Classifications: {'peptide': 220} Link IDs: {'PTRANS': 18, 'TRANS': 201} Chain breaks: 2 Chain: "3" Number of atoms: 9599 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1207, 9599 Classifications: {'peptide': 1207} Link IDs: {'PCIS': 2, 'PTRANS': 43, 'TRANS': 1161} Chain breaks: 6 Chain: "4" Number of atoms: 1433 Number of conformers: 1 Conformer: "" Number of residues, atoms: 174, 1433 Classifications: {'peptide': 174} Link IDs: {'PTRANS': 5, 'TRANS': 168} Chain breaks: 3 Chain: "5" Number of atoms: 814 Number of conformers: 1 Conformer: "" Number of residues, atoms: 103, 814 Classifications: {'peptide': 103} Link IDs: {'PTRANS': 4, 'TRANS': 98} Chain: "6" Number of atoms: 693 Number of conformers: 1 Conformer: "" Number of residues, atoms: 84, 693 Classifications: {'peptide': 84} Link IDs: {'PTRANS': 1, 'TRANS': 82} Chain: "L" Number of atoms: 2901 Number of conformers: 1 Conformer: "" Number of residues, atoms: 435, 2901 Classifications: {'peptide': 435} Incomplete info: {'truncation_to_alanine': 139} Link IDs: {'PTRANS': 22, 'TRANS': 412} Chain breaks: 3 Unresolved chain link angles: 16 Unresolved non-hydrogen bonds: 701 Unresolved non-hydrogen angles: 901 Unresolved non-hydrogen dihedrals: 566 Unresolved non-hydrogen chiralities: 52 Planarities with less than four sites: {'GLN:plan1': 17, 'HIS:plan': 5, 'TYR:plan': 8, 'ASN:plan1': 16, 'ASP:plan': 9, 'PHE:plan': 7, 'GLU:plan': 28, 'ARG:plan': 14} Unresolved non-hydrogen planarities: 421 Chain: "s" Number of atoms: 819 Number of conformers: 1 Conformer: "" Number of residues, atoms: 124, 819 Classifications: {'peptide': 124} Incomplete info: {'truncation_to_alanine': 8} Link IDs: {'PTRANS': 7, 'TRANS': 116} Chain breaks: 2 Unresolved chain link angles: 3 Unresolved non-hydrogen bonds: 159 Unresolved non-hydrogen angles: 211 Unresolved non-hydrogen dihedrals: 115 Unresolved non-hydrogen chiralities: 23 Planarities with less than four sites: {'GLN:plan1': 3, 'TYR:plan': 1, 'ASN:plan1': 6, 'ASP:plan': 4, 'PHE:plan': 1, 'GLU:plan': 4, 'ARG:plan': 4} Unresolved non-hydrogen planarities: 75 Chain: "t" Number of atoms: 843 Number of conformers: 1 Conformer: "" Number of residues, atoms: 128, 843 Classifications: {'peptide': 128} Incomplete info: {'truncation_to_alanine': 8} Link IDs: {'PTRANS': 7, 'TRANS': 120} Chain breaks: 2 Unresolved chain link angles: 3 Unresolved non-hydrogen bonds: 167 Unresolved non-hydrogen angles: 222 Unresolved non-hydrogen dihedrals: 120 Unresolved non-hydrogen chiralities: 24 Planarities with less than four sites: {'GLN:plan1': 4, 'TYR:plan': 1, 'ASN:plan1': 6, 'ASP:plan': 4, 'PHE:plan': 1, 'GLU:plan': 5, 'ARG:plan': 4} Unresolved non-hydrogen planarities: 81 Chain: "q" Number of atoms: 850 Number of conformers: 1 Conformer: "" Number of residues, atoms: 129, 850 Classifications: {'peptide': 129} Incomplete info: {'truncation_to_alanine': 7} Link IDs: {'PTRANS': 8, 'TRANS': 120} Chain breaks: 1 Unresolved chain link angles: 4 Unresolved non-hydrogen bonds: 166 Unresolved non-hydrogen angles: 221 Unresolved non-hydrogen dihedrals: 120 Unresolved non-hydrogen chiralities: 23 Planarities with less than four sites: {'GLN:plan1': 5, 'TYR:plan': 1, 'ASN:plan1': 6, 'ASP:plan': 4, 'PHE:plan': 1, 'GLU:plan': 4, 'ARG:plan': 4} Unresolved non-hydrogen planarities: 81 Chain: "r" Number of atoms: 823 Number of conformers: 1 Conformer: "" Number of residues, atoms: 125, 823 Classifications: {'peptide': 125} Incomplete info: {'truncation_to_alanine': 10} Link IDs: {'PTRANS': 7, 'TRANS': 117} Chain breaks: 2 Unresolved chain link angles: 3 Unresolved non-hydrogen bonds: 166 Unresolved non-hydrogen angles: 220 Unresolved non-hydrogen dihedrals: 121 Unresolved non-hydrogen chiralities: 24 Planarities with less than four sites: {'GLN:plan1': 3, 'TYR:plan': 1, 'ASN:plan1': 6, 'ASP:plan': 4, 'PHE:plan': 1, 'GLU:plan': 5, 'ARG:plan': 4} Unresolved non-hydrogen planarities: 80 Chain: "K" Number of atoms: 920 Number of conformers: 1 Conformer: "" Number of residues, atoms: 155, 920 Classifications: {'peptide': 155} Incomplete info: {'truncation_to_alanine': 40} Link IDs: {'PTRANS': 5, 'TRANS': 149} Chain breaks: 2 Unresolved chain link angles: 5 Unresolved non-hydrogen bonds: 400 Unresolved non-hydrogen angles: 535 Unresolved non-hydrogen dihedrals: 313 Unresolved non-hydrogen chiralities: 37 Planarities with less than four sites: {'GLN:plan1': 7, 'HIS:plan': 1, 'TYR:plan': 8, 'ASN:plan1': 12, 'TRP:plan': 1, 'ASP:plan': 14, 'PHE:plan': 4, 'GLU:plan': 9, 'ARG:plan': 12} Unresolved non-hydrogen planarities: 258 Chain: "N" Number of atoms: 1291 Number of conformers: 1 Conformer: "" Number of residues, atoms: 157, 1291 Classifications: {'peptide': 157} Modifications used: {'COO': 1} Link IDs: {'PTRANS': 5, 'TRANS': 151} Chain: "T" Number of atoms: 2646 Number of conformers: 1 Conformer: "" Number of residues, atoms: 337, 2646 Classifications: {'peptide': 337} Link IDs: {'PCIS': 1, 'PTRANS': 11, 'TRANS': 324} Chain: "P" Number of atoms: 1978 Number of conformers: 1 Conformer: "" Number of residues, atoms: 246, 1978 Classifications: {'peptide': 246} Link IDs: {'PTRANS': 13, 'TRANS': 232} Chain breaks: 4 Chain: "Q" Number of atoms: 2301 Number of conformers: 1 Conformer: "" Number of residues, atoms: 292, 2301 Classifications: {'peptide': 292} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PTRANS': 12, 'TRANS': 279} Chain breaks: 1 Unresolved non-hydrogen bonds: 4 Unresolved non-hydrogen angles: 4 Unresolved non-hydrogen dihedrals: 4 Chain: "R" Number of atoms: 2089 Number of conformers: 1 Conformer: "" Number of residues, atoms: 261, 2089 Classifications: {'peptide': 261} Link IDs: {'PTRANS': 10, 'TRANS': 250} Chain: "S" Number of atoms: 578 Number of conformers: 1 Conformer: "" Number of residues, atoms: 71, 578 Classifications: {'peptide': 71} Link IDs: {'PTRANS': 3, 'TRANS': 67} Chain breaks: 2 Unresolved non-hydrogen bonds: 2 Unresolved non-hydrogen angles: 4 Unresolved non-hydrogen chiralities: 2 Chain: "Y" Number of atoms: 1386 Number of conformers: 1 Conformer: "" Number of residues, atoms: 174, 1386 Classifications: {'peptide': 174} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PTRANS': 7, 'TRANS': 166} Chain breaks: 1 Unresolved non-hydrogen bonds: 6 Unresolved non-hydrogen angles: 8 Unresolved non-hydrogen dihedrals: 6 Planarities with less than four sites: {'HIS:plan': 1} Unresolved non-hydrogen planarities: 5 Chain: "X" Number of atoms: 1051 Number of conformers: 1 Conformer: "" Number of residues, atoms: 128, 1051 Classifications: {'peptide': 128} Link IDs: {'PTRANS': 3, 'TRANS': 124} Chain: "Z" Number of atoms: 920 Number of conformers: 1 Conformer: "" Number of residues, atoms: 121, 920 Classifications: {'peptide': 121} Incomplete info: {'truncation_to_alanine': 19} Link IDs: {'PTRANS': 4, 'TRANS': 116} Unresolved non-hydrogen bonds: 69 Unresolved non-hydrogen angles: 85 Unresolved non-hydrogen dihedrals: 57 Unresolved non-hydrogen chiralities: 4 Planarities with less than four sites: {'GLN:plan1': 1, 'ASP:plan': 3, 'ASN:plan1': 2, 'HIS:plan': 2, 'GLU:plan': 1, 'ARG:plan': 1} Unresolved non-hydrogen planarities: 38 Chain: "W" Number of atoms: 195 Number of conformers: 1 Conformer: "" Number of residues, atoms: 23, 195 Classifications: {'peptide': 23} Link IDs: {'PTRANS': 1, 'TRANS': 21} Chain: "U" Number of atoms: 190 Number of conformers: 1 Conformer: "" Number of residues, atoms: 27, 190 Classifications: {'peptide': 27} Link IDs: {'TRANS': 26} Chain: "V" Number of atoms: 3660 Number of conformers: 1 Conformer: "" Number of residues, atoms: 450, 3660 Classifications: {'peptide': 450} Incomplete info: {'truncation_to_alanine': 4} Link IDs: {'PTRANS': 7, 'TRANS': 442} Chain breaks: 1 Unresolved non-hydrogen bonds: 15 Unresolved non-hydrogen angles: 19 Unresolved non-hydrogen dihedrals: 13 Unresolved non-hydrogen chiralities: 1 Planarities with less than four sites: {'PHE:plan': 1, 'GLN:plan1': 1} Unresolved non-hydrogen planarities: 10 Chain: "M" Number of atoms: 1360 Number of conformers: 1 Conformer: "" Number of residues, atoms: 176, 1360 Classifications: {'peptide': 176} Incomplete info: {'backbone_only': 1, 'truncation_to_alanine': 16} Link IDs: {'PTRANS': 5, 'TRANS': 170} Chain breaks: 1 Unresolved non-hydrogen bonds: 63 Unresolved non-hydrogen angles: 73 Unresolved non-hydrogen dihedrals: 53 Unresolved non-hydrogen chiralities: 2 Planarities with less than four sites: {'GLU:plan': 1, 'ARG:plan': 3, 'ASN:plan1': 2, 'ASP:plan': 2} Unresolved non-hydrogen planarities: 31 Chain: "z" Number of atoms: 1224 Number of conformers: 1 Conformer: "" Number of residues, atoms: 150, 1224 Classifications: {'peptide': 150} Link IDs: {'PTRANS': 6, 'TRANS': 143} Chain breaks: 1 Chain: "y" Number of atoms: 572 Number of conformers: 1 Conformer: "" Number of residues, atoms: 73, 572 Classifications: {'peptide': 73} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PTRANS': 3, 'TRANS': 69} Chain breaks: 4 Unresolved non-hydrogen bonds: 4 Unresolved non-hydrogen angles: 4 Unresolved non-hydrogen dihedrals: 4 Chain: "J" Number of atoms: 3595 Number of conformers: 1 Conformer: "" Number of residues, atoms: 554, 3595 Classifications: {'peptide': 554} Incomplete info: {'backbone_only': 10, 'truncation_to_alanine': 287} Link IDs: {'PTRANS': 13, 'TRANS': 540} Chain breaks: 12 Unresolved chain link angles: 8 Unresolved non-hydrogen bonds: 1220 Unresolved non-hydrogen angles: 1566 Unresolved non-hydrogen dihedrals: 1043 Unresolved non-hydrogen chiralities: 94 Planarities with less than four sites: {'GLN:plan1': 15, 'HIS:plan': 3, 'TYR:plan': 21, 'ASN:plan1': 8, 'TRP:plan': 8, 'ASP:plan': 21, 'PHE:plan': 18, 'GLU:plan': 38, 'ARG:plan': 17} Unresolved non-hydrogen planarities: 729 Chain: "I" Number of atoms: 3101 Number of conformers: 1 Conformer: "" Number of residues, atoms: 580, 3101 Classifications: {'peptide': 580} Incomplete info: {'backbone_only': 16, 'truncation_to_alanine': 407} Link IDs: {'PTRANS': 20, 'TRANS': 559} Chain breaks: 17 Unresolved chain link angles: 19 Unresolved non-hydrogen bonds: 1804 Unresolved non-hydrogen angles: 2332 Unresolved non-hydrogen dihedrals: 1524 Unresolved non-hydrogen chiralities: 155 Planarities with less than four sites: {'GLN:plan1': 22, 'ASP:plan': 28, 'TYR:plan': 28, 'ASN:plan1': 24, 'TRP:plan': 11, 'HIS:plan': 9, 'PHE:plan': 24, 'GLU:plan': 50, 'ARG:plan': 25} Unresolved non-hydrogen planarities: 1033 Chain: "x" Number of atoms: 5193 Number of conformers: 1 Conformer: "" Number of residues, atoms: 653, 5193 Classifications: {'peptide': 653} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PCIS': 1, 'PTRANS': 32, 'TRANS': 619} Unresolved non-hydrogen bonds: 4 Unresolved non-hydrogen angles: 4 Unresolved non-hydrogen dihedrals: 4 Chain: "A" Number of atoms: 36 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 36 Unusual residues: {'IHP': 1} Classifications: {'undetermined': 1} Chain: "C" Number of atoms: 34 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3, 34 Unusual residues: {' CA': 1, ' MG': 1, 'GTP': 1} Classifications: {'undetermined': 3} Link IDs: {None: 2} Chain: "F" Number of atoms: 4 Number of conformers: 1 Conformer: "" Number of residues, atoms: 4, 4 Unusual residues: {' MG': 4} Classifications: {'undetermined': 4} Link IDs: {None: 3} Chain: "u" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' ZN': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "v" Number of atoms: 1 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 1 Unusual residues: {' ZN': 1} Classifications: {'undetermined': 1} Chain: "3" Number of atoms: 1 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 1 Unusual residues: {' MG': 1} Classifications: {'undetermined': 1} Chain: "5" Number of atoms: 3 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3, 3 Unusual residues: {' ZN': 3} Classifications: {'undetermined': 3} Link IDs: {None: 2} Chain: "N" Number of atoms: 3 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3, 3 Unusual residues: {' ZN': 3} Classifications: {'undetermined': 3} Link IDs: {None: 2} Chain: "Q" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Unusual residues: {' ZN': 2} Classifications: {'undetermined': 2} Link IDs: {None: 1} Chain: "R" Number of atoms: 1 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 1 Unusual residues: {' ZN': 1} Classifications: {'undetermined': 1} Chain: "M" Number of atoms: 3 Number of conformers: 1 Conformer: "" Number of residues, atoms: 3, 3 Unusual residues: {' ZN': 3} Classifications: {'undetermined': 3} Link IDs: {None: 2} Chain: "A" Number of atoms: 582 Number of conformers: 1 Conformer: "" Number of residues, atoms: 582, 582 Classifications: {'water': 582} Link IDs: {None: 581} Chain: "B" Number of atoms: 127 Number of conformers: 1 Conformer: "" Number of residues, atoms: 127, 127 Classifications: {'water': 127} Link IDs: {None: 126} Chain: "C" Number of atoms: 8 Number of conformers: 1 Conformer: "" Number of residues, atoms: 8, 8 Classifications: {'water': 8} Link IDs: {None: 7} Chain: "D" Number of atoms: 2 Number of conformers: 1 Conformer: "" Number of residues, atoms: 2, 2 Classifications: {'water': 2} Link IDs: {None: 1} Chain: "F" Number of atoms: 109 Number of conformers: 1 Conformer: "" Number of residues, atoms: 109, 109 Classifications: {'water': 109} Link IDs: {None: 108} Chain: "G" Number of atoms: 56 Number of conformers: 1 Conformer: "" Number of residues, atoms: 56, 56 Classifications: {'water': 56} Link IDs: {None: 55} Chain: "H" Number of atoms: 70 Number of conformers: 1 Conformer: "" Number of residues, atoms: 70, 70 Classifications: {'water': 70} Link IDs: {None: 69} Chain: "v" Number of atoms: 29 Number of conformers: 1 Conformer: "" Number of residues, atoms: 29, 29 Classifications: {'water': 29} Link IDs: {None: 28} Chain: "1" Number of atoms: 185 Number of conformers: 1 Conformer: "" Number of residues, atoms: 185, 185 Classifications: {'water': 185} Link IDs: {None: 184} Chain: "2" Number of atoms: 51 Number of conformers: 1 Conformer: "" Number of residues, atoms: 51, 51 Classifications: {'water': 51} Link IDs: {None: 50} Chain: "3" Number of atoms: 218 Number of conformers: 1 Conformer: "" Number of residues, atoms: 218, 218 Classifications: {'water': 218} Link IDs: {None: 217} Chain: "5" Number of atoms: 53 Number of conformers: 1 Conformer: "" Number of residues, atoms: 53, 53 Classifications: {'water': 53} Link IDs: {None: 52} Chain: "6" Number of atoms: 42 Number of conformers: 1 Conformer: "" Number of residues, atoms: 42, 42 Classifications: {'water': 42} Link IDs: {None: 41} Chain: "L" Number of atoms: 18 Number of conformers: 1 Conformer: "" Number of residues, atoms: 18, 18 Classifications: {'water': 18} Link IDs: {None: 17} Chain: "N" Number of atoms: 12 Number of conformers: 1 Conformer: "" Number of residues, atoms: 12, 12 Classifications: {'water': 12} Link IDs: {None: 11} Chain: "T" Number of atoms: 39 Number of conformers: 1 Conformer: "" Number of residues, atoms: 39, 39 Classifications: {'water': 39} Link IDs: {None: 38} Chain: "P" Number of atoms: 26 Number of conformers: 1 Conformer: "" Number of residues, atoms: 26, 26 Classifications: {'water': 26} Link IDs: {None: 25} Chain: "R" Number of atoms: 8 Number of conformers: 1 Conformer: "" Number of residues, atoms: 8, 8 Classifications: {'water': 8} Link IDs: {None: 7} Chain: "S" Number of atoms: 9 Number of conformers: 1 Conformer: "" Number of residues, atoms: 9, 9 Classifications: {'water': 9} Link IDs: {None: 8} Chain: "X" Number of atoms: 13 Number of conformers: 1 Conformer: "" Number of residues, atoms: 13, 13 Classifications: {'water': 13} Link IDs: {None: 12} Chain: "Z" Number of atoms: 9 Number of conformers: 1 Conformer: "" Number of residues, atoms: 9, 9 Classifications: {'water': 9} Link IDs: {None: 8} Chain: "U" Number of atoms: 6 Number of conformers: 1 Conformer: "" Number of residues, atoms: 6, 6 Classifications: {'water': 6} Link IDs: {None: 5} Chain: "V" Number of atoms: 21 Number of conformers: 1 Conformer: "" Number of residues, atoms: 21, 21 Classifications: {'water': 21} Link IDs: {None: 20} Chain: "M" Number of atoms: 21 Number of conformers: 1 Conformer: "" Number of residues, atoms: 21, 21 Classifications: {'water': 21} Link IDs: {None: 20} List of CYS excluded from plausible disulfide bonds: (reason: may participate in coordination) ATOM 62491 SG CYS u 423 163.784 86.092 212.065 1.00 19.10 S ATOM 62514 SG CYS u 426 162.014 83.216 210.385 1.00 20.85 S ATOM 61529 SG CYS u 282 242.918 21.744 227.202 1.00 25.31 S ATOM 61553 SG CYS u 285 244.816 20.845 230.124 1.00 27.06 S ATOM 64766 SG CYS v 68 165.485 112.004 181.049 1.00 0.64 S ATOM 64789 SG CYS v 71 168.025 110.067 183.301 1.00 2.92 S ATOM 86163 SG CYS 5 11 159.157 147.527 223.595 1.00 14.23 S ATOM 86432 SG CYS 5 46 157.505 150.213 225.669 1.00 2.49 S ATOM 86455 SG CYS 5 49 159.037 151.196 222.554 1.00 2.85 S ATOM 86738 SG CYS 5 86 155.952 149.124 222.362 1.00 0.12 S ATOM 86249 SG CYS 5 23 155.987 156.699 207.602 1.00 3.70 S ATOM 86273 SG CYS 5 26 155.959 153.041 207.347 1.00 4.64 S ATOM 86522 SG CYS 5 58 155.929 154.603 210.746 1.00 2.08 S ATOM 86544 SG CYS 5 61 159.046 154.886 208.735 1.00 3.88 S ATOM 86300 SG CYS 5 30 148.312 144.244 211.501 1.00 14.23 S ATOM 86321 SG CYS 5 33 148.626 141.626 208.845 1.00 2.57 S ATOM 86636 SG CYS 5 73 145.292 142.281 210.049 1.00 14.23 S ATOM 86665 SG CYS 5 76 147.820 140.637 212.313 1.00 2.97 S ATOM 95629 SG CYS N 104 106.497 174.904 105.836 1.00 3.85 S ATOM 95635 SG CYS N 105 110.093 175.943 107.125 1.00 4.46 S ATOM 95660 SG CYS N 108 109.324 172.470 106.410 1.00 3.64 S ATOM 95974 SG CYS N 148 107.796 174.827 109.229 1.00 4.59 S ATOM 95629 SG CYS N 104 106.497 174.904 105.836 1.00 3.85 S ATOM 95763 SG CYS N 122 106.159 171.140 104.817 1.00 6.71 S ATOM 95984 SG CYS N 150 103.071 173.061 106.005 1.00 4.46 S ATOM 96005 SG CYS N 153 104.809 173.985 102.967 1.00 6.88 S ATOM 95660 SG CYS N 108 109.324 172.470 106.410 1.00 3.64 S ATOM 95749 SG CYS N 120 108.801 168.628 105.721 1.00 4.49 S ATOM 95763 SG CYS N 122 106.159 171.140 104.817 1.00 6.71 S ATOM 95951 SG CYS N 145 107.288 170.534 108.418 1.00 4.18 S ATOM A00KL SG CYS Q 13 113.369 136.862 108.599 1.00 21.37 S ATOM A00L9 SG CYS Q 16 112.686 139.990 110.583 1.00 20.25 S ATOM A00XB SG CYS Q 71 115.915 138.049 111.123 1.00 18.19 S ATOM A00XW SG CYS Q 74 112.271 136.973 112.131 1.00 19.67 S ATOM A00OZ SG CYS Q 34 125.096 139.929 120.096 1.00 15.61 S ATOM A00PM SG CYS Q 37 128.647 139.934 120.941 1.00 16.70 S ATOM A00V5 SG CYS Q 61 127.633 139.478 117.337 1.00 12.20 S ATOM A00VT SG CYS Q 64 127.053 136.705 119.658 1.00 15.89 S ATOM A02QB SG CYS R 73 99.812 155.492 125.967 1.00 12.42 S ATOM A02S1 SG CYS R 81 98.384 158.876 126.396 1.00 13.69 S ATOM A02T5 SG CYS R 87 99.393 157.655 122.907 1.00 15.72 S ATOM A0AGD SG CYS M 144 147.393 163.137 164.270 1.00 14.23 S ATOM A0AIH SG CYS M 153 150.664 161.651 165.031 1.00 3.34 S ATOM A0AJL SG CYS M 159 150.555 165.173 163.228 1.00 14.23 S ATOM A0AQP SG CYS M 199 87.651 146.376 188.136 1.00 25.34 S ATOM A0ARA SG CYS M 202 84.964 143.677 188.795 1.00 26.30 S ATOM A0AV4 SG CYS M 219 85.617 146.673 191.093 1.00 24.84 S ATOM A0AVK SG CYS M 222 87.922 143.713 190.870 1.00 25.58 S ATOM A0ATX SG CYS M 214 102.227 146.245 197.039 1.00 21.03 S ATOM A0AXX SG CYS M 233 101.224 142.845 195.971 1.00 25.02 S ATOM A0AYM SG CYS M 236 103.911 145.002 193.928 1.00 24.90 S Time building chain proxies: 47.23, per 1000 atoms: 0.36 Number of scatterers: 129875 At special positions: 0 Unit cell: (276.66, 297.86, 325.42, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 8 Type Number sf(0) Zn 15 29.99 Ca 1 19.99 S 479 16.00 P 563 15.00 Mg 6 11.99 O 27570 8.00 N 22192 7.00 C 79049 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=0, symmetry=0 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=0, symmetry=0 Time building additional restraints: 35.78 Conformation dependent library (CDL) restraints added in 15.1 seconds Dynamic metal coordination Zn2+ tetrahedral coordination pdb=" ZN 5 201 " pdb="ZN ZN 5 201 " - pdb=" SG CYS 5 46 " pdb="ZN ZN 5 201 " - pdb=" SG CYS 5 49 " pdb="ZN ZN 5 201 " - pdb=" SG CYS 5 11 " pdb="ZN ZN 5 201 " - pdb=" SG CYS 5 86 " pdb=" ZN 5 202 " pdb="ZN ZN 5 202 " - pdb=" SG CYS 5 61 " pdb="ZN ZN 5 202 " - pdb=" SG CYS 5 23 " pdb="ZN ZN 5 202 " - pdb=" SG CYS 5 26 " pdb="ZN ZN 5 202 " - pdb=" SG CYS 5 58 " pdb=" ZN 5 203 " pdb="ZN ZN 5 203 " - pdb=" SG CYS 5 76 " pdb="ZN ZN 5 203 " - pdb=" SG CYS 5 33 " pdb="ZN ZN 5 203 " - pdb=" SG CYS 5 73 " pdb="ZN ZN 5 203 " - pdb=" SG CYS 5 30 " pdb=" ZN M 500 " pdb="ZN ZN M 500 " - pdb=" NE2 HIS M 163 " pdb="ZN ZN M 500 " - pdb=" SG CYS M 144 " pdb="ZN ZN M 500 " - pdb=" SG CYS M 153 " pdb="ZN ZN M 500 " - pdb=" SG CYS M 159 " pdb=" ZN M 501 " pdb="ZN ZN M 501 " - pdb=" SG CYS M 219 " pdb="ZN ZN M 501 " - pdb=" SG CYS M 222 " pdb="ZN ZN M 501 " - pdb=" SG CYS M 199 " pdb="ZN ZN M 501 " - pdb=" SG CYS M 202 " pdb=" ZN M 502 " pdb="ZN ZN M 502 " - pdb=" NE2 HIS M 216 " pdb="ZN ZN M 502 " - pdb=" SG CYS M 236 " pdb="ZN ZN M 502 " - pdb=" SG CYS M 214 " pdb="ZN ZN M 502 " - pdb=" SG CYS M 233 " pdb=" ZN N1000 " pdb="ZN ZN N1000 " - pdb=" SG CYS N 105 " pdb="ZN ZN N1000 " - pdb=" SG CYS N 108 " pdb="ZN ZN N1000 " - pdb=" SG CYS N 148 " pdb="ZN ZN N1000 " - pdb=" SG CYS N 104 " pdb=" ZN N1001 " pdb="ZN ZN N1001 " - pdb=" SG CYS N 153 " pdb="ZN ZN N1001 " - pdb=" SG CYS N 104 " pdb="ZN ZN N1001 " - pdb=" SG CYS N 150 " pdb="ZN ZN N1001 " - pdb=" SG CYS N 122 " pdb=" ZN N1002 " pdb="ZN ZN N1002 " - pdb=" SG CYS N 145 " pdb="ZN ZN N1002 " - pdb=" SG CYS N 122 " pdb="ZN ZN N1002 " - pdb=" SG CYS N 120 " pdb="ZN ZN N1002 " - pdb=" SG CYS N 108 " pdb=" ZN Q 400 " pdb="ZN ZN Q 400 " - pdb=" SG CYS Q 16 " pdb="ZN ZN Q 400 " - pdb=" SG CYS Q 74 " pdb="ZN ZN Q 400 " - pdb=" SG CYS Q 13 " pdb="ZN ZN Q 400 " - pdb=" SG CYS Q 71 " pdb=" ZN Q 401 " pdb="ZN ZN Q 401 " - pdb=" SG CYS Q 37 " pdb="ZN ZN Q 401 " - pdb=" SG CYS Q 64 " pdb="ZN ZN Q 401 " - pdb=" SG CYS Q 34 " pdb="ZN ZN Q 401 " - pdb=" SG CYS Q 61 " pdb=" ZN R 400 " pdb="ZN ZN R 400 " - pdb=" SG CYS R 81 " pdb="ZN ZN R 400 " - pdb=" SG CYS R 73 " pdb="ZN ZN R 400 " - pdb=" NE2 HIS R 91 " pdb="ZN ZN R 400 " - pdb=" SG CYS R 87 " pdb=" ZN u1001 " pdb="ZN ZN u1001 " - pdb=" NE2 HIS u 440 " pdb="ZN ZN u1001 " - pdb=" SG CYS u 423 " pdb="ZN ZN u1001 " - pdb=" SG CYS u 426 " pdb="ZN ZN u1001 " - pdb=" NE2 HIS u 446 " pdb=" ZN u1002 " pdb="ZN ZN u1002 " - pdb=" NE2 HIS u 298 " pdb="ZN ZN u1002 " - pdb=" SG CYS u 282 " pdb="ZN ZN u1002 " - pdb=" SG CYS u 285 " pdb="ZN ZN u1002 " - pdb=" NE2 HIS u 304 " pdb=" ZN v 600 " pdb="ZN ZN v 600 " - pdb=" NE2 HIS v 84 " pdb="ZN ZN v 600 " - pdb=" SG CYS v 71 " pdb="ZN ZN v 600 " - pdb=" ND1 HIS v 90 " pdb="ZN ZN v 600 " - pdb=" SG CYS v 68 " Number of angles added : 68 29984 Ramachandran restraints generated. 14992 Oldfield, 0 Emsley, 14992 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 28166 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 578 helices and 130 sheets defined 51.9% alpha, 14.1% beta 107 base pairs and 268 stacking pairs defined. Time for finding SS restraints: 90.83 Creating SS restraints... Processing helix chain 'A' and resid 135 through 147 removed outlier: 4.049A pdb=" N LEU A 139 " --> pdb=" O PRO A 135 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N ARG A 140 " --> pdb=" O PRO A 136 " (cutoff:3.500A) removed outlier: 3.944A pdb=" N SER A 147 " --> pdb=" O ILE A 143 " (cutoff:3.500A) Processing helix chain 'A' and resid 151 through 168 removed outlier: 4.580A pdb=" N ASN A 155 " --> pdb=" O SER A 151 " (cutoff:3.500A) removed outlier: 5.285A pdb=" N THR A 156 " --> pdb=" O LYS A 152 " (cutoff:3.500A) removed outlier: 5.237A pdb=" N ASP A 157 " --> pdb=" O MET A 153 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N LYS A 159 " --> pdb=" O ASN A 155 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N LEU A 165 " --> pdb=" O PHE A 161 " (cutoff:3.500A) removed outlier: 4.788A pdb=" N LYS A 166 " --> pdb=" O LEU A 162 " (cutoff:3.500A) removed outlier: 4.871A pdb=" N TYR A 167 " --> pdb=" O GLY A 163 " (cutoff:3.500A) Processing helix chain 'A' and resid 169 through 179 removed outlier: 3.610A pdb=" N ASN A 178 " --> pdb=" O LYS A 174 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N MET A 179 " --> pdb=" O LEU A 175 " (cutoff:3.500A) Processing helix chain 'A' and resid 209 through 231 Processing helix chain 'A' and resid 304 through 320 removed outlier: 3.889A pdb=" N THR A 316 " --> pdb=" O TYR A 312 " (cutoff:3.500A) Proline residue: A 317 - end of helix Processing helix chain 'A' and resid 324 through 329 removed outlier: 4.555A pdb=" N TYR A 328 " --> pdb=" O ASP A 324 " (cutoff:3.500A) removed outlier: 4.330A pdb=" N TYR A 329 " --> pdb=" O LYS A 325 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 324 through 329' Processing helix chain 'A' and resid 332 through 343 Processing helix chain 'A' and resid 369 through 374 removed outlier: 3.557A pdb=" N VAL A 373 " --> pdb=" O SER A 369 " (cutoff:3.500A) removed outlier: 5.598A pdb=" N ILE A 374 " --> pdb=" O ILE A 370 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 369 through 374' Processing helix chain 'A' and resid 380 through 388 removed outlier: 3.924A pdb=" N LYS A 384 " --> pdb=" O ARG A 380 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N VAL A 385 " --> pdb=" O SER A 381 " (cutoff:3.500A) Proline residue: A 388 - end of helix Processing helix chain 'A' and resid 472 through 483 Proline residue: A 483 - end of helix Processing helix chain 'A' and resid 484 through 489 removed outlier: 8.068A pdb=" N ARG A 488 " --> pdb=" O PHE A 484 " (cutoff:3.500A) removed outlier: 5.514A pdb=" N THR A 489 " --> pdb=" O PRO A 485 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 484 through 489' Processing helix chain 'A' and resid 502 through 509 removed outlier: 4.004A pdb=" N PHE A 506 " --> pdb=" O ALA A 502 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N GLN A 508 " --> pdb=" O LYS A 504 " (cutoff:3.500A) removed outlier: 5.334A pdb=" N HIS A 509 " --> pdb=" O TRP A 505 " (cutoff:3.500A) Processing helix chain 'A' and resid 515 through 536 removed outlier: 3.538A pdb=" N ASN A 528 " --> pdb=" O LYS A 524 " (cutoff:3.500A) Proline residue: A 536 - end of helix Processing helix chain 'A' and resid 546 through 554 removed outlier: 3.664A pdb=" N ASN A 553 " --> pdb=" O LYS A 549 " (cutoff:3.500A) removed outlier: 4.563A pdb=" N THR A 554 " --> pdb=" O SER A 550 " (cutoff:3.500A) Processing helix chain 'A' and resid 563 through 587 removed outlier: 3.538A pdb=" N GLY A 587 " --> pdb=" O ILE A 583 " (cutoff:3.500A) Processing helix chain 'A' and resid 606 through 614 removed outlier: 3.671A pdb=" N ARG A 614 " --> pdb=" O ARG A 610 " (cutoff:3.500A) Processing helix chain 'A' and resid 616 through 642 removed outlier: 3.620A pdb=" N PHE A 639 " --> pdb=" O THR A 635 " (cutoff:3.500A) Processing helix chain 'A' and resid 645 through 660 removed outlier: 3.635A pdb=" N ASN A 658 " --> pdb=" O HIS A 654 " (cutoff:3.500A) Processing helix chain 'A' and resid 665 through 671 removed outlier: 4.533A pdb=" N TYR A 669 " --> pdb=" O GLY A 665 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N LYS A 670 " --> pdb=" O ILE A 666 " (cutoff:3.500A) removed outlier: 3.734A pdb=" N TYR A 671 " --> pdb=" O TYR A 667 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 665 through 671' Processing helix chain 'A' and resid 672 through 692 removed outlier: 4.487A pdb=" N GLN A 676 " --> pdb=" O LYS A 672 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N TYR A 689 " --> pdb=" O HIS A 685 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N LYS A 690 " --> pdb=" O ILE A 686 " (cutoff:3.500A) Processing helix chain 'A' and resid 705 through 734 removed outlier: 3.583A pdb=" N VAL A 710 " --> pdb=" O PRO A 706 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N TRP A 711 " --> pdb=" O ALA A 707 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N GLY A 717 " --> pdb=" O ASN A 713 " (cutoff:3.500A) Proline residue: A 720 - end of helix removed outlier: 3.620A pdb=" N PHE A 734 " --> pdb=" O ILE A 730 " (cutoff:3.500A) Processing helix chain 'A' and resid 749 through 771 removed outlier: 3.540A pdb=" N MET A 763 " --> pdb=" O ARG A 759 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N ASP A 765 " --> pdb=" O SER A 761 " (cutoff:3.500A) removed outlier: 3.776A pdb=" N MET A 769 " --> pdb=" O ASP A 765 " (cutoff:3.500A) Proline residue: A 771 - end of helix Processing helix chain 'A' and resid 776 through 796 removed outlier: 4.121A pdb=" N ARG A 780 " --> pdb=" O GLN A 776 " (cutoff:3.500A) removed outlier: 4.046A pdb=" N THR A 781 " --> pdb=" O LYS A 777 " (cutoff:3.500A) Processing helix chain 'A' and resid 805 through 837 Processing helix chain 'A' and resid 841 through 871 Processing helix chain 'A' and resid 875 through 894 removed outlier: 3.574A pdb=" N MET A 886 " --> pdb=" O ILE A 882 " (cutoff:3.500A) Processing helix chain 'A' and resid 907 through 924 removed outlier: 4.463A pdb=" N VAL A 922 " --> pdb=" O ASP A 918 " (cutoff:3.500A) removed outlier: 4.937A pdb=" N TYR A 923 " --> pdb=" O LEU A 919 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N ALA A 924 " --> pdb=" O LYS A 920 " (cutoff:3.500A) Processing helix chain 'A' and resid 930 through 947 removed outlier: 3.523A pdb=" N ILE A 940 " --> pdb=" O GLU A 936 " (cutoff:3.500A) Proline residue: A 947 - end of helix Processing helix chain 'A' and resid 948 through 960 Processing helix chain 'A' and resid 986 through 1007 removed outlier: 3.934A pdb=" N THR A 991 " --> pdb=" O LEU A 987 " (cutoff:3.500A) Processing helix chain 'A' and resid 1020 through 1035 removed outlier: 3.772A pdb=" N LEU A1035 " --> pdb=" O GLY A1031 " (cutoff:3.500A) Processing helix chain 'A' and resid 1056 through 1061 removed outlier: 3.896A pdb=" N ILE A1061 " --> pdb=" O MET A1057 " (cutoff:3.500A) Processing helix chain 'A' and resid 1062 through 1074 removed outlier: 3.833A pdb=" N LEU A1072 " --> pdb=" O ARG A1068 " (cutoff:3.500A) removed outlier: 4.201A pdb=" N ILE A1073 " --> pdb=" O LEU A1069 " (cutoff:3.500A) Processing helix chain 'A' and resid 1075 through 1088 removed outlier: 3.826A pdb=" N ASN A1086 " --> pdb=" O ILE A1082 " (cutoff:3.500A) removed outlier: 3.892A pdb=" N ASN A1087 " --> pdb=" O THR A1083 " (cutoff:3.500A) removed outlier: 4.953A pdb=" N VAL A1088 " --> pdb=" O ALA A1084 " (cutoff:3.500A) Processing helix chain 'A' and resid 1109 through 1127 removed outlier: 3.550A pdb=" N ILE A1113 " --> pdb=" O PHE A1109 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N VAL A1120 " --> pdb=" O TYR A1116 " (cutoff:3.500A) removed outlier: 3.932A pdb=" N ILE A1121 " --> pdb=" O TYR A1117 " (cutoff:3.500A) Processing helix chain 'A' and resid 1128 through 1136 Processing helix chain 'A' and resid 1149 through 1156 removed outlier: 4.916A pdb=" N HIS A1156 " --> pdb=" O VAL A1152 " (cutoff:3.500A) Processing helix chain 'A' and resid 1175 through 1191 removed outlier: 3.521A pdb=" N LEU A1182 " --> pdb=" O GLU A1178 " (cutoff:3.500A) Proline residue: A1191 - end of helix Processing helix chain 'A' and resid 1196 through 1201 removed outlier: 5.642A pdb=" N GLY A1200 " --> pdb=" O GLU A1196 " (cutoff:3.500A) removed outlier: 4.545A pdb=" N TYR A1201 " --> pdb=" O ASN A1197 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1196 through 1201' Processing helix chain 'A' and resid 1216 through 1235 removed outlier: 3.533A pdb=" N LEU A1222 " --> pdb=" O GLN A1218 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N PHE A1227 " --> pdb=" O GLY A1223 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N SER A1232 " --> pdb=" O TRP A1228 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N ARG A1233 " --> pdb=" O GLU A1229 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N VAL A1234 " --> pdb=" O ILE A1230 " (cutoff:3.500A) Proline residue: A1235 - end of helix Processing helix chain 'A' and resid 1242 through 1247 removed outlier: 3.544A pdb=" N ALA A1246 " --> pdb=" O LYS A1242 " (cutoff:3.500A) removed outlier: 5.415A pdb=" N PHE A1247 " --> pdb=" O TRP A1243 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1242 through 1247' Processing helix chain 'A' and resid 1271 through 1276 removed outlier: 3.721A pdb=" N MET A1275 " --> pdb=" O PRO A1271 " (cutoff:3.500A) removed outlier: 5.993A pdb=" N GLU A1276 " --> pdb=" O ARG A1272 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1271 through 1276' Processing helix chain 'A' and resid 1305 through 1322 removed outlier: 3.602A pdb=" N MET A1321 " --> pdb=" O ARG A1317 " (cutoff:3.500A) Processing helix chain 'A' and resid 1327 through 1347 removed outlier: 3.706A pdb=" N TYR A1345 " --> pdb=" O SER A1341 " (cutoff:3.500A) Processing helix chain 'A' and resid 1348 through 1354 removed outlier: 4.341A pdb=" N ALA A1352 " --> pdb=" O GLU A1348 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N THR A1353 " --> pdb=" O ALA A1349 " (cutoff:3.500A) removed outlier: 5.096A pdb=" N GLU A1354 " --> pdb=" O ILE A1350 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1348 through 1354' Processing helix chain 'A' and resid 1355 through 1376 removed outlier: 3.528A pdb=" N VAL A1371 " --> pdb=" O ILE A1367 " (cutoff:3.500A) Processing helix chain 'A' and resid 1379 through 1384 removed outlier: 3.658A pdb=" N PHE A1383 " --> pdb=" O MET A1379 " (cutoff:3.500A) Proline residue: A1384 - end of helix No H-bonds generated for 'chain 'A' and resid 1379 through 1384' Processing helix chain 'A' and resid 1385 through 1390 Processing helix chain 'A' and resid 1411 through 1418 removed outlier: 4.044A pdb=" N GLN A1417 " --> pdb=" O SER A1413 " (cutoff:3.500A) Processing helix chain 'A' and resid 1439 through 1445 removed outlier: 4.375A pdb=" N TYR A1443 " --> pdb=" O THR A1439 " (cutoff:3.500A) removed outlier: 3.908A pdb=" N ILE A1444 " --> pdb=" O ILE A1440 " (cutoff:3.500A) removed outlier: 5.717A pdb=" N THR A1445 " --> pdb=" O PHE A1441 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1439 through 1445' Processing helix chain 'A' and resid 1446 through 1472 Processing helix chain 'A' and resid 1476 through 1482 removed outlier: 4.458A pdb=" N LEU A1480 " --> pdb=" O ALA A1476 " (cutoff:3.500A) removed outlier: 4.814A pdb=" N GLY A1482 " --> pdb=" O GLU A1478 " (cutoff:3.500A) Processing helix chain 'A' and resid 1490 through 1496 removed outlier: 4.356A pdb=" N LEU A1494 " --> pdb=" O ARG A1490 " (cutoff:3.500A) removed outlier: 4.514A pdb=" N PHE A1495 " --> pdb=" O ILE A1491 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N GLN A1496 " --> pdb=" O SER A1492 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1490 through 1496' Processing helix chain 'A' and resid 1498 through 1506 removed outlier: 4.559A pdb=" N TYR A1504 " --> pdb=" O HIS A1500 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N ASP A1505 " --> pdb=" O THR A1501 " (cutoff:3.500A) removed outlier: 5.759A pdb=" N ARG A1506 " --> pdb=" O LEU A1502 " (cutoff:3.500A) Processing helix chain 'A' and resid 1507 through 1519 removed outlier: 3.723A pdb=" N LYS A1515 " --> pdb=" O ARG A1511 " (cutoff:3.500A) removed outlier: 5.022A pdb=" N GLN A1516 " --> pdb=" O ARG A1512 " (cutoff:3.500A) removed outlier: 5.477A pdb=" N TYR A1517 " --> pdb=" O GLU A1513 " (cutoff:3.500A) removed outlier: 4.100A pdb=" N SER A1518 " --> pdb=" O PHE A1514 " (cutoff:3.500A) Processing helix chain 'A' and resid 1539 through 1551 removed outlier: 3.728A pdb=" N ARG A1543 " --> pdb=" O LEU A1539 " (cutoff:3.500A) Processing helix chain 'A' and resid 1552 through 1561 removed outlier: 4.145A pdb=" N HIS A1559 " --> pdb=" O THR A1555 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N THR A1560 " --> pdb=" O ILE A1556 " (cutoff:3.500A) removed outlier: 5.182A pdb=" N LEU A1561 " --> pdb=" O LEU A1557 " (cutoff:3.500A) Processing helix chain 'A' and resid 1591 through 1596 Processing helix chain 'A' and resid 1600 through 1611 Processing helix chain 'A' and resid 1638 through 1650 removed outlier: 3.629A pdb=" N SER A1644 " --> pdb=" O THR A1640 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N ILE A1648 " --> pdb=" O SER A1644 " (cutoff:3.500A) removed outlier: 3.650A pdb=" N ARG A1650 " --> pdb=" O ILE A1646 " (cutoff:3.500A) Processing helix chain 'A' and resid 1652 through 1677 removed outlier: 3.536A pdb=" N HIS A1658 " --> pdb=" O TRP A1654 " (cutoff:3.500A) removed outlier: 3.920A pdb=" N GLY A1671 " --> pdb=" O GLN A1667 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N LEU A1673 " --> pdb=" O LEU A1669 " (cutoff:3.500A) removed outlier: 6.435A pdb=" N ASP A1674 " --> pdb=" O ASP A1670 " (cutoff:3.500A) removed outlier: 6.202A pdb=" N VAL A1675 " --> pdb=" O GLY A1671 " (cutoff:3.500A) Processing helix chain 'A' and resid 1747 through 1762 removed outlier: 3.926A pdb=" N THR A1761 " --> pdb=" O LEU A1757 " (cutoff:3.500A) Processing helix chain 'A' and resid 1793 through 1808 removed outlier: 3.789A pdb=" N LYS A1807 " --> pdb=" O ARG A1803 " (cutoff:3.500A) Processing helix chain 'A' and resid 1809 through 1824 Processing helix chain 'A' and resid 1831 through 1836 Processing helix chain 'A' and resid 1840 through 1845 removed outlier: 4.599A pdb=" N PHE A1844 " --> pdb=" O TYR A1840 " (cutoff:3.500A) removed outlier: 4.585A pdb=" N ASN A1845 " --> pdb=" O ALA A1841 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1840 through 1845' Processing helix chain 'A' and resid 1896 through 1901 removed outlier: 3.856A pdb=" N ALA A1900 " --> pdb=" O THR A1896 " (cutoff:3.500A) removed outlier: 5.190A pdb=" N GLY A1901 " --> pdb=" O SER A1897 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1896 through 1901' Processing helix chain 'A' and resid 1904 through 1925 removed outlier: 4.708A pdb=" N LYS A1910 " --> pdb=" O SER A1906 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N TRP A1911 " --> pdb=" O GLN A1907 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N LEU A1924 " --> pdb=" O LEU A1920 " (cutoff:3.500A) Proline residue: A1925 - end of helix Processing helix chain 'A' and resid 1940 through 1949 removed outlier: 3.587A pdb=" N HIS A1947 " --> pdb=" O PRO A1943 " (cutoff:3.500A) removed outlier: 4.381A pdb=" N LEU A1949 " --> pdb=" O GLU A1945 " (cutoff:3.500A) Processing helix chain 'A' and resid 1964 through 1972 removed outlier: 4.398A pdb=" N ALA A1968 " --> pdb=" O PRO A1964 " (cutoff:3.500A) removed outlier: 5.181A pdb=" N MET A1969 " --> pdb=" O PHE A1965 " (cutoff:3.500A) removed outlier: 5.486A pdb=" N SER A1970 " --> pdb=" O SER A1966 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N ILE A1971 " --> pdb=" O ALA A1967 " (cutoff:3.500A) removed outlier: 5.768A pdb=" N ASP A1972 " --> pdb=" O ALA A1968 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1964 through 1972' Processing helix chain 'A' and resid 1973 through 1981 removed outlier: 3.603A pdb=" N VAL A1977 " --> pdb=" O LYS A1973 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N VAL A1978 " --> pdb=" O LEU A1974 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N ALA A1981 " --> pdb=" O VAL A1977 " (cutoff:3.500A) Processing helix chain 'A' and resid 1994 through 1999 removed outlier: 4.735A pdb=" N ARG A1998 " --> pdb=" O ASP A1994 " (cutoff:3.500A) Processing helix chain 'A' and resid 2000 through 2018 Processing helix chain 'A' and resid 2019 through 2028 removed outlier: 3.545A pdb=" N ILE A2025 " --> pdb=" O SER A2021 " (cutoff:3.500A) Processing helix chain 'A' and resid 2044 through 2068 removed outlier: 3.693A pdb=" N ILE A2049 " --> pdb=" O ASP A2045 " (cutoff:3.500A) Processing helix chain 'A' and resid 2070 through 2075 removed outlier: 4.043A pdb=" N LEU A2074 " --> pdb=" O ASN A2070 " (cutoff:3.500A) removed outlier: 5.377A pdb=" N THR A2075 " --> pdb=" O ILE A2071 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 2070 through 2075' Processing helix chain 'A' and resid 2076 through 2085 Processing helix chain 'A' and resid 2151 through 2166 removed outlier: 3.679A pdb=" N SER A2155 " --> pdb=" O GLU A2151 " (cutoff:3.500A) removed outlier: 3.867A pdb=" N THR A2160 " --> pdb=" O ALA A2156 " (cutoff:3.500A) removed outlier: 4.408A pdb=" N LEU A2161 " --> pdb=" O ILE A2157 " (cutoff:3.500A) removed outlier: 4.251A pdb=" N LEU A2162 " --> pdb=" O ALA A2158 " (cutoff:3.500A) removed outlier: 5.672A pdb=" N TYR A2163 " --> pdb=" O ASN A2159 " (cutoff:3.500A) removed outlier: 6.128A pdb=" N LEU A2164 " --> pdb=" O THR A2160 " (cutoff:3.500A) removed outlier: 4.535A pdb=" N ARG A2165 " --> pdb=" O LEU A2161 " (cutoff:3.500A) removed outlier: 4.879A pdb=" N LEU A2166 " --> pdb=" O LEU A2162 " (cutoff:3.500A) Processing helix chain 'A' and resid 2186 through 2197 removed outlier: 3.799A pdb=" N LEU A2190 " --> pdb=" O PRO A2186 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N PHE A2193 " --> pdb=" O LEU A2189 " (cutoff:3.500A) Processing helix chain 'A' and resid 2270 through 2281 Processing helix chain 'A' and resid 2308 through 2319 removed outlier: 3.687A pdb=" N LYS A2319 " --> pdb=" O GLY A2315 " (cutoff:3.500A) Processing helix chain 'A' and resid 2384 through 2389 Proline residue: A2389 - end of helix Processing helix chain 'A' and resid 2390 through 2396 removed outlier: 5.494A pdb=" N PHE A2395 " --> pdb=" O HIS A2391 " (cutoff:3.500A) removed outlier: 4.152A pdb=" N SER A2396 " --> pdb=" O PHE A2392 " (cutoff:3.500A) Processing helix chain 'A' and resid 1687 through 1692 removed outlier: 4.629A pdb=" N SER A1691 " --> pdb=" O PRO A1688 " (cutoff:3.500A) Processing helix chain 'A' and resid 1529 through 1534 removed outlier: 4.313A pdb=" N GLY A1534 " --> pdb=" O ASN A1529 " (cutoff:3.500A) No H-bonds generated for 'chain 'A' and resid 1529 through 1534' Processing helix chain 'C' and resid 109 through 114 removed outlier: 3.506A pdb=" N ILE C 113 " --> pdb=" O LEU C 109 " (cutoff:3.500A) Proline residue: C 114 - end of helix No H-bonds generated for 'chain 'C' and resid 109 through 114' Processing helix chain 'C' and resid 119 through 130 removed outlier: 3.909A pdb=" N ALA C 127 " --> pdb=" O MET C 123 " (cutoff:3.500A) removed outlier: 4.605A pdb=" N ASN C 128 " --> pdb=" O LEU C 124 " (cutoff:3.500A) removed outlier: 4.941A pdb=" N ILE C 129 " --> pdb=" O SER C 125 " (cutoff:3.500A) Proline residue: C 130 - end of helix Processing helix chain 'C' and resid 145 through 159 removed outlier: 3.652A pdb=" N LEU C 152 " --> pdb=" O SER C 148 " (cutoff:3.500A) removed outlier: 3.800A pdb=" N LEU C 153 " --> pdb=" O LEU C 149 " (cutoff:3.500A) removed outlier: 3.533A pdb=" N ASP C 156 " --> pdb=" O LEU C 152 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N SER C 157 " --> pdb=" O LEU C 153 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N HIS C 158 " --> pdb=" O VAL C 154 " (cutoff:3.500A) removed outlier: 4.999A pdb=" N LYS C 159 " --> pdb=" O ILE C 155 " (cutoff:3.500A) Processing helix chain 'C' and resid 165 through 171 Processing helix chain 'C' and resid 181 through 188 Processing helix chain 'C' and resid 221 through 232 removed outlier: 3.654A pdb=" N THR C 225 " --> pdb=" O PHE C 221 " (cutoff:3.500A) Processing helix chain 'C' and resid 246 through 260 removed outlier: 3.505A pdb=" N SER C 256 " --> pdb=" O LEU C 252 " (cutoff:3.500A) Processing helix chain 'C' and resid 269 through 275 removed outlier: 4.062A pdb=" N LEU C 273 " --> pdb=" O LYS C 269 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ILE C 274 " --> pdb=" O LEU C 270 " (cutoff:3.500A) Processing helix chain 'C' and resid 280 through 300 removed outlier: 3.741A pdb=" N TYR C 285 " --> pdb=" O PRO C 281 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N SER C 297 " --> pdb=" O ALA C 293 " (cutoff:3.500A) removed outlier: 3.977A pdb=" N PHE C 298 " --> pdb=" O ASN C 294 " (cutoff:3.500A) removed outlier: 4.901A pdb=" N LYS C 300 " --> pdb=" O ASN C 296 " (cutoff:3.500A) Processing helix chain 'C' and resid 323 through 331 removed outlier: 3.580A pdb=" N SER C 329 " --> pdb=" O LYS C 325 " (cutoff:3.500A) Processing helix chain 'C' and resid 332 through 337 removed outlier: 4.205A pdb=" N ILE C 336 " --> pdb=" O TYR C 332 " (cutoff:3.500A) Proline residue: C 337 - end of helix No H-bonds generated for 'chain 'C' and resid 332 through 337' Processing helix chain 'C' and resid 338 through 349 removed outlier: 4.933A pdb=" N ASP C 342 " --> pdb=" O SER C 338 " (cutoff:3.500A) removed outlier: 4.706A pdb=" N ASP C 343 " --> pdb=" O SER C 339 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N THR C 345 " --> pdb=" O ILE C 341 " (cutoff:3.500A) removed outlier: 4.205A pdb=" N THR C 346 " --> pdb=" O ASP C 342 " (cutoff:3.500A) removed outlier: 4.036A pdb=" N ARG C 347 " --> pdb=" O ASP C 343 " (cutoff:3.500A) removed outlier: 3.901A pdb=" N LEU C 348 " --> pdb=" O PHE C 344 " (cutoff:3.500A) removed outlier: 4.731A pdb=" N TRP C 349 " --> pdb=" O THR C 345 " (cutoff:3.500A) Processing helix chain 'C' and resid 371 through 390 removed outlier: 5.197A pdb=" N ILE C 379 " --> pdb=" O GLU C 375 " (cutoff:3.500A) Proline residue: C 380 - end of helix Processing helix chain 'C' and resid 392 through 404 removed outlier: 3.760A pdb=" N ASN C 398 " --> pdb=" O ASP C 394 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N LEU C 399 " --> pdb=" O LYS C 395 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N PHE C 404 " --> pdb=" O LEU C 400 " (cutoff:3.500A) Processing helix chain 'C' and resid 409 through 416 removed outlier: 3.884A pdb=" N LEU C 413 " --> pdb=" O SER C 409 " (cutoff:3.500A) removed outlier: 3.921A pdb=" N GLN C 414 " --> pdb=" O GLN C 410 " (cutoff:3.500A) removed outlier: 3.888A pdb=" N TYR C 415 " --> pdb=" O GLU C 411 " (cutoff:3.500A) removed outlier: 5.994A pdb=" N ASP C 416 " --> pdb=" O ALA C 412 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 409 through 416' Processing helix chain 'C' and resid 417 through 430 removed outlier: 4.668A pdb=" N ARG C 430 " --> pdb=" O GLN C 426 " (cutoff:3.500A) Processing helix chain 'C' and resid 432 through 449 removed outlier: 3.551A pdb=" N ARG C 441 " --> pdb=" O ASP C 437 " (cutoff:3.500A) removed outlier: 5.304A pdb=" N GLN C 444 " --> pdb=" O THR C 440 " (cutoff:3.500A) Proline residue: C 445 - end of helix removed outlier: 3.944A pdb=" N LEU C 448 " --> pdb=" O GLN C 444 " (cutoff:3.500A) Processing helix chain 'C' and resid 450 through 457 Processing helix chain 'C' and resid 503 through 516 removed outlier: 4.578A pdb=" N GLU C 508 " --> pdb=" O THR C 504 " (cutoff:3.500A) removed outlier: 5.366A pdb=" N SER C 509 " --> pdb=" O SER C 505 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N ARG C 510 " --> pdb=" O GLN C 506 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N LEU C 515 " --> pdb=" O GLN C 511 " (cutoff:3.500A) removed outlier: 4.149A pdb=" N HIS C 516 " --> pdb=" O LYS C 512 " (cutoff:3.500A) Processing helix chain 'C' and resid 567 through 572 removed outlier: 4.690A pdb=" N TYR C 571 " --> pdb=" O ILE C 567 " (cutoff:3.500A) removed outlier: 5.499A pdb=" N ILE C 572 " --> pdb=" O SER C 568 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 567 through 572' Processing helix chain 'C' and resid 582 through 589 removed outlier: 5.452A pdb=" N MET C 586 " --> pdb=" O SER C 582 " (cutoff:3.500A) removed outlier: 3.974A pdb=" N LYS C 587 " --> pdb=" O LYS C 583 " (cutoff:3.500A) Processing helix chain 'C' and resid 614 through 629 removed outlier: 3.727A pdb=" N ASP C 620 " --> pdb=" O PRO C 616 " (cutoff:3.500A) removed outlier: 3.522A pdb=" N ALA C 621 " --> pdb=" O LYS C 617 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N LYS C 624 " --> pdb=" O ASP C 620 " (cutoff:3.500A) Processing helix chain 'C' and resid 648 through 661 Processing helix chain 'C' and resid 716 through 726 removed outlier: 3.777A pdb=" N GLN C 721 " --> pdb=" O SER C 717 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N LEU C 723 " --> pdb=" O MET C 719 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N ARG C 725 " --> pdb=" O GLN C 721 " (cutoff:3.500A) Processing helix chain 'C' and resid 743 through 754 Processing helix chain 'C' and resid 758 through 765 removed outlier: 4.071A pdb=" N ASN C 764 " --> pdb=" O LEU C 760 " (cutoff:3.500A) Processing helix chain 'C' and resid 778 through 784 removed outlier: 4.489A pdb=" N GLU C 782 " --> pdb=" O THR C 778 " (cutoff:3.500A) Processing helix chain 'C' and resid 785 through 806 removed outlier: 3.767A pdb=" N LYS C 790 " --> pdb=" O GLU C 786 " (cutoff:3.500A) removed outlier: 4.245A pdb=" N TYR C 791 " --> pdb=" O LEU C 787 " (cutoff:3.500A) removed outlier: 4.938A pdb=" N GLU C 793 " --> pdb=" O SER C 789 " (cutoff:3.500A) removed outlier: 5.084A pdb=" N GLN C 794 " --> pdb=" O LYS C 790 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N GLY C 798 " --> pdb=" O GLN C 794 " (cutoff:3.500A) removed outlier: 4.346A pdb=" N GLU C 805 " --> pdb=" O TRP C 801 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N GLY C 806 " --> pdb=" O ALA C 802 " (cutoff:3.500A) Processing helix chain 'C' and resid 832 through 854 removed outlier: 4.110A pdb=" N SER C 836 " --> pdb=" O ASP C 832 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N GLN C 837 " --> pdb=" O VAL C 833 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N ILE C 838 " --> pdb=" O MET C 834 " (cutoff:3.500A) removed outlier: 3.982A pdb=" N ILE C 839 " --> pdb=" O LYS C 835 " (cutoff:3.500A) Proline residue: C 840 - end of helix removed outlier: 3.572A pdb=" N THR C 852 " --> pdb=" O VAL C 848 " (cutoff:3.500A) removed outlier: 4.234A pdb=" N ALA C 853 " --> pdb=" O GLY C 849 " (cutoff:3.500A) removed outlier: 4.433A pdb=" N ILE C 854 " --> pdb=" O LEU C 850 " (cutoff:3.500A) Processing helix chain 'C' and resid 872 through 884 removed outlier: 5.184A pdb=" N ARG C 884 " --> pdb=" O MET C 880 " (cutoff:3.500A) Processing helix chain 'C' and resid 907 through 912 removed outlier: 3.514A pdb=" N SER C 911 " --> pdb=" O PRO C 907 " (cutoff:3.500A) removed outlier: 4.767A pdb=" N ALA C 912 " --> pdb=" O VAL C 908 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 907 through 912' Processing helix chain 'C' and resid 913 through 923 removed outlier: 3.851A pdb=" N ASN C 923 " --> pdb=" O ARG C 919 " (cutoff:3.500A) Processing helix chain 'C' and resid 958 through 975 removed outlier: 3.526A pdb=" N LEU C 962 " --> pdb=" O PRO C 958 " (cutoff:3.500A) removed outlier: 5.085A pdb=" N SER C 963 " --> pdb=" O ILE C 959 " (cutoff:3.500A) removed outlier: 5.526A pdb=" N ARG C 964 " --> pdb=" O ASN C 960 " (cutoff:3.500A) Processing helix chain 'C' and resid 988 through 994 removed outlier: 4.724A pdb=" N TYR C 992 " --> pdb=" O THR C 988 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N ILE C 993 " --> pdb=" O LEU C 989 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N SER C 994 " --> pdb=" O GLU C 990 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 988 through 994' Processing helix chain 'C' and resid 995 through 1005 removed outlier: 3.588A pdb=" N GLN C1000 " --> pdb=" O GLU C 996 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N GLY C1005 " --> pdb=" O LEU C1001 " (cutoff:3.500A) Processing helix chain 'C' and resid 737 through 742 removed outlier: 3.836A pdb=" N ILE C 740 " --> pdb=" O ILE C 737 " (cutoff:3.500A) removed outlier: 4.664A pdb=" N MET C 741 " --> pdb=" O ASP C 738 " (cutoff:3.500A) removed outlier: 3.608A pdb=" N ASP C 742 " --> pdb=" O GLY C 739 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 737 through 742' Processing helix chain 'D' and resid 114 through 132 removed outlier: 4.062A pdb=" N GLU D 118 " --> pdb=" O PRO D 114 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N THR D 119 " --> pdb=" O SER D 115 " (cutoff:3.500A) removed outlier: 4.526A pdb=" N GLN D 122 " --> pdb=" O GLU D 118 " (cutoff:3.500A) Processing helix chain 'D' and resid 136 through 155 removed outlier: 3.737A pdb=" N ILE D 146 " --> pdb=" O GLY D 142 " (cutoff:3.500A) removed outlier: 3.623A pdb=" N ILE D 148 " --> pdb=" O ALA D 144 " (cutoff:3.500A) removed outlier: 3.768A pdb=" N ARG D 149 " --> pdb=" O ASP D 145 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N GLU D 153 " --> pdb=" O ARG D 149 " (cutoff:3.500A) removed outlier: 4.960A pdb=" N ASN D 154 " --> pdb=" O GLN D 150 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N GLU D 155 " --> pdb=" O LEU D 151 " (cutoff:3.500A) Processing helix chain 'D' and resid 161 through 174 removed outlier: 3.660A pdb=" N ARG D 165 " --> pdb=" O ASN D 161 " (cutoff:3.500A) Processing helix chain 'D' and resid 178 through 192 removed outlier: 3.780A pdb=" N GLU D 184 " --> pdb=" O LEU D 180 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N LEU D 185 " --> pdb=" O LYS D 181 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ASN D 191 " --> pdb=" O LYS D 187 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N ILE D 192 " --> pdb=" O LEU D 188 " (cutoff:3.500A) Processing helix chain 'D' and resid 428 through 434 removed outlier: 3.784A pdb=" N ILE D 432 " --> pdb=" O ASP D 428 " (cutoff:3.500A) removed outlier: 5.739A pdb=" N PHE D 434 " --> pdb=" O GLU D 430 " (cutoff:3.500A) Processing helix chain 'D' and resid 435 through 441 removed outlier: 3.539A pdb=" N LYS D 439 " --> pdb=" O ASP D 435 " (cutoff:3.500A) removed outlier: 4.603A pdb=" N LEU D 440 " --> pdb=" O GLU D 436 " (cutoff:3.500A) removed outlier: 4.938A pdb=" N MET D 441 " --> pdb=" O SER D 437 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 435 through 441' Processing helix chain 'D' and resid 484 through 492 removed outlier: 5.885A pdb=" N GLU D 489 " --> pdb=" O ASP D 485 " (cutoff:3.500A) removed outlier: 6.193A pdb=" N ALA D 490 " --> pdb=" O TRP D 486 " (cutoff:3.500A) removed outlier: 4.695A pdb=" N PHE D 491 " --> pdb=" O CYS D 487 " (cutoff:3.500A) Proline residue: D 492 - end of helix Processing helix chain 'D' and resid 500 through 511 removed outlier: 4.146A pdb=" N LYS D 505 " --> pdb=" O PRO D 501 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N VAL D 506 " --> pdb=" O ILE D 502 " (cutoff:3.500A) removed outlier: 4.188A pdb=" N PHE D 507 " --> pdb=" O GLN D 503 " (cutoff:3.500A) removed outlier: 5.157A pdb=" N HIS D 508 " --> pdb=" O SER D 504 " (cutoff:3.500A) removed outlier: 5.293A pdb=" N ALA D 509 " --> pdb=" O LYS D 505 " (cutoff:3.500A) Processing helix chain 'D' and resid 526 through 543 removed outlier: 3.621A pdb=" N ILE D 530 " --> pdb=" O GLY D 526 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N LEU D 532 " --> pdb=" O THR D 528 " (cutoff:3.500A) removed outlier: 3.540A pdb=" N THR D 534 " --> pdb=" O ILE D 530 " (cutoff:3.500A) removed outlier: 4.013A pdb=" N HIS D 541 " --> pdb=" O LYS D 537 " (cutoff:3.500A) removed outlier: 4.582A pdb=" N HIS D 542 " --> pdb=" O ALA D 538 " (cutoff:3.500A) Processing helix chain 'D' and resid 563 through 579 removed outlier: 3.733A pdb=" N GLU D 569 " --> pdb=" O ALA D 565 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N GLN D 570 " --> pdb=" O LEU D 566 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N ARG D 572 " --> pdb=" O GLN D 568 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N ARG D 576 " --> pdb=" O ARG D 572 " (cutoff:3.500A) Processing helix chain 'D' and resid 591 through 596 removed outlier: 3.576A pdb=" N SER D 595 " --> pdb=" O ASP D 591 " (cutoff:3.500A) Processing helix chain 'D' and resid 597 through 603 removed outlier: 3.708A pdb=" N THR D 602 " --> pdb=" O GLN D 598 " (cutoff:3.500A) removed outlier: 4.808A pdb=" N GLN D 603 " --> pdb=" O ILE D 599 " (cutoff:3.500A) Processing helix chain 'D' and resid 608 through 619 removed outlier: 3.644A pdb=" N TRP D 612 " --> pdb=" O THR D 608 " (cutoff:3.500A) removed outlier: 5.316A pdb=" N SER D 619 " --> pdb=" O THR D 615 " (cutoff:3.500A) Processing helix chain 'D' and resid 621 through 628 removed outlier: 3.673A pdb=" N GLU D 626 " --> pdb=" O LEU D 622 " (cutoff:3.500A) removed outlier: 4.456A pdb=" N LEU D 627 " --> pdb=" O ALA D 623 " (cutoff:3.500A) removed outlier: 3.805A pdb=" N VAL D 628 " --> pdb=" O ILE D 624 " (cutoff:3.500A) Processing helix chain 'D' and resid 643 through 657 removed outlier: 3.863A pdb=" N LEU D 647 " --> pdb=" O ARG D 643 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N SER D 649 " --> pdb=" O PRO D 645 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N ALA D 657 " --> pdb=" O ARG D 653 " (cutoff:3.500A) Processing helix chain 'D' and resid 676 through 685 Processing helix chain 'D' and resid 687 through 692 removed outlier: 3.665A pdb=" N LEU D 691 " --> pdb=" O PRO D 687 " (cutoff:3.500A) removed outlier: 5.944A pdb=" N PHE D 692 " --> pdb=" O LYS D 688 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 687 through 692' Processing helix chain 'D' and resid 714 through 737 removed outlier: 3.561A pdb=" N ASN D 723 " --> pdb=" O LEU D 719 " (cutoff:3.500A) Processing helix chain 'D' and resid 746 through 765 removed outlier: 3.674A pdb=" N THR D 750 " --> pdb=" O SER D 746 " (cutoff:3.500A) removed outlier: 3.983A pdb=" N SER D 751 " --> pdb=" O ARG D 747 " (cutoff:3.500A) Processing helix chain 'D' and resid 766 through 772 removed outlier: 4.230A pdb=" N LEU D 770 " --> pdb=" O ILE D 766 " (cutoff:3.500A) removed outlier: 4.116A pdb=" N THR D 771 " --> pdb=" O THR D 767 " (cutoff:3.500A) removed outlier: 5.248A pdb=" N LYS D 772 " --> pdb=" O HIS D 768 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 766 through 772' Processing helix chain 'D' and resid 774 through 788 removed outlier: 3.583A pdb=" N ALA D 786 " --> pdb=" O LYS D 782 " (cutoff:3.500A) removed outlier: 4.704A pdb=" N ASN D 787 " --> pdb=" O THR D 783 " (cutoff:3.500A) removed outlier: 4.282A pdb=" N VAL D 788 " --> pdb=" O GLU D 784 " (cutoff:3.500A) Processing helix chain 'D' and resid 790 through 800 removed outlier: 3.577A pdb=" N LEU D 796 " --> pdb=" O SER D 792 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N SER D 799 " --> pdb=" O LYS D 795 " (cutoff:3.500A) Processing helix chain 'D' and resid 809 through 823 removed outlier: 3.700A pdb=" N GLU D 817 " --> pdb=" O ARG D 813 " (cutoff:3.500A) Processing helix chain 'D' and resid 831 through 837 removed outlier: 4.475A pdb=" N ALA D 835 " --> pdb=" O THR D 831 " (cutoff:3.500A) removed outlier: 3.993A pdb=" N TRP D 836 " --> pdb=" O ALA D 832 " (cutoff:3.500A) Processing helix chain 'D' and resid 864 through 876 removed outlier: 4.130A pdb=" N ARG D 874 " --> pdb=" O GLN D 870 " (cutoff:3.500A) removed outlier: 4.427A pdb=" N ALA D 875 " --> pdb=" O MET D 871 " (cutoff:3.500A) removed outlier: 6.024A pdb=" N GLY D 876 " --> pdb=" O LEU D 872 " (cutoff:3.500A) Processing helix chain 'D' and resid 891 through 904 removed outlier: 3.847A pdb=" N VAL D 895 " --> pdb=" O ASP D 891 " (cutoff:3.500A) removed outlier: 4.808A pdb=" N GLN D 896 " --> pdb=" O GLN D 892 " (cutoff:3.500A) removed outlier: 5.428A pdb=" N TYR D 897 " --> pdb=" O SER D 893 " (cutoff:3.500A) removed outlier: 3.575A pdb=" N VAL D 901 " --> pdb=" O TYR D 897 " (cutoff:3.500A) removed outlier: 3.631A pdb=" N LEU D 902 " --> pdb=" O TYR D 898 " (cutoff:3.500A) Processing helix chain 'D' and resid 911 through 927 removed outlier: 3.966A pdb=" N LYS D 915 " --> pdb=" O GLN D 911 " (cutoff:3.500A) removed outlier: 5.076A pdb=" N VAL D 917 " --> pdb=" O VAL D 913 " (cutoff:3.500A) removed outlier: 6.280A pdb=" N ASP D 918 " --> pdb=" O SER D 914 " (cutoff:3.500A) removed outlier: 3.765A pdb=" N GLU D 923 " --> pdb=" O ASN D 919 " (cutoff:3.500A) Processing helix chain 'D' and resid 931 through 943 removed outlier: 3.544A pdb=" N ALA D 935 " --> pdb=" O CYS D 931 " (cutoff:3.500A) removed outlier: 4.259A pdb=" N TYR D 941 " --> pdb=" O ASN D 937 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N THR D 942 " --> pdb=" O TRP D 938 " (cutoff:3.500A) removed outlier: 5.836A pdb=" N TYR D 943 " --> pdb=" O LEU D 939 " (cutoff:3.500A) Processing helix chain 'D' and resid 944 through 952 removed outlier: 3.675A pdb=" N ALA D 950 " --> pdb=" O VAL D 946 " (cutoff:3.500A) Proline residue: D 952 - end of helix Processing helix chain 'D' and resid 959 through 964 removed outlier: 3.715A pdb=" N ASP D 963 " --> pdb=" O ASP D 959 " (cutoff:3.500A) Processing helix chain 'D' and resid 966 through 985 removed outlier: 4.029A pdb=" N ARG D 970 " --> pdb=" O LEU D 966 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N ILE D 980 " --> pdb=" O SER D 976 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N GLU D 985 " --> pdb=" O LEU D 981 " (cutoff:3.500A) Processing helix chain 'D' and resid 999 through 1009 removed outlier: 3.587A pdb=" N ASN D1003 " --> pdb=" O THR D 999 " (cutoff:3.500A) Processing helix chain 'D' and resid 1011 through 1022 removed outlier: 3.590A pdb=" N ARG D1020 " --> pdb=" O ASP D1016 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N LEU D1022 " --> pdb=" O TYR D1018 " (cutoff:3.500A) Processing helix chain 'D' and resid 1027 through 1038 removed outlier: 3.622A pdb=" N PHE D1032 " --> pdb=" O GLN D1028 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N ARG D1033 " --> pdb=" O ILE D1029 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N SER D1036 " --> pdb=" O PHE D1032 " (cutoff:3.500A) removed outlier: 4.084A pdb=" N SER D1038 " --> pdb=" O ILE D1034 " (cutoff:3.500A) Processing helix chain 'D' and resid 1049 through 1061 removed outlier: 4.838A pdb=" N GLU D1053 " --> pdb=" O GLU D1049 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N GLN D1056 " --> pdb=" O ARG D1052 " (cutoff:3.500A) removed outlier: 3.745A pdb=" N GLU D1059 " --> pdb=" O LYS D1055 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N LYS D1060 " --> pdb=" O GLN D1056 " (cutoff:3.500A) Processing helix chain 'D' and resid 1071 through 1086 removed outlier: 3.590A pdb=" N LYS D1075 " --> pdb=" O ASP D1071 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N ASN D1077 " --> pdb=" O LEU D1073 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N SER D1085 " --> pdb=" O GLN D1081 " (cutoff:3.500A) Processing helix chain 'D' and resid 1091 through 1120 removed outlier: 3.572A pdb=" N ASN D1095 " --> pdb=" O GLY D1091 " (cutoff:3.500A) removed outlier: 3.823A pdb=" N VAL D1099 " --> pdb=" O ASN D1095 " (cutoff:3.500A) removed outlier: 3.753A pdb=" N GLY D1106 " --> pdb=" O HIS D1102 " (cutoff:3.500A) removed outlier: 5.070A pdb=" N ARG D1107 " --> pdb=" O GLN D1103 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N GLY D1120 " --> pdb=" O CYS D1116 " (cutoff:3.500A) Processing helix chain 'D' and resid 1121 through 1138 removed outlier: 3.747A pdb=" N THR D1125 " --> pdb=" O TRP D1121 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N MET D1127 " --> pdb=" O HIS D1123 " (cutoff:3.500A) removed outlier: 3.683A pdb=" N THR D1136 " --> pdb=" O CYS D1132 " (cutoff:3.500A) Processing helix chain 'D' and resid 1144 through 1150 removed outlier: 4.703A pdb=" N GLN D1148 " --> pdb=" O CYS D1144 " (cutoff:3.500A) removed outlier: 4.565A pdb=" N PHE D1149 " --> pdb=" O PRO D1145 " (cutoff:3.500A) removed outlier: 5.321A pdb=" N LYS D1150 " --> pdb=" O LEU D1146 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1144 through 1150' Processing helix chain 'D' and resid 1153 through 1164 removed outlier: 3.540A pdb=" N ILE D1157 " --> pdb=" O PRO D1153 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N ARG D1159 " --> pdb=" O GLU D1155 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N ALA D1162 " --> pdb=" O LYS D1158 " (cutoff:3.500A) removed outlier: 4.894A pdb=" N THR D1164 " --> pdb=" O LEU D1160 " (cutoff:3.500A) Processing helix chain 'D' and resid 1166 through 1173 removed outlier: 4.067A pdb=" N TYR D1170 " --> pdb=" O PRO D1166 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N LEU D1171 " --> pdb=" O TRP D1167 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N GLN D1172 " --> pdb=" O GLY D1168 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N LEU D1173 " --> pdb=" O ASP D1169 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1166 through 1173' Processing helix chain 'D' and resid 1175 through 1184 Processing helix chain 'D' and resid 1185 through 1200 removed outlier: 5.409A pdb=" N LYS D1190 " --> pdb=" O GLU D1186 " (cutoff:3.500A) removed outlier: 5.967A pdb=" N GLN D1191 " --> pdb=" O LYS D1187 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N VAL D1192 " --> pdb=" O TYR D1188 " (cutoff:3.500A) removed outlier: 5.778A pdb=" N TYR D1193 " --> pdb=" O GLY D1189 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ASP D1194 " --> pdb=" O LYS D1190 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N PHE D1199 " --> pdb=" O LEU D1195 " (cutoff:3.500A) Proline residue: D1200 - end of helix Processing helix chain 'D' and resid 1260 through 1265 removed outlier: 5.883A pdb=" N GLY D1265 " --> pdb=" O PRO D1261 " (cutoff:3.500A) Processing helix chain 'D' and resid 1277 through 1284 removed outlier: 3.985A pdb=" N ASN D1282 " --> pdb=" O GLN D1278 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N ASN D1283 " --> pdb=" O HIS D1279 " (cutoff:3.500A) Processing helix chain 'D' and resid 1336 through 1344 removed outlier: 3.645A pdb=" N SER D1340 " --> pdb=" O ASN D1336 " (cutoff:3.500A) removed outlier: 4.500A pdb=" N VAL D1342 " --> pdb=" O ASP D1338 " (cutoff:3.500A) removed outlier: 5.067A pdb=" N PHE D1343 " --> pdb=" O PHE D1339 " (cutoff:3.500A) removed outlier: 4.619A pdb=" N GLU D1344 " --> pdb=" O SER D1340 " (cutoff:3.500A) Processing helix chain 'D' and resid 1349 through 1360 removed outlier: 4.186A pdb=" N GLN D1354 " --> pdb=" O LYS D1350 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N PHE D1356 " --> pdb=" O GLN D1352 " (cutoff:3.500A) removed outlier: 5.253A pdb=" N GLU D1357 " --> pdb=" O SER D1353 " (cutoff:3.500A) removed outlier: 5.804A pdb=" N SER D1358 " --> pdb=" O GLN D1354 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N LEU D1359 " --> pdb=" O VAL D1355 " (cutoff:3.500A) Processing helix chain 'D' and resid 1375 through 1391 removed outlier: 3.781A pdb=" N MET D1379 " --> pdb=" O GLY D1375 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N ALA D1383 " --> pdb=" O MET D1379 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N LEU D1384 " --> pdb=" O ALA D1380 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N LEU D1385 " --> pdb=" O GLU D1381 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N GLN D1390 " --> pdb=" O ASN D1386 " (cutoff:3.500A) removed outlier: 3.783A pdb=" N ASN D1391 " --> pdb=" O HIS D1387 " (cutoff:3.500A) Processing helix chain 'D' and resid 1401 through 1416 removed outlier: 3.679A pdb=" N ILE D1405 " --> pdb=" O SER D1401 " (cutoff:3.500A) removed outlier: 4.171A pdb=" N ASP D1406 " --> pdb=" O GLY D1402 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N SER D1410 " --> pdb=" O ASP D1406 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N LYS D1414 " --> pdb=" O SER D1410 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N ARG D1415 " --> pdb=" O ASP D1411 " (cutoff:3.500A) Processing helix chain 'D' and resid 1431 through 1442 removed outlier: 3.619A pdb=" N ASN D1435 " --> pdb=" O ASP D1431 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N LEU D1436 " --> pdb=" O PRO D1432 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N LYS D1437 " --> pdb=" O SER D1433 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N ALA D1440 " --> pdb=" O LEU D1436 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N LYS D1441 " --> pdb=" O LYS D1437 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N SER D1442 " --> pdb=" O LEU D1438 " (cutoff:3.500A) Processing helix chain 'D' and resid 1448 through 1458 removed outlier: 3.798A pdb=" N LEU D1455 " --> pdb=" O GLN D1451 " (cutoff:3.500A) removed outlier: 3.921A pdb=" N ARG D1457 " --> pdb=" O GLU D1453 " (cutoff:3.500A) removed outlier: 5.394A pdb=" N ARG D1458 " --> pdb=" O LEU D1454 " (cutoff:3.500A) Processing helix chain 'D' and resid 1462 through 1468 removed outlier: 3.829A pdb=" N GLN D1466 " --> pdb=" O ARG D1462 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N SER D1467 " --> pdb=" O LYS D1463 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N LEU D1468 " --> pdb=" O ASN D1464 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1462 through 1468' Processing helix chain 'D' and resid 1482 through 1503 removed outlier: 3.807A pdb=" N ILE D1492 " --> pdb=" O TYR D1488 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N MET D1495 " --> pdb=" O LEU D1491 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N PHE D1497 " --> pdb=" O SER D1493 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N GLU D1503 " --> pdb=" O ALA D1499 " (cutoff:3.500A) Processing helix chain 'D' and resid 1517 through 1526 removed outlier: 4.806A pdb=" N PHE D1521 " --> pdb=" O ASN D1517 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N GLU D1523 " --> pdb=" O ARG D1519 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N GLY D1526 " --> pdb=" O GLY D1522 " (cutoff:3.500A) Processing helix chain 'D' and resid 1560 through 1578 removed outlier: 3.970A pdb=" N PHE D1568 " --> pdb=" O LEU D1564 " (cutoff:3.500A) removed outlier: 3.872A pdb=" N ALA D1573 " --> pdb=" O GLU D1569 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N GLY D1576 " --> pdb=" O ALA D1572 " (cutoff:3.500A) removed outlier: 3.554A pdb=" N ARG D1578 " --> pdb=" O ALA D1574 " (cutoff:3.500A) Processing helix chain 'D' and resid 1587 through 1606 removed outlier: 3.918A pdb=" N ALA D1597 " --> pdb=" O GLU D1593 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N LYS D1603 " --> pdb=" O MET D1599 " (cutoff:3.500A) removed outlier: 4.864A pdb=" N ALA D1604 " --> pdb=" O LYS D1600 " (cutoff:3.500A) removed outlier: 4.444A pdb=" N ILE D1605 " --> pdb=" O PHE D1601 " (cutoff:3.500A) removed outlier: 4.820A pdb=" N GLU D1606 " --> pdb=" O SER D1602 " (cutoff:3.500A) Processing helix chain 'D' and resid 1613 through 1624 removed outlier: 3.546A pdb=" N ILE D1617 " --> pdb=" O GLU D1613 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N VAL D1618 " --> pdb=" O GLU D1614 " (cutoff:3.500A) Proline residue: D1619 - end of helix removed outlier: 4.235A pdb=" N LYS D1623 " --> pdb=" O PRO D1619 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N LEU D1624 " --> pdb=" O TYR D1620 " (cutoff:3.500A) Processing helix chain 'D' and resid 1629 through 1636 removed outlier: 3.719A pdb=" N LEU D1633 " --> pdb=" O LEU D1629 " (cutoff:3.500A) removed outlier: 3.846A pdb=" N HIS D1635 " --> pdb=" O ALA D1631 " (cutoff:3.500A) Processing helix chain 'D' and resid 1645 through 1659 removed outlier: 3.780A pdb=" N ILE D1651 " --> pdb=" O ASN D1647 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N ARG D1654 " --> pdb=" O ARG D1650 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N GLU D1657 " --> pdb=" O LYS D1653 " (cutoff:3.500A) Processing helix chain 'D' and resid 1699 through 1710 removed outlier: 4.186A pdb=" N GLU D1705 " --> pdb=" O ASN D1701 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N MET D1706 " --> pdb=" O GLU D1702 " (cutoff:3.500A) removed outlier: 4.472A pdb=" N LEU D1709 " --> pdb=" O GLU D1705 " (cutoff:3.500A) removed outlier: 4.603A pdb=" N ALA D1710 " --> pdb=" O MET D1706 " (cutoff:3.500A) Processing helix chain 'D' and resid 1725 through 1738 removed outlier: 3.781A pdb=" N LYS D1729 " --> pdb=" O SER D1725 " (cutoff:3.500A) removed outlier: 4.770A pdb=" N ALA D1730 " --> pdb=" O HIS D1726 " (cutoff:3.500A) removed outlier: 5.585A pdb=" N TYR D1731 " --> pdb=" O ASN D1727 " (cutoff:3.500A) removed outlier: 3.593A pdb=" N TYR D1732 " --> pdb=" O MET D1728 " (cutoff:3.500A) removed outlier: 4.557A pdb=" N ILE D1737 " --> pdb=" O LYS D1733 " (cutoff:3.500A) Processing helix chain 'D' and resid 1745 through 1751 removed outlier: 4.545A pdb=" N ILE D1749 " --> pdb=" O TYR D1745 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N ILE D1750 " --> pdb=" O LEU D1746 " (cutoff:3.500A) removed outlier: 5.371A pdb=" N HIS D1751 " --> pdb=" O GLN D1747 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1745 through 1751' Processing helix chain 'D' and resid 1752 through 1761 removed outlier: 3.682A pdb=" N ALA D1759 " --> pdb=" O ASN D1755 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N SER D1761 " --> pdb=" O GLU D1757 " (cutoff:3.500A) Processing helix chain 'D' and resid 1765 through 1775 removed outlier: 3.670A pdb=" N VAL D1770 " --> pdb=" O LYS D1766 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N PHE D1773 " --> pdb=" O CYS D1769 " (cutoff:3.500A) removed outlier: 4.140A pdb=" N THR D1774 " --> pdb=" O VAL D1770 " (cutoff:3.500A) removed outlier: 5.312A pdb=" N TYR D1775 " --> pdb=" O ASP D1771 " (cutoff:3.500A) Processing helix chain 'D' and resid 1776 through 1785 removed outlier: 4.328A pdb=" N HIS D1783 " --> pdb=" O TYR D1779 " (cutoff:3.500A) removed outlier: 4.220A pdb=" N VAL D1784 " --> pdb=" O ARG D1780 " (cutoff:3.500A) Processing helix chain 'D' and resid 1795 through 1818 removed outlier: 4.424A pdb=" N SER D1800 " --> pdb=" O PRO D1796 " (cutoff:3.500A) removed outlier: 3.533A pdb=" N VAL D1807 " --> pdb=" O LEU D1803 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N CYS D1810 " --> pdb=" O LEU D1806 " (cutoff:3.500A) removed outlier: 3.518A pdb=" N ASN D1812 " --> pdb=" O GLU D1808 " (cutoff:3.500A) removed outlier: 3.737A pdb=" N ASP D1813 " --> pdb=" O THR D1809 " (cutoff:3.500A) Processing helix chain 'D' and resid 1847 through 1857 removed outlier: 3.840A pdb=" N ALA D1853 " --> pdb=" O ASN D1849 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N HIS D1855 " --> pdb=" O LEU D1851 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N GLY D1857 " --> pdb=" O ALA D1853 " (cutoff:3.500A) Processing helix chain 'D' and resid 1859 through 1870 removed outlier: 3.500A pdb=" N ILE D1863 " --> pdb=" O SER D1859 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N SER D1865 " --> pdb=" O PHE D1861 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N SER D1868 " --> pdb=" O GLN D1864 " (cutoff:3.500A) Processing helix chain 'D' and resid 1875 through 1886 removed outlier: 4.176A pdb=" N LEU D1880 " --> pdb=" O LEU D1876 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N LEU D1883 " --> pdb=" O MET D1879 " (cutoff:3.500A) removed outlier: 4.471A pdb=" N ALA D1886 " --> pdb=" O VAL D1882 " (cutoff:3.500A) Processing helix chain 'D' and resid 1897 through 1910 removed outlier: 3.944A pdb=" N LEU D1901 " --> pdb=" O GLY D1897 " (cutoff:3.500A) removed outlier: 3.607A pdb=" N LYS D1907 " --> pdb=" O VAL D1903 " (cutoff:3.500A) removed outlier: 4.757A pdb=" N ARG D1908 " --> pdb=" O LYS D1904 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N LEU D1909 " --> pdb=" O LEU D1905 " (cutoff:3.500A) Proline residue: D1910 - end of helix Processing helix chain 'D' and resid 1921 through 1936 removed outlier: 3.839A pdb=" N LYS D1925 " --> pdb=" O SER D1921 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N PHE D1927 " --> pdb=" O SER D1923 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N LEU D1928 " --> pdb=" O PHE D1924 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N GLN D1931 " --> pdb=" O PHE D1927 " (cutoff:3.500A) Processing helix chain 'D' and resid 1940 through 1969 removed outlier: 3.807A pdb=" N ASP D1946 " --> pdb=" O ASP D1942 " (cutoff:3.500A) removed outlier: 3.739A pdb=" N LEU D1947 " --> pdb=" O PHE D1943 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N LYS D1948 " --> pdb=" O GLN D1944 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N ASP D1949 " --> pdb=" O ASN D1945 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N GLU D1952 " --> pdb=" O LYS D1948 " (cutoff:3.500A) removed outlier: 3.981A pdb=" N LYS D1953 " --> pdb=" O ASP D1949 " (cutoff:3.500A) removed outlier: 4.957A pdb=" N VAL D1955 " --> pdb=" O LEU D1951 " (cutoff:3.500A) Proline residue: D1956 - end of helix removed outlier: 3.545A pdb=" N ASN D1959 " --> pdb=" O VAL D1955 " (cutoff:3.500A) removed outlier: 3.796A pdb=" N VAL D1960 " --> pdb=" O PRO D1956 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N VAL D1961 " --> pdb=" O LEU D1957 " (cutoff:3.500A) Processing helix chain 'D' and resid 1971 through 1986 removed outlier: 4.736A pdb=" N THR D1975 " --> pdb=" O LEU D1971 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N ALA D1976 " --> pdb=" O ASN D1972 " (cutoff:3.500A) removed outlier: 3.684A pdb=" N GLN D1981 " --> pdb=" O MET D1977 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N MET D1982 " --> pdb=" O ASP D1978 " (cutoff:3.500A) removed outlier: 4.181A pdb=" N ILE D1984 " --> pdb=" O ALA D1980 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLN D1985 " --> pdb=" O GLN D1981 " (cutoff:3.500A) Processing helix chain 'D' and resid 1993 through 1998 removed outlier: 4.691A pdb=" N ILE D1997 " --> pdb=" O PRO D1993 " (cutoff:3.500A) Proline residue: D1998 - end of helix No H-bonds generated for 'chain 'D' and resid 1993 through 1998' Processing helix chain 'D' and resid 2001 through 2012 removed outlier: 3.556A pdb=" N LYS D2007 " --> pdb=" O LYS D2003 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N LYS D2009 " --> pdb=" O LEU D2005 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N ILE D2011 " --> pdb=" O LYS D2007 " (cutoff:3.500A) Processing helix chain 'D' and resid 2015 through 2022 removed outlier: 3.556A pdb=" N ILE D2019 " --> pdb=" O THR D2015 " (cutoff:3.500A) removed outlier: 3.641A pdb=" N LEU D2022 " --> pdb=" O ASP D2018 " (cutoff:3.500A) Processing helix chain 'D' and resid 2023 through 2032 removed outlier: 3.864A pdb=" N ILE D2030 " --> pdb=" O GLU D2026 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N LEU D2031 " --> pdb=" O ARG D2027 " (cutoff:3.500A) removed outlier: 4.847A pdb=" N THR D2032 " --> pdb=" O ASP D2028 " (cutoff:3.500A) Processing helix chain 'D' and resid 2034 through 2048 removed outlier: 3.657A pdb=" N ALA D2039 " --> pdb=" O ASP D2035 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N GLN D2040 " --> pdb=" O SER D2036 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N ASN D2046 " --> pdb=" O ALA D2042 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N ASN D2047 " --> pdb=" O ALA D2043 " (cutoff:3.500A) Processing helix chain 'D' and resid 1229 through 1234 removed outlier: 3.893A pdb=" N GLY D1234 " --> pdb=" O ASP D1229 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 1229 through 1234' Processing helix chain 'd' and resid 5 through 15 removed outlier: 4.381A pdb=" N LEU d 11 " --> pdb=" O PRO d 7 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N ASN d 12 " --> pdb=" O VAL d 8 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N ALA d 14 " --> pdb=" O LEU d 10 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N GLN d 15 " --> pdb=" O LEU d 11 " (cutoff:3.500A) Processing helix chain 'd' and resid 75 through 81 removed outlier: 4.172A pdb=" N LYS d 79 " --> pdb=" O PRO d 75 " (cutoff:3.500A) removed outlier: 5.087A pdb=" N ASN d 80 " --> pdb=" O ASP d 76 " (cutoff:3.500A) removed outlier: 4.764A pdb=" N ALA d 81 " --> pdb=" O LEU d 77 " (cutoff:3.500A) No H-bonds generated for 'chain 'd' and resid 75 through 81' Processing helix chain 'a' and resid 9 through 16 removed outlier: 4.005A pdb=" N ALA a 13 " --> pdb=" O SER a 9 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N ASN a 14 " --> pdb=" O SER a 10 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N LEU a 15 " --> pdb=" O ARG a 11 " (cutoff:3.500A) removed outlier: 3.760A pdb=" N ILE a 16 " --> pdb=" O LEU a 12 " (cutoff:3.500A) No H-bonds generated for 'chain 'a' and resid 9 through 16' Processing helix chain 'a' and resid 88 through 93 removed outlier: 3.670A pdb=" N ILE a 92 " --> pdb=" O ARG a 88 " (cutoff:3.500A) removed outlier: 5.929A pdb=" N LEU a 93 " --> pdb=" O GLY a 89 " (cutoff:3.500A) No H-bonds generated for 'chain 'a' and resid 88 through 93' Processing helix chain 'b' and resid 2 through 11 removed outlier: 4.693A pdb=" N PHE b 6 " --> pdb=" O LYS b 2 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N LYS b 8 " --> pdb=" O VAL b 4 " (cutoff:3.500A) removed outlier: 4.096A pdb=" N LYS b 9 " --> pdb=" O ASN b 5 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N LEU b 10 " --> pdb=" O PHE b 6 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N ARG b 11 " --> pdb=" O LEU b 7 " (cutoff:3.500A) Processing helix chain 'b' and resid 102 through 108 removed outlier: 4.027A pdb=" N LEU b 106 " --> pdb=" O ASN b 102 " (cutoff:3.500A) removed outlier: 3.619A pdb=" N VAL b 108 " --> pdb=" O ASP b 104 " (cutoff:3.500A) Processing helix chain 'c' and resid 20 through 29 removed outlier: 4.544A pdb=" N PHE c 24 " --> pdb=" O GLU c 20 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N GLU c 25 " --> pdb=" O LEU c 21 " (cutoff:3.500A) removed outlier: 4.045A pdb=" N LYS c 27 " --> pdb=" O GLU c 23 " (cutoff:3.500A) Processing helix chain 'c' and resid 30 through 41 removed outlier: 4.134A pdb=" N ILE c 34 " --> pdb=" O PRO c 30 " (cutoff:3.500A) removed outlier: 3.743A pdb=" N THR c 40 " --> pdb=" O ASP c 36 " (cutoff:3.500A) Processing helix chain 'c' and resid 97 through 102 removed outlier: 4.188A pdb=" N VAL c 101 " --> pdb=" O ARG c 97 " (cutoff:3.500A) removed outlier: 5.435A pdb=" N ILE c 102 " --> pdb=" O GLY c 98 " (cutoff:3.500A) No H-bonds generated for 'chain 'c' and resid 97 through 102' Processing helix chain 'e' and resid 12 through 24 removed outlier: 3.915A pdb=" N ILE e 17 " --> pdb=" O PRO e 13 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N PHE e 18 " --> pdb=" O ILE e 14 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ASN e 19 " --> pdb=" O ASN e 15 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N LEU e 21 " --> pdb=" O ILE e 17 " (cutoff:3.500A) Processing helix chain 'e' and resid 83 through 88 removed outlier: 3.705A pdb=" N ILE e 87 " --> pdb=" O LYS e 83 " (cutoff:3.500A) removed outlier: 6.065A pdb=" N THR e 88 " --> pdb=" O GLY e 84 " (cutoff:3.500A) No H-bonds generated for 'chain 'e' and resid 83 through 88' Processing helix chain 'f' and resid 14 through 23 removed outlier: 3.664A pdb=" N GLY f 21 " --> pdb=" O PRO f 17 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N VAL f 23 " --> pdb=" O LEU f 19 " (cutoff:3.500A) Processing helix chain 'f' and resid 74 through 79 removed outlier: 3.940A pdb=" N VAL f 78 " --> pdb=" O ARG f 74 " (cutoff:3.500A) removed outlier: 6.165A pdb=" N LEU f 79 " --> pdb=" O CYS f 75 " (cutoff:3.500A) No H-bonds generated for 'chain 'f' and resid 74 through 79' Processing helix chain 'g' and resid 64 through 69 removed outlier: 4.207A pdb=" N ILE g 68 " --> pdb=" O ARG g 64 " (cutoff:3.500A) removed outlier: 5.463A pdb=" N ILE g 69 " --> pdb=" O GLY g 65 " (cutoff:3.500A) No H-bonds generated for 'chain 'g' and resid 64 through 69' Processing helix chain 'o' and resid 4 through 11 removed outlier: 3.904A pdb=" N ILE o 9 " --> pdb=" O PRO o 5 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N ASP o 10 " --> pdb=" O SER o 6 " (cutoff:3.500A) Processing helix chain 'o' and resid 110 through 120 removed outlier: 3.934A pdb=" N LEU o 114 " --> pdb=" O ARG o 110 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N GLN o 115 " --> pdb=" O PHE o 111 " (cutoff:3.500A) removed outlier: 4.729A pdb=" N ARG o 116 " --> pdb=" O GLU o 112 " (cutoff:3.500A) removed outlier: 5.403A pdb=" N LEU o 117 " --> pdb=" O ASP o 113 " (cutoff:3.500A) removed outlier: 4.250A pdb=" N ARG o 118 " --> pdb=" O LEU o 114 " (cutoff:3.500A) removed outlier: 4.900A pdb=" N ARG o 119 " --> pdb=" O GLN o 115 " (cutoff:3.500A) removed outlier: 4.712A pdb=" N ALA o 120 " --> pdb=" O ARG o 116 " (cutoff:3.500A) No H-bonds generated for 'chain 'o' and resid 110 through 120' Processing helix chain 'o' and resid 132 through 137 removed outlier: 4.263A pdb=" N HIS o 136 " --> pdb=" O ASN o 132 " (cutoff:3.500A) removed outlier: 4.317A pdb=" N LEU o 137 " --> pdb=" O GLN o 133 " (cutoff:3.500A) No H-bonds generated for 'chain 'o' and resid 132 through 137' Processing helix chain 'o' and resid 139 through 149 Proline residue: o 149 - end of helix Processing helix chain 'p' and resid 40 through 54 removed outlier: 3.542A pdb=" N ARG p 45 " --> pdb=" O MET p 41 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N VAL p 46 " --> pdb=" O GLN p 42 " (cutoff:3.500A) removed outlier: 3.522A pdb=" N LEU p 50 " --> pdb=" O VAL p 46 " (cutoff:3.500A) removed outlier: 3.752A pdb=" N ALA p 53 " --> pdb=" O PHE p 49 " (cutoff:3.500A) removed outlier: 4.441A pdb=" N THR p 54 " --> pdb=" O LEU p 50 " (cutoff:3.500A) Processing helix chain 'p' and resid 78 through 90 removed outlier: 3.519A pdb=" N ALA p 82 " --> pdb=" O THR p 78 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N SER p 88 " --> pdb=" O LEU p 84 " (cutoff:3.500A) removed outlier: 3.699A pdb=" N LEU p 89 " --> pdb=" O ALA p 85 " (cutoff:3.500A) Processing helix chain 'h' and resid 11 through 16 removed outlier: 4.064A pdb=" N LEU h 15 " --> pdb=" O ARG h 11 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N ILE h 16 " --> pdb=" O LEU h 12 " (cutoff:3.500A) No H-bonds generated for 'chain 'h' and resid 11 through 16' Processing helix chain 'h' and resid 88 through 93 removed outlier: 3.783A pdb=" N ILE h 92 " --> pdb=" O ARG h 88 " (cutoff:3.500A) removed outlier: 6.041A pdb=" N LEU h 93 " --> pdb=" O GLY h 89 " (cutoff:3.500A) No H-bonds generated for 'chain 'h' and resid 88 through 93' Processing helix chain 'i' and resid 12 through 24 removed outlier: 3.507A pdb=" N ILE i 17 " --> pdb=" O PRO i 13 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N PHE i 18 " --> pdb=" O ILE i 14 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N GLN i 22 " --> pdb=" O PHE i 18 " (cutoff:3.500A) Processing helix chain 'i' and resid 83 through 88 removed outlier: 3.991A pdb=" N ILE i 87 " --> pdb=" O LYS i 83 " (cutoff:3.500A) removed outlier: 5.992A pdb=" N THR i 88 " --> pdb=" O GLY i 84 " (cutoff:3.500A) No H-bonds generated for 'chain 'i' and resid 83 through 88' Processing helix chain 'j' and resid 14 through 23 removed outlier: 3.520A pdb=" N PHE j 18 " --> pdb=" O ASN j 14 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N VAL j 23 " --> pdb=" O LEU j 19 " (cutoff:3.500A) Processing helix chain 'l' and resid 5 through 15 removed outlier: 3.545A pdb=" N LEU l 11 " --> pdb=" O PRO l 7 " (cutoff:3.500A) removed outlier: 4.033A pdb=" N GLN l 15 " --> pdb=" O LEU l 11 " (cutoff:3.500A) Processing helix chain 'l' and resid 65 through 70 removed outlier: 4.137A pdb=" N ILE l 69 " --> pdb=" O ARG l 65 " (cutoff:3.500A) removed outlier: 5.964A pdb=" N LYS l 70 " --> pdb=" O GLY l 66 " (cutoff:3.500A) No H-bonds generated for 'chain 'l' and resid 65 through 70' Processing helix chain 'l' and resid 75 through 82 removed outlier: 4.650A pdb=" N LYS l 79 " --> pdb=" O PRO l 75 " (cutoff:3.500A) removed outlier: 4.562A pdb=" N ASN l 80 " --> pdb=" O ASP l 76 " (cutoff:3.500A) removed outlier: 4.472A pdb=" N ALA l 81 " --> pdb=" O LEU l 77 " (cutoff:3.500A) Proline residue: l 82 - end of helix No H-bonds generated for 'chain 'l' and resid 75 through 82' Processing helix chain 'm' and resid 2 through 11 removed outlier: 3.939A pdb=" N PHE m 6 " --> pdb=" O LYS m 2 " (cutoff:3.500A) removed outlier: 5.302A pdb=" N ARG m 11 " --> pdb=" O LEU m 7 " (cutoff:3.500A) Processing helix chain 'm' and resid 88 through 93 removed outlier: 5.102A pdb=" N ARG m 93 " --> pdb=" O GLY m 89 " (cutoff:3.500A) Processing helix chain 'm' and resid 102 through 109 removed outlier: 4.054A pdb=" N LEU m 106 " --> pdb=" O ASN m 102 " (cutoff:3.500A) removed outlier: 5.760A pdb=" N ASP m 109 " --> pdb=" O SER m 105 " (cutoff:3.500A) Processing helix chain 'n' and resid 97 through 102 removed outlier: 4.133A pdb=" N VAL n 101 " --> pdb=" O ARG n 97 " (cutoff:3.500A) removed outlier: 5.511A pdb=" N ILE n 102 " --> pdb=" O GLY n 98 " (cutoff:3.500A) No H-bonds generated for 'chain 'n' and resid 97 through 102' Processing helix chain 'u' and resid 2 through 29 removed outlier: 4.180A pdb=" N THR u 6 " --> pdb=" O ASN u 2 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N ALA u 22 " --> pdb=" O GLU u 18 " (cutoff:3.500A) removed outlier: 3.667A pdb=" N GLU u 23 " --> pdb=" O ASN u 19 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ARG u 24 " --> pdb=" O ALA u 20 " (cutoff:3.500A) Proline residue: u 29 - end of helix Processing helix chain 'u' and resid 30 through 43 removed outlier: 3.714A pdb=" N TYR u 35 " --> pdb=" O LEU u 31 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N GLU u 38 " --> pdb=" O HIS u 34 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N LYS u 41 " --> pdb=" O GLN u 37 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N VAL u 42 " --> pdb=" O GLU u 38 " (cutoff:3.500A) Processing helix chain 'u' and resid 50 through 57 Processing helix chain 'u' and resid 68 through 97 Processing helix chain 'u' and resid 112 through 125 removed outlier: 3.540A pdb=" N LEU u 116 " --> pdb=" O PHE u 112 " (cutoff:3.500A) removed outlier: 3.734A pdb=" N LEU u 119 " --> pdb=" O LYS u 115 " (cutoff:3.500A) removed outlier: 4.151A pdb=" N ASN u 125 " --> pdb=" O LYS u 121 " (cutoff:3.500A) Processing helix chain 'u' and resid 134 through 145 removed outlier: 5.466A pdb=" N LYS u 138 " --> pdb=" O ILE u 134 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ASP u 139 " --> pdb=" O ASN u 135 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N LYS u 140 " --> pdb=" O SER u 136 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N PHE u 144 " --> pdb=" O LYS u 140 " (cutoff:3.500A) Processing helix chain 'u' and resid 165 through 170 removed outlier: 3.765A pdb=" N ILE u 169 " --> pdb=" O ASP u 165 " (cutoff:3.500A) Processing helix chain 'u' and resid 182 through 194 removed outlier: 3.611A pdb=" N LEU u 188 " --> pdb=" O GLN u 184 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N ASN u 191 " --> pdb=" O SER u 187 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N VAL u 192 " --> pdb=" O LEU u 188 " (cutoff:3.500A) removed outlier: 3.927A pdb=" N LYS u 194 " --> pdb=" O LEU u 190 " (cutoff:3.500A) Processing helix chain 'u' and resid 199 through 213 removed outlier: 3.927A pdb=" N LEU u 209 " --> pdb=" O ASP u 205 " (cutoff:3.500A) removed outlier: 4.422A pdb=" N PHE u 210 " --> pdb=" O ILE u 206 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N LEU u 211 " --> pdb=" O LEU u 207 " (cutoff:3.500A) removed outlier: 4.237A pdb=" N ASP u 212 " --> pdb=" O GLU u 208 " (cutoff:3.500A) removed outlier: 5.539A pdb=" N ASP u 213 " --> pdb=" O LEU u 209 " (cutoff:3.500A) Processing helix chain 'u' and resid 226 through 249 removed outlier: 3.503A pdb=" N LEU u 234 " --> pdb=" O MET u 230 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N LYS u 235 " --> pdb=" O ALA u 231 " (cutoff:3.500A) removed outlier: 3.667A pdb=" N VAL u 240 " --> pdb=" O LEU u 236 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N TYR u 248 " --> pdb=" O PHE u 244 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N ALA u 249 " --> pdb=" O PHE u 245 " (cutoff:3.500A) Processing helix chain 'u' and resid 252 through 271 removed outlier: 3.690A pdb=" N TYR u 268 " --> pdb=" O PHE u 264 " (cutoff:3.500A) removed outlier: 4.177A pdb=" N CYS u 269 " --> pdb=" O GLU u 265 " (cutoff:3.500A) removed outlier: 4.282A pdb=" N ARG u 270 " --> pdb=" O HIS u 266 " (cutoff:3.500A) Processing helix chain 'u' and resid 291 through 302 removed outlier: 3.712A pdb=" N HIS u 298 " --> pdb=" O VAL u 294 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N LEU u 299 " --> pdb=" O PHE u 295 " (cutoff:3.500A) removed outlier: 4.725A pdb=" N VAL u 300 " --> pdb=" O GLU u 296 " (cutoff:3.500A) removed outlier: 4.351A pdb=" N GLY u 301 " --> pdb=" O SER u 297 " (cutoff:3.500A) removed outlier: 5.506A pdb=" N LYS u 302 " --> pdb=" O HIS u 298 " (cutoff:3.500A) Processing helix chain 'u' and resid 303 through 311 Processing helix chain 'u' and resid 312 through 329 Processing helix chain 'u' and resid 330 through 345 removed outlier: 3.876A pdb=" N ALA u 344 " --> pdb=" O GLU u 340 " (cutoff:3.500A) Processing helix chain 'u' and resid 346 through 363 removed outlier: 3.510A pdb=" N TYR u 361 " --> pdb=" O LEU u 357 " (cutoff:3.500A) Processing helix chain 'u' and resid 408 through 416 removed outlier: 3.634A pdb=" N TYR u 412 " --> pdb=" O PRO u 408 " (cutoff:3.500A) removed outlier: 4.020A pdb=" N LYS u 413 " --> pdb=" O TYR u 409 " (cutoff:3.500A) Processing helix chain 'u' and resid 433 through 443 removed outlier: 4.367A pdb=" N PHE u 441 " --> pdb=" O PHE u 437 " (cutoff:3.500A) removed outlier: 4.869A pdb=" N ASN u 442 " --> pdb=" O GLU u 438 " (cutoff:3.500A) removed outlier: 4.296A pdb=" N GLU u 443 " --> pdb=" O ARG u 439 " (cutoff:3.500A) Processing helix chain 'u' and resid 444 through 454 removed outlier: 3.540A pdb=" N LEU u 453 " --> pdb=" O HIS u 449 " (cutoff:3.500A) Processing helix chain 'u' and resid 458 through 463 removed outlier: 3.856A pdb=" N LYS u 462 " --> pdb=" O SER u 458 " (cutoff:3.500A) removed outlier: 5.370A pdb=" N GLY u 463 " --> pdb=" O SER u 459 " (cutoff:3.500A) No H-bonds generated for 'chain 'u' and resid 458 through 463' Processing helix chain 'u' and resid 466 through 478 removed outlier: 3.742A pdb=" N ALA u 470 " --> pdb=" O LYS u 466 " (cutoff:3.500A) removed outlier: 3.995A pdb=" N GLN u 471 " --> pdb=" O ILE u 467 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N GLU u 472 " --> pdb=" O LYS u 468 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N ASN u 476 " --> pdb=" O GLU u 472 " (cutoff:3.500A) Processing helix chain 'u' and resid 517 through 528 removed outlier: 3.628A pdb=" N LYS u 526 " --> pdb=" O ASP u 522 " (cutoff:3.500A) Processing helix chain 'u' and resid 510 through 516 removed outlier: 5.206A pdb=" N GLY u 513 " --> pdb=" O ASP u 510 " (cutoff:3.500A) removed outlier: 4.034A pdb=" N ASN u 514 " --> pdb=" O GLU u 511 " (cutoff:3.500A) removed outlier: 4.564A pdb=" N VAL u 515 " --> pdb=" O GLU u 512 " (cutoff:3.500A) Processing helix chain 'u' and resid 214 through 220 removed outlier: 4.220A pdb=" N THR u 219 " --> pdb=" O GLU u 214 " (cutoff:3.500A) Proline residue: u 220 - end of helix No H-bonds generated for 'chain 'u' and resid 214 through 220' Processing helix chain 'w' and resid 89 through 106 removed outlier: 3.898A pdb=" N THR w 99 " --> pdb=" O VAL w 95 " (cutoff:3.500A) removed outlier: 3.575A pdb=" N ARG w 101 " --> pdb=" O LYS w 97 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N TYR w 102 " --> pdb=" O LEU w 98 " (cutoff:3.500A) removed outlier: 3.557A pdb=" N LYS w 105 " --> pdb=" O ARG w 101 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N ASP w 106 " --> pdb=" O TYR w 102 " (cutoff:3.500A) Processing helix chain 'w' and resid 107 through 118 removed outlier: 4.511A pdb=" N GLU w 111 " --> pdb=" O LYS w 107 " (cutoff:3.500A) removed outlier: 4.281A pdb=" N SER w 115 " --> pdb=" O GLU w 111 " (cutoff:3.500A) Processing helix chain 'w' and resid 129 through 149 removed outlier: 4.746A pdb=" N LYS w 133 " --> pdb=" O HIS w 129 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N THR w 134 " --> pdb=" O PRO w 130 " (cutoff:3.500A) removed outlier: 4.349A pdb=" N PHE w 148 " --> pdb=" O ARG w 144 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N THR w 149 " --> pdb=" O VAL w 145 " (cutoff:3.500A) Processing helix chain 'w' and resid 156 through 195 removed outlier: 3.592A pdb=" N LEU w 161 " --> pdb=" O LYS w 157 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N GLU w 166 " --> pdb=" O ASP w 162 " (cutoff:3.500A) removed outlier: 3.504A pdb=" N ILE w 195 " --> pdb=" O GLN w 191 " (cutoff:3.500A) Processing helix chain 'w' and resid 220 through 227 removed outlier: 3.908A pdb=" N MET w 224 " --> pdb=" O ASP w 220 " (cutoff:3.500A) removed outlier: 4.394A pdb=" N LEU w 226 " --> pdb=" O GLU w 222 " (cutoff:3.500A) removed outlier: 5.366A pdb=" N ARG w 227 " --> pdb=" O GLN w 223 " (cutoff:3.500A) Processing helix chain 'w' and resid 122 through 127 removed outlier: 3.611A pdb=" N MET w 125 " --> pdb=" O LEU w 122 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N ASN w 126 " --> pdb=" O ASN w 123 " (cutoff:3.500A) removed outlier: 5.050A pdb=" N SER w 127 " --> pdb=" O PHE w 124 " (cutoff:3.500A) No H-bonds generated for 'chain 'w' and resid 122 through 127' Processing helix chain 'v' and resid 18 through 36 removed outlier: 3.536A pdb=" N LYS v 28 " --> pdb=" O LEU v 24 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N GLU v 31 " --> pdb=" O ARG v 27 " (cutoff:3.500A) Processing helix chain 'v' and resid 77 through 87 removed outlier: 3.706A pdb=" N VAL v 81 " --> pdb=" O SER v 77 " (cutoff:3.500A) Processing helix chain 'v' and resid 88 through 105 removed outlier: 3.801A pdb=" N ILE v 99 " --> pdb=" O LEU v 95 " (cutoff:3.500A) removed outlier: 4.030A pdb=" N SER v 104 " --> pdb=" O SER v 100 " (cutoff:3.500A) removed outlier: 4.271A pdb=" N SER v 105 " --> pdb=" O ILE v 101 " (cutoff:3.500A) Processing helix chain 'v' and resid 234 through 240 removed outlier: 3.809A pdb=" N LYS v 238 " --> pdb=" O ASP v 234 " (cutoff:3.500A) removed outlier: 3.509A pdb=" N CYS v 240 " --> pdb=" O LEU v 236 " (cutoff:3.500A) Processing helix chain 'v' and resid 1 through 6 removed outlier: 3.603A pdb=" N GLY v 6 " --> pdb=" O TYR v 3 " (cutoff:3.500A) Processing helix chain 'v' and resid 163 through 168 removed outlier: 4.693A pdb=" N ASN v 166 " --> pdb=" O VAL v 163 " (cutoff:3.500A) removed outlier: 3.939A pdb=" N SER v 167 " --> pdb=" O LYS v 164 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N VAL v 168 " --> pdb=" O GLU v 165 " (cutoff:3.500A) No H-bonds generated for 'chain 'v' and resid 163 through 168' Processing helix chain '1' and resid 26 through 44 removed outlier: 3.699A pdb=" N GLU 1 31 " --> pdb=" O GLN 1 27 " (cutoff:3.500A) removed outlier: 3.608A pdb=" N LEU 1 33 " --> pdb=" O LEU 1 29 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA 1 37 " --> pdb=" O LEU 1 33 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N ALA 1 38 " --> pdb=" O GLN 1 34 " (cutoff:3.500A) removed outlier: 4.381A pdb=" N GLU 1 42 " --> pdb=" O ALA 1 38 " (cutoff:3.500A) removed outlier: 4.496A pdb=" N ASN 1 43 " --> pdb=" O ARG 1 39 " (cutoff:3.500A) Processing helix chain '1' and resid 46 through 56 removed outlier: 3.611A pdb=" N GLU 1 53 " --> pdb=" O GLN 1 49 " (cutoff:3.500A) removed outlier: 4.935A pdb=" N THR 1 56 " --> pdb=" O MET 1 52 " (cutoff:3.500A) Processing helix chain '1' and resid 57 through 62 removed outlier: 4.064A pdb=" N GLU 1 61 " --> pdb=" O VAL 1 57 " (cutoff:3.500A) removed outlier: 5.800A pdb=" N ASP 1 62 " --> pdb=" O GLN 1 58 " (cutoff:3.500A) No H-bonds generated for 'chain '1' and resid 57 through 62' Processing helix chain '1' and resid 63 through 71 removed outlier: 3.625A pdb=" N ARG 1 67 " --> pdb=" O SER 1 63 " (cutoff:3.500A) removed outlier: 4.973A pdb=" N ARG 1 68 " --> pdb=" O TYR 1 64 " (cutoff:3.500A) removed outlier: 5.626A pdb=" N PHE 1 69 " --> pdb=" O HIS 1 65 " (cutoff:3.500A) removed outlier: 4.654A pdb=" N ASP 1 70 " --> pdb=" O LYS 1 66 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N MET 1 71 " --> pdb=" O ARG 1 67 " (cutoff:3.500A) No H-bonds generated for 'chain '1' and resid 63 through 71' Processing helix chain '1' and resid 113 through 124 removed outlier: 3.575A pdb=" N SER 1 120 " --> pdb=" O VAL 1 116 " (cutoff:3.500A) removed outlier: 4.533A pdb=" N SER 1 122 " --> pdb=" O GLU 1 118 " (cutoff:3.500A) removed outlier: 4.655A pdb=" N ALA 1 123 " --> pdb=" O ASN 1 119 " (cutoff:3.500A) Processing helix chain '1' and resid 137 through 144 removed outlier: 3.897A pdb=" N HIS 1 141 " --> pdb=" O LYS 1 137 " (cutoff:3.500A) removed outlier: 4.291A pdb=" N LYS 1 142 " --> pdb=" O PRO 1 138 " (cutoff:3.500A) removed outlier: 3.608A pdb=" N TYR 1 143 " --> pdb=" O SER 1 139 " (cutoff:3.500A) removed outlier: 3.575A pdb=" N PHE 1 144 " --> pdb=" O ASP 1 140 " (cutoff:3.500A) No H-bonds generated for 'chain '1' and resid 137 through 144' Processing helix chain '1' and resid 145 through 150 removed outlier: 5.181A pdb=" N LYS 1 150 " --> pdb=" O ASP 1 146 " (cutoff:3.500A) Processing helix chain '1' and resid 157 through 175 removed outlier: 5.494A pdb=" N LYS 1 161 " --> pdb=" O ASN 1 157 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N SER 1 167 " --> pdb=" O GLU 1 163 " (cutoff:3.500A) Processing helix chain '1' and resid 177 through 192 removed outlier: 3.538A pdb=" N ARG 1 186 " --> pdb=" O ARG 1 182 " (cutoff:3.500A) Processing helix chain '1' and resid 196 through 210 removed outlier: 3.695A pdb=" N ARG 1 203 " --> pdb=" O MET 1 199 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N LEU 1 205 " --> pdb=" O PHE 1 201 " (cutoff:3.500A) Proline residue: 1 206 - end of helix removed outlier: 4.424A pdb=" N LEU 1 209 " --> pdb=" O LEU 1 205 " (cutoff:3.500A) removed outlier: 4.347A pdb=" N ASP 1 210 " --> pdb=" O PRO 1 206 " (cutoff:3.500A) Processing helix chain '1' and resid 214 through 233 removed outlier: 3.603A pdb=" N MET 1 221 " --> pdb=" O GLU 1 217 " (cutoff:3.500A) removed outlier: 3.688A pdb=" N TYR 1 230 " --> pdb=" O ASP 1 226 " (cutoff:3.500A) removed outlier: 4.247A pdb=" N GLN 1 231 " --> pdb=" O ARG 1 227 " (cutoff:3.500A) removed outlier: 3.740A pdb=" N LEU 1 232 " --> pdb=" O VAL 1 228 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N GLY 1 233 " --> pdb=" O LEU 1 229 " (cutoff:3.500A) Processing helix chain '1' and resid 236 through 253 removed outlier: 3.787A pdb=" N HIS 1 241 " --> pdb=" O LYS 1 237 " (cutoff:3.500A) removed outlier: 3.613A pdb=" N LYS 1 242 " --> pdb=" O PRO 1 238 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N VAL 1 246 " --> pdb=" O LYS 1 242 " (cutoff:3.500A) Proline residue: 1 249 - end of helix removed outlier: 4.589A pdb=" N ILE 1 252 " --> pdb=" O ALA 1 248 " (cutoff:3.500A) removed outlier: 4.091A pdb=" N ASP 1 253 " --> pdb=" O PRO 1 249 " (cutoff:3.500A) Processing helix chain '1' and resid 255 through 274 removed outlier: 3.603A pdb=" N ARG 1 259 " --> pdb=" O ASP 1 255 " (cutoff:3.500A) Processing helix chain '1' and resid 275 through 287 removed outlier: 3.522A pdb=" N LEU 1 279 " --> pdb=" O LEU 1 275 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N THR 1 280 " --> pdb=" O LYS 1 276 " (cutoff:3.500A) Proline residue: 1 284 - end of helix removed outlier: 3.816A pdb=" N GLU 1 287 " --> pdb=" O ARG 1 283 " (cutoff:3.500A) Processing helix chain '1' and resid 290 through 309 removed outlier: 3.581A pdb=" N ALA 1 302 " --> pdb=" O SER 1 298 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N VAL 1 303 " --> pdb=" O ARG 1 299 " (cutoff:3.500A) Processing helix chain '1' and resid 310 through 323 Proline residue: 1 315 - end of helix Processing helix chain '1' and resid 326 through 345 removed outlier: 3.725A pdb=" N ARG 1 330 " --> pdb=" O SER 1 326 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N HIS 1 331 " --> pdb=" O TRP 1 327 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N VAL 1 337 " --> pdb=" O GLY 1 333 " (cutoff:3.500A) Processing helix chain '1' and resid 347 through 352 removed outlier: 4.831A pdb=" N HIS 1 351 " --> pdb=" O GLY 1 347 " (cutoff:3.500A) Processing helix chain '1' and resid 353 through 365 removed outlier: 3.545A pdb=" N ILE 1 359 " --> pdb=" O LEU 1 355 " (cutoff:3.500A) removed outlier: 5.421A pdb=" N ASP 1 361 " --> pdb=" O SER 1 357 " (cutoff:3.500A) removed outlier: 5.519A pdb=" N CYS 1 362 " --> pdb=" O CYS 1 358 " (cutoff:3.500A) removed outlier: 4.009A pdb=" N LEU 1 363 " --> pdb=" O ILE 1 359 " (cutoff:3.500A) removed outlier: 5.081A pdb=" N MET 1 364 " --> pdb=" O LYS 1 360 " (cutoff:3.500A) removed outlier: 4.176A pdb=" N ASP 1 365 " --> pdb=" O ASP 1 361 " (cutoff:3.500A) Processing helix chain '1' and resid 367 through 386 removed outlier: 3.546A pdb=" N ARG 1 371 " --> pdb=" O HIS 1 367 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N TYR 1 386 " --> pdb=" O ALA 1 382 " (cutoff:3.500A) Processing helix chain '1' and resid 389 through 407 removed outlier: 4.714A pdb=" N VAL 1 395 " --> pdb=" O GLU 1 391 " (cutoff:3.500A) removed outlier: 5.106A pdb=" N VAL 1 396 " --> pdb=" O VAL 1 392 " (cutoff:3.500A) removed outlier: 4.003A pdb=" N LEU 1 397 " --> pdb=" O PHE 1 393 " (cutoff:3.500A) removed outlier: 4.722A pdb=" N GLU 1 398 " --> pdb=" O ASN 1 394 " (cutoff:3.500A) Proline residue: 1 399 - end of helix Processing helix chain '1' and resid 409 through 426 removed outlier: 3.520A pdb=" N MET 1 422 " --> pdb=" O ALA 1 418 " (cutoff:3.500A) Proline residue: 1 424 - end of helix Processing helix chain '1' and resid 428 through 446 removed outlier: 3.583A pdb=" N TYR 1 433 " --> pdb=" O GLU 1 429 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N GLU 1 437 " --> pdb=" O TYR 1 433 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N ARG 1 440 " --> pdb=" O THR 1 436 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N ILE 1 441 " --> pdb=" O GLU 1 437 " (cutoff:3.500A) Processing helix chain '1' and resid 450 through 468 removed outlier: 3.571A pdb=" N THR 1 456 " --> pdb=" O GLU 1 452 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N LEU 1 459 " --> pdb=" O LYS 1 455 " (cutoff:3.500A) removed outlier: 4.586A pdb=" N ALA 1 466 " --> pdb=" O GLN 1 462 " (cutoff:3.500A) removed outlier: 4.170A pdb=" N VAL 1 467 " --> pdb=" O LYS 1 463 " (cutoff:3.500A) removed outlier: 6.132A pdb=" N GLU 1 468 " --> pdb=" O CYS 1 464 " (cutoff:3.500A) Processing helix chain '1' and resid 471 through 478 Processing helix chain '1' and resid 479 through 487 removed outlier: 3.828A pdb=" N GLN 1 485 " --> pdb=" O PRO 1 481 " (cutoff:3.500A) Processing helix chain '1' and resid 489 through 496 removed outlier: 3.904A pdb=" N ASP 1 495 " --> pdb=" O ARG 1 491 " (cutoff:3.500A) removed outlier: 5.262A pdb=" N ARG 1 496 " --> pdb=" O VAL 1 492 " (cutoff:3.500A) Processing helix chain '1' and resid 497 through 513 removed outlier: 4.087A pdb=" N LYS 1 511 " --> pdb=" O VAL 1 507 " (cutoff:3.500A) removed outlier: 4.585A pdb=" N LYS 1 512 " --> pdb=" O THR 1 508 " (cutoff:3.500A) Processing helix chain '1' and resid 514 through 528 removed outlier: 3.626A pdb=" N ASP 1 520 " --> pdb=" O SER 1 516 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N LYS 1 521 " --> pdb=" O TYR 1 517 " (cutoff:3.500A) removed outlier: 4.919A pdb=" N THR 1 524 " --> pdb=" O ASP 1 520 " (cutoff:3.500A) Proline residue: 1 525 - end of helix removed outlier: 3.516A pdb=" N ASP 1 528 " --> pdb=" O THR 1 524 " (cutoff:3.500A) Processing helix chain '1' and resid 530 through 549 removed outlier: 3.512A pdb=" N ALA 1 537 " --> pdb=" O PHE 1 533 " (cutoff:3.500A) Processing helix chain '1' and resid 554 through 572 removed outlier: 3.660A pdb=" N GLN 1 572 " --> pdb=" O ALA 1 568 " (cutoff:3.500A) Processing helix chain '1' and resid 577 through 591 removed outlier: 3.984A pdb=" N ASP 1 591 " --> pdb=" O THR 1 587 " (cutoff:3.500A) Processing helix chain '1' and resid 592 through 599 Proline residue: 1 596 - end of helix removed outlier: 4.772A pdb=" N ALA 1 599 " --> pdb=" O LYS 1 595 " (cutoff:3.500A) No H-bonds generated for 'chain '1' and resid 592 through 599' Processing helix chain '1' and resid 600 through 612 removed outlier: 3.990A pdb=" N LYS 1 610 " --> pdb=" O LEU 1 606 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N HIS 1 611 " --> pdb=" O ASN 1 607 " (cutoff:3.500A) removed outlier: 5.909A pdb=" N LYS 1 612 " --> pdb=" O HIS 1 608 " (cutoff:3.500A) Processing helix chain '1' and resid 613 through 635 Proline residue: 1 629 - end of helix Processing helix chain '1' and resid 636 through 652 removed outlier: 3.667A pdb=" N LEU 1 651 " --> pdb=" O LEU 1 647 " (cutoff:3.500A) removed outlier: 5.330A pdb=" N GLY 1 652 " --> pdb=" O TYR 1 648 " (cutoff:3.500A) Processing helix chain '1' and resid 655 through 673 removed outlier: 3.754A pdb=" N SER 1 661 " --> pdb=" O GLU 1 657 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N VAL 1 672 " --> pdb=" O CYS 1 668 " (cutoff:3.500A) Processing helix chain '1' and resid 681 through 694 Proline residue: 1 687 - end of helix Proline residue: 1 691 - end of helix removed outlier: 4.510A pdb=" N ARG 1 694 " --> pdb=" O THR 1 690 " (cutoff:3.500A) Processing helix chain '1' and resid 697 through 715 removed outlier: 3.538A pdb=" N ASN 1 703 " --> pdb=" O LYS 1 699 " (cutoff:3.500A) removed outlier: 3.717A pdb=" N LYS 1 706 " --> pdb=" O VAL 1 702 " (cutoff:3.500A) Processing helix chain '1' and resid 720 through 736 removed outlier: 3.516A pdb=" N ARG 1 726 " --> pdb=" O LYS 1 722 " (cutoff:3.500A) removed outlier: 3.987A pdb=" N GLU 1 733 " --> pdb=" O PHE 1 729 " (cutoff:3.500A) removed outlier: 4.796A pdb=" N LYS 1 736 " --> pdb=" O LEU 1 732 " (cutoff:3.500A) Processing helix chain '1' and resid 739 through 758 removed outlier: 3.777A pdb=" N GLY 1 751 " --> pdb=" O ASN 1 747 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N ALA 1 756 " --> pdb=" O PHE 1 752 " (cutoff:3.500A) Processing helix chain '1' and resid 759 through 772 removed outlier: 3.824A pdb=" N ALA 1 765 " --> pdb=" O ASP 1 761 " (cutoff:3.500A) removed outlier: 4.573A pdb=" N LYS 1 771 " --> pdb=" O LEU 1 767 " (cutoff:3.500A) removed outlier: 5.035A pdb=" N VAL 1 772 " --> pdb=" O ASN 1 768 " (cutoff:3.500A) Processing helix chain '1' and resid 774 through 793 removed outlier: 3.561A pdb=" N GLY 1 786 " --> pdb=" O ALA 1 782 " (cutoff:3.500A) Processing helix chain '1' and resid 794 through 807 Proline residue: 1 799 - end of helix removed outlier: 4.114A pdb=" N THR 1 806 " --> pdb=" O MET 1 802 " (cutoff:3.500A) removed outlier: 4.520A pdb=" N THR 1 807 " --> pdb=" O ASN 1 803 " (cutoff:3.500A) Processing helix chain '1' and resid 809 through 828 removed outlier: 3.515A pdb=" N PHE 1 824 " --> pdb=" O MET 1 820 " (cutoff:3.500A) removed outlier: 4.798A pdb=" N GLY 1 828 " --> pdb=" O PHE 1 824 " (cutoff:3.500A) Processing helix chain '1' and resid 830 through 840 removed outlier: 4.708A pdb=" N TYR 1 834 " --> pdb=" O MET 1 830 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ILE 1 835 " --> pdb=" O SER 1 831 " (cutoff:3.500A) removed outlier: 5.502A pdb=" N TYR 1 836 " --> pdb=" O LYS 1 832 " (cutoff:3.500A) removed outlier: 6.090A pdb=" N PHE 1 837 " --> pdb=" O ASP 1 833 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N ILE 1 838 " --> pdb=" O TYR 1 834 " (cutoff:3.500A) Proline residue: 1 840 - end of helix Processing helix chain '1' and resid 841 through 848 removed outlier: 3.940A pdb=" N ASP 1 848 " --> pdb=" O ASP 1 844 " (cutoff:3.500A) Processing helix chain '1' and resid 850 through 869 removed outlier: 3.583A pdb=" N HIS 1 863 " --> pdb=" O ASN 1 859 " (cutoff:3.500A) Processing helix chain '1' and resid 873 through 885 Processing helix chain '1' and resid 892 through 911 removed outlier: 3.599A pdb=" N GLN 1 908 " --> pdb=" O GLU 1 904 " (cutoff:3.500A) Processing helix chain '1' and resid 912 through 925 removed outlier: 3.902A pdb=" N ASN 1 917 " --> pdb=" O GLY 1 913 " (cutoff:3.500A) removed outlier: 4.669A pdb=" N TYR 1 918 " --> pdb=" O LEU 1 914 " (cutoff:3.500A) removed outlier: 4.299A pdb=" N ILE 1 919 " --> pdb=" O PHE 1 915 " (cutoff:3.500A) removed outlier: 5.405A pdb=" N ALA 1 921 " --> pdb=" O ASN 1 917 " (cutoff:3.500A) removed outlier: 5.652A pdb=" N GLY 1 922 " --> pdb=" O TYR 1 918 " (cutoff:3.500A) removed outlier: 3.648A pdb=" N LEU 1 923 " --> pdb=" O ILE 1 919 " (cutoff:3.500A) removed outlier: 4.514A pdb=" N PHE 1 924 " --> pdb=" O TRP 1 920 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N HIS 1 925 " --> pdb=" O ALA 1 921 " (cutoff:3.500A) Processing helix chain '1' and resid 927 through 945 removed outlier: 3.681A pdb=" N VAL 1 937 " --> pdb=" O ALA 1 933 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N ASN 1 940 " --> pdb=" O ARG 1 936 " (cutoff:3.500A) Processing helix chain '1' and resid 964 through 969 removed outlier: 4.685A pdb=" N ASP 1 968 " --> pdb=" O ILE 1 964 " (cutoff:3.500A) removed outlier: 4.081A pdb=" N LEU 1 969 " --> pdb=" O GLU 1 965 " (cutoff:3.500A) No H-bonds generated for 'chain '1' and resid 964 through 969' Processing helix chain '1' and resid 947 through 952 removed outlier: 3.547A pdb=" N VAL 1 950 " --> pdb=" O ASP 1 947 " (cutoff:3.500A) Proline residue: 1 951 - end of helix No H-bonds generated for 'chain '1' and resid 947 through 952' Processing helix chain '2' and resid 133 through 142 removed outlier: 4.133A pdb=" N GLN 2 140 " --> pdb=" O GLN 2 136 " (cutoff:3.500A) removed outlier: 4.317A pdb=" N VAL 2 141 " --> pdb=" O LEU 2 137 " (cutoff:3.500A) Proline residue: 2 142 - end of helix Processing helix chain '2' and resid 143 through 148 removed outlier: 4.298A pdb=" N ILE 2 147 " --> pdb=" O TYR 2 143 " (cutoff:3.500A) removed outlier: 5.721A pdb=" N GLU 2 148 " --> pdb=" O PRO 2 144 " (cutoff:3.500A) No H-bonds generated for 'chain '2' and resid 143 through 148' Processing helix chain '2' and resid 149 through 154 removed outlier: 4.526A pdb=" N ASP 2 153 " --> pdb=" O TRP 2 149 " (cutoff:3.500A) removed outlier: 3.991A pdb=" N ALA 2 154 " --> pdb=" O TYR 2 150 " (cutoff:3.500A) No H-bonds generated for 'chain '2' and resid 149 through 154' Processing helix chain '2' and resid 156 through 166 removed outlier: 3.513A pdb=" N SER 2 162 " --> pdb=" O GLY 2 158 " (cutoff:3.500A) Processing helix chain '2' and resid 185 through 191 removed outlier: 4.707A pdb=" N LEU 2 189 " --> pdb=" O GLY 2 185 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N GLY 2 190 " --> pdb=" O ARG 2 186 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N LYS 2 191 " --> pdb=" O SER 2 187 " (cutoff:3.500A) No H-bonds generated for 'chain '2' and resid 185 through 191' Processing helix chain '2' and resid 197 through 204 removed outlier: 3.862A pdb=" N LYS 2 202 " --> pdb=" O ASP 2 198 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N THR 2 203 " --> pdb=" O ILE 2 199 " (cutoff:3.500A) removed outlier: 4.376A pdb=" N ASN 2 204 " --> pdb=" O ILE 2 200 " (cutoff:3.500A) Processing helix chain '2' and resid 205 through 210 removed outlier: 4.014A pdb=" N SER 2 210 " --> pdb=" O GLU 2 206 " (cutoff:3.500A) Processing helix chain '2' and resid 224 through 235 removed outlier: 3.611A pdb=" N ARG 2 232 " --> pdb=" O ALA 2 228 " (cutoff:3.500A) removed outlier: 4.046A pdb=" N VAL 2 233 " --> pdb=" O SER 2 229 " (cutoff:3.500A) Proline residue: 2 235 - end of helix Processing helix chain '2' and resid 243 through 252 removed outlier: 3.858A pdb=" N PHE 2 251 " --> pdb=" O LEU 2 247 " (cutoff:3.500A) Processing helix chain '2' and resid 275 through 289 removed outlier: 3.624A pdb=" N GLU 2 279 " --> pdb=" O ASN 2 275 " (cutoff:3.500A) removed outlier: 3.733A pdb=" N LYS 2 289 " --> pdb=" O MET 2 285 " (cutoff:3.500A) Processing helix chain '2' and resid 295 through 303 removed outlier: 3.510A pdb=" N ILE 2 301 " --> pdb=" O GLU 2 297 " (cutoff:3.500A) Processing helix chain '2' and resid 312 through 320 Processing helix chain '2' and resid 336 through 341 removed outlier: 4.037A pdb=" N LEU 2 340 " --> pdb=" O ASP 2 336 " (cutoff:3.500A) removed outlier: 5.714A pdb=" N LYS 2 341 " --> pdb=" O ILE 2 337 " (cutoff:3.500A) No H-bonds generated for 'chain '2' and resid 336 through 341' Processing helix chain '2' and resid 173 through 178 removed outlier: 3.902A pdb=" N GLN 2 177 " --> pdb=" O SER 2 174 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N SER 2 178 " --> pdb=" O HIS 2 175 " (cutoff:3.500A) Processing helix chain '3' and resid 300 through 305 removed outlier: 4.540A pdb=" N TYR 3 304 " --> pdb=" O ASP 3 300 " (cutoff:3.500A) removed outlier: 3.853A pdb=" N ASN 3 305 " --> pdb=" O LEU 3 301 " (cutoff:3.500A) No H-bonds generated for 'chain '3' and resid 300 through 305' Processing helix chain '3' and resid 318 through 324 removed outlier: 5.484A pdb=" N ASN 3 324 " --> pdb=" O ASP 3 320 " (cutoff:3.500A) Processing helix chain '3' and resid 1144 through 1154 removed outlier: 3.669A pdb=" N ILE 31150 " --> pdb=" O GLU 31146 " (cutoff:3.500A) Processing helix chain '3' and resid 1155 through 1162 removed outlier: 4.076A pdb=" N LEU 31159 " --> pdb=" O ASP 31155 " (cutoff:3.500A) removed outlier: 4.084A pdb=" N SER 31160 " --> pdb=" O PRO 31156 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLY 31162 " --> pdb=" O GLU 31158 " (cutoff:3.500A) Processing helix chain '3' and resid 1167 through 1177 removed outlier: 3.532A pdb=" N GLN 31174 " --> pdb=" O VAL 31170 " (cutoff:3.500A) Processing helix chain '3' and resid 1233 through 1250 removed outlier: 3.548A pdb=" N ALA 31250 " --> pdb=" O ILE 31246 " (cutoff:3.500A) Processing helix chain '3' and resid 1251 through 1265 removed outlier: 3.569A pdb=" N LYS 31262 " --> pdb=" O TYR 31258 " (cutoff:3.500A) Processing helix chain '3' and resid 1303 through 1310 Processing helix chain '3' and resid 1319 through 1330 removed outlier: 3.993A pdb=" N PHE 31326 " --> pdb=" O LEU 31322 " (cutoff:3.500A) removed outlier: 4.403A pdb=" N LEU 31327 " --> pdb=" O CYS 31323 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N ARG 31328 " --> pdb=" O GLU 31324 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N LEU 31329 " --> pdb=" O ASN 31325 " (cutoff:3.500A) removed outlier: 5.768A pdb=" N SER 31330 " --> pdb=" O PHE 31326 " (cutoff:3.500A) Processing helix chain '3' and resid 1331 through 1340 removed outlier: 3.563A pdb=" N LYS 31339 " --> pdb=" O GLU 31335 " (cutoff:3.500A) removed outlier: 5.004A pdb=" N ASN 31340 " --> pdb=" O PHE 31336 " (cutoff:3.500A) Processing helix chain '3' and resid 1345 through 1359 removed outlier: 4.060A pdb=" N VAL 31356 " --> pdb=" O THR 31352 " (cutoff:3.500A) removed outlier: 4.438A pdb=" N ARG 31357 " --> pdb=" O ILE 31353 " (cutoff:3.500A) Processing helix chain '4' and resid 21 through 33 removed outlier: 3.667A pdb=" N GLU 4 27 " --> pdb=" O GLU 4 23 " (cutoff:3.500A) removed outlier: 3.693A pdb=" N LEU 4 28 " --> pdb=" O GLN 4 24 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N PHE 4 29 " --> pdb=" O LEU 4 25 " (cutoff:3.500A) removed outlier: 3.893A pdb=" N GLN 4 31 " --> pdb=" O GLU 4 27 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N ILE 4 32 " --> pdb=" O LEU 4 28 " (cutoff:3.500A) Processing helix chain '4' and resid 59 through 70 Processing helix chain '4' and resid 120 through 130 removed outlier: 5.005A pdb=" N LYS 4 130 " --> pdb=" O LYS 4 126 " (cutoff:3.500A) Processing helix chain '4' and resid 157 through 168 removed outlier: 3.683A pdb=" N ALA 4 161 " --> pdb=" O ASP 4 157 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N ASP 4 162 " --> pdb=" O PHE 4 158 " (cutoff:3.500A) removed outlier: 3.634A pdb=" N ALA 4 164 " --> pdb=" O LYS 4 160 " (cutoff:3.500A) Processing helix chain '4' and resid 191 through 203 removed outlier: 3.551A pdb=" N ASP 4 196 " --> pdb=" O ALA 4 192 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N VAL 4 198 " --> pdb=" O TYR 4 194 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N ASP 4 199 " --> pdb=" O GLY 4 195 " (cutoff:3.500A) Processing helix chain '5' and resid 46 through 52 removed outlier: 3.705A pdb=" N PHE 5 51 " --> pdb=" O GLU 5 47 " (cutoff:3.500A) removed outlier: 6.133A pdb=" N GLY 5 52 " --> pdb=" O ASN 5 48 " (cutoff:3.500A) Processing helix chain '5' and resid 53 through 58 removed outlier: 4.246A pdb=" N ASN 5 57 " --> pdb=" O LYS 5 53 " (cutoff:3.500A) removed outlier: 5.362A pdb=" N CYS 5 58 " --> pdb=" O GLN 5 54 " (cutoff:3.500A) No H-bonds generated for 'chain '5' and resid 53 through 58' Processing helix chain '5' and resid 73 through 80 Processing helix chain '5' and resid 93 through 104 removed outlier: 3.619A pdb=" N ARG 5 99 " --> pdb=" O ASN 5 95 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N LYS 5 104 " --> pdb=" O HIS 5 100 " (cutoff:3.500A) Processing helix chain '6' and resid 1 through 18 removed outlier: 3.554A pdb=" N GLN 6 7 " --> pdb=" O GLU 6 3 " (cutoff:3.500A) removed outlier: 3.571A pdb=" N LYS 6 12 " --> pdb=" O LEU 6 8 " (cutoff:3.500A) removed outlier: 3.599A pdb=" N ILE 6 13 " --> pdb=" O LYS 6 9 " (cutoff:3.500A) Processing helix chain '6' and resid 27 through 46 Processing helix chain '6' and resid 47 through 58 Processing helix chain '6' and resid 61 through 74 removed outlier: 4.138A pdb=" N MET 6 73 " --> pdb=" O LEU 6 69 " (cutoff:3.500A) removed outlier: 4.703A pdb=" N SER 6 74 " --> pdb=" O LEU 6 70 " (cutoff:3.500A) Processing helix chain '6' and resid 76 through 84 removed outlier: 4.226A pdb=" N GLU 6 84 " --> pdb=" O TYR 6 80 " (cutoff:3.500A) Processing helix chain 'L' and resid 14 through 29 Processing helix chain 'L' and resid 32 through 41 removed outlier: 3.577A pdb=" N LEU L 39 " --> pdb=" O LYS L 35 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N LEU L 40 " --> pdb=" O VAL L 36 " (cutoff:3.500A) removed outlier: 5.018A pdb=" N GLN L 41 " --> pdb=" O ALA L 37 " (cutoff:3.500A) Processing helix chain 'L' and resid 44 through 55 Processing helix chain 'L' and resid 66 through 81 removed outlier: 3.565A pdb=" N ALA L 71 " --> pdb=" O LYS L 67 " (cutoff:3.500A) removed outlier: 3.598A pdb=" N ARG L 78 " --> pdb=" O LEU L 74 " (cutoff:3.500A) Proline residue: L 81 - end of helix Processing helix chain 'L' and resid 83 through 92 removed outlier: 3.599A pdb=" N MET L 90 " --> pdb=" O THR L 86 " (cutoff:3.500A) Processing helix chain 'L' and resid 94 through 111 removed outlier: 4.076A pdb=" N GLU L 109 " --> pdb=" O LEU L 105 " (cutoff:3.500A) removed outlier: 4.775A pdb=" N ASP L 110 " --> pdb=" O LEU L 106 " (cutoff:3.500A) removed outlier: 6.356A pdb=" N SER L 111 " --> pdb=" O GLU L 107 " (cutoff:3.500A) Processing helix chain 'L' and resid 166 through 195 removed outlier: 3.590A pdb=" N ARG L 181 " --> pdb=" O GLU L 177 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N GLN L 193 " --> pdb=" O ARG L 189 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N ALA L 194 " --> pdb=" O GLU L 190 " (cutoff:3.500A) Processing helix chain 'L' and resid 212 through 217 removed outlier: 4.177A pdb=" N ASP L 216 " --> pdb=" O ASP L 212 " (cutoff:3.500A) removed outlier: 5.755A pdb=" N ILE L 217 " --> pdb=" O TYR L 213 " (cutoff:3.500A) No H-bonds generated for 'chain 'L' and resid 212 through 217' Processing helix chain 'L' and resid 230 through 251 removed outlier: 6.903A pdb=" N ASP L 234 " --> pdb=" O THR L 230 " (cutoff:3.500A) removed outlier: 6.358A pdb=" N ARG L 235 " --> pdb=" O SER L 231 " (cutoff:3.500A) removed outlier: 3.890A pdb=" N GLN L 236 " --> pdb=" O THR L 232 " (cutoff:3.500A) Processing helix chain 'L' and resid 336 through 358 removed outlier: 4.337A pdb=" N HIS L 340 " --> pdb=" O GLU L 336 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N ILE L 352 " --> pdb=" O GLU L 348 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N GLN L 357 " --> pdb=" O LYS L 353 " (cutoff:3.500A) removed outlier: 5.296A pdb=" N LEU L 358 " --> pdb=" O SER L 354 " (cutoff:3.500A) Processing helix chain 'L' and resid 359 through 364 removed outlier: 3.989A pdb=" N ARG L 363 " --> pdb=" O LYS L 359 " (cutoff:3.500A) Processing helix chain 'L' and resid 373 through 381 removed outlier: 4.840A pdb=" N LYS L 377 " --> pdb=" O LEU L 373 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N ASN L 378 " --> pdb=" O PRO L 374 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N GLU L 381 " --> pdb=" O LYS L 377 " (cutoff:3.500A) Processing helix chain 'L' and resid 385 through 402 removed outlier: 3.544A pdb=" N GLU L 391 " --> pdb=" O ASP L 387 " (cutoff:3.500A) removed outlier: 4.545A pdb=" N ASP L 392 " --> pdb=" O GLU L 388 " (cutoff:3.500A) removed outlier: 3.549A pdb=" N ALA L 393 " --> pdb=" O LYS L 389 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N ILE L 395 " --> pdb=" O GLU L 391 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N GLU L 397 " --> pdb=" O ALA L 393 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N TYR L 398 " --> pdb=" O GLU L 394 " (cutoff:3.500A) removed outlier: 4.173A pdb=" N GLU L 399 " --> pdb=" O ILE L 395 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N LYS L 400 " --> pdb=" O ALA L 396 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLU L 401 " --> pdb=" O GLU L 397 " (cutoff:3.500A) Processing helix chain 'L' and resid 423 through 439 removed outlier: 3.529A pdb=" N LEU L 428 " --> pdb=" O PRO L 424 " (cutoff:3.500A) Proline residue: L 432 - end of helix removed outlier: 3.629A pdb=" N LEU L 438 " --> pdb=" O ALA L 434 " (cutoff:3.500A) Proline residue: L 439 - end of helix Processing helix chain 'L' and resid 442 through 469 Proline residue: L 447 - end of helix removed outlier: 3.885A pdb=" N ASP L 452 " --> pdb=" O GLN L 448 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N TYR L 455 " --> pdb=" O ILE L 451 " (cutoff:3.500A) removed outlier: 3.534A pdb=" N ASN L 456 " --> pdb=" O ASP L 452 " (cutoff:3.500A) removed outlier: 3.608A pdb=" N LEU L 458 " --> pdb=" O LYS L 454 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N ALA L 460 " --> pdb=" O ASN L 456 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N ALA L 462 " --> pdb=" O LEU L 458 " (cutoff:3.500A) removed outlier: 4.187A pdb=" N LYS L 465 " --> pdb=" O ASN L 461 " (cutoff:3.500A) Proline residue: L 467 - end of helix Processing helix chain 'L' and resid 482 through 513 removed outlier: 3.819A pdb=" N GLN L 486 " --> pdb=" O GLU L 482 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N HIS L 487 " --> pdb=" O SER L 483 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N ILE L 488 " --> pdb=" O ARG L 484 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N THR L 489 " --> pdb=" O MET L 485 " (cutoff:3.500A) removed outlier: 4.067A pdb=" N PHE L 499 " --> pdb=" O MET L 495 " (cutoff:3.500A) removed outlier: 3.975A pdb=" N LYS L 500 " --> pdb=" O LYS L 496 " (cutoff:3.500A) Proline residue: L 504 - end of helix removed outlier: 3.784A pdb=" N SER L 512 " --> pdb=" O VAL L 508 " (cutoff:3.500A) Processing helix chain 'L' and resid 514 through 587 removed outlier: 3.954A pdb=" N GLU L 518 " --> pdb=" O GLN L 514 " (cutoff:3.500A) Proline residue: L 532 - end of helix removed outlier: 3.508A pdb=" N GLN L 536 " --> pdb=" O PRO L 532 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N SER L 548 " --> pdb=" O LEU L 544 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N LEU L 549 " --> pdb=" O CYS L 545 " (cutoff:3.500A) Proline residue: L 550 - end of helix removed outlier: 3.979A pdb=" N ILE L 553 " --> pdb=" O LEU L 549 " (cutoff:3.500A) removed outlier: 4.647A pdb=" N GLN L 556 " --> pdb=" O LEU L 552 " (cutoff:3.500A) removed outlier: 3.871A pdb=" N ARG L 557 " --> pdb=" O ILE L 553 " (cutoff:3.500A) removed outlier: 3.560A pdb=" N ALA L 561 " --> pdb=" O ARG L 557 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N GLU L 569 " --> pdb=" O ALA L 565 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N ARG L 577 " --> pdb=" O LEU L 573 " (cutoff:3.500A) removed outlier: 4.516A pdb=" N LYS L 578 " --> pdb=" O GLU L 574 " (cutoff:3.500A) removed outlier: 4.384A pdb=" N ARG L 579 " --> pdb=" O GLY L 575 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N LEU L 580 " --> pdb=" O ARG L 576 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N MET L 583 " --> pdb=" O ARG L 579 " (cutoff:3.500A) removed outlier: 4.232A pdb=" N LEU L 584 " --> pdb=" O LEU L 580 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ASN L 585 " --> pdb=" O GLN L 581 " (cutoff:3.500A) Processing helix chain 's' and resid 24 through 35 removed outlier: 3.825A pdb=" N GLN s 30 " --> pdb=" O SER s 26 " (cutoff:3.500A) removed outlier: 3.695A pdb=" N THR s 35 " --> pdb=" O TYR s 31 " (cutoff:3.500A) Processing helix chain 's' and resid 46 through 51 removed outlier: 3.674A pdb=" N ILE s 50 " --> pdb=" O SER s 46 " (cutoff:3.500A) removed outlier: 5.542A pdb=" N VAL s 51 " --> pdb=" O ILE s 47 " (cutoff:3.500A) No H-bonds generated for 'chain 's' and resid 46 through 51' Processing helix chain 's' and resid 77 through 140 removed outlier: 3.511A pdb=" N LEU s 81 " --> pdb=" O ILE s 77 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N THR s 82 " --> pdb=" O PRO s 78 " (cutoff:3.500A) removed outlier: 3.724A pdb=" N LEU s 84 " --> pdb=" O LEU s 80 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N GLN s 85 " --> pdb=" O LEU s 81 " (cutoff:3.500A) removed outlier: 4.057A pdb=" N ALA s 90 " --> pdb=" O ASN s 86 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N LEU s 98 " --> pdb=" O GLU s 94 " (cutoff:3.500A) removed outlier: 4.197A pdb=" N LYS s 107 " --> pdb=" O ASP s 103 " (cutoff:3.500A) removed outlier: 3.750A pdb=" N LEU s 121 " --> pdb=" O ASP s 117 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N VAL s 122 " --> pdb=" O ALA s 118 " (cutoff:3.500A) removed outlier: 3.607A pdb=" N MET s 128 " --> pdb=" O ALA s 124 " (cutoff:3.500A) Proline residue: s 138 - end of helix Processing helix chain 't' and resid 24 through 35 removed outlier: 3.546A pdb=" N TYR t 31 " --> pdb=" O LEU t 27 " (cutoff:3.500A) Processing helix chain 't' and resid 84 through 142 removed outlier: 3.672A pdb=" N TRP t 88 " --> pdb=" O LEU t 84 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N MET t 92 " --> pdb=" O TRP t 88 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N GLU t 94 " --> pdb=" O ALA t 90 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N LYS t 97 " --> pdb=" O LEU t 93 " (cutoff:3.500A) removed outlier: 3.542A pdb=" N THR t 106 " --> pdb=" O LEU t 102 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N GLU t 115 " --> pdb=" O THR t 111 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N VAL t 122 " --> pdb=" O ALA t 118 " (cutoff:3.500A) removed outlier: 3.918A pdb=" N MET t 128 " --> pdb=" O ALA t 124 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N ASN t 131 " --> pdb=" O LEU t 127 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N GLU t 132 " --> pdb=" O MET t 128 " (cutoff:3.500A) Proline residue: t 138 - end of helix removed outlier: 4.148A pdb=" N SER t 141 " --> pdb=" O LEU t 137 " (cutoff:3.500A) removed outlier: 4.756A pdb=" N GLN t 142 " --> pdb=" O PRO t 138 " (cutoff:3.500A) Processing helix chain 't' and resid 77 through 83 removed outlier: 3.866A pdb=" N THR t 82 " --> pdb=" O ILE t 77 " (cutoff:3.500A) Processing helix chain 'q' and resid 24 through 35 removed outlier: 4.048A pdb=" N GLN q 30 " --> pdb=" O SER q 26 " (cutoff:3.500A) Processing helix chain 'q' and resid 76 through 142 removed outlier: 4.848A pdb=" N LEU q 80 " --> pdb=" O SER q 76 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N LEU q 81 " --> pdb=" O ILE q 77 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N ALA q 90 " --> pdb=" O ASN q 86 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ILE q 91 " --> pdb=" O GLU q 87 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N PHE q 96 " --> pdb=" O MET q 92 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N LYS q 97 " --> pdb=" O LEU q 93 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N ARG q 99 " --> pdb=" O ASN q 95 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N LEU q 105 " --> pdb=" O THR q 101 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N LYS q 107 " --> pdb=" O ASP q 103 " (cutoff:3.500A) removed outlier: 3.578A pdb=" N LYS q 108 " --> pdb=" O SER q 104 " (cutoff:3.500A) removed outlier: 3.767A pdb=" N VAL q 112 " --> pdb=" O LYS q 108 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N ALA q 124 " --> pdb=" O LYS q 120 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N MET q 128 " --> pdb=" O ALA q 124 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N ASP q 136 " --> pdb=" O GLU q 132 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N LEU q 137 " --> pdb=" O ASP q 133 " (cutoff:3.500A) Proline residue: q 138 - end of helix Processing helix chain 'r' and resid 24 through 35 removed outlier: 3.504A pdb=" N ASP r 34 " --> pdb=" O GLN r 30 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N THR r 35 " --> pdb=" O TYR r 31 " (cutoff:3.500A) Processing helix chain 'r' and resid 77 through 138 removed outlier: 3.626A pdb=" N THR r 82 " --> pdb=" O PRO r 78 " (cutoff:3.500A) removed outlier: 4.282A pdb=" N LEU r 98 " --> pdb=" O GLU r 94 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N ARG r 99 " --> pdb=" O ASN r 95 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N LEU r 102 " --> pdb=" O LEU r 98 " (cutoff:3.500A) removed outlier: 3.767A pdb=" N SER r 110 " --> pdb=" O THR r 106 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N VAL r 112 " --> pdb=" O LYS r 108 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N GLU r 115 " --> pdb=" O THR r 111 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N ASP r 117 " --> pdb=" O MET r 113 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N LEU r 121 " --> pdb=" O ASP r 117 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N ALA r 124 " --> pdb=" O LYS r 120 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N LEU r 127 " --> pdb=" O ALA r 123 " (cutoff:3.500A) removed outlier: 3.757A pdb=" N GLU r 129 " --> pdb=" O GLN r 125 " (cutoff:3.500A) Proline residue: r 138 - end of helix Processing helix chain 'K' and resid 13 through 32 removed outlier: 3.596A pdb=" N LYS K 17 " --> pdb=" O PRO K 13 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N GLN K 22 " --> pdb=" O ASN K 18 " (cutoff:3.500A) removed outlier: 4.023A pdb=" N LEU K 23 " --> pdb=" O GLU K 19 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N GLU K 27 " --> pdb=" O LEU K 23 " (cutoff:3.500A) removed outlier: 3.658A pdb=" N ASN K 30 " --> pdb=" O LYS K 26 " (cutoff:3.500A) Processing helix chain 'K' and resid 52 through 65 removed outlier: 4.129A pdb=" N THR K 56 " --> pdb=" O ASN K 52 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N TYR K 62 " --> pdb=" O THR K 58 " (cutoff:3.500A) Processing helix chain 'K' and resid 72 through 77 Proline residue: K 77 - end of helix Processing helix chain 'K' and resid 82 through 110 removed outlier: 4.085A pdb=" N LEU K 86 " --> pdb=" O ASP K 82 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N GLU K 90 " --> pdb=" O LEU K 86 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N TYR K 91 " --> pdb=" O PHE K 87 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N ARG K 92 " --> pdb=" O LEU K 88 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N ARG K 93 " --> pdb=" O GLU K 89 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N LYS K 94 " --> pdb=" O GLU K 90 " (cutoff:3.500A) removed outlier: 3.570A pdb=" N TYR K 95 " --> pdb=" O TYR K 91 " (cutoff:3.500A) Proline residue: K 96 - end of helix Proline residue: K 105 - end of helix removed outlier: 4.672A pdb=" N SER K 109 " --> pdb=" O PRO K 105 " (cutoff:3.500A) Processing helix chain 'K' and resid 112 through 175 removed outlier: 3.513A pdb=" N ILE K 116 " --> pdb=" O SER K 112 " (cutoff:3.500A) removed outlier: 4.010A pdb=" N VAL K 117 " --> pdb=" O LEU K 113 " (cutoff:3.500A) removed outlier: 3.503A pdb=" N ASP K 118 " --> pdb=" O LEU K 114 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N VAL K 127 " --> pdb=" O HIS K 123 " (cutoff:3.500A) removed outlier: 4.065A pdb=" N LEU K 128 " --> pdb=" O GLN K 124 " (cutoff:3.500A) Proline residue: K 133 - end of helix removed outlier: 3.554A pdb=" N VAL K 136 " --> pdb=" O LEU K 132 " (cutoff:3.500A) removed outlier: 3.929A pdb=" N ASP K 145 " --> pdb=" O ARG K 141 " (cutoff:3.500A) removed outlier: 3.846A pdb=" N ARG K 148 " --> pdb=" O ASN K 144 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N VAL K 154 " --> pdb=" O THR K 150 " (cutoff:3.500A) removed outlier: 4.026A pdb=" N ARG K 172 " --> pdb=" O LEU K 168 " (cutoff:3.500A) Processing helix chain 'N' and resid 15 through 35 removed outlier: 3.828A pdb=" N ILE N 19 " --> pdb=" O GLY N 15 " (cutoff:3.500A) Proline residue: N 21 - end of helix removed outlier: 3.522A pdb=" N GLN N 29 " --> pdb=" O ASP N 25 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N ASP N 32 " --> pdb=" O ILE N 28 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N LYS N 35 " --> pdb=" O ARG N 31 " (cutoff:3.500A) Processing helix chain 'N' and resid 41 through 68 removed outlier: 3.509A pdb=" N ASN N 46 " --> pdb=" O ALA N 42 " (cutoff:3.500A) removed outlier: 3.650A pdb=" N GLU N 47 " --> pdb=" O ALA N 43 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N LEU N 49 " --> pdb=" O SER N 45 " (cutoff:3.500A) removed outlier: 3.698A pdb=" N GLU N 51 " --> pdb=" O GLU N 47 " (cutoff:3.500A) removed outlier: 3.731A pdb=" N ILE N 52 " --> pdb=" O GLN N 48 " (cutoff:3.500A) Processing helix chain 'N' and resid 74 through 85 removed outlier: 3.661A pdb=" N LYS N 85 " --> pdb=" O LEU N 81 " (cutoff:3.500A) Processing helix chain 'N' and resid 88 through 98 removed outlier: 3.707A pdb=" N LYS N 94 " --> pdb=" O LEU N 90 " (cutoff:3.500A) removed outlier: 4.034A pdb=" N LYS N 97 " --> pdb=" O ALA N 93 " (cutoff:3.500A) removed outlier: 5.056A pdb=" N THR N 98 " --> pdb=" O LYS N 94 " (cutoff:3.500A) Processing helix chain 'N' and resid 105 through 111 removed outlier: 4.535A pdb=" N ILE N 109 " --> pdb=" O CYS N 105 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N GLN N 110 " --> pdb=" O LEU N 106 " (cutoff:3.500A) removed outlier: 6.269A pdb=" N LYS N 111 " --> pdb=" O ARG N 107 " (cutoff:3.500A) No H-bonds generated for 'chain 'N' and resid 105 through 111' Processing helix chain 'N' and resid 125 through 137 removed outlier: 3.613A pdb=" N GLU N 132 " --> pdb=" O GLN N 128 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N ALA N 133 " --> pdb=" O LEU N 129 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N LYS N 135 " --> pdb=" O GLU N 131 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N LYS N 136 " --> pdb=" O GLU N 132 " (cutoff:3.500A) Processing helix chain 'T' and resid 111 through 122 removed outlier: 4.700A pdb=" N LEU T 119 " --> pdb=" O TYR T 115 " (cutoff:3.500A) removed outlier: 5.295A pdb=" N SER T 120 " --> pdb=" O GLU T 116 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N GLN T 121 " --> pdb=" O LYS T 117 " (cutoff:3.500A) removed outlier: 4.951A pdb=" N ARG T 122 " --> pdb=" O LEU T 118 " (cutoff:3.500A) Processing helix chain 'T' and resid 396 through 401 removed outlier: 3.788A pdb=" N ARG T 400 " --> pdb=" O LEU T 396 " (cutoff:3.500A) removed outlier: 5.746A pdb=" N SER T 401 " --> pdb=" O GLU T 397 " (cutoff:3.500A) No H-bonds generated for 'chain 'T' and resid 396 through 401' Processing helix chain 'P' and resid 39 through 45 removed outlier: 4.374A pdb=" N PHE P 43 " --> pdb=" O LYS P 39 " (cutoff:3.500A) removed outlier: 3.875A pdb=" N ILE P 44 " --> pdb=" O LEU P 40 " (cutoff:3.500A) Proline residue: P 45 - end of helix No H-bonds generated for 'chain 'P' and resid 39 through 45' Processing helix chain 'P' and resid 46 through 51 removed outlier: 4.253A pdb=" N ASN P 50 " --> pdb=" O LYS P 46 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N PHE P 51 " --> pdb=" O ARG P 47 " (cutoff:3.500A) No H-bonds generated for 'chain 'P' and resid 46 through 51' Processing helix chain 'P' and resid 59 through 86 removed outlier: 3.763A pdb=" N CYS P 66 " --> pdb=" O GLU P 62 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N ASN P 84 " --> pdb=" O ALA P 80 " (cutoff:3.500A) removed outlier: 4.083A pdb=" N SER P 85 " --> pdb=" O LYS P 81 " (cutoff:3.500A) removed outlier: 5.306A pdb=" N ASN P 86 " --> pdb=" O LEU P 82 " (cutoff:3.500A) Processing helix chain 'P' and resid 87 through 92 removed outlier: 4.233A pdb=" N SER P 91 " --> pdb=" O ASN P 87 " (cutoff:3.500A) removed outlier: 4.934A pdb=" N ARG P 92 " --> pdb=" O ARG P 88 " (cutoff:3.500A) No H-bonds generated for 'chain 'P' and resid 87 through 92' Processing helix chain 'P' and resid 158 through 164 Processing helix chain 'P' and resid 198 through 247 removed outlier: 3.591A pdb=" N MET P 202 " --> pdb=" O ASN P 198 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N SER P 205 " --> pdb=" O PHE P 201 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N ALA P 207 " --> pdb=" O LYS P 203 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ALA P 229 " --> pdb=" O LEU P 225 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N GLU P 231 " --> pdb=" O ARG P 227 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N GLU P 233 " --> pdb=" O ALA P 229 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N LEU P 241 " --> pdb=" O LYS P 237 " (cutoff:3.500A) removed outlier: 3.502A pdb=" N LEU P 244 " --> pdb=" O LYS P 240 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N GLN P 246 " --> pdb=" O LYS P 242 " (cutoff:3.500A) Processing helix chain 'P' and resid 304 through 310 removed outlier: 4.794A pdb=" N PHE P 308 " --> pdb=" O ASP P 304 " (cutoff:3.500A) Processing helix chain 'P' and resid 329 through 335 removed outlier: 4.116A pdb=" N ASP P 333 " --> pdb=" O PHE P 329 " (cutoff:3.500A) removed outlier: 5.761A pdb=" N GLU P 335 " --> pdb=" O GLN P 331 " (cutoff:3.500A) Processing helix chain 'P' and resid 341 through 350 Processing helix chain 'P' and resid 313 through 318 removed outlier: 3.635A pdb=" N ALA P 316 " --> pdb=" O ASN P 313 " (cutoff:3.500A) removed outlier: 4.242A pdb=" N ARG P 318 " --> pdb=" O SER P 315 " (cutoff:3.500A) Processing helix chain 'Q' and resid 3 through 8 removed outlier: 3.861A pdb=" N GLU Q 7 " --> pdb=" O ASP Q 3 " (cutoff:3.500A) Proline residue: Q 8 - end of helix No H-bonds generated for 'chain 'Q' and resid 3 through 8' Processing helix chain 'Q' and resid 13 through 18 Processing helix chain 'Q' and resid 61 through 69 removed outlier: 3.663A pdb=" N ARG Q 68 " --> pdb=" O CYS Q 64 " (cutoff:3.500A) Processing helix chain 'Q' and resid 83 through 96 removed outlier: 4.405A pdb=" N HIS Q 89 " --> pdb=" O GLN Q 85 " (cutoff:3.500A) removed outlier: 4.970A pdb=" N GLU Q 96 " --> pdb=" O SER Q 92 " (cutoff:3.500A) Processing helix chain 'Q' and resid 106 through 116 removed outlier: 3.514A pdb=" N ARG Q 111 " --> pdb=" O ASP Q 107 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N SER Q 114 " --> pdb=" O LYS Q 110 " (cutoff:3.500A) removed outlier: 4.436A pdb=" N LEU Q 115 " --> pdb=" O ARG Q 111 " (cutoff:3.500A) removed outlier: 4.283A pdb=" N LYS Q 116 " --> pdb=" O PHE Q 112 " (cutoff:3.500A) Processing helix chain 'Q' and resid 122 through 129 removed outlier: 4.513A pdb=" N ASP Q 128 " --> pdb=" O GLN Q 124 " (cutoff:3.500A) Proline residue: Q 129 - end of helix Processing helix chain 'Q' and resid 130 through 146 removed outlier: 3.694A pdb=" N ASN Q 134 " --> pdb=" O SER Q 130 " (cutoff:3.500A) removed outlier: 3.920A pdb=" N ILE Q 135 " --> pdb=" O GLU Q 131 " (cutoff:3.500A) removed outlier: 3.573A pdb=" N LYS Q 140 " --> pdb=" O VAL Q 136 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ASN Q 141 " --> pdb=" O ASP Q 137 " (cutoff:3.500A) Processing helix chain 'Q' and resid 183 through 191 removed outlier: 4.205A pdb=" N LYS Q 189 " --> pdb=" O HIS Q 185 " (cutoff:3.500A) Proline residue: Q 191 - end of helix Processing helix chain 'Q' and resid 215 through 228 removed outlier: 3.598A pdb=" N ILE Q 219 " --> pdb=" O PRO Q 215 " (cutoff:3.500A) Processing helix chain 'Q' and resid 231 through 236 removed outlier: 3.834A pdb=" N GLY Q 235 " --> pdb=" O LYS Q 231 " (cutoff:3.500A) Processing helix chain 'Q' and resid 255 through 267 removed outlier: 4.474A pdb=" N GLY Q 259 " --> pdb=" O SER Q 255 " (cutoff:3.500A) removed outlier: 3.580A pdb=" N GLU Q 260 " --> pdb=" O SER Q 256 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N ARG Q 261 " --> pdb=" O GLU Q 257 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N ILE Q 266 " --> pdb=" O PHE Q 262 " (cutoff:3.500A) removed outlier: 5.627A pdb=" N SER Q 267 " --> pdb=" O VAL Q 263 " (cutoff:3.500A) Processing helix chain 'Q' and resid 298 through 303 removed outlier: 5.074A pdb=" N PHE Q 302 " --> pdb=" O SER Q 298 " (cutoff:3.500A) removed outlier: 3.900A pdb=" N GLY Q 303 " --> pdb=" O ALA Q 299 " (cutoff:3.500A) No H-bonds generated for 'chain 'Q' and resid 298 through 303' Processing helix chain 'Q' and resid 305 through 325 Processing helix chain 'R' and resid 62 through 68 removed outlier: 3.786A pdb=" N ASN R 66 " --> pdb=" O THR R 62 " (cutoff:3.500A) Processing helix chain 'R' and resid 73 through 79 Processing helix chain 'R' and resid 95 through 103 removed outlier: 3.573A pdb=" N LYS R 101 " --> pdb=" O GLU R 97 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N ALA R 103 " --> pdb=" O ILE R 99 " (cutoff:3.500A) Processing helix chain 'R' and resid 141 through 147 Processing helix chain 'R' and resid 152 through 166 removed outlier: 3.524A pdb=" N SER R 158 " --> pdb=" O ALA R 154 " (cutoff:3.500A) removed outlier: 3.893A pdb=" N VAL R 163 " --> pdb=" O ARG R 159 " (cutoff:3.500A) removed outlier: 3.991A pdb=" N ARG R 166 " --> pdb=" O PHE R 162 " (cutoff:3.500A) Processing helix chain 'R' and resid 188 through 200 removed outlier: 3.577A pdb=" N GLU R 197 " --> pdb=" O GLU R 193 " (cutoff:3.500A) Processing helix chain 'R' and resid 231 through 261 removed outlier: 3.558A pdb=" N GLN R 235 " --> pdb=" O ASP R 231 " (cutoff:3.500A) removed outlier: 3.599A pdb=" N HIS R 252 " --> pdb=" O ASN R 248 " (cutoff:3.500A) removed outlier: 3.763A pdb=" N ILE R 254 " --> pdb=" O MET R 250 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N ASN R 257 " --> pdb=" O LEU R 253 " (cutoff:3.500A) Processing helix chain 'S' and resid 9 through 16 removed outlier: 4.620A pdb=" N SER S 13 " --> pdb=" O LEU S 9 " (cutoff:3.500A) removed outlier: 4.505A pdb=" N LYS S 16 " --> pdb=" O ARG S 12 " (cutoff:3.500A) Processing helix chain 'S' and resid 125 through 130 removed outlier: 3.723A pdb=" N LYS S 129 " --> pdb=" O ARG S 125 " (cutoff:3.500A) removed outlier: 4.292A pdb=" N GLY S 130 " --> pdb=" O SER S 126 " (cutoff:3.500A) No H-bonds generated for 'chain 'S' and resid 125 through 130' Processing helix chain 'S' and resid 163 through 174 removed outlier: 3.712A pdb=" N GLN S 167 " --> pdb=" O SER S 163 " (cutoff:3.500A) Processing helix chain 'Y' and resid 36 through 44 removed outlier: 4.565A pdb=" N ASN Y 44 " --> pdb=" O LEU Y 40 " (cutoff:3.500A) Processing helix chain 'Y' and resid 60 through 69 removed outlier: 3.593A pdb=" N MET Y 67 " --> pdb=" O ASN Y 63 " (cutoff:3.500A) removed outlier: 3.740A pdb=" N LEU Y 68 " --> pdb=" O TYR Y 64 " (cutoff:3.500A) Processing helix chain 'Y' and resid 191 through 196 removed outlier: 4.240A pdb=" N ASN Y 195 " --> pdb=" O PHE Y 191 " (cutoff:3.500A) removed outlier: 6.401A pdb=" N ASP Y 196 " --> pdb=" O GLU Y 192 " (cutoff:3.500A) No H-bonds generated for 'chain 'Y' and resid 191 through 196' Processing helix chain 'X' and resid 2 through 15 Processing helix chain 'X' and resid 43 through 53 removed outlier: 3.514A pdb=" N THR X 49 " --> pdb=" O GLY X 45 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N VAL X 50 " --> pdb=" O ASP X 46 " (cutoff:3.500A) removed outlier: 4.510A pdb=" N GLU X 53 " --> pdb=" O THR X 49 " (cutoff:3.500A) Processing helix chain 'X' and resid 81 through 91 removed outlier: 4.154A pdb=" N THR X 85 " --> pdb=" O ASP X 81 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N ILE X 86 " --> pdb=" O GLN X 82 " (cutoff:3.500A) Processing helix chain 'X' and resid 112 through 128 removed outlier: 4.386A pdb=" N GLN X 116 " --> pdb=" O LYS X 112 " (cutoff:3.500A) removed outlier: 5.478A pdb=" N LYS X 117 " --> pdb=" O ARG X 113 " (cutoff:3.500A) removed outlier: 6.079A pdb=" N TYR X 118 " --> pdb=" O SER X 114 " (cutoff:3.500A) removed outlier: 3.634A pdb=" N GLU X 120 " --> pdb=" O GLN X 116 " (cutoff:3.500A) removed outlier: 4.523A pdb=" N GLU X 125 " --> pdb=" O ALA X 121 " (cutoff:3.500A) removed outlier: 4.127A pdb=" N ARG X 128 " --> pdb=" O GLU X 124 " (cutoff:3.500A) Processing helix chain 'Z' and resid 145 through 165 removed outlier: 3.619A pdb=" N ASN Z 161 " --> pdb=" O GLN Z 157 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N MET Z 164 " --> pdb=" O LYS Z 160 " (cutoff:3.500A) removed outlier: 5.843A pdb=" N GLY Z 165 " --> pdb=" O ASN Z 161 " (cutoff:3.500A) Processing helix chain 'Z' and resid 166 through 171 Processing helix chain 'Z' and resid 173 through 192 removed outlier: 4.229A pdb=" N HIS Z 177 " --> pdb=" O ASN Z 173 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N LYS Z 181 " --> pdb=" O HIS Z 177 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N ASN Z 182 " --> pdb=" O ASP Z 178 " (cutoff:3.500A) removed outlier: 3.667A pdb=" N SER Z 186 " --> pdb=" O ASN Z 182 " (cutoff:3.500A) removed outlier: 4.586A pdb=" N LEU Z 188 " --> pdb=" O THR Z 184 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N THR Z 189 " --> pdb=" O ALA Z 185 " (cutoff:3.500A) removed outlier: 3.634A pdb=" N ILE Z 190 " --> pdb=" O SER Z 186 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N GLU Z 191 " --> pdb=" O SER Z 187 " (cutoff:3.500A) removed outlier: 3.620A pdb=" N ASP Z 192 " --> pdb=" O LEU Z 188 " (cutoff:3.500A) Processing helix chain 'Z' and resid 193 through 199 removed outlier: 4.955A pdb=" N PHE Z 197 " --> pdb=" O PRO Z 193 " (cutoff:3.500A) removed outlier: 3.847A pdb=" N THR Z 198 " --> pdb=" O ALA Z 194 " (cutoff:3.500A) Processing helix chain 'Z' and resid 240 through 262 removed outlier: 3.603A pdb=" N LYS Z 248 " --> pdb=" O LYS Z 244 " (cutoff:3.500A) removed outlier: 3.767A pdb=" N VAL Z 257 " --> pdb=" O ASN Z 253 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N TYR Z 260 " --> pdb=" O LYS Z 256 " (cutoff:3.500A) Processing helix chain 'W' and resid 52 through 63 removed outlier: 3.792A pdb=" N LYS W 61 " --> pdb=" O LYS W 57 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N THR W 62 " --> pdb=" O ARG W 58 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N ARG W 63 " --> pdb=" O ARG W 59 " (cutoff:3.500A) Processing helix chain 'V' and resid 8 through 32 removed outlier: 3.728A pdb=" N LYS V 12 " --> pdb=" O ASP V 8 " (cutoff:3.500A) Proline residue: V 27 - end of helix Processing helix chain 'V' and resid 36 through 48 removed outlier: 3.637A pdb=" N LEU V 44 " --> pdb=" O SER V 40 " (cutoff:3.500A) removed outlier: 3.553A pdb=" N GLN V 46 " --> pdb=" O ARG V 42 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N VAL V 47 " --> pdb=" O ASP V 43 " (cutoff:3.500A) removed outlier: 4.916A pdb=" N ASN V 48 " --> pdb=" O LEU V 44 " (cutoff:3.500A) Processing helix chain 'V' and resid 52 through 67 removed outlier: 3.570A pdb=" N CYS V 57 " --> pdb=" O ARG V 53 " (cutoff:3.500A) removed outlier: 5.336A pdb=" N LYS V 67 " --> pdb=" O PHE V 63 " (cutoff:3.500A) Processing helix chain 'V' and resid 69 through 87 removed outlier: 6.539A pdb=" N ILE V 73 " --> pdb=" O ASN V 69 " (cutoff:3.500A) Proline residue: V 74 - end of helix removed outlier: 3.786A pdb=" N ALA V 78 " --> pdb=" O PRO V 74 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N ASP V 86 " --> pdb=" O LEU V 82 " (cutoff:3.500A) Processing helix chain 'V' and resid 88 through 109 removed outlier: 3.639A pdb=" N THR V 93 " --> pdb=" O ASP V 89 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N LEU V 98 " --> pdb=" O LEU V 94 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N MET V 99 " --> pdb=" O ALA V 95 " (cutoff:3.500A) removed outlier: 3.516A pdb=" N ASN V 107 " --> pdb=" O VAL V 103 " (cutoff:3.500A) Processing helix chain 'V' and resid 110 through 128 removed outlier: 3.580A pdb=" N SER V 122 " --> pdb=" O LEU V 118 " (cutoff:3.500A) Processing helix chain 'V' and resid 131 through 146 removed outlier: 4.311A pdb=" N ILE V 135 " --> pdb=" O HIS V 131 " (cutoff:3.500A) removed outlier: 3.992A pdb=" N LYS V 145 " --> pdb=" O LEU V 141 " (cutoff:3.500A) removed outlier: 4.363A pdb=" N ASN V 146 " --> pdb=" O LEU V 142 " (cutoff:3.500A) Processing helix chain 'V' and resid 147 through 158 removed outlier: 4.598A pdb=" N ALA V 153 " --> pdb=" O ARG V 149 " (cutoff:3.500A) removed outlier: 3.936A pdb=" N ILE V 157 " --> pdb=" O ALA V 153 " (cutoff:3.500A) Processing helix chain 'V' and resid 159 through 166 removed outlier: 3.689A pdb=" N ALA V 163 " --> pdb=" O GLY V 159 " (cutoff:3.500A) removed outlier: 3.575A pdb=" N LEU V 164 " --> pdb=" O TRP V 160 " (cutoff:3.500A) Processing helix chain 'V' and resid 167 through 183 removed outlier: 3.706A pdb=" N TYR V 179 " --> pdb=" O GLU V 175 " (cutoff:3.500A) removed outlier: 4.005A pdb=" N ILE V 180 " --> pdb=" O LYS V 176 " (cutoff:3.500A) removed outlier: 3.972A pdb=" N LEU V 181 " --> pdb=" O LEU V 177 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N GLN V 182 " --> pdb=" O ARG V 178 " (cutoff:3.500A) Processing helix chain 'V' and resid 188 through 204 removed outlier: 3.907A pdb=" N GLU V 192 " --> pdb=" O SER V 188 " (cutoff:3.500A) removed outlier: 4.111A pdb=" N SER V 193 " --> pdb=" O THR V 189 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N LEU V 197 " --> pdb=" O SER V 193 " (cutoff:3.500A) removed outlier: 3.845A pdb=" N PHE V 198 " --> pdb=" O LEU V 194 " (cutoff:3.500A) removed outlier: 3.784A pdb=" N ARG V 201 " --> pdb=" O LEU V 197 " (cutoff:3.500A) removed outlier: 3.928A pdb=" N GLN V 202 " --> pdb=" O PHE V 198 " (cutoff:3.500A) Processing helix chain 'V' and resid 205 through 210 removed outlier: 4.137A pdb=" N SER V 209 " --> pdb=" O TYR V 205 " (cutoff:3.500A) removed outlier: 6.494A pdb=" N GLN V 210 " --> pdb=" O LYS V 206 " (cutoff:3.500A) No H-bonds generated for 'chain 'V' and resid 205 through 210' Processing helix chain 'V' and resid 216 through 221 removed outlier: 6.366A pdb=" N THR V 221 " --> pdb=" O PRO V 217 " (cutoff:3.500A) Processing helix chain 'V' and resid 237 through 242 removed outlier: 4.046A pdb=" N ASN V 241 " --> pdb=" O LYS V 237 " (cutoff:3.500A) removed outlier: 5.662A pdb=" N PHE V 242 " --> pdb=" O GLU V 238 " (cutoff:3.500A) No H-bonds generated for 'chain 'V' and resid 237 through 242' Processing helix chain 'V' and resid 285 through 303 removed outlier: 3.562A pdb=" N LYS V 294 " --> pdb=" O GLU V 290 " (cutoff:3.500A) removed outlier: 3.770A pdb=" N SER V 302 " --> pdb=" O VAL V 298 " (cutoff:3.500A) removed outlier: 5.865A pdb=" N LEU V 303 " --> pdb=" O LEU V 299 " (cutoff:3.500A) Processing helix chain 'V' and resid 304 through 316 removed outlier: 3.509A pdb=" N LYS V 311 " --> pdb=" O GLU V 307 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N LYS V 316 " --> pdb=" O LEU V 312 " (cutoff:3.500A) Processing helix chain 'V' and resid 318 through 337 removed outlier: 3.614A pdb=" N LYS V 322 " --> pdb=" O ALA V 318 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N LYS V 323 " --> pdb=" O ASN V 319 " (cutoff:3.500A) removed outlier: 5.275A pdb=" N SER V 324 " --> pdb=" O ASN V 320 " (cutoff:3.500A) removed outlier: 3.599A pdb=" N ILE V 328 " --> pdb=" O SER V 324 " (cutoff:3.500A) removed outlier: 3.735A pdb=" N GLN V 335 " --> pdb=" O LYS V 331 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N GLU V 336 " --> pdb=" O SER V 332 " (cutoff:3.500A) removed outlier: 5.607A pdb=" N SER V 337 " --> pdb=" O SER V 333 " (cutoff:3.500A) Processing helix chain 'V' and resid 340 through 354 removed outlier: 3.945A pdb=" N SER V 344 " --> pdb=" O SER V 340 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N HIS V 354 " --> pdb=" O MET V 350 " (cutoff:3.500A) Processing helix chain 'V' and resid 355 through 371 removed outlier: 3.810A pdb=" N GLU V 366 " --> pdb=" O ASN V 362 " (cutoff:3.500A) Processing helix chain 'V' and resid 377 through 395 removed outlier: 3.824A pdb=" N ILE V 383 " --> pdb=" O ASP V 379 " (cutoff:3.500A) Processing helix chain 'V' and resid 398 through 404 removed outlier: 4.638A pdb=" N LEU V 402 " --> pdb=" O PRO V 398 " (cutoff:3.500A) removed outlier: 4.445A pdb=" N LYS V 403 " --> pdb=" O MET V 399 " (cutoff:3.500A) removed outlier: 5.089A pdb=" N ILE V 404 " --> pdb=" O ASP V 400 " (cutoff:3.500A) No H-bonds generated for 'chain 'V' and resid 398 through 404' Processing helix chain 'V' and resid 413 through 431 removed outlier: 3.509A pdb=" N PHE V 419 " --> pdb=" O GLN V 415 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N GLU V 426 " --> pdb=" O PHE V 422 " (cutoff:3.500A) Processing helix chain 'V' and resid 432 through 444 removed outlier: 3.735A pdb=" N LEU V 438 " --> pdb=" O ASP V 434 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N ARG V 439 " --> pdb=" O GLU V 435 " (cutoff:3.500A) removed outlier: 5.273A pdb=" N LYS V 444 " --> pdb=" O LEU V 440 " (cutoff:3.500A) Processing helix chain 'V' and resid 445 through 450 removed outlier: 3.702A pdb=" N PHE V 449 " --> pdb=" O LEU V 445 " (cutoff:3.500A) Proline residue: V 450 - end of helix No H-bonds generated for 'chain 'V' and resid 445 through 450' Processing helix chain 'V' and resid 454 through 469 removed outlier: 3.578A pdb=" N ALA V 467 " --> pdb=" O ASN V 463 " (cutoff:3.500A) Processing helix chain 'V' and resid 470 through 485 removed outlier: 4.214A pdb=" N THR V 474 " --> pdb=" O LEU V 470 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N GLU V 475 " --> pdb=" O GLY V 471 " (cutoff:3.500A) removed outlier: 5.677A pdb=" N ASP V 476 " --> pdb=" O LEU V 472 " (cutoff:3.500A) removed outlier: 5.318A pdb=" N MET V 477 " --> pdb=" O LEU V 473 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N SER V 479 " --> pdb=" O GLU V 475 " (cutoff:3.500A) removed outlier: 3.765A pdb=" N ARG V 480 " --> pdb=" O ASP V 476 " (cutoff:3.500A) removed outlier: 3.660A pdb=" N THR V 482 " --> pdb=" O ARG V 478 " (cutoff:3.500A) Processing helix chain 'M' and resid 86 through 106 removed outlier: 4.158A pdb=" N ARG M 103 " --> pdb=" O ALA M 99 " (cutoff:3.500A) Proline residue: M 104 - end of helix Processing helix chain 'M' and resid 119 through 125 removed outlier: 3.597A pdb=" N GLN M 124 " --> pdb=" O ARG M 120 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N ILE M 125 " --> pdb=" O LEU M 121 " (cutoff:3.500A) Processing helix chain 'M' and resid 144 through 150 Processing helix chain 'M' and resid 219 through 230 removed outlier: 3.569A pdb=" N LYS M 228 " --> pdb=" O ALA M 224 " (cutoff:3.500A) removed outlier: 3.950A pdb=" N LYS M 229 " --> pdb=" O LYS M 225 " (cutoff:3.500A) Processing helix chain 'M' and resid 247 through 256 removed outlier: 4.281A pdb=" N GLN M 251 " --> pdb=" O ALA M 247 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N LYS M 252 " --> pdb=" O SER M 248 " (cutoff:3.500A) removed outlier: 3.605A pdb=" N ASN M 255 " --> pdb=" O GLN M 251 " (cutoff:3.500A) removed outlier: 4.896A pdb=" N LYS M 256 " --> pdb=" O LYS M 252 " (cutoff:3.500A) Processing helix chain 'z' and resid 31 through 45 removed outlier: 3.787A pdb=" N CYS z 35 " --> pdb=" O CYS z 31 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N SER z 40 " --> pdb=" O LYS z 36 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N MET z 41 " --> pdb=" O ARG z 37 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N SER z 43 " --> pdb=" O LEU z 39 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N GLY z 45 " --> pdb=" O MET z 41 " (cutoff:3.500A) Processing helix chain 'z' and resid 121 through 132 removed outlier: 3.957A pdb=" N ILE z 125 " --> pdb=" O VAL z 121 " (cutoff:3.500A) removed outlier: 5.010A pdb=" N TYR z 126 " --> pdb=" O GLY z 122 " (cutoff:3.500A) removed outlier: 5.119A pdb=" N ILE z 127 " --> pdb=" O LYS z 123 " (cutoff:3.500A) removed outlier: 4.400A pdb=" N ILE z 131 " --> pdb=" O ILE z 127 " (cutoff:3.500A) removed outlier: 4.750A pdb=" N LEU z 132 " --> pdb=" O PHE z 128 " (cutoff:3.500A) Processing helix chain 'z' and resid 165 through 170 removed outlier: 5.632A pdb=" N GLY z 169 " --> pdb=" O GLU z 165 " (cutoff:3.500A) removed outlier: 4.659A pdb=" N SER z 170 " --> pdb=" O ASP z 166 " (cutoff:3.500A) No H-bonds generated for 'chain 'z' and resid 165 through 170' Processing helix chain 'y' and resid 9 through 14 Processing helix chain 'y' and resid 93 through 101 removed outlier: 3.865A pdb=" N TYR y 97 " --> pdb=" O THR y 93 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N ASN y 98 " --> pdb=" O GLU y 94 " (cutoff:3.500A) Proline residue: y 101 - end of helix Processing helix chain 'y' and resid 102 through 114 removed outlier: 4.143A pdb=" N GLY y 106 " --> pdb=" O VAL y 102 " (cutoff:3.500A) removed outlier: 4.162A pdb=" N ASP y 107 " --> pdb=" O GLU y 103 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N LEU y 110 " --> pdb=" O GLY y 106 " (cutoff:3.500A) Processing helix chain 'J' and resid 40 through 62 removed outlier: 3.793A pdb=" N TYR J 46 " --> pdb=" O GLU J 42 " (cutoff:3.500A) removed outlier: 3.535A pdb=" N ARG J 51 " --> pdb=" O GLN J 47 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N THR J 52 " --> pdb=" O ARG J 48 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N TYR J 57 " --> pdb=" O GLU J 53 " (cutoff:3.500A) removed outlier: 4.078A pdb=" N ARG J 60 " --> pdb=" O GLY J 56 " (cutoff:3.500A) Processing helix chain 'J' and resid 64 through 79 removed outlier: 3.531A pdb=" N TRP J 68 " --> pdb=" O ASP J 64 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N GLU J 75 " --> pdb=" O TYR J 71 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N HIS J 79 " --> pdb=" O GLU J 75 " (cutoff:3.500A) Processing helix chain 'J' and resid 80 through 96 removed outlier: 3.878A pdb=" N VAL J 94 " --> pdb=" O ARG J 90 " (cutoff:3.500A) removed outlier: 3.511A pdb=" N SER J 96 " --> pdb=" O LEU J 92 " (cutoff:3.500A) Processing helix chain 'J' and resid 98 through 113 removed outlier: 3.790A pdb=" N TRP J 102 " --> pdb=" O PHE J 98 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ARG J 104 " --> pdb=" O PRO J 100 " (cutoff:3.500A) removed outlier: 3.976A pdb=" N VAL J 112 " --> pdb=" O ALA J 108 " (cutoff:3.500A) Processing helix chain 'J' and resid 114 through 130 removed outlier: 3.829A pdb=" N ALA J 118 " --> pdb=" O CYS J 114 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N MET J 122 " --> pdb=" O ALA J 118 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N ASN J 123 " --> pdb=" O ARG J 119 " (cutoff:3.500A) removed outlier: 3.882A pdb=" N ARG J 124 " --> pdb=" O ASN J 120 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N ILE J 126 " --> pdb=" O MET J 122 " (cutoff:3.500A) removed outlier: 4.257A pdb=" N SER J 127 " --> pdb=" O ASN J 123 " (cutoff:3.500A) Proline residue: J 130 - end of helix Processing helix chain 'J' and resid 132 through 147 removed outlier: 3.837A pdb=" N TRP J 136 " --> pdb=" O VAL J 132 " (cutoff:3.500A) removed outlier: 3.677A pdb=" N TYR J 139 " --> pdb=" O LEU J 135 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N GLU J 143 " --> pdb=" O TYR J 139 " (cutoff:3.500A) Processing helix chain 'J' and resid 148 through 163 removed outlier: 4.111A pdb=" N VAL J 152 " --> pdb=" O ASN J 148 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N SER J 154 " --> pdb=" O GLU J 150 " (cutoff:3.500A) removed outlier: 4.029A pdb=" N THR J 157 " --> pdb=" O ARG J 153 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N LYS J 158 " --> pdb=" O SER J 154 " (cutoff:3.500A) removed outlier: 4.561A pdb=" N GLU J 163 " --> pdb=" O TRP J 159 " (cutoff:3.500A) Processing helix chain 'J' and resid 165 through 180 removed outlier: 3.900A pdb=" N SER J 171 " --> pdb=" O ASN J 167 " (cutoff:3.500A) removed outlier: 3.718A pdb=" N PHE J 172 " --> pdb=" O ALA J 168 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N VAL J 173 " --> pdb=" O TRP J 169 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N ILE J 177 " --> pdb=" O VAL J 173 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N ARG J 178 " --> pdb=" O ASP J 174 " (cutoff:3.500A) removed outlier: 4.013A pdb=" N LYS J 180 " --> pdb=" O GLU J 176 " (cutoff:3.500A) Processing helix chain 'J' and resid 182 through 197 removed outlier: 3.870A pdb=" N ARG J 186 " --> pdb=" O TRP J 182 " (cutoff:3.500A) removed outlier: 4.371A pdb=" N GLU J 187 " --> pdb=" O ASN J 183 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N LYS J 191 " --> pdb=" O GLU J 187 " (cutoff:3.500A) removed outlier: 3.648A pdb=" N VAL J 193 " --> pdb=" O TYR J 189 " (cutoff:3.500A) removed outlier: 4.214A pdb=" N MET J 194 " --> pdb=" O SER J 190 " (cutoff:3.500A) Proline residue: J 197 - end of helix Processing helix chain 'J' and resid 198 through 213 removed outlier: 3.638A pdb=" N PHE J 208 " --> pdb=" O LYS J 204 " (cutoff:3.500A) removed outlier: 4.483A pdb=" N ASN J 210 " --> pdb=" O VAL J 206 " (cutoff:3.500A) removed outlier: 4.322A pdb=" N ARG J 211 " --> pdb=" O ARG J 207 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N GLY J 213 " --> pdb=" O GLU J 209 " (cutoff:3.500A) Processing helix chain 'J' and resid 214 through 235 removed outlier: 4.701A pdb=" N VAL J 221 " --> pdb=" O PHE J 217 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N TYR J 222 " --> pdb=" O THR J 218 " (cutoff:3.500A) removed outlier: 3.599A pdb=" N LEU J 224 " --> pdb=" O SER J 220 " (cutoff:3.500A) removed outlier: 4.019A pdb=" N VAL J 229 " --> pdb=" O ALA J 225 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N ALA J 230 " --> pdb=" O ILE J 226 " (cutoff:3.500A) removed outlier: 3.748A pdb=" N ASN J 234 " --> pdb=" O ALA J 230 " (cutoff:3.500A) removed outlier: 3.886A pdb=" N LEU J 235 " --> pdb=" O ASN J 231 " (cutoff:3.500A) Processing helix chain 'J' and resid 243 through 258 removed outlier: 3.666A pdb=" N SER J 249 " --> pdb=" O LYS J 245 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N PHE J 250 " --> pdb=" O LEU J 246 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N TRP J 253 " --> pdb=" O SER J 249 " (cutoff:3.500A) removed outlier: 3.884A pdb=" N GLN J 257 " --> pdb=" O TRP J 253 " (cutoff:3.500A) Processing helix chain 'J' and resid 259 through 274 removed outlier: 3.657A pdb=" N SER J 263 " --> pdb=" O GLU J 259 " (cutoff:3.500A) removed outlier: 3.548A pdb=" N SER J 264 " --> pdb=" O TYR J 260 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N LEU J 266 " --> pdb=" O ARG J 262 " (cutoff:3.500A) removed outlier: 3.872A pdb=" N TYR J 267 " --> pdb=" O SER J 263 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N GLU J 272 " --> pdb=" O GLN J 268 " (cutoff:3.500A) Processing helix chain 'J' and resid 297 through 311 removed outlier: 4.205A pdb=" N ILE J 301 " --> pdb=" O ILE J 297 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N SER J 302 " --> pdb=" O GLU J 298 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N TYR J 303 " --> pdb=" O GLU J 299 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N LYS J 304 " --> pdb=" O THR J 300 " (cutoff:3.500A) removed outlier: 3.524A pdb=" N MET J 307 " --> pdb=" O TYR J 303 " (cutoff:3.500A) Processing helix chain 'J' and resid 315 through 333 removed outlier: 3.952A pdb=" N ASP J 328 " --> pdb=" O TRP J 324 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N LEU J 329 " --> pdb=" O LEU J 325 " (cutoff:3.500A) removed outlier: 3.558A pdb=" N SER J 331 " --> pdb=" O LEU J 327 " (cutoff:3.500A) Processing helix chain 'J' and resid 340 through 355 Proline residue: J 351 - end of helix removed outlier: 3.765A pdb=" N SER J 355 " --> pdb=" O PRO J 351 " (cutoff:3.500A) Processing helix chain 'J' and resid 358 through 377 removed outlier: 3.766A pdb=" N ARG J 362 " --> pdb=" O VAL J 358 " (cutoff:3.500A) removed outlier: 5.433A pdb=" N TYR J 363 " --> pdb=" O GLN J 359 " (cutoff:3.500A) removed outlier: 3.586A pdb=" N ILE J 364 " --> pdb=" O TRP J 360 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N LEU J 366 " --> pdb=" O ARG J 362 " (cutoff:3.500A) removed outlier: 3.989A pdb=" N TRP J 367 " --> pdb=" O TYR J 363 " (cutoff:3.500A) removed outlier: 4.299A pdb=" N TYR J 370 " --> pdb=" O LEU J 366 " (cutoff:3.500A) removed outlier: 5.930A pdb=" N ILE J 371 " --> pdb=" O TRP J 367 " (cutoff:3.500A) removed outlier: 4.734A pdb=" N CYS J 372 " --> pdb=" O MET J 368 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N GLU J 375 " --> pdb=" O ILE J 371 " (cutoff:3.500A) removed outlier: 4.707A pdb=" N LEU J 376 " --> pdb=" O CYS J 372 " (cutoff:3.500A) removed outlier: 5.045A pdb=" N GLU J 377 " --> pdb=" O TYR J 373 " (cutoff:3.500A) Processing helix chain 'J' and resid 379 through 390 removed outlier: 4.467A pdb=" N LEU J 383 " --> pdb=" O GLU J 379 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N LEU J 387 " --> pdb=" O LEU J 383 " (cutoff:3.500A) removed outlier: 4.376A pdb=" N GLN J 389 " --> pdb=" O GLU J 385 " (cutoff:3.500A) removed outlier: 5.440A pdb=" N ARG J 390 " --> pdb=" O GLU J 386 " (cutoff:3.500A) Processing helix chain 'J' and resid 393 through 406 Proline residue: J 397 - end of helix removed outlier: 3.845A pdb=" N PHE J 401 " --> pdb=" O PRO J 397 " (cutoff:3.500A) removed outlier: 3.792A pdb=" N THR J 402 " --> pdb=" O HIS J 398 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N SER J 404 " --> pdb=" O HIS J 400 " (cutoff:3.500A) removed outlier: 6.096A pdb=" N LYS J 405 " --> pdb=" O PHE J 401 " (cutoff:3.500A) removed outlier: 4.739A pdb=" N ILE J 406 " --> pdb=" O THR J 402 " (cutoff:3.500A) Processing helix chain 'J' and resid 414 through 425 removed outlier: 5.247A pdb=" N ASP J 418 " --> pdb=" O LEU J 414 " (cutoff:3.500A) Proline residue: J 421 - end of helix removed outlier: 4.139A pdb=" N ARG J 424 " --> pdb=" O VAL J 420 " (cutoff:3.500A) removed outlier: 3.941A pdb=" N LYS J 425 " --> pdb=" O PRO J 421 " (cutoff:3.500A) Processing helix chain 'J' and resid 429 through 444 removed outlier: 3.673A pdb=" N CYS J 434 " --> pdb=" O ALA J 430 " (cutoff:3.500A) Proline residue: J 435 - end of helix removed outlier: 3.624A pdb=" N PHE J 440 " --> pdb=" O LYS J 436 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N TYR J 443 " --> pdb=" O THR J 439 " (cutoff:3.500A) Processing helix chain 'J' and resid 453 through 466 removed outlier: 3.861A pdb=" N LYS J 458 " --> pdb=" O ASP J 454 " (cutoff:3.500A) removed outlier: 3.508A pdb=" N ILE J 459 " --> pdb=" O ARG J 455 " (cutoff:3.500A) removed outlier: 3.583A pdb=" N TYR J 460 " --> pdb=" O VAL J 456 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N GLU J 461 " --> pdb=" O ARG J 457 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N PHE J 463 " --> pdb=" O ILE J 459 " (cutoff:3.500A) removed outlier: 4.719A pdb=" N ILE J 464 " --> pdb=" O TYR J 460 " (cutoff:3.500A) removed outlier: 3.867A pdb=" N GLU J 465 " --> pdb=" O GLU J 461 " (cutoff:3.500A) removed outlier: 4.350A pdb=" N PHE J 466 " --> pdb=" O LYS J 462 " (cutoff:3.500A) Processing helix chain 'J' and resid 469 through 480 removed outlier: 5.778A pdb=" N ILE J 473 " --> pdb=" O SER J 469 " (cutoff:3.500A) removed outlier: 4.022A pdb=" N TYR J 477 " --> pdb=" O ILE J 473 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N GLU J 479 " --> pdb=" O SER J 475 " (cutoff:3.500A) removed outlier: 4.015A pdb=" N LEU J 480 " --> pdb=" O GLN J 476 " (cutoff:3.500A) Processing helix chain 'J' and resid 486 through 500 removed outlier: 4.285A pdb=" N VAL J 490 " --> pdb=" O ASP J 486 " (cutoff:3.500A) removed outlier: 3.568A pdb=" N ARG J 491 " --> pdb=" O TRP J 487 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N ILE J 493 " --> pdb=" O ARG J 489 " (cutoff:3.500A) removed outlier: 3.864A pdb=" N TYR J 494 " --> pdb=" O VAL J 490 " (cutoff:3.500A) removed outlier: 4.029A pdb=" N ALA J 497 " --> pdb=" O ILE J 493 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N LEU J 498 " --> pdb=" O TYR J 494 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N ASP J 499 " --> pdb=" O THR J 495 " (cutoff:3.500A) Processing helix chain 'J' and resid 502 through 517 removed outlier: 3.991A pdb=" N THR J 506 " --> pdb=" O SER J 502 " (cutoff:3.500A) removed outlier: 4.032A pdb=" N LYS J 507 " --> pdb=" O ASP J 503 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N GLU J 508 " --> pdb=" O PHE J 504 " (cutoff:3.500A) removed outlier: 4.007A pdb=" N LEU J 513 " --> pdb=" O ALA J 509 " (cutoff:3.500A) removed outlier: 3.966A pdb=" N LEU J 514 " --> pdb=" O LYS J 510 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N LYS J 516 " --> pdb=" O VAL J 512 " (cutoff:3.500A) removed outlier: 4.822A pdb=" N TYR J 517 " --> pdb=" O LEU J 513 " (cutoff:3.500A) Processing helix chain 'J' and resid 520 through 534 Processing helix chain 'J' and resid 538 through 551 Proline residue: J 545 - end of helix removed outlier: 3.645A pdb=" N TRP J 548 " --> pdb=" O SER J 544 " (cutoff:3.500A) Processing helix chain 'J' and resid 560 through 576 removed outlier: 3.642A pdb=" N LEU J 564 " --> pdb=" O THR J 560 " (cutoff:3.500A) removed outlier: 3.721A pdb=" N SER J 572 " --> pdb=" O ALA J 568 " (cutoff:3.500A) removed outlier: 3.719A pdb=" N ASN J 574 " --> pdb=" O LEU J 570 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N VAL J 575 " --> pdb=" O GLN J 571 " (cutoff:3.500A) Processing helix chain 'J' and resid 582 through 596 removed outlier: 3.966A pdb=" N GLU J 586 " --> pdb=" O GLU J 582 " (cutoff:3.500A) removed outlier: 3.668A pdb=" N ASN J 587 " --> pdb=" O ILE J 583 " (cutoff:3.500A) removed outlier: 3.747A pdb=" N LYS J 588 " --> pdb=" O THR J 584 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N GLU J 590 " --> pdb=" O GLU J 586 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N ALA J 591 " --> pdb=" O ASN J 587 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N LYS J 593 " --> pdb=" O LEU J 589 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N GLU J 596 " --> pdb=" O ARG J 592 " (cutoff:3.500A) Processing helix chain 'J' and resid 601 through 622 removed outlier: 3.520A pdb=" N GLY J 610 " --> pdb=" O ASP J 606 " (cutoff:3.500A) removed outlier: 3.963A pdb=" N ILE J 614 " --> pdb=" O GLY J 610 " (cutoff:3.500A) removed outlier: 3.954A pdb=" N TYR J 621 " --> pdb=" O ALA J 617 " (cutoff:3.500A) removed outlier: 5.481A pdb=" N GLU J 622 " --> pdb=" O LEU J 618 " (cutoff:3.500A) Processing helix chain 'J' and resid 625 through 641 removed outlier: 3.525A pdb=" N ASP J 630 " --> pdb=" O GLY J 626 " (cutoff:3.500A) removed outlier: 3.741A pdb=" N VAL J 634 " --> pdb=" O ASP J 630 " (cutoff:3.500A) removed outlier: 3.967A pdb=" N LYS J 635 " --> pdb=" O GLN J 631 " (cutoff:3.500A) Proline residue: J 639 - end of helix Processing helix chain 'I' and resid 191 through 206 removed outlier: 3.800A pdb=" N PHE I 195 " --> pdb=" O THR I 191 " (cutoff:3.500A) removed outlier: 4.036A pdb=" N ASN I 203 " --> pdb=" O GLU I 199 " (cutoff:3.500A) Processing helix chain 'I' and resid 209 through 223 removed outlier: 4.285A pdb=" N HIS I 213 " --> pdb=" O ILE I 209 " (cutoff:3.500A) Proline residue: I 223 - end of helix Processing helix chain 'I' and resid 225 through 239 removed outlier: 3.650A pdb=" N THR I 237 " --> pdb=" O THR I 233 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N ARG I 238 " --> pdb=" O LEU I 234 " (cutoff:3.500A) removed outlier: 4.242A pdb=" N ASP I 239 " --> pdb=" O ALA I 235 " (cutoff:3.500A) Processing helix chain 'I' and resid 241 through 256 removed outlier: 4.389A pdb=" N SER I 245 " --> pdb=" O ILE I 241 " (cutoff:3.500A) removed outlier: 4.047A pdb=" N VAL I 246 " --> pdb=" O THR I 242 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N TYR I 247 " --> pdb=" O ILE I 243 " (cutoff:3.500A) removed outlier: 4.058A pdb=" N GLU I 248 " --> pdb=" O LYS I 244 " (cutoff:3.500A) Proline residue: I 252 - end of helix removed outlier: 4.417A pdb=" N GLU I 255 " --> pdb=" O LEU I 251 " (cutoff:3.500A) removed outlier: 5.529A pdb=" N ASN I 256 " --> pdb=" O PRO I 252 " (cutoff:3.500A) Processing helix chain 'I' and resid 259 through 272 removed outlier: 4.256A pdb=" N SER I 263 " --> pdb=" O LYS I 259 " (cutoff:3.500A) Proline residue: I 267 - end of helix removed outlier: 3.813A pdb=" N LEU I 270 " --> pdb=" O LEU I 266 " (cutoff:3.500A) Processing helix chain 'I' and resid 274 through 287 removed outlier: 3.655A pdb=" N LEU I 278 " --> pdb=" O TYR I 274 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N GLU I 279 " --> pdb=" O LEU I 275 " (cutoff:3.500A) removed outlier: 3.793A pdb=" N LEU I 281 " --> pdb=" O SER I 277 " (cutoff:3.500A) removed outlier: 3.660A pdb=" N TYR I 287 " --> pdb=" O LEU I 283 " (cutoff:3.500A) Processing helix chain 'I' and resid 293 through 304 Proline residue: I 299 - end of helix removed outlier: 3.649A pdb=" N LEU I 303 " --> pdb=" O PRO I 299 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N PHE I 304 " --> pdb=" O ASP I 300 " (cutoff:3.500A) Processing helix chain 'I' and resid 306 through 321 removed outlier: 3.502A pdb=" N ILE I 314 " --> pdb=" O ALA I 310 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N SER I 315 " --> pdb=" O LYS I 311 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N ASP I 320 " --> pdb=" O ARG I 316 " (cutoff:3.500A) removed outlier: 3.839A pdb=" N SER I 321 " --> pdb=" O GLY I 317 " (cutoff:3.500A) Processing helix chain 'I' and resid 327 through 339 removed outlier: 6.113A pdb=" N GLN I 331 " --> pdb=" O LYS I 327 " (cutoff:3.500A) removed outlier: 4.576A pdb=" N GLN I 332 " --> pdb=" O LYS I 328 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N SER I 337 " --> pdb=" O THR I 333 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N ASP I 338 " --> pdb=" O LEU I 334 " (cutoff:3.500A) Processing helix chain 'I' and resid 342 through 356 removed outlier: 3.758A pdb=" N TYR I 346 " --> pdb=" O ILE I 342 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N PHE I 349 " --> pdb=" O PHE I 345 " (cutoff:3.500A) removed outlier: 3.804A pdb=" N GLN I 351 " --> pdb=" O LEU I 347 " (cutoff:3.500A) Processing helix chain 'I' and resid 361 through 368 removed outlier: 4.341A pdb=" N PHE I 368 " --> pdb=" O ASN I 364 " (cutoff:3.500A) Processing helix chain 'I' and resid 373 through 389 removed outlier: 3.533A pdb=" N ALA I 383 " --> pdb=" O GLN I 379 " (cutoff:3.500A) removed outlier: 4.249A pdb=" N GLU I 386 " --> pdb=" O MET I 382 " (cutoff:3.500A) removed outlier: 4.877A pdb=" N ILE I 389 " --> pdb=" O PHE I 385 " (cutoff:3.500A) Processing helix chain 'I' and resid 391 through 404 removed outlier: 3.540A pdb=" N VAL I 399 " --> pdb=" O TYR I 395 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N LEU I 401 " --> pdb=" O ASN I 397 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N ARG I 402 " --> pdb=" O ASP I 398 " (cutoff:3.500A) removed outlier: 4.387A pdb=" N ASP I 404 " --> pdb=" O ALA I 400 " (cutoff:3.500A) Processing helix chain 'I' and resid 407 through 421 removed outlier: 4.481A pdb=" N TRP I 411 " --> pdb=" O LEU I 407 " (cutoff:3.500A) removed outlier: 6.612A pdb=" N MET I 412 " --> pdb=" O VAL I 408 " (cutoff:3.500A) removed outlier: 3.775A pdb=" N ALA I 421 " --> pdb=" O LEU I 417 " (cutoff:3.500A) Processing helix chain 'I' and resid 428 through 442 removed outlier: 3.848A pdb=" N ILE I 432 " --> pdb=" O TYR I 428 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N LEU I 433 " --> pdb=" O SER I 429 " (cutoff:3.500A) removed outlier: 4.035A pdb=" N ASP I 436 " --> pdb=" O ILE I 432 " (cutoff:3.500A) Proline residue: I 437 - end of helix removed outlier: 3.512A pdb=" N GLY I 441 " --> pdb=" O PRO I 437 " (cutoff:3.500A) Processing helix chain 'I' and resid 445 through 464 removed outlier: 3.571A pdb=" N LEU I 449 " --> pdb=" O SER I 445 " (cutoff:3.500A) removed outlier: 3.577A pdb=" N ASP I 455 " --> pdb=" O CYS I 451 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N ARG I 459 " --> pdb=" O ASP I 455 " (cutoff:3.500A) Processing helix chain 'I' and resid 468 through 489 Proline residue: I 477 - end of helix removed outlier: 3.517A pdb=" N GLU I 482 " --> pdb=" O TYR I 478 " (cutoff:3.500A) Processing helix chain 'I' and resid 492 through 506 removed outlier: 4.425A pdb=" N LEU I 496 " --> pdb=" O ALA I 492 " (cutoff:3.500A) removed outlier: 3.523A pdb=" N GLU I 502 " --> pdb=" O LYS I 498 " (cutoff:3.500A) Processing helix chain 'I' and resid 511 through 530 Proline residue: I 515 - end of helix Proline residue: I 518 - end of helix removed outlier: 3.764A pdb=" N GLU I 523 " --> pdb=" O GLU I 519 " (cutoff:3.500A) removed outlier: 3.560A pdb=" N TYR I 525 " --> pdb=" O LEU I 521 " (cutoff:3.500A) removed outlier: 5.964A pdb=" N ARG I 530 " --> pdb=" O LYS I 526 " (cutoff:3.500A) Processing helix chain 'I' and resid 532 through 548 removed outlier: 3.606A pdb=" N LEU I 542 " --> pdb=" O LEU I 538 " (cutoff:3.500A) removed outlier: 3.645A pdb=" N ARG I 543 " --> pdb=" O PHE I 539 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N LYS I 547 " --> pdb=" O ARG I 543 " (cutoff:3.500A) removed outlier: 3.754A pdb=" N TYR I 548 " --> pdb=" O ILE I 544 " (cutoff:3.500A) Processing helix chain 'I' and resid 551 through 561 removed outlier: 4.533A pdb=" N TYR I 555 " --> pdb=" O TYR I 551 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N CYS I 556 " --> pdb=" O LEU I 552 " (cutoff:3.500A) Proline residue: I 557 - end of helix Processing helix chain 'I' and resid 569 through 580 removed outlier: 4.169A pdb=" N ALA I 573 " --> pdb=" O LYS I 569 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N THR I 576 " --> pdb=" O MET I 572 " (cutoff:3.500A) removed outlier: 4.517A pdb=" N VAL I 577 " --> pdb=" O ALA I 573 " (cutoff:3.500A) removed outlier: 3.529A pdb=" N ILE I 578 " --> pdb=" O TYR I 574 " (cutoff:3.500A) Processing helix chain 'I' and resid 584 through 599 removed outlier: 3.707A pdb=" N ALA I 588 " --> pdb=" O THR I 584 " (cutoff:3.500A) removed outlier: 3.623A pdb=" N GLU I 589 " --> pdb=" O PRO I 585 " (cutoff:3.500A) removed outlier: 3.855A pdb=" N ALA I 592 " --> pdb=" O ALA I 588 " (cutoff:3.500A) removed outlier: 3.537A pdb=" N TYR I 599 " --> pdb=" O LEU I 595 " (cutoff:3.500A) Processing helix chain 'I' and resid 600 through 616 removed outlier: 3.689A pdb=" N PHE I 605 " --> pdb=" O VAL I 601 " (cutoff:3.500A) removed outlier: 3.843A pdb=" N GLN I 606 " --> pdb=" O MET I 602 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N VAL I 607 " --> pdb=" O GLU I 603 " (cutoff:3.500A) removed outlier: 4.775A pdb=" N TYR I 608 " --> pdb=" O SER I 604 " (cutoff:3.500A) removed outlier: 3.902A pdb=" N GLU I 609 " --> pdb=" O PHE I 605 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N LYS I 610 " --> pdb=" O GLN I 606 " (cutoff:3.500A) Proline residue: I 613 - end of helix Proline residue: I 616 - end of helix Processing helix chain 'I' and resid 617 through 635 removed outlier: 4.321A pdb=" N TYR I 621 " --> pdb=" O PRO I 617 " (cutoff:3.500A) removed outlier: 4.136A pdb=" N GLU I 622 " --> pdb=" O GLU I 618 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N LEU I 623 " --> pdb=" O ILE I 619 " (cutoff:3.500A) removed outlier: 3.769A pdb=" N GLU I 626 " --> pdb=" O GLU I 622 " (cutoff:3.500A) removed outlier: 4.202A pdb=" N GLU I 629 " --> pdb=" O ILE I 625 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N VAL I 630 " --> pdb=" O GLU I 626 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N SER I 633 " --> pdb=" O GLU I 629 " (cutoff:3.500A) Processing helix chain 'I' and resid 640 through 653 removed outlier: 3.911A pdb=" N ILE I 644 " --> pdb=" O SER I 640 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N LEU I 647 " --> pdb=" O HIS I 643 " (cutoff:3.500A) removed outlier: 3.676A pdb=" N LYS I 650 " --> pdb=" O PHE I 646 " (cutoff:3.500A) removed outlier: 3.711A pdb=" N LEU I 652 " --> pdb=" O PHE I 648 " (cutoff:3.500A) removed outlier: 4.567A pdb=" N LYS I 653 " --> pdb=" O GLU I 649 " (cutoff:3.500A) Processing helix chain 'I' and resid 663 through 675 removed outlier: 4.070A pdb=" N GLU I 674 " --> pdb=" O SER I 670 " (cutoff:3.500A) removed outlier: 4.176A pdb=" N ARG I 675 " --> pdb=" O VAL I 671 " (cutoff:3.500A) Processing helix chain 'I' and resid 679 through 689 removed outlier: 3.583A pdb=" N ILE I 686 " --> pdb=" O LYS I 682 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N LEU I 687 " --> pdb=" O SER I 683 " (cutoff:3.500A) Processing helix chain 'I' and resid 706 through 721 removed outlier: 3.538A pdb=" N GLU I 717 " --> pdb=" O ILE I 713 " (cutoff:3.500A) removed outlier: 3.569A pdb=" N LEU I 720 " --> pdb=" O ALA I 716 " (cutoff:3.500A) Processing helix chain 'I' and resid 722 through 734 removed outlier: 4.129A pdb=" N ARG I 726 " --> pdb=" O PRO I 722 " (cutoff:3.500A) removed outlier: 4.665A pdb=" N GLU I 727 " --> pdb=" O SER I 723 " (cutoff:3.500A) removed outlier: 4.171A pdb=" N GLN I 730 " --> pdb=" O ARG I 726 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N GLU I 731 " --> pdb=" O GLU I 727 " (cutoff:3.500A) removed outlier: 3.825A pdb=" N CYS I 732 " --> pdb=" O LEU I 728 " (cutoff:3.500A) removed outlier: 4.255A pdb=" N GLN I 734 " --> pdb=" O GLN I 730 " (cutoff:3.500A) Processing helix chain 'I' and resid 739 through 757 removed outlier: 3.549A pdb=" N PHE I 748 " --> pdb=" O PHE I 744 " (cutoff:3.500A) removed outlier: 6.305A pdb=" N SER I 749 " --> pdb=" O VAL I 745 " (cutoff:3.500A) removed outlier: 3.768A pdb=" N ASP I 750 " --> pdb=" O ILE I 746 " (cutoff:3.500A) removed outlier: 3.637A pdb=" N PHE I 751 " --> pdb=" O LYS I 747 " (cutoff:3.500A) removed outlier: 4.234A pdb=" N GLU I 752 " --> pdb=" O PHE I 748 " (cutoff:3.500A) removed outlier: 4.488A pdb=" N SER I 754 " --> pdb=" O ASP I 750 " (cutoff:3.500A) removed outlier: 4.109A pdb=" N ILE I 755 " --> pdb=" O PHE I 751 " (cutoff:3.500A) Processing helix chain 'I' and resid 759 through 777 removed outlier: 3.868A pdb=" N GLU I 763 " --> pdb=" O ILE I 759 " (cutoff:3.500A) removed outlier: 3.783A pdb=" N ILE I 764 " --> pdb=" O ARG I 760 " (cutoff:3.500A) Proline residue: I 773 - end of helix removed outlier: 4.179A pdb=" N ARG I 776 " --> pdb=" O LEU I 772 " (cutoff:3.500A) removed outlier: 5.257A pdb=" N ASN I 777 " --> pdb=" O PRO I 773 " (cutoff:3.500A) Processing helix chain 'I' and resid 779 through 794 removed outlier: 5.033A pdb=" N SER I 783 " --> pdb=" O GLU I 779 " (cutoff:3.500A) removed outlier: 3.643A pdb=" N PHE I 784 " --> pdb=" O LEU I 780 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N LEU I 789 " --> pdb=" O GLU I 785 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N ASP I 793 " --> pdb=" O LEU I 789 " (cutoff:3.500A) Processing helix chain 'I' and resid 798 through 820 removed outlier: 5.044A pdb=" N LYS I 802 " --> pdb=" O LYS I 798 " (cutoff:3.500A) removed outlier: 3.526A pdb=" N VAL I 806 " --> pdb=" O LYS I 802 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N LEU I 807 " --> pdb=" O MET I 803 " (cutoff:3.500A) removed outlier: 3.673A pdb=" N SER I 819 " --> pdb=" O SER I 815 " (cutoff:3.500A) removed outlier: 5.789A pdb=" N HIS I 820 " --> pdb=" O ALA I 816 " (cutoff:3.500A) Processing helix chain 'x' and resid 215 through 223 removed outlier: 3.988A pdb=" N LYS x 221 " --> pdb=" O GLN x 217 " (cutoff:3.500A) removed outlier: 3.915A pdb=" N LEU x 222 " --> pdb=" O GLU x 218 " (cutoff:3.500A) removed outlier: 3.737A pdb=" N LEU x 223 " --> pdb=" O ALA x 219 " (cutoff:3.500A) Processing helix chain 'x' and resid 224 through 230 removed outlier: 4.155A pdb=" N TYR x 228 " --> pdb=" O PRO x 224 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N LYS x 229 " --> pdb=" O VAL x 225 " (cutoff:3.500A) removed outlier: 5.080A pdb=" N ASP x 230 " --> pdb=" O HIS x 226 " (cutoff:3.500A) No H-bonds generated for 'chain 'x' and resid 224 through 230' Processing helix chain 'x' and resid 231 through 239 Processing helix chain 'x' and resid 253 through 264 Proline residue: x 257 - end of helix removed outlier: 3.850A pdb=" N LEU x 260 " --> pdb=" O LEU x 256 " (cutoff:3.500A) removed outlier: 3.666A pdb=" N VAL x 261 " --> pdb=" O PRO x 257 " (cutoff:3.500A) Processing helix chain 'x' and resid 279 through 295 removed outlier: 3.552A pdb=" N THR x 284 " --> pdb=" O ARG x 280 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N ARG x 289 " --> pdb=" O SER x 285 " (cutoff:3.500A) Processing helix chain 'x' and resid 323 through 334 removed outlier: 3.654A pdb=" N LEU x 327 " --> pdb=" O THR x 323 " (cutoff:3.500A) removed outlier: 3.777A pdb=" N LEU x 328 " --> pdb=" O ASP x 324 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N ARG x 329 " --> pdb=" O GLY x 325 " (cutoff:3.500A) removed outlier: 3.767A pdb=" N PHE x 331 " --> pdb=" O LEU x 327 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N LEU x 332 " --> pdb=" O LEU x 328 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N THR x 333 " --> pdb=" O ARG x 329 " (cutoff:3.500A) Processing helix chain 'x' and resid 352 through 366 removed outlier: 4.134A pdb=" N ASP x 364 " --> pdb=" O GLY x 360 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N LEU x 366 " --> pdb=" O LEU x 362 " (cutoff:3.500A) Processing helix chain 'x' and resid 379 through 391 removed outlier: 4.426A pdb=" N LYS x 384 " --> pdb=" O THR x 380 " (cutoff:3.500A) removed outlier: 5.328A pdb=" N LYS x 385 " --> pdb=" O MET x 381 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N PHE x 386 " --> pdb=" O ASN x 382 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N SER x 387 " --> pdb=" O ALA x 383 " (cutoff:3.500A) removed outlier: 3.866A pdb=" N GLU x 388 " --> pdb=" O LYS x 384 " (cutoff:3.500A) removed outlier: 3.695A pdb=" N PHE x 389 " --> pdb=" O LYS x 385 " (cutoff:3.500A) Processing helix chain 'x' and resid 416 through 431 removed outlier: 3.533A pdb=" N ALA x 420 " --> pdb=" O ASN x 416 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N PHE x 426 " --> pdb=" O ILE x 422 " (cutoff:3.500A) removed outlier: 4.115A pdb=" N THR x 431 " --> pdb=" O GLN x 427 " (cutoff:3.500A) Processing helix chain 'x' and resid 444 through 463 removed outlier: 3.682A pdb=" N ILE x 448 " --> pdb=" O GLY x 444 " (cutoff:3.500A) removed outlier: 3.806A pdb=" N THR x 451 " --> pdb=" O GLU x 447 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N ILE x 458 " --> pdb=" O LYS x 454 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N SER x 460 " --> pdb=" O GLU x 456 " (cutoff:3.500A) removed outlier: 5.570A pdb=" N GLY x 463 " --> pdb=" O MET x 459 " (cutoff:3.500A) Processing helix chain 'x' and resid 479 through 489 removed outlier: 4.474A pdb=" N LYS x 485 " --> pdb=" O GLU x 481 " (cutoff:3.500A) removed outlier: 4.542A pdb=" N ILE x 486 " --> pdb=" O GLN x 482 " (cutoff:3.500A) removed outlier: 4.855A pdb=" N PHE x 487 " --> pdb=" O GLN x 483 " (cutoff:3.500A) removed outlier: 3.745A pdb=" N GLN x 488 " --> pdb=" O LEU x 484 " (cutoff:3.500A) Proline residue: x 489 - end of helix Processing helix chain 'x' and resid 502 through 507 removed outlier: 4.068A pdb=" N THR x 506 " --> pdb=" O ASN x 502 " (cutoff:3.500A) removed outlier: 3.579A pdb=" N SER x 507 " --> pdb=" O ILE x 503 " (cutoff:3.500A) No H-bonds generated for 'chain 'x' and resid 502 through 507' Processing helix chain 'x' and resid 542 through 555 removed outlier: 3.800A pdb=" N ARG x 552 " --> pdb=" O GLN x 548 " (cutoff:3.500A) removed outlier: 4.425A pdb=" N ALA x 553 " --> pdb=" O ARG x 549 " (cutoff:3.500A) removed outlier: 4.183A pdb=" N GLY x 554 " --> pdb=" O ALA x 550 " (cutoff:3.500A) removed outlier: 4.582A pdb=" N ARG x 555 " --> pdb=" O GLY x 551 " (cutoff:3.500A) Processing helix chain 'x' and resid 566 through 573 Processing helix chain 'x' and resid 580 through 585 removed outlier: 3.565A pdb=" N ARG x 584 " --> pdb=" O PRO x 580 " (cutoff:3.500A) Processing helix chain 'x' and resid 587 through 598 removed outlier: 4.301A pdb=" N LEU x 592 " --> pdb=" O SER x 588 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N GLY x 598 " --> pdb=" O LEU x 594 " (cutoff:3.500A) Processing helix chain 'x' and resid 612 through 627 removed outlier: 3.654A pdb=" N SER x 619 " --> pdb=" O THR x 615 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N LEU x 620 " --> pdb=" O LEU x 616 " (cutoff:3.500A) removed outlier: 3.777A pdb=" N LEU x 626 " --> pdb=" O ASN x 622 " (cutoff:3.500A) removed outlier: 3.506A pdb=" N GLY x 627 " --> pdb=" O LEU x 623 " (cutoff:3.500A) Processing helix chain 'x' and resid 636 through 646 removed outlier: 3.694A pdb=" N MET x 641 " --> pdb=" O ARG x 637 " (cutoff:3.500A) removed outlier: 3.838A pdb=" N CYS x 643 " --> pdb=" O GLY x 639 " (cutoff:3.500A) removed outlier: 3.809A pdb=" N GLU x 644 " --> pdb=" O LYS x 640 " (cutoff:3.500A) Proline residue: x 646 - end of helix Processing helix chain 'x' and resid 648 through 660 removed outlier: 3.908A pdb=" N LYS x 653 " --> pdb=" O PRO x 649 " (cutoff:3.500A) removed outlier: 3.603A pdb=" N VAL x 654 " --> pdb=" O GLU x 650 " (cutoff:3.500A) removed outlier: 3.607A pdb=" N TYR x 656 " --> pdb=" O ALA x 652 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N ALA x 659 " --> pdb=" O LEU x 655 " (cutoff:3.500A) Processing helix chain 'x' and resid 667 through 681 removed outlier: 4.164A pdb=" N THR x 673 " --> pdb=" O GLU x 669 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N HIS x 679 " --> pdb=" O VAL x 675 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N GLU x 680 " --> pdb=" O SER x 676 " (cutoff:3.500A) Processing helix chain 'x' and resid 688 through 697 removed outlier: 3.726A pdb=" N ALA x 692 " --> pdb=" O GLN x 688 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N SER x 695 " --> pdb=" O ASP x 691 " (cutoff:3.500A) removed outlier: 3.828A pdb=" N VAL x 696 " --> pdb=" O ALA x 692 " (cutoff:3.500A) Processing helix chain 'x' and resid 702 through 718 removed outlier: 3.742A pdb=" N LEU x 706 " --> pdb=" O SER x 702 " (cutoff:3.500A) removed outlier: 4.357A pdb=" N TYR x 707 " --> pdb=" O ASP x 703 " (cutoff:3.500A) removed outlier: 3.848A pdb=" N LYS x 718 " --> pdb=" O TRP x 714 " (cutoff:3.500A) Processing helix chain 'x' and resid 720 through 728 removed outlier: 4.266A pdb=" N CYS x 724 " --> pdb=" O SER x 720 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N GLN x 725 " --> pdb=" O ARG x 721 " (cutoff:3.500A) Processing helix chain 'x' and resid 730 through 752 Processing helix chain 'x' and resid 753 through 764 removed outlier: 3.688A pdb=" N GLN x 759 " --> pdb=" O GLU x 755 " (cutoff:3.500A) removed outlier: 3.942A pdb=" N ALA x 760 " --> pdb=" O LYS x 756 " (cutoff:3.500A) removed outlier: 3.662A pdb=" N ARG x 761 " --> pdb=" O ASN x 757 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N ILE x 764 " --> pdb=" O ALA x 760 " (cutoff:3.500A) Processing helix chain 'x' and resid 769 through 784 removed outlier: 4.399A pdb=" N ALA x 773 " --> pdb=" O GLY x 769 " (cutoff:3.500A) removed outlier: 3.889A pdb=" N THR x 776 " --> pdb=" O ASN x 772 " (cutoff:3.500A) removed outlier: 3.544A pdb=" N ARG x 777 " --> pdb=" O ALA x 773 " (cutoff:3.500A) removed outlier: 3.582A pdb=" N SER x 781 " --> pdb=" O ARG x 777 " (cutoff:3.500A) Proline residue: x 784 - end of helix Processing helix chain 'x' and resid 813 through 821 removed outlier: 3.500A pdb=" N VAL x 817 " --> pdb=" O SER x 813 " (cutoff:3.500A) removed outlier: 3.563A pdb=" N HIS x 819 " --> pdb=" O LEU x 815 " (cutoff:3.500A) Processing helix chain 'x' and resid 851 through 859 removed outlier: 4.632A pdb=" N LEU x 855 " --> pdb=" O LYS x 851 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N ILE x 856 " --> pdb=" O GLU x 852 " (cutoff:3.500A) Processing helix chain 'x' and resid 861 through 867 removed outlier: 6.377A pdb=" N ASP x 865 " --> pdb=" O GLN x 861 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N LEU x 866 " --> pdb=" O ILE x 862 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N ILE x 867 " --> pdb=" O PHE x 863 " (cutoff:3.500A) No H-bonds generated for 'chain 'x' and resid 861 through 867' Processing sheet with id= 1, first strand: chain 'A' and resid 189 through 192 No H-bonds generated for sheet with id= 1 Processing sheet with id= 2, first strand: chain 'A' and resid 299 through 302 removed outlier: 7.049A pdb=" N LYS A 299 " --> pdb=" O MET A 493 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'A' and resid 590 through 593 removed outlier: 8.274A pdb=" N TYR A 590 " --> pdb=" O THR A 602 " (cutoff:3.500A) Processing sheet with id= 4, first strand: chain 'A' and resid 977 through 984 removed outlier: 4.379A pdb=" N ASN A 977 " --> pdb=" O ASN A 974 " (cutoff:3.500A) Processing sheet with id= 5, first strand: chain 'A' and resid 1160 through 1164 removed outlier: 3.817A pdb=" N LEU A1160 " --> pdb=" O LEU A1171 " (cutoff:3.500A) removed outlier: 6.145A pdb=" N ASP A1166 " --> pdb=" O LEU A1054 " (cutoff:3.500A) Processing sheet with id= 6, first strand: chain 'A' and resid 1257 through 1262 removed outlier: 6.607A pdb=" N GLY A1284 " --> pdb=" O LEU A1302 " (cutoff:3.500A) removed outlier: 6.821A pdb=" N LEU A1288 " --> pdb=" O THR A1297 " (cutoff:3.500A) Processing sheet with id= 7, first strand: chain 'A' and resid 1405 through 1409 removed outlier: 6.705A pdb=" N ILE A1405 " --> pdb=" O GLY A1428 " (cutoff:3.500A) Processing sheet with id= 8, first strand: chain 'A' and resid 1572 through 1575 No H-bonds generated for sheet with id= 8 Processing sheet with id= 9, first strand: chain 'A' and resid 1679 through 1683 removed outlier: 3.668A pdb=" N SER A1680 " --> pdb=" O GLU A1704 " (cutoff:3.500A) removed outlier: 4.977A pdb=" N THR A1771 " --> pdb=" O LYS A1731 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N TRP A1733 " --> pdb=" O THR A1771 " (cutoff:3.500A) removed outlier: 5.264A pdb=" N GLY A1772 " --> pdb=" O ASN A1789 " (cutoff:3.500A) Processing sheet with id= 10, first strand: chain 'A' and resid 1708 through 1711 removed outlier: 3.768A pdb=" N LEU A1727 " --> pdb=" O VAL A1711 " (cutoff:3.500A) Processing sheet with id= 11, first strand: chain 'A' and resid 1857 through 1865 removed outlier: 6.210A pdb=" N VAL A1857 " --> pdb=" O GLY A1877 " (cutoff:3.500A) removed outlier: 4.230A pdb=" N GLY A1877 " --> pdb=" O VAL A1857 " (cutoff:3.500A) removed outlier: 4.619A pdb=" N ARG A1859 " --> pdb=" O ILE A1875 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N THR A1865 " --> pdb=" O ASN A1869 " (cutoff:3.500A) removed outlier: 4.411A pdb=" N ASN A1869 " --> pdb=" O THR A1865 " (cutoff:3.500A) removed outlier: 7.713A pdb=" N ASP A1854 " --> pdb=" O THR A1936 " (cutoff:3.500A) Processing sheet with id= 12, first strand: chain 'A' and resid 1983 through 1991 removed outlier: 7.847A pdb=" N GLU A1983 " --> pdb=" O HIS A1895 " (cutoff:3.500A) removed outlier: 4.558A pdb=" N HIS A1895 " --> pdb=" O GLU A1983 " (cutoff:3.500A) removed outlier: 7.707A pdb=" N GLY A1887 " --> pdb=" O ILE A1991 " (cutoff:3.500A) Processing sheet with id= 13, first strand: chain 'A' and resid 2168 through 2172 removed outlier: 3.589A pdb=" N SER A2172 " --> pdb=" O LEU A2302 " (cutoff:3.500A) removed outlier: 6.239A pdb=" N ALA A2304 " --> pdb=" O SER A2172 " (cutoff:3.500A) removed outlier: 4.022A pdb=" N GLY A2257 " --> pdb=" O ILE A2207 " (cutoff:3.500A) removed outlier: 5.412A pdb=" N VAL A2203 " --> pdb=" O THR A2261 " (cutoff:3.500A) removed outlier: 6.552A pdb=" N TYR A2208 " --> pdb=" O LYS A2222 " (cutoff:3.500A) removed outlier: 4.021A pdb=" N VAL A2182 " --> pdb=" O LYS A2217 " (cutoff:3.500A) removed outlier: 4.486A pdb=" N GLN A2338 " --> pdb=" O ASN A2181 " (cutoff:3.500A) Processing sheet with id= 14, first strand: chain 'A' and resid 2348 through 2351 Processing sheet with id= 15, first strand: chain 'A' and resid 1876 through 1884 removed outlier: 3.653A pdb=" N THR A1881 " --> pdb=" O PHE A1890 " (cutoff:3.500A) removed outlier: 3.799A pdb=" N HIS A1888 " --> pdb=" O ASN A1883 " (cutoff:3.500A) Processing sheet with id= 16, first strand: chain 'A' and resid 2205 through 2208 Processing sheet with id= 17, first strand: chain 'A' and resid 2304 through 2307 removed outlier: 5.358A pdb=" N ALA A2304 " --> pdb=" O ALA A2337 " (cutoff:3.500A) Processing sheet with id= 18, first strand: chain 'C' and resid 193 through 199 removed outlier: 7.323A pdb=" N ASN C 310 " --> pdb=" O MET C 263 " (cutoff:3.500A) Processing sheet with id= 19, first strand: chain 'C' and resid 474 through 477 removed outlier: 3.704A pdb=" N LYS C 474 " --> pdb=" O LEU C 485 " (cutoff:3.500A) removed outlier: 6.866A pdb=" N LEU C 485 " --> pdb=" O LEU C 473 " (cutoff:3.500A) removed outlier: 6.387A pdb=" N TRP C 469 " --> pdb=" O TYR C 489 " (cutoff:3.500A) removed outlier: 6.552A pdb=" N VAL C 580 " --> pdb=" O THR C 498 " (cutoff:3.500A) removed outlier: 9.262A pdb=" N THR C 498 " --> pdb=" O VAL C 580 " (cutoff:3.500A) removed outlier: 4.672A pdb=" N ASP C 497 " --> pdb=" O VAL C 539 " (cutoff:3.500A) Processing sheet with id= 20, first strand: chain 'C' and resid 491 through 494 removed outlier: 7.553A pdb=" N GLY C 491 " --> pdb=" O LYS C 558 " (cutoff:3.500A) removed outlier: 3.808A pdb=" N LYS C 558 " --> pdb=" O GLY C 491 " (cutoff:3.500A) Processing sheet with id= 21, first strand: chain 'C' and resid 542 through 545 removed outlier: 4.518A pdb=" N ILE C 542 " --> pdb=" O VAL C 553 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N VAL C 553 " --> pdb=" O ILE C 542 " (cutoff:3.500A) Processing sheet with id= 22, first strand: chain 'C' and resid 632 through 637 removed outlier: 4.733A pdb=" N GLU C 641 " --> pdb=" O GLU C 637 " (cutoff:3.500A) removed outlier: 5.797A pdb=" N VAL C 606 " --> pdb=" O SER C 671 " (cutoff:3.500A) removed outlier: 7.994A pdb=" N GLU C 667 " --> pdb=" O LEU C 610 " (cutoff:3.500A) Processing sheet with id= 23, first strand: chain 'C' and resid 677 through 681 removed outlier: 4.671A pdb=" N LEU C 899 " --> pdb=" O VAL C 894 " (cutoff:3.500A) Processing sheet with id= 24, first strand: chain 'C' and resid 772 through 777 removed outlier: 3.793A pdb=" N ASP C 777 " --> pdb=" O LEU C 820 " (cutoff:3.500A) removed outlier: 8.174A pdb=" N GLY C 815 " --> pdb=" O MET C 715 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N MET C 715 " --> pdb=" O GLY C 815 " (cutoff:3.500A) removed outlier: 6.756A pdb=" N SER C 709 " --> pdb=" O LEU C 821 " (cutoff:3.500A) removed outlier: 7.905A pdb=" N GLY C 705 " --> pdb=" O PRO C 826 " (cutoff:3.500A) Processing sheet with id= 25, first strand: chain 'C' and resid 862 through 868 Processing sheet with id= 26, first strand: chain 'C' and resid 857 through 861 No H-bonds generated for sheet with id= 26 Processing sheet with id= 27, first strand: chain 'D' and resid 265 through 272 removed outlier: 3.667A pdb=" N SER D1550 " --> pdb=" O GLU D 266 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N LEU D 272 " --> pdb=" O LEU D1544 " (cutoff:3.500A) removed outlier: 3.539A pdb=" N LEU D1544 " --> pdb=" O LEU D 272 " (cutoff:3.500A) removed outlier: 8.153A pdb=" N ASP D1678 " --> pdb=" O ALA D1717 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N LYS D1719 " --> pdb=" O ASP D1678 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N GLU D1679 " --> pdb=" O SER D1580 " (cutoff:3.500A) Processing sheet with id= 28, first strand: chain 'D' and resid 452 through 456 Processing sheet with id= 29, first strand: chain 'D' and resid 516 through 521 removed outlier: 3.575A pdb=" N ALA D 521 " --> pdb=" O SER D 671 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N LEU D 630 " --> pdb=" O LYS D 556 " (cutoff:3.500A) Processing sheet with id= 30, first strand: chain 'D' and resid 701 through 709 Processing sheet with id= 31, first strand: chain 'D' and resid 850 through 855 No H-bonds generated for sheet with id= 31 Processing sheet with id= 32, first strand: chain 'D' and resid 987 through 991 Processing sheet with id= 33, first strand: chain 'D' and resid 1202 through 1211 removed outlier: 3.620A pdb=" N SER D1203 " --> pdb=" O ILE D1223 " (cutoff:3.500A) removed outlier: 6.604A pdb=" N VAL D1215 " --> pdb=" O ILE D1211 " (cutoff:3.500A) removed outlier: 5.895A pdb=" N SER D1214 " --> pdb=" O LEU D1276 " (cutoff:3.500A) Processing sheet with id= 34, first strand: chain 'D' and resid 1253 through 1259 removed outlier: 3.548A pdb=" N TYR D1253 " --> pdb=" O LEU D1243 " (cutoff:3.500A) Processing sheet with id= 35, first strand: chain 'D' and resid 1423 through 1426 removed outlier: 4.119A pdb=" N LEU D1446 " --> pdb=" O ILE D1425 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N LEU D1470 " --> pdb=" O ARG D1394 " (cutoff:3.500A) removed outlier: 5.925A pdb=" N ASN D1531 " --> pdb=" O SER D1365 " (cutoff:3.500A) Processing sheet with id= 36, first strand: chain 'D' and resid 1685 through 1690 removed outlier: 8.228A pdb=" N THR D1685 " --> pdb=" O TYR D1698 " (cutoff:3.500A) Processing sheet with id= 37, first strand: chain 'D' and resid 1820 through 1825 removed outlier: 3.861A pdb=" N THR D1825 " --> pdb=" O THR D1841 " (cutoff:3.500A) removed outlier: 7.681A pdb=" N THR D1841 " --> pdb=" O THR D1825 " (cutoff:3.500A) Processing sheet with id= 38, first strand: chain 'D' and resid 2051 through 2057 Processing sheet with id= 39, first strand: chain 'D' and resid 2061 through 2064 removed outlier: 6.722A pdb=" N ASP D2061 " --> pdb=" O GLU D2159 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N LEU D2063 " --> pdb=" O ASN D2161 " (cutoff:3.500A) removed outlier: 3.651A pdb=" N LYS D2163 " --> pdb=" O LEU D2063 " (cutoff:3.500A) removed outlier: 3.545A pdb=" N VAL D2162 " --> pdb=" O GLY D2136 " (cutoff:3.500A) removed outlier: 3.635A pdb=" N GLY D2136 " --> pdb=" O VAL D2162 " (cutoff:3.500A) removed outlier: 3.599A pdb=" N ASP D2147 " --> pdb=" O SER D2098 " (cutoff:3.500A) removed outlier: 6.891A pdb=" N SER D2098 " --> pdb=" O ASP D2147 " (cutoff:3.500A) Processing sheet with id= 40, first strand: chain 'd' and resid 19 through 22 No H-bonds generated for sheet with id= 40 Processing sheet with id= 41, first strand: chain 'd' and resid 27 through 31 Processing sheet with id= 42, first strand: chain 'd' and resid 40 through 43 removed outlier: 5.724A pdb=" N MET d 40 " --> pdb=" O GLY d 66 " (cutoff:3.500A) removed outlier: 4.063A pdb=" N GLY d 66 " --> pdb=" O MET d 40 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N VAL d 42 " --> pdb=" O VAL d 64 " (cutoff:3.500A) Processing sheet with id= 43, first strand: chain 'a' and resid 20 through 23 Processing sheet with id= 44, first strand: chain 'a' and resid 28 through 32 removed outlier: 4.234A pdb=" N VAL a 29 " --> pdb=" O GLU a 51 " (cutoff:3.500A) removed outlier: 3.657A pdb=" N GLU a 51 " --> pdb=" O VAL a 29 " (cutoff:3.500A) removed outlier: 6.288A pdb=" N CYS a 48 " --> pdb=" O LEU a 82 " (cutoff:3.500A) Processing sheet with id= 45, first strand: chain 'a' and resid 36 through 39 removed outlier: 3.948A pdb=" N ASN a 42 " --> pdb=" O ASP a 38 " (cutoff:3.500A) Processing sheet with id= 46, first strand: chain 'b' and resid 73 through 76 removed outlier: 3.765A pdb=" N SER b 76 " --> pdb=" O VAL b 43 " (cutoff:3.500A) removed outlier: 4.601A pdb=" N THR b 23 " --> pdb=" O LEU b 19 " (cutoff:3.500A) removed outlier: 3.607A pdb=" N LEU b 19 " --> pdb=" O THR b 23 " (cutoff:3.500A) removed outlier: 4.072A pdb=" N THR b 16 " --> pdb=" O ILE b 96 " (cutoff:3.500A) removed outlier: 3.856A pdb=" N ILE b 96 " --> pdb=" O THR b 16 " (cutoff:3.500A) removed outlier: 3.709A pdb=" N GLN b 94 " --> pdb=" O GLU b 18 " (cutoff:3.500A) Processing sheet with id= 47, first strand: chain 'c' and resid 67 through 70 removed outlier: 3.901A pdb=" N LEU c 94 " --> pdb=" O LEU c 69 " (cutoff:3.500A) Processing sheet with id= 48, first strand: chain 'c' and resid 84 through 92 removed outlier: 3.738A pdb=" N ILE c 85 " --> pdb=" O GLU c 78 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N TRP c 76 " --> pdb=" O ARG c 87 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N ARG c 89 " --> pdb=" O GLU c 74 " (cutoff:3.500A) removed outlier: 3.773A pdb=" N GLU c 74 " --> pdb=" O ARG c 89 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N LYS c 53 " --> pdb=" O LEU c 75 " (cutoff:3.500A) removed outlier: 4.613A pdb=" N HIS c 52 " --> pdb=" O LEU c 48 " (cutoff:3.500A) removed outlier: 3.696A pdb=" N LEU c 48 " --> pdb=" O HIS c 52 " (cutoff:3.500A) removed outlier: 3.740A pdb=" N ALA c 56 " --> pdb=" O VAL c 44 " (cutoff:3.500A) removed outlier: 3.587A pdb=" N VAL c 44 " --> pdb=" O ALA c 56 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N THR c 107 " --> pdb=" O PRO c 43 " (cutoff:3.500A) Processing sheet with id= 49, first strand: chain 'e' and resid 57 through 60 removed outlier: 4.515A pdb=" N VAL e 58 " --> pdb=" O LYS e 40 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N LYS e 40 " --> pdb=" O VAL e 58 " (cutoff:3.500A) removed outlier: 3.599A pdb=" N ARG e 38 " --> pdb=" O ILE e 60 " (cutoff:3.500A) removed outlier: 3.575A pdb=" N THR e 91 " --> pdb=" O THR e 28 " (cutoff:3.500A) removed outlier: 4.829A pdb=" N LEU e 89 " --> pdb=" O TRP e 30 " (cutoff:3.500A) Processing sheet with id= 50, first strand: chain 'f' and resid 27 through 31 removed outlier: 4.554A pdb=" N THR f 36 " --> pdb=" O LEU f 31 " (cutoff:3.500A) Processing sheet with id= 51, first strand: chain 'g' and resid 15 through 18 removed outlier: 3.559A pdb=" N SER g 70 " --> pdb=" O ASN g 18 " (cutoff:3.500A) Processing sheet with id= 52, first strand: chain 'g' and resid 24 through 27 removed outlier: 4.645A pdb=" N LYS g 24 " --> pdb=" O ILE g 46 " (cutoff:3.500A) Processing sheet with id= 53, first strand: chain 'o' and resid 12 through 15 removed outlier: 4.424A pdb=" N THR o 60 " --> pdb=" O THR o 38 " (cutoff:3.500A) removed outlier: 4.983A pdb=" N GLY o 82 " --> pdb=" O LEU o 59 " (cutoff:3.500A) removed outlier: 4.391A pdb=" N SER o 104 " --> pdb=" O LEU o 81 " (cutoff:3.500A) removed outlier: 5.187A pdb=" N ILE o 130 " --> pdb=" O LEU o 103 " (cutoff:3.500A) Processing sheet with id= 54, first strand: chain 'p' and resid 58 through 62 Processing sheet with id= 55, first strand: chain 'h' and resid 43 through 46 Processing sheet with id= 56, first strand: chain 'h' and resid 77 through 83 removed outlier: 6.343A pdb=" N CYS h 48 " --> pdb=" O LEU h 82 " (cutoff:3.500A) removed outlier: 4.089A pdb=" N ARG h 28 " --> pdb=" O THR h 24 " (cutoff:3.500A) removed outlier: 6.897A pdb=" N LYS h 19 " --> pdb=" O GLU h 98 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N SER h 94 " --> pdb=" O LEU h 23 " (cutoff:3.500A) Processing sheet with id= 57, first strand: chain 'i' and resid 27 through 30 removed outlier: 6.398A pdb=" N GLY i 36 " --> pdb=" O VAL i 62 " (cutoff:3.500A) Processing sheet with id= 58, first strand: chain 'j' and resid 27 through 32 removed outlier: 4.535A pdb=" N THR j 36 " --> pdb=" O LEU j 31 " (cutoff:3.500A) removed outlier: 5.477A pdb=" N ALA j 56 " --> pdb=" O LEU j 68 " (cutoff:3.500A) removed outlier: 3.987A pdb=" N GLY j 66 " --> pdb=" O GLU j 58 " (cutoff:3.500A) Processing sheet with id= 59, first strand: chain 'k' and resid 23 through 27 removed outlier: 3.647A pdb=" N ARG k 23 " --> pdb=" O ILE k 19 " (cutoff:3.500A) removed outlier: 7.197A pdb=" N LYS k 14 " --> pdb=" O LEU k 74 " (cutoff:3.500A) Processing sheet with id= 60, first strand: chain 'l' and resid 42 through 45 Processing sheet with id= 61, first strand: chain 'l' and resid 55 through 60 removed outlier: 4.043A pdb=" N ALA l 55 " --> pdb=" O GLU l 51 " (cutoff:3.500A) removed outlier: 6.177A pdb=" N ASP l 46 " --> pdb=" O LYS l 32 " (cutoff:3.500A) removed outlier: 5.487A pdb=" N LYS l 32 " --> pdb=" O ASP l 46 " (cutoff:3.500A) removed outlier: 3.684A pdb=" N THR l 28 " --> pdb=" O THR l 50 " (cutoff:3.500A) removed outlier: 3.842A pdb=" N PHE l 71 " --> pdb=" O GLU l 22 " (cutoff:3.500A) Processing sheet with id= 62, first strand: chain 'm' and resid 79 through 82 removed outlier: 4.520A pdb=" N THR m 23 " --> pdb=" O LEU m 19 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N THR m 16 " --> pdb=" O ILE m 96 " (cutoff:3.500A) Processing sheet with id= 63, first strand: chain 'n' and resid 72 through 76 removed outlier: 4.314A pdb=" N HIS n 52 " --> pdb=" O LEU n 48 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N VAL n 103 " --> pdb=" O SER n 47 " (cutoff:3.500A) Processing sheet with id= 64, first strand: chain 'u' and resid 420 through 424 Processing sheet with id= 65, first strand: chain 'v' and resid 57 through 61 removed outlier: 8.602A pdb=" N TYR v 57 " --> pdb=" O LYS v 69 " (cutoff:3.500A) removed outlier: 4.684A pdb=" N LYS v 65 " --> pdb=" O ASN v 61 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N LEU v 66 " --> pdb=" O HIS v 75 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N THR v 73 " --> pdb=" O CYS v 68 " (cutoff:3.500A) Processing sheet with id= 66, first strand: chain 'v' and resid 154 through 159 removed outlier: 6.753A pdb=" N LYS v 248 " --> pdb=" O TYR v 159 " (cutoff:3.500A) removed outlier: 3.680A pdb=" N LEU v 249 " --> pdb=" O ASP v 244 " (cutoff:3.500A) removed outlier: 3.512A pdb=" N ASP v 244 " --> pdb=" O LEU v 249 " (cutoff:3.500A) Processing sheet with id= 67, first strand: chain 'v' and resid 178 through 184 removed outlier: 4.143A pdb=" N LYS v 197 " --> pdb=" O LEU v 213 " (cutoff:3.500A) Processing sheet with id= 68, first strand: chain '2' and resid 327 through 331 removed outlier: 5.805A pdb=" N ASP 2 327 " --> pdb=" O ILE 2 349 " (cutoff:3.500A) removed outlier: 7.711A pdb=" N TYR 2 345 " --> pdb=" O ALA 2 331 " (cutoff:3.500A) Processing sheet with id= 69, first strand: chain '3' and resid 59 through 65 removed outlier: 4.890A pdb=" N TYR 3 59 " --> pdb=" O LEU 31231 " (cutoff:3.500A) removed outlier: 6.625A pdb=" N VAL 31225 " --> pdb=" O LEU 3 65 " (cutoff:3.500A) removed outlier: 6.004A pdb=" N LEU 31221 " --> pdb=" O GLN 31222 " (cutoff:3.500A) removed outlier: 6.511A pdb=" N THR 31224 " --> pdb=" O MET 31219 " (cutoff:3.500A) removed outlier: 4.477A pdb=" N MET 31219 " --> pdb=" O THR 31224 " (cutoff:3.500A) removed outlier: 6.642A pdb=" N GLY 31226 " --> pdb=" O ILE 31217 " (cutoff:3.500A) removed outlier: 4.521A pdb=" N ILE 31217 " --> pdb=" O GLY 31226 " (cutoff:3.500A) removed outlier: 6.687A pdb=" N PHE 31228 " --> pdb=" O GLY 31215 " (cutoff:3.500A) removed outlier: 5.088A pdb=" N GLY 31215 " --> pdb=" O PHE 31228 " (cutoff:3.500A) Processing sheet with id= 70, first strand: chain '3' and resid 73 through 77 removed outlier: 6.885A pdb=" N SER 3 91 " --> pdb=" O THR 3 106 " (cutoff:3.500A) removed outlier: 6.843A pdb=" N LEU 3 103 " --> pdb=" O ILE 3 114 " (cutoff:3.500A) Processing sheet with id= 71, first strand: chain '3' and resid 125 through 131 removed outlier: 7.938A pdb=" N THR 3 146 " --> pdb=" O ILE 3 162 " (cutoff:3.500A) removed outlier: 5.626A pdb=" N ILE 3 162 " --> pdb=" O THR 3 146 " (cutoff:3.500A) removed outlier: 6.489A pdb=" N ILE 3 159 " --> pdb=" O LEU 3 174 " (cutoff:3.500A) Processing sheet with id= 72, first strand: chain '3' and resid 191 through 196 removed outlier: 5.384A pdb=" N CYS 3 201 " --> pdb=" O ASP 3 196 " (cutoff:3.500A) removed outlier: 5.227A pdb=" N ARG 3 200 " --> pdb=" O VAL 3 216 " (cutoff:3.500A) removed outlier: 5.589A pdb=" N ASN 3 210 " --> pdb=" O SER 3 206 " (cutoff:3.500A) removed outlier: 6.548A pdb=" N LEU 3 215 " --> pdb=" O ILE 3 224 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N ILE 3 224 " --> pdb=" O LEU 3 215 " (cutoff:3.500A) removed outlier: 6.695A pdb=" N ASP 3 217 " --> pdb=" O LEU 3 222 " (cutoff:3.500A) removed outlier: 4.542A pdb=" N LEU 3 222 " --> pdb=" O ASP 3 217 " (cutoff:3.500A) removed outlier: 6.032A pdb=" N ALA 3 219 " --> pdb=" O GLN 3 220 " (cutoff:3.500A) Processing sheet with id= 73, first strand: chain '3' and resid 235 through 238 removed outlier: 6.523A pdb=" N LEU 3 255 " --> pdb=" O LEU 3 238 " (cutoff:3.500A) removed outlier: 4.866A pdb=" N CYS 3 251 " --> pdb=" O VAL 3 243 " (cutoff:3.500A) removed outlier: 3.661A pdb=" N ASP 3 239 " --> pdb=" O LEU 3 255 " (cutoff:3.500A) Processing sheet with id= 74, first strand: chain '3' and resid 278 through 282 removed outlier: 4.266A pdb=" N VAL 3 266 " --> pdb=" O VAL 3 288 " (cutoff:3.500A) removed outlier: 3.768A pdb=" N ALA 3 284 " --> pdb=" O PHE 3 270 " (cutoff:3.500A) Processing sheet with id= 75, first strand: chain '3' and resid 294 through 298 removed outlier: 3.584A pdb=" N PHE 3 294 " --> pdb=" O GLY 3 330 " (cutoff:3.500A) removed outlier: 5.231A pdb=" N PHE 3 326 " --> pdb=" O LEU 3 298 " (cutoff:3.500A) removed outlier: 4.411A pdb=" N HIS 3 334 " --> pdb=" O PHE 3 331 " (cutoff:3.500A) removed outlier: 7.116A pdb=" N ASN 3 333 " --> pdb=" O ILE 3 350 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N ASP 3 339 " --> pdb=" O PHE 3 344 " (cutoff:3.500A) removed outlier: 6.336A pdb=" N PHE 3 344 " --> pdb=" O ASP 3 339 " (cutoff:3.500A) removed outlier: 5.751A pdb=" N LEU 3 464 " --> pdb=" O ILE 3 350 " (cutoff:3.500A) Processing sheet with id= 76, first strand: chain '3' and resid 367 through 373 removed outlier: 3.633A pdb=" N SER 3 367 " --> pdb=" O GLN 3 382 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N ASP 3 376 " --> pdb=" O LEU 3 373 " (cutoff:3.500A) removed outlier: 4.261A pdb=" N ASP 3 387 " --> pdb=" O SER 3 383 " (cutoff:3.500A) removed outlier: 4.648A pdb=" N GLY 3 386 " --> pdb=" O ILE 3 413 " (cutoff:3.500A) removed outlier: 5.577A pdb=" N LYS 3 390 " --> pdb=" O TYR 3 409 " (cutoff:3.500A) removed outlier: 5.675A pdb=" N TYR 3 409 " --> pdb=" O LYS 3 390 " (cutoff:3.500A) removed outlier: 7.371A pdb=" N THR 3 392 " --> pdb=" O LEU 3 407 " (cutoff:3.500A) removed outlier: 5.519A pdb=" N LEU 3 407 " --> pdb=" O THR 3 392 " (cutoff:3.500A) Processing sheet with id= 77, first strand: chain '3' and resid 417 through 422 removed outlier: 3.798A pdb=" N TYR 3 426 " --> pdb=" O PHE 3 422 " (cutoff:3.500A) removed outlier: 7.492A pdb=" N GLY 3 425 " --> pdb=" O PHE 3 441 " (cutoff:3.500A) removed outlier: 6.465A pdb=" N LEU 3 438 " --> pdb=" O LEU 3 478 " (cutoff:3.500A) Processing sheet with id= 78, first strand: chain '3' and resid 490 through 493 removed outlier: 6.619A pdb=" N SER 3 499 " --> pdb=" O VAL 3 493 " (cutoff:3.500A) removed outlier: 5.829A pdb=" N LEU 3 498 " --> pdb=" O ASN 3 515 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N LYS 3 509 " --> pdb=" O HIS 3 504 " (cutoff:3.500A) Processing sheet with id= 79, first strand: chain '3' and resid 523 through 526 removed outlier: 3.568A pdb=" N ILE 3 523 " --> pdb=" O ILE 3 873 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N GLY 3 861 " --> pdb=" O PHE 3 852 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N ILE 3 865 " --> pdb=" O SER 3 848 " (cutoff:3.500A) removed outlier: 3.921A pdb=" N SER 3 848 " --> pdb=" O ILE 3 865 " (cutoff:3.500A) Processing sheet with id= 80, first strand: chain '3' and resid 533 through 539 removed outlier: 3.995A pdb=" N LYS 3 533 " --> pdb=" O THR 3 553 " (cutoff:3.500A) removed outlier: 6.082A pdb=" N ASN 3 547 " --> pdb=" O ASP 3 539 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N LYS 3 557 " --> pdb=" O PHE 3 554 " (cutoff:3.500A) Processing sheet with id= 81, first strand: chain '3' and resid 590 through 593 removed outlier: 3.597A pdb=" N ILE 3 600 " --> pdb=" O CYS 3 592 " (cutoff:3.500A) removed outlier: 3.694A pdb=" N ARG 3 617 " --> pdb=" O THR 3 613 " (cutoff:3.500A) Processing sheet with id= 82, first strand: chain '3' and resid 634 through 637 removed outlier: 3.768A pdb=" N CYS 3 634 " --> pdb=" O SER 3 645 " (cutoff:3.500A) removed outlier: 3.500A pdb=" N LEU 3 642 " --> pdb=" O PHE 3 654 " (cutoff:3.500A) removed outlier: 3.759A pdb=" N ASP 3 657 " --> pdb=" O SER 3 662 " (cutoff:3.500A) removed outlier: 5.472A pdb=" N SER 3 662 " --> pdb=" O ASP 3 657 " (cutoff:3.500A) Processing sheet with id= 83, first strand: chain '3' and resid 677 through 681 removed outlier: 3.919A pdb=" N LYS 3 678 " --> pdb=" O ALA 3 694 " (cutoff:3.500A) removed outlier: 4.440A pdb=" N MET 3 699 " --> pdb=" O ASP 3 695 " (cutoff:3.500A) removed outlier: 5.542A pdb=" N GLY 3 698 " --> pdb=" O VAL 3 721 " (cutoff:3.500A) removed outlier: 4.307A pdb=" N SER 3 717 " --> pdb=" O ILE 3 702 " (cutoff:3.500A) Processing sheet with id= 84, first strand: chain '3' and resid 726 through 732 removed outlier: 4.262A pdb=" N LEU 3 739 " --> pdb=" O ILE 3 755 " (cutoff:3.500A) removed outlier: 4.436A pdb=" N VAL 3 749 " --> pdb=" O LEU 3 745 " (cutoff:3.500A) removed outlier: 4.397A pdb=" N HIS 3 754 " --> pdb=" O ASP 3 764 " (cutoff:3.500A) removed outlier: 5.284A pdb=" N ASP 3 764 " --> pdb=" O HIS 3 754 " (cutoff:3.500A) Processing sheet with id= 85, first strand: chain '3' and resid 776 through 781 removed outlier: 6.291A pdb=" N SER 3 817 " --> pdb=" O THR 3 831 " (cutoff:3.500A) removed outlier: 4.872A pdb=" N THR 3 831 " --> pdb=" O SER 3 817 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N SER 3 829 " --> pdb=" O VAL 3 819 " (cutoff:3.500A) removed outlier: 6.115A pdb=" N THR 3 826 " --> pdb=" O LEU 3 841 " (cutoff:3.500A) removed outlier: 6.518A pdb=" N ARG 3 839 " --> pdb=" O VAL 3 828 " (cutoff:3.500A) Processing sheet with id= 86, first strand: chain '3' and resid 924 through 927 removed outlier: 7.052A pdb=" N ILE 3 942 " --> pdb=" O ARG 3 927 " (cutoff:3.500A) Processing sheet with id= 87, first strand: chain '3' and resid 971 through 974 Processing sheet with id= 88, first strand: chain '3' and resid 981 through 986 removed outlier: 3.607A pdb=" N SER 3 981 " --> pdb=" O CYS 3 997 " (cutoff:3.500A) removed outlier: 4.951A pdb=" N ASP 3 992 " --> pdb=" O ILE 31008 " (cutoff:3.500A) removed outlier: 4.011A pdb=" N ARG 31002 " --> pdb=" O ALA 3 998 " (cutoff:3.500A) removed outlier: 6.988A pdb=" N THR 31005 " --> pdb=" O LEU 31022 " (cutoff:3.500A) removed outlier: 5.857A pdb=" N SER 31016 " --> pdb=" O ASN 31011 " (cutoff:3.500A) Processing sheet with id= 89, first strand: chain '3' and resid 1033 through 1037 removed outlier: 4.588A pdb=" N ALA 31033 " --> pdb=" O ALA 31044 " (cutoff:3.500A) removed outlier: 6.583A pdb=" N LEU 31051 " --> pdb=" O ARG 31062 " (cutoff:3.500A) Processing sheet with id= 90, first strand: chain '3' and resid 1076 through 1080 Processing sheet with id= 91, first strand: chain '3' and resid 1120 through 1124 removed outlier: 3.716A pdb=" N VAL 31120 " --> pdb=" O ALA 31132 " (cutoff:3.500A) removed outlier: 6.517A pdb=" N THR 31128 " --> pdb=" O LEU 31124 " (cutoff:3.500A) removed outlier: 6.895A pdb=" N ALA 31127 " --> pdb=" O SER 31143 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N ASN 31137 " --> pdb=" O ASP 31133 " (cutoff:3.500A) removed outlier: 6.357A pdb=" N THR 31140 " --> pdb=" O LEU 31190 " (cutoff:3.500A) Processing sheet with id= 92, first strand: chain '3' and resid 155 through 159 removed outlier: 7.131A pdb=" N GLY 3 155 " --> pdb=" O LEU 3 179 " (cutoff:3.500A) Processing sheet with id= 93, first strand: chain '3' and resid 209 through 214 removed outlier: 4.150A pdb=" N GLN 3 209 " --> pdb=" O ARG 3 232 " (cutoff:3.500A) Processing sheet with id= 94, first strand: chain '3' and resid 250 through 257 Processing sheet with id= 95, first strand: chain '3' and resid 434 through 438 removed outlier: 4.808A pdb=" N ASN 3 434 " --> pdb=" O ASN 3 483 " (cutoff:3.500A) removed outlier: 4.796A pdb=" N ASN 3 483 " --> pdb=" O ASN 3 434 " (cutoff:3.500A) Processing sheet with id= 96, first strand: chain '3' and resid 606 through 609 removed outlier: 3.615A pdb=" N LEU 3 607 " --> pdb=" O TRP 3 624 " (cutoff:3.500A) removed outlier: 3.994A pdb=" N TRP 3 624 " --> pdb=" O LEU 3 607 " (cutoff:3.500A) removed outlier: 3.979A pdb=" N LEU 3 622 " --> pdb=" O HIS 3 609 " (cutoff:3.500A) Processing sheet with id= 97, first strand: chain '3' and resid 649 through 652 removed outlier: 5.621A pdb=" N TYR 3 649 " --> pdb=" O LEU 3 672 " (cutoff:3.500A) Processing sheet with id= 98, first strand: chain '3' and resid 939 through 945 removed outlier: 5.238A pdb=" N GLN 3 950 " --> pdb=" O HIS 3 945 " (cutoff:3.500A) Processing sheet with id= 99, first strand: chain '3' and resid 1001 through 1005 No H-bonds generated for sheet with id= 99 Processing sheet with id=100, first strand: chain '3' and resid 1048 through 1051 Processing sheet with id=101, first strand: chain '3' and resid 1136 through 1140 removed outlier: 7.632A pdb=" N GLY 31136 " --> pdb=" O VAL 31195 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N ASN 31191 " --> pdb=" O THR 31140 " (cutoff:3.500A) Processing sheet with id=102, first strand: chain '4' and resid 36 through 40 removed outlier: 6.156A pdb=" N ASN 4 9 " --> pdb=" O PHE 4 57 " (cutoff:3.500A) Processing sheet with id=103, first strand: chain '4' and resid 138 through 144 removed outlier: 3.506A pdb=" N ALA 4 151 " --> pdb=" O ILE 4 112 " (cutoff:3.500A) Processing sheet with id=104, first strand: chain 't' and resid 13 through 16 Processing sheet with id=105, first strand: chain 'r' and resid 13 through 16 Processing sheet with id=106, first strand: chain 'T' and resid 129 through 132 removed outlier: 6.684A pdb=" N ILE T 425 " --> pdb=" O SER T 132 " (cutoff:3.500A) Processing sheet with id=107, first strand: chain 'T' and resid 143 through 147 removed outlier: 8.342A pdb=" N GLU T 153 " --> pdb=" O LEU T 169 " (cutoff:3.500A) removed outlier: 4.611A pdb=" N THR T 163 " --> pdb=" O SER T 159 " (cutoff:3.500A) removed outlier: 6.567A pdb=" N VAL T 166 " --> pdb=" O LYS T 175 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N LYS T 173 " --> pdb=" O ASP T 168 " (cutoff:3.500A) Processing sheet with id=108, first strand: chain 'T' and resid 187 through 190 removed outlier: 3.710A pdb=" N ASP T 187 " --> pdb=" O VAL T 200 " (cutoff:3.500A) removed outlier: 6.556A pdb=" N CYS T 208 " --> pdb=" O ILE T 217 " (cutoff:3.500A) Processing sheet with id=109, first strand: chain 'T' and resid 228 through 233 removed outlier: 5.574A pdb=" N LEU T 238 " --> pdb=" O HIS T 233 " (cutoff:3.500A) removed outlier: 8.903A pdb=" N ASP T 237 " --> pdb=" O MET T 253 " (cutoff:3.500A) removed outlier: 4.241A pdb=" N GLY T 243 " --> pdb=" O VAL T 247 " (cutoff:3.500A) removed outlier: 4.966A pdb=" N VAL T 247 " --> pdb=" O GLY T 243 " (cutoff:3.500A) Processing sheet with id=110, first strand: chain 'T' and resid 270 through 275 removed outlier: 4.757A pdb=" N GLN T 280 " --> pdb=" O THR T 275 " (cutoff:3.500A) removed outlier: 4.201A pdb=" N VAL T 281 " --> pdb=" O TRP T 293 " (cutoff:3.500A) removed outlier: 6.627A pdb=" N LEU T 292 " --> pdb=" O MET T 301 " (cutoff:3.500A) Processing sheet with id=111, first strand: chain 'T' and resid 313 through 317 removed outlier: 3.756A pdb=" N ALA T 313 " --> pdb=" O ALA T 326 " (cutoff:3.500A) removed outlier: 4.905A pdb=" N SER T 322 " --> pdb=" O HIS T 317 " (cutoff:3.500A) Processing sheet with id=112, first strand: chain 'T' and resid 355 through 358 removed outlier: 8.442A pdb=" N ASP T 362 " --> pdb=" O TYR T 378 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N GLY T 368 " --> pdb=" O VAL T 372 " (cutoff:3.500A) removed outlier: 4.505A pdb=" N VAL T 372 " --> pdb=" O GLY T 368 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N GLN T 385 " --> pdb=" O PHE T 375 " (cutoff:3.500A) Processing sheet with id=113, first strand: chain 'T' and resid 403 through 408 removed outlier: 6.149A pdb=" N ARG T 413 " --> pdb=" O ASP T 408 " (cutoff:3.500A) Processing sheet with id=114, first strand: chain 'T' and resid 163 through 166 removed outlier: 3.564A pdb=" N THR T 176 " --> pdb=" O VAL T 166 " (cutoff:3.500A) Processing sheet with id=115, first strand: chain 'T' and resid 289 through 292 Processing sheet with id=116, first strand: chain 'T' and resid 413 through 418 removed outlier: 4.184A pdb=" N SER T 422 " --> pdb=" O GLU T 418 " (cutoff:3.500A) Processing sheet with id=117, first strand: chain 'Q' and resid 25 through 29 Processing sheet with id=118, first strand: chain 'Q' and resid 237 through 242 removed outlier: 6.409A pdb=" N SER Q 237 " --> pdb=" O GLN Q 254 " (cutoff:3.500A) removed outlier: 3.535A pdb=" N PHE Q 253 " --> pdb=" O LYS Q 203 " (cutoff:3.500A) removed outlier: 6.197A pdb=" N LYS Q 203 " --> pdb=" O PHE Q 253 " (cutoff:3.500A) removed outlier: 7.530A pdb=" N SER Q 204 " --> pdb=" O TRP Q 293 " (cutoff:3.500A) removed outlier: 3.668A pdb=" N GLY Q 279 " --> pdb=" O ILE Q 290 " (cutoff:3.500A) removed outlier: 10.964A pdb=" N LYS Q 277 " --> pdb=" O PRO Q 292 " (cutoff:3.500A) removed outlier: 4.659A pdb=" N LEU Q 276 " --> pdb=" O THR Q 272 " (cutoff:3.500A) removed outlier: 4.507A pdb=" N THR Q 272 " --> pdb=" O LEU Q 276 " (cutoff:3.500A) removed outlier: 4.945A pdb=" N GLU Q 268 " --> pdb=" O VAL Q 280 " (cutoff:3.500A) Processing sheet with id=119, first strand: chain 'Q' and resid 44 through 47 removed outlier: 5.244A pdb=" N TYR Q 44 " --> pdb=" O THR Q 58 " (cutoff:3.500A) Processing sheet with id=120, first strand: chain 'R' and resid 29 through 32 Processing sheet with id=121, first strand: chain 'R' and resid 172 through 177 removed outlier: 3.651A pdb=" N ARG R 174 " --> pdb=" O PHE R 183 " (cutoff:3.500A) removed outlier: 4.170A pdb=" N PHE R 183 " --> pdb=" O ARG R 174 " (cutoff:3.500A) removed outlier: 3.536A pdb=" N CYS R 181 " --> pdb=" O VAL R 176 " (cutoff:3.500A) Processing sheet with id=122, first strand: chain 'Y' and resid 93 through 98 removed outlier: 4.082A pdb=" N LYS Y 94 " --> pdb=" O ILE Y 82 " (cutoff:3.500A) removed outlier: 5.392A pdb=" N TYR Y 78 " --> pdb=" O LEU Y 98 " (cutoff:3.500A) removed outlier: 3.738A pdb=" N GLU Y 79 " --> pdb=" O MET Y 202 " (cutoff:3.500A) removed outlier: 3.825A pdb=" N ASP Y 184 " --> pdb=" O PHE Y 201 " (cutoff:3.500A) Processing sheet with id=123, first strand: chain 'Y' and resid 102 through 107 removed outlier: 6.930A pdb=" N SER Y 102 " --> pdb=" O PHE Y 145 " (cutoff:3.500A) removed outlier: 6.272A pdb=" N HIS Y 140 " --> pdb=" O LEU Y 159 " (cutoff:3.500A) removed outlier: 5.153A pdb=" N CYS Y 154 " --> pdb=" O LEU Y 180 " (cutoff:3.500A) Processing sheet with id=124, first strand: chain 'X' and resid 59 through 62 removed outlier: 3.553A pdb=" N ASP X 59 " --> pdb=" O LYS X 78 " (cutoff:3.500A) removed outlier: 6.189A pdb=" N ALA X 31 " --> pdb=" O TYR X 79 " (cutoff:3.500A) removed outlier: 4.577A pdb=" N TYR X 32 " --> pdb=" O THR X 107 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N THR X 107 " --> pdb=" O TYR X 32 " (cutoff:3.500A) Processing sheet with id=125, first strand: chain 'z' and resid 20 through 26 removed outlier: 3.792A pdb=" N GLY z 20 " --> pdb=" O THR z 17 " (cutoff:3.500A) removed outlier: 6.546A pdb=" N LYS z 12 " --> pdb=" O THR z 160 " (cutoff:3.500A) Processing sheet with id=126, first strand: chain 'z' and resid 53 through 56 removed outlier: 3.505A pdb=" N GLU z 54 " --> pdb=" O MET z 62 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N PHE z 63 " --> pdb=" O TRP z 99 " (cutoff:3.500A) removed outlier: 3.595A pdb=" N TRP z 99 " --> pdb=" O PHE z 63 " (cutoff:3.500A) removed outlier: 4.850A pdb=" N THR z 98 " --> pdb=" O ASP z 93 " (cutoff:3.500A) removed outlier: 3.964A pdb=" N PHE z 100 " --> pdb=" O GLY z 91 " (cutoff:3.500A) removed outlier: 4.744A pdb=" N LEU z 89 " --> pdb=" O THR z 102 " (cutoff:3.500A) removed outlier: 6.515A pdb=" N LEU z 90 " --> pdb=" O PHE z 117 " (cutoff:3.500A) Processing sheet with id=127, first strand: chain 'x' and resid 301 through 305 removed outlier: 3.936A pdb=" N LEU x 319 " --> pdb=" O GLU x 301 " (cutoff:3.500A) removed outlier: 4.453A pdb=" N GLN x 305 " --> pdb=" O TYR x 321 " (cutoff:3.500A) removed outlier: 4.821A pdb=" N CYS x 342 " --> pdb=" O GLN x 272 " (cutoff:3.500A) removed outlier: 6.350A pdb=" N GLN x 240 " --> pdb=" O LEU x 372 " (cutoff:3.500A) Processing sheet with id=128, first strand: chain 'x' and resid 403 through 410 removed outlier: 4.324A pdb=" N GLY x 559 " --> pdb=" O PRO x 404 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N THR x 410 " --> pdb=" O ARG x 563 " (cutoff:3.500A) removed outlier: 6.705A pdb=" N ARG x 514 " --> pdb=" O PRO x 558 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N GLN x 468 " --> pdb=" O ASN x 493 " (cutoff:3.500A) removed outlier: 3.606A pdb=" N LEU x 499 " --> pdb=" O THR x 472 " (cutoff:3.500A) Processing sheet with id=129, first strand: chain 'x' and resid 523 through 529 removed outlier: 5.483A pdb=" N LEU x 835 " --> pdb=" O GLY x 532 " (cutoff:3.500A) removed outlier: 3.697A pdb=" N GLN x 834 " --> pdb=" O ARG x 844 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N MET x 836 " --> pdb=" O PHE x 842 " (cutoff:3.500A) removed outlier: 3.728A pdb=" N THR x 838 " --> pdb=" O LYS x 840 " (cutoff:3.500A) removed outlier: 4.287A pdb=" N LYS x 840 " --> pdb=" O THR x 838 " (cutoff:3.500A) Processing sheet with id=130, first strand: chain 'x' and resid 794 through 797 removed outlier: 5.833A pdb=" N ASN x 786 " --> pdb=" O TYR x 832 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N VAL x 830 " --> pdb=" O VAL x 788 " (cutoff:3.500A) removed outlier: 7.238A pdb=" N LYS x 828 " --> pdb=" O LEU x 790 " (cutoff:3.500A) removed outlier: 4.199A pdb=" N TYR x 829 " --> pdb=" O ILE x 849 " (cutoff:3.500A) removed outlier: 3.675A pdb=" N GLN x 833 " --> pdb=" O ASP x 845 " (cutoff:3.500A) removed outlier: 7.290A pdb=" N ASP x 845 " --> pdb=" O GLN x 833 " (cutoff:3.500A) 5137 hydrogen bonds defined for protein. 15210 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 252 hydrogen bonds 452 hydrogen bond angles 0 basepair planarities 107 basepair parallelities 268 stacking parallelities Total time for adding SS restraints: 102.78 Time building geometry restraints manager: 39.65 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.19 - 1.32: 21839 1.32 - 1.45: 36125 1.45 - 1.57: 71731 1.57 - 1.70: 1104 1.70 - 1.83: 767 Bond restraints: 131566 Sorted by residual: bond pdb=" CA PRO 3 528 " pdb=" C PRO 3 528 " ideal model delta sigma weight residual 1.514 1.543 -0.029 5.50e-03 3.31e+04 2.72e+01 bond pdb=" CG1 ILE 2 170 " pdb=" CD1 ILE 2 170 " ideal model delta sigma weight residual 1.513 1.322 0.191 3.90e-02 6.57e+02 2.39e+01 bond pdb=" CG1 ILE A2051 " pdb=" CD1 ILE A2051 " ideal model delta sigma weight residual 1.513 1.335 0.178 3.90e-02 6.57e+02 2.08e+01 bond pdb=" CB ARG 6 66 " pdb=" CG ARG 6 66 " ideal model delta sigma weight residual 1.520 1.393 0.127 3.00e-02 1.11e+03 1.80e+01 bond pdb=" CG1 ILE A1367 " pdb=" CD1 ILE A1367 " ideal model delta sigma weight residual 1.513 1.357 0.156 3.90e-02 6.57e+02 1.61e+01 ... (remaining 131561 not shown) Histogram of bond angle deviations from ideal: 94.33 - 102.50: 1237 102.50 - 110.67: 43313 110.67 - 118.83: 64811 118.83 - 127.00: 68435 127.00 - 135.17: 2541 Bond angle restraints: 180337 Sorted by residual: angle pdb=" N PRO L 417 " pdb=" CA PRO L 417 " pdb=" CB PRO L 417 " ideal model delta sigma weight residual 103.08 111.40 -8.32 9.70e-01 1.06e+00 7.35e+01 angle pdb=" N ASN 3 435 " pdb=" CA ASN 3 435 " pdb=" C ASN 3 435 " ideal model delta sigma weight residual 110.24 120.43 -10.19 1.30e+00 5.92e-01 6.15e+01 angle pdb=" O3' G B 27 " pdb=" C3' G B 27 " pdb=" C2' G B 27 " ideal model delta sigma weight residual 109.50 121.21 -11.71 1.50e+00 4.44e-01 6.09e+01 angle pdb=" N PRO I 773 " pdb=" CA PRO I 773 " pdb=" CB PRO I 773 " ideal model delta sigma weight residual 103.08 110.60 -7.52 9.70e-01 1.06e+00 6.01e+01 angle pdb=" N PRO L 432 " pdb=" CA PRO L 432 " pdb=" CB PRO L 432 " ideal model delta sigma weight residual 103.20 110.55 -7.35 9.50e-01 1.11e+00 5.99e+01 ... (remaining 180332 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 35.85: 77764 35.85 - 71.70: 1896 71.70 - 107.55: 178 107.55 - 143.41: 23 143.41 - 179.26: 17 Dihedral angle restraints: 79878 sinusoidal: 36095 harmonic: 43783 Sorted by residual: dihedral pdb=" O4' U B 60 " pdb=" C1' U B 60 " pdb=" N1 U B 60 " pdb=" C2 U B 60 " ideal model delta sinusoidal sigma weight residual 200.00 43.76 156.24 1 1.50e+01 4.44e-03 8.17e+01 dihedral pdb=" O4' U H 47 " pdb=" C1' U H 47 " pdb=" N1 U H 47 " pdb=" C2 U H 47 " ideal model delta sinusoidal sigma weight residual 200.00 49.22 150.78 1 1.50e+01 4.44e-03 7.99e+01 dihedral pdb=" O4' C B 79 " pdb=" C1' C B 79 " pdb=" N1 C B 79 " pdb=" C2 C B 79 " ideal model delta sinusoidal sigma weight residual 200.00 66.70 133.30 1 1.50e+01 4.44e-03 7.19e+01 ... (remaining 79875 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.996: 20704 0.996 - 1.991: 0 1.991 - 2.987: 0 2.987 - 3.983: 0 3.983 - 4.979: 2 Chirality restraints: 20706 Sorted by residual: chirality pdb=" C2 IHP A3000 " pdb=" C1 IHP A3000 " pdb=" C3 IHP A3000 " pdb=" O12 IHP A3000 " both_signs ideal model delta sigma weight residual False -2.52 2.46 -4.98 2.00e-01 2.50e+01 6.20e+02 chirality pdb=" C3 IHP A3000 " pdb=" C2 IHP A3000 " pdb=" C4 IHP A3000 " pdb=" O13 IHP A3000 " both_signs ideal model delta sigma weight residual False -2.34 2.50 -4.84 2.00e-01 2.50e+01 5.86e+02 chirality pdb=" CG LEU 3 65 " pdb=" CB LEU 3 65 " pdb=" CD1 LEU 3 65 " pdb=" CD2 LEU 3 65 " both_signs ideal model delta sigma weight residual False -2.59 -2.00 -0.58 2.00e-01 2.50e+01 8.55e+00 ... (remaining 20703 not shown) Planarity restraints: 21213 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" CA LYS A1093 " 0.027 2.00e-02 2.50e+03 5.34e-02 2.85e+01 pdb=" C LYS A1093 " -0.092 2.00e-02 2.50e+03 pdb=" O LYS A1093 " 0.034 2.00e-02 2.50e+03 pdb=" N ASP A1094 " 0.032 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" CB TYR A 689 " 0.029 2.00e-02 2.50e+03 3.56e-02 2.53e+01 pdb=" CG TYR A 689 " -0.082 2.00e-02 2.50e+03 pdb=" CD1 TYR A 689 " 0.037 2.00e-02 2.50e+03 pdb=" CD2 TYR A 689 " -0.001 2.00e-02 2.50e+03 pdb=" CE1 TYR A 689 " -0.004 2.00e-02 2.50e+03 pdb=" CE2 TYR A 689 " 0.033 2.00e-02 2.50e+03 pdb=" CZ TYR A 689 " -0.004 2.00e-02 2.50e+03 pdb=" OH TYR A 689 " -0.008 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" CB PHE A1343 " 0.028 2.00e-02 2.50e+03 3.63e-02 2.30e+01 pdb=" CG PHE A1343 " -0.083 2.00e-02 2.50e+03 pdb=" CD1 PHE A1343 " 0.031 2.00e-02 2.50e+03 pdb=" CD2 PHE A1343 " 0.023 2.00e-02 2.50e+03 pdb=" CE1 PHE A1343 " -0.004 2.00e-02 2.50e+03 pdb=" CE2 PHE A1343 " 0.002 2.00e-02 2.50e+03 pdb=" CZ PHE A1343 " 0.003 2.00e-02 2.50e+03 ... (remaining 21210 not shown) Histogram of nonbonded interaction distances: 2.08 - 2.64: 2313 2.64 - 3.21: 109372 3.21 - 3.77: 202092 3.77 - 4.34: 287202 4.34 - 4.90: 441146 Nonbonded interactions: 1042125 Sorted by model distance: nonbonded pdb="MG MG F 202 " pdb=" O HOH F 381 " model vdw 2.079 2.170 nonbonded pdb=" OP1 G F 77 " pdb="MG MG F 204 " model vdw 2.083 2.170 nonbonded pdb="MG MG F 201 " pdb=" O HOH F 358 " model vdw 2.087 2.170 nonbonded pdb=" O2B GTP C1101 " pdb="MG MG C1102 " model vdw 2.088 2.170 nonbonded pdb="MG MG F 204 " pdb=" O HOH F 378 " model vdw 2.089 2.170 ... (remaining 1042120 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model Found NCS groups: ncs_group { reference = (chain 'a' and resid 8 through 102) selection = (chain 'h' and ((resid 8 through 53 and (name N or name CA or name C or name O ) \ ) or (resid 77 through 102 and (name N or name CA or name C or name O )))) } ncs_group { reference = (chain 'b' and (resid 1 through 47 or resid 75 through 76 or resid 78 through 79 \ or resid 90 through 109)) selection = (chain 'm' and ((resid 1 through 47 and (name N or name CA or name C or name O ) \ ) or (resid 80 through 81 and (name N or name CA or name C or name O )) or (resi \ d 86 through 87 and (name N or name CA or name C or name O )) or (resid 90 throu \ gh 109 and (name N or name CA or name C or name O )))) } ncs_group { reference = chain 'd' selection = (chain 'l' and (resid 5 through 83 and (name N or name CA or name C or name O )) \ ) } ncs_group { reference = (chain 'e' and (resid 10 through 68 or resid 79 through 92)) selection = (chain 'i' and ((resid 10 through 60 and (name N or name CA or name C or name O \ )) or (resid 73 and (name N or name CA or name C or name O )) or (resid 79 throu \ gh 92 and (name N or name CA or name C or name O )))) } ncs_group { reference = (chain 'f' and resid 12 through 83) selection = (chain 'j' and ((resid 12 through 32 and (name N or name CA or name C or name O \ )) or (resid 36 through 83 and (name N or name CA or name C or name O )))) } ncs_group { reference = (chain 'g' and (resid 2 through 47 or resid 54 through 76)) selection = (chain 'k' and ((resid 2 through 58 and (name N or name CA or name C or name O ) \ ) or (resid 61 through 76 and (name N or name CA or name C or name O )))) } ncs_group { reference = (chain 'q' and (resid 1 through 51 or (resid 76 and (name N or name CA or name C \ or name O or name CB )) or resid 77 through 139)) selection = (chain 'r' and (resid 1 through 51 or resid 65 through 139)) selection = (chain 's' and (resid 1 through 51 or resid 65 through 139)) selection = (chain 't' and (resid 1 through 51 or resid 65 through 139)) } Set up NCS constraints No NCS constraints will be used in refinement. Set refine NCS operators Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=0.30 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as individual isotropic Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 2.800 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.000 Assert all atoms have isotropic ADPs: 0.000 Construct map_model_manager: 0.130 Extract box with map and model: 18.030 Check model and map are aligned: 1.370 Set scattering table: 0.870 Process input model: 394.210 Find NCS groups from input model: 3.530 Set up NCS constraints: 0.480 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.000 Extract rigid body selections: 0.000 Check and reset occupancies: 0.020 Load rotamer database and sin/cos tables:12.540 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 433.980 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.6318 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.010 0.191 131566 Z= 0.644 Angle : 1.106 12.173 180337 Z= 0.621 Chirality : 0.084 4.979 20706 Planarity : 0.008 0.088 21213 Dihedral : 15.023 179.258 51712 Min Nonbonded Distance : 2.079 Molprobity Statistics. All-atom Clashscore : 5.90 Ramachandran Plot: Outliers : 0.48 % Allowed : 4.40 % Favored : 95.12 % Rotamer: Outliers : 1.87 % Allowed : 3.27 % Favored : 94.86 % Cbeta Deviations : 0.06 % Peptide Plane: Cis-proline : 1.75 % Cis-general : 0.00 % Twisted Proline : 0.00 % Twisted General : 0.00 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -3.91 (0.05), residues: 14992 helix: -3.65 (0.04), residues: 6245 sheet: -1.19 (0.11), residues: 2087 loop : -1.79 (0.07), residues: 6660 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.042 0.005 TRP z 60 HIS 0.030 0.004 HIS V 170 PHE 0.083 0.005 PHE A1343 TYR 0.082 0.005 TYR A 689 ARG 0.043 0.002 ARG 31302 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 29984 Ramachandran restraints generated. 14992 Oldfield, 0 Emsley, 14992 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 29984 Ramachandran restraints generated. 14992 Oldfield, 0 Emsley, 14992 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 2588 residues out of total 13855 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 244 poor density : 2344 time to evaluate : 10.066 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash Traceback (most recent call last): File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/build/../modules/phenix/phenix/command_line/real_space_refine.py", line 8, in run_program(real_space_refine.Program) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/iotbx/cli_parser.py", line 944, in run_program task.run() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/programs/real_space_refine.py", line 189, in run log = self.logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/rsr/wrappers.py", line 58, in __init__ log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 303, in __init__ self.caller(self.optimize_sidechains) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 321, in caller func() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 609, in optimize_sidechains log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 83, in __init__ rotatable_hd = self.rotatable_hd) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 189, in run_one pdb_hierarchy = self.run_one_one(args=args) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 133, in run_one_one log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 108, in __init__ self.loop(function = self.one_residue_iteration) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 284, in loop function(residue = residue) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 271, in one_residue_iteration log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 172, in __init__ self.fit_proline() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 217, in fit_proline for rotamer, sites_cart in rotamer_iterator: TypeError: 'NoneType' object is not iterable