phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7m5o_23678/02_2023/7m5o_23678.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7m5o_23678/02_2023/7m5o_23678.map refinement.macro_cycles=10 scattering_table=electron resolution=3.54 write_initial_geo_file=False >& 7m5o.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7m5o_23678/02_2023/7m5o_23678.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/7m5o_23678/02_2023/7m5o_23678.map 3.54
Refinement ran but no refined model file.