phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7dcq_30639/11_2022/7dcq_30639.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7dcq_30639/11_2022/7dcq_30639.map refinement.macro_cycles=10 scattering_table=electron resolution=2.9 write_initial_geo_file=False >& 7dcq.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7dcq_30639/11_2022/7dcq_30639.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7dcq_30639/11_2022/7dcq_30639.map 2.9
Refinement ran but no refined model file.