phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7efd_31084/04_2022/7efd_31084_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7efd_31084/04_2022/7efd_31084.map refinement.macro_cycles=10 scattering_table=electron resolution=1.77 write_initial_geo_file=False >& 7efd.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7efd_31084/04_2022/7efd_31084.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7efd_31084/04_2022/7efd_31084.map 1.77
Refinement ran but no refined model file.