phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7lpb_23475/03_2023/7lpb_23475_neut_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7lpb_23475/03_2023/7lpb_23475.map refinement.macro_cycles=10 scattering_table=electron resolution=3.54 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7lpb_23475/03_2023/7lpb_23475_neut_ligands.cif >& 7lpb.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7lpb_23475/03_2023/7lpb_23475.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7lpb_23475/03_2023/7lpb_23475.map 3.54
Refinement ran but no refined model file.