phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7l6o_23124/05_2023/7l6o_23124_trim.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7l6o_23124/05_2023/7l6o_23124.map refinement.macro_cycles=10 scattering_table=electron resolution=3.9 write_initial_geo_file=False >& 7l6o.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7l6o_23124/05_2023/7l6o_23124.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7l6o_23124/05_2023/7l6o_23124.map 3.9
Refinement ran but no refined model file.