INPUT
  
    Reading model from /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7eda_31062/12_2022/7eda_31062.pdb
    Reading option "hydrogens=False" from command line
    Writing effective parameters to 7eda_31062.eff

    Ligand restraint generation using eLBOW, phenix.elbow
    
Traceback (most recent call last):
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/build/../modules/elbow/elbow/command_line/ready_set.py", line 1108, in <module>
    run(args)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/build/../modules/elbow/elbow/command_line/ready_set.py", line 882, in run
    random_seed=working_params.ready_set.run_options.random_seed,
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/build/../modules/elbow/elbow/command_line/ready_set.py", line 266, in run_though_all_the_options
    None),
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/elbow/elbow/scripts/elbow_on_pdb_file.py", line 2487, in run
    hydrogens=hydrogens,
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/elbow/elbow/scripts/elbow_on_pdb_file.py", line 506, in elbow_on_pdb_file
    verbose=verbose,
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/elbow/elbow/command_line/check_residues_against_chemical_components.py", line 51, in run
    names = is_residue_specified(residue, alternate=alternate)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/cctbx_project/mmtbx/chemical_components/__init__.py", line 85, in is_residue_specified
    return get_atom_names(code, alternate=alternate)
  File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-4807/modules/cctbx_project/mmtbx/chemical_components/__init__.py", line 193, in get_atom_names
    for item in cif["_chem_comp_atom"]:
KeyError: '_chem_comp_atom'