phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7jm6_22386/05_2023/7jm6_22386_trim_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7jm6_22386/05_2023/7jm6_22386.map refinement.macro_cycles=10 scattering_table=electron resolution=2.92 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7jm6_22386/05_2023/7jm6_22386_trim_ligands.cif >& 7jm6.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7jm6_22386/05_2023/7jm6_22386.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7jm6_22386/05_2023/7jm6_22386.map 2.92
Refinement ran but no refined model file.